Pregenerated sensors for TBPL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071359Ensembl transcript IDs: ENSMUST00000095794.4, ENSMUST00000127698.8
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAACCAGGCGACGCAACACCCACTCACTCCTTCCCAGCATTTTTGTaGGGACTGCCCAGGAAGCTGCCAGACAGTGGCCTCACAGGTGAC | + |
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Preference number: 1 (lower is better) Translates to: KPGDATPTHSFPAFL*GLPRKLPDSGLTGD Trigger: GTCACCTGTGAGGCCACTGTCTGGCAGCTTCCTGGGCAGTCCCCACAAAAATGCTGGGAAGGAGTGAGTGGGTGTTGCGTCGCCTGGTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR TCA 90 bp | TTACCCAGAGCTCCAGCTCTGCCTGGCTTTCAGGTCACTGAACACTaGACATGTTACAGCGAATGGATCTGCACCTTCCCTACCCAAGTT | + |
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Preference number: 1 (lower is better) Translates to: LPRAPALPGFQVTEH*TCYSEWICTFPTQV Trigger: AACTTGGGTAGGGAAGGTGCAGATCCATTCGCTGTAACATGTTCAGTGTTCAGTGACCTGAAAGCCAGGCAGAGCTGGAGCTCTGGGTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR CCA 90 bp | ACTACTCAGACACGGCGAGGACAGAGACCAGCTTGCCAGAGGCTTTaGGTCAAGTCGAGCCACTTCTTGTTAAAACACAATGTCAGTCAA | + |
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Preference number: 1 (lower is better) Translates to: TTQTRRGQRPACQRL*VKSSHFLLKHNVSQ Trigger: TTGACTGACATTGTGTTTTAACAAGAAGTGGCTCGACTTGACCCAAAGCCTCTGGCAAGCTGGTCTCTGTCCTCGCCGTGTCTGAGTAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR GCA 90 bp | AACATGTTACAGCGAATGGATCTGCACCTTCCCTACCCAAGTTTCTaGCTCACATACATGTTTCTGAACACTGCAAACCAGGAGTTCACT | + |
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Preference number: 1 (lower is better) Translates to: NMLQRMDLHLPYPSF*LTYMFLNTANQEFT Trigger: AGTGAACTCCTGGTTTGCAGTGTTCAGAAACATGTATGTGAGGCAGAAACTTGGGTAGGGAAGGTGCAGATCCATTCGCTGTAACATGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR TCA 90 bp | ATCTGCACCTTCCCTACCCAAGTTTCTGCCTCACATACATGTTTCTaGACACTGCAAACCAGGAGTTCACTGTTAAAACAAGTGGTAAAT | + |
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Preference number: 1 (lower is better) Translates to: ICTFPTQVSASHTCF*TLQTRSSLLKQVVN Trigger: ATTTACCACTTGTTTTAACAGTGAACTCCTGGTTTGCAGTGTTCAGAAACATGTATGTGAGGCAGAAACTTGGGTAGGGAAGGTGCAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR-3UTR CCA 90 bp | AAGCACCTGTCCGACCATGCCTTTCCACCCAGAGCCCATGCACGGCTGAGGCCCCGACAGCTCTGCCTGTaGGACATGGAGATTACTGCG | + |
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Preference number: 2 (lower is better) Translates to: KHLSDHAFPPRAHARLRPRQLCL*DMEITA Trigger: CGCAGTAATCTCCATGTCCCACAGGCAGAGCTGTCG...GGGCCTCAGCCGTGCATGGGCTCTGGGTGGAAAGGCATGGTCGGACAGGTGCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR-3UTR GCA 90 bp | CTCACTCCTTCCCAGCATTTTTGTGGGGACTGCCCAGGAAGCTGCCAGACAGTGGCACCTGTCCGACCATaGCTTTCCACCCAGAGCCCA | + |
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Preference number: 2 (lower is better) Translates to: LTPSQHFCGDCPGSCQTVAPVRP*LSTQSP Trigger: TGGGCTCTGGGTGGAAAGGCATGGTCGGACAGGTGC...CACTGTCTGGCAGCTTCCTGGGCAGTCCCCACAAAAATGCTGGGAAGGAGTGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR-3UTR GCA 90 bp | CTCACTCCTTCCCAGCATTTTTGTGGGGACTGCCCAGGAAGCTGCCAGACAGTGCCCTACCCAAGTTTCTaGCTCACATACATGTTTCTG | + |
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Preference number: 2 (lower is better) Translates to: LTPSQHFCGDCPGSCQTVPYPSF*LTYMFL Trigger: CAGAAACATGTATGTGAGGCAGAAACTTGGGTAGGG...CACTGTCTGGCAGCTTCCTGGGCAGTCCCCACAAAAATGCTGGGAAGGAGTGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR-3UTR GCA 90 bp | CTCACTCCTTCCCAGCATTTTTGTGGGGACTGCCCAGGAAGCTGCCAGACAGTGCATGTTTCTGAACACTaGAAACCAGGAGTTCACTGT | + |
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Preference number: 2 (lower is better) Translates to: LTPSQHFCGDCPGSCQTVHVSEH*KPGVHC Trigger: ACAGTGAACTCCTGGTTTGCAGTGTTCAGAAACATG...CACTGTCTGGCAGCTTCCTGGGCAGTCCCCACAAAAATGCTGGGAAGGAGTGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR-3UTR CCA 90 bp | TTATGGGAAAAGCAAGTGCAAAGCTCACCTTTGCTCCCACGTTCTGAAGGAGCTGCTTGCCAGAGGCTTTaGGTCAAGTCGAGCCACTTC | + |
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Preference number: 2 (lower is better) Translates to: LWEKQVQSSPLLPRSEGAACQRL*VKSSHF Trigger: GAAGTGGCTCGACTTGACCCAAAGCCTCTGGCAAGC...AGCTCCTTCAGAACGTGGGAGCAAAGGTGAGCTTTGCACTTGCTTTTCCCATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR-3UTR TCA 90 bp | CTCACTCCTTCCCAGCATTTTTGTGGGGACTGCCCAGGAAGCTGCCAGACAGTGTTAAGAAAACAGAACTaGACACAGACTCCTATGCAC | + |
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Preference number: 2 (lower is better) Translates to: LTPSQHFCGDCPGSCQTVLRKQN*TQTPMH Trigger: GTGCATAGGAGTCTGTGTTCAGTTCTGTTTTCTTAA...CACTGTCTGGCAGCTTCCTGGGCAGTCCCCACAAAAATGCTGGGAAGGAGTGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR-3UTR CCA 90 bp | CCAGCATTTTTGTGGGGACTGCCCAGGAAGCTGCCAGACAGTGGCCTCACAGGTAGTCACAATGAATTATaGGAAAAGCAAGTGCAAAGC | + |
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Preference number: 2 (lower is better) Translates to: PAFLWGLPRKLPDSGLTGSHNEL*EKQVQS Trigger: GCTTTGCACTTGCTTTTCCCATAATTCATTGTGACT...ACCTGTGAGGCCACTGTCTGGCAGCTTCCTGGGCAGTCCCCACAAAAATGCTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR-3UTR TCA 90 bp | TTATGGGAAAAGCAAGTGCAAAGCTCACCTTTGCTCCCACGTTCTGAAGGAGCTGTTTTCCTTGTGTTTTaGGTCCAATGTGCAGCAGGT | + |
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Preference number: 2 (lower is better) Translates to: LWEKQVQSSPLLPRSEGAVFLVF*VQCAAG Trigger: ACCTGCTGCACATTGGACTCAAAACACAAGGAAAAC...AGCTCCTTCAGAACGTGGGAGCAAAGGTGAGCTTTGCACTTGCTTTTCCCATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR-3UTR TCA 90 bp | CTCCAGCTCTGCCTGGCTTTCAGGTCACTGAACACTGAACATGTTACAGCGAATTCACATACATGTTTCTaGACACTGCAAACCAGGAGT | + |
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Preference number: 2 (lower is better) Translates to: LQLCLAFRSLNTEHVTANSHTCF*TLQTRS Trigger: ACTCCTGGTTTGCAGTGTTCAGAAACATGTATGTGA...ATTCGCTGTAACATGTTCAGTGTTCAGTGACCTGAAAGCCAGGCAGAGCTGGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR CAA 90 bp | GTTAAAACACAATGTCAGTCAATTTCTGACAAGACCAGCATAGCCTaGAGCACCGACCTAAGGGTAGTTAAGAACCTCTGCTGGCTCGTT | + |
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Preference number: 2 (lower is better) Translates to: VKTQCQSISDKTSIA*STDLRVVKNLCWLV Trigger: AACGAGCCAGCAGAGGTTCTTAACTACCCTTAGGTCGGTGCTCAAGGCTATGCTGGTCTTGTCAGAAATTGACTGACATTGTGTTTTAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR-3UTR CCA 90 bp | ACAGTACTTGTAGAAAACCAGGCGACGCAACACCCACTCACTCCTTCCCAGCATATTATCATTTACCTGTaGAGTTCTACCCTAGTTACC | + |
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Preference number: 2 (lower is better) Translates to: TVLVENQATQHPLTPSQHIIIYL*SSTLVT Trigger: GGTAACTAGGGTAGAACTCCACAGGTAAATGATAAT...ATGCTGGGAAGGAGTGAGTGGGTGTTGCGTCGCCTGGTTTTCTACAAGTACTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR CAA 90 bp | GTTAGCCTTGGAAGGTCTGTAATATGGTGCACATGTCACAAGCCTTaGCAAACATTTCAAAAATACAACAGTAAGTCAGAGCTTGGTGGG | + |
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Preference number: 2 (lower is better) Translates to: VSLGRSVIWCTCHKP*QTFQKYNSKSELGG Trigger: CCCACCAAGCTCTGACTTACTGTTGTATTTTTGAAATGTTTGCAAAGGCTTGTGACATGTGCACCATATTACAGACCTTCCAAGGCTAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR CAA 90 bp | ACAAGCCTTTGCAAACATTTCAAAAATACAACAGTAAGTCAGAGCTaGGTGGGAAATAGTTTCGTCTGTACAGAGAATCTAAGTTTTGAC | + |
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Preference number: 2 (lower is better) Translates to: TSLCKHFKNTTVSQS*VGNSFVCTENLSFD Trigger: GTCAAAACTTAGATTCTCTGTACAGACGAAACTATTTCCCACCAAGCTCTGACTTACTGTTGTATTTTTGAAATGTTTGCAAAGGCTTGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR TCA 72 bp | ACTGCCCAGGAAGCTGCCAGACAGTGGCCTCACAGGTaGCCCCAGACTCGGCCATGCTCACTCTTCCCTCCT | + |
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Preference number: 3 (lower is better) Translates to: TAQEAARQWPHR*PQTRPCSLFPP Trigger: AGGAGGGAAGAGTGAGCATGGCCGAGTCTGGGGTCACCTGTGAGGCCACTGTCTGGCAGCTTCCTGGGCAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR GCA 72 bp | GCACCTGTCCGACCATGCCTTTCCACCCAGAGCCCATaGACGGCTGAGGCCCTGTCTCATGGAACTGAAGTT | + |
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Preference number: 3 (lower is better) Translates to: APVRPCLSTQSP*TAEALSHGTEV Trigger: AACTTCAGTTCCATGAGACAGGGCCTCAGCCGTGCATGGGCTCTGGGTGGAAAGGCATGGTCGGACAGGTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR GCA 72 bp | CACCCACTCACTCCTTCCCAGCATTTTTGTGGGGACTaGCCAGGAAGCTGCCAGACAGTGGCCTCACAGGTG | + |
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Preference number: 3 (lower is better) Translates to: HPLTPSQHFCGD*PGSCQTVASQV Trigger: CACCTGTGAGGCCACTGTCTGGCAGCTTCCTGGGCAGTCCCCACAAAAATGCTGGGAAGGAGTGAGTGGGTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR CCA 72 bp | GACGCAACACCCACTCACTCCTTCCCAGCATTTTTGTaGGGACTGCCCAGGAAGCTGCCAGACAGTGGCCTC | + |
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Preference number: 3 (lower is better) Translates to: DATPTHSFPAFL*GLPRKLPDSGL Trigger: GAGGCCACTGTCTGGCAGCTTCCTGGGCAGTCCCCACAAAAATGCTGGGAAGGAGTGAGTGGGTGTTGCGTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR GCA 72 bp | GAGTGGCCTCTCTTAATCCTCCAGTCACCCTTCACATaGACTACTCAGACACGGCGAGGACAGAGACCAGCT | + |
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Preference number: 3 (lower is better) Translates to: EWPLLILQSPFT*TTQTRRGQRPA Trigger: AGCTGGTCTCTGTCCTCGCCGTGTCTGAGTAGTGCATGTGAAGGGTGACTGGAGGATTAAGAGAGGCCACTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR TCA 72 bp | GCTCCAGCTCTGCCTGGCTTTCAGGTCACTGAACACTaGACATGTTACAGCGAATGGATCTGCACCTTCCCT | + |
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Preference number: 3 (lower is better) Translates to: APALPGFQVTEH*TCYSEWICTFP Trigger: AGGGAAGGTGCAGATCCATTCGCTGTAACATGTTCAGTGTTCAGTGACCTGAAAGCCAGGCAGAGCTGGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR TCA 72 bp | ACCCAGAGCTCCAGCTCTGCCTGGCTTTCAGGTCACTaGACACTGAACATGTTACAGCGAATGGATCTGCAC | + |
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Preference number: 3 (lower is better) Translates to: TQSSSSAWLSGH*TLNMLQRMDLH Trigger: GTGCAGATCCATTCGCTGTAACATGTTCAGTGTTCAGTGACCTGAAAGCCAGGCAGAGCTGGAGCTCTGGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR CCA 72 bp | ACACGGCGAGGACAGAGACCAGCTTGCCAGAGGCTTTaGGTCAAGTCGAGCCACTTCTTGTTAAAACACAAT | + |
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Preference number: 3 (lower is better) Translates to: TRRGQRPACQRL*VKSSHFLLKHN Trigger: ATTGTGTTTTAACAAGAAGTGGCTCGACTTGACCCAAAGCCTCTGGCAAGCTGGTCTCTGTCCTCGCCGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR-3UTR CAA 90 bp | TTTACAGTACTTGTAGAAAACCAGGCGACGCAACACCCACTCACTCCTTCCCAGTGTCCTCGGTCACTGTaGGTCCAGTTTTCCTTGTGT | + |
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Preference number: 3 (lower is better) Translates to: FTVLVENQATQHPLTPSQCPRSL*VQFSLC Trigger: ACACAAGGAAAACTGGACCAACAGTGACCGAGGACA...CTGGGAAGGAGTGAGTGGGTGTTGCGTCGCCTGGTTTTCTACAAGTACTGTAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR GCA 72 bp | CAGCGAATGGATCTGCACCTTCCCTACCCAAGTTTCTaGCTCACATACATGTTTCTGAACACTGCAAACCAG | + |
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Preference number: 3 (lower is better) Translates to: QRMDLHLPYPSF*LTYMFLNTANQ Trigger: CTGGTTTGCAGTGTTCAGAAACATGTATGTGAGGCAGAAACTTGGGTAGGGAAGGTGCAGATCCATTCGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR-3UTR CAA 90 bp | AAAAGTCACAATGAATTATGGGAAAAGCAAGTGCAAAGCTCACCTTTGCTCCCAAGGACAGAGACCAGCTaGCCAGAGGCTTTGGGTCAA | + |
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Preference number: 3 (lower is better) Translates to: KSHNELWEKQVQSSPLLPRTETS*PEALGQ Trigger: TTGACCCAAAGCCTCTGGCAAGCTGGTCTCTGTCCT...TGGGAGCAAAGGTGAGCTTTGCACTTGCTTTTCCCATAATTCATTGTGACTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR TCA 72 bp | TTCCCTACCCAAGTTTCTGCCTCACATACATGTTTCTaGACACTGCAAACCAGGAGTTCACTGTTAAAACAA | + |
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Preference number: 3 (lower is better) Translates to: FPTQVSASHTCF*TLQTRSSLLKQ Trigger: TTGTTTTAACAGTGAACTCCTGGTTTGCAGTGTTCAGAAACATGTATGTGAGGCAGAAACTTGGGTAGGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR CAA 72 bp | GGCGACGCAACACCCACTCACTCCTTCCCAGCATTTTaGTGGGGACTGCCCAGGAAGCTGCCAGACAGTGGC | + |
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Preference number: 4 (lower is better) Translates to: GDATPTHSFPAF*WGLPRKLPDSG Trigger: GCCACTGTCTGGCAGCTTCCTGGGCAGTCCCCACAAAAATGCTGGGAAGGAGTGAGTGGGTGTTGCGTCGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| CDS-3UTR TCA 90 bp | CCAGCATTTTTGTGGGGACTGCCCAGGAAGCTGCCAGACAGTGGCCTCACAGGTTGGGCCCTGTCACTGTaGTGCTTCCTGTTGAAAATA | + |
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Preference number: 4 (lower is better) Translates to: PAFLWGLPRKLPDSGLTGWALSL*CFLLKI Trigger: TATTTTCAACAGGAAGCATCACAGTGACAGGGCCCA...ACCTGTGAGGCCACTGTCTGGCAGCTTCCTGGGCAGTCCCCACAAAAATGCTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| CDS-3UTR GCA 90 bp | AAGCACCTGTCCGACCATGCCTTTCCACCCAGAGCCCATGCACGGCTGAGGCCCATAAAATCTCCTTCCTaGTTTCAAACACGAACGGGT | + |
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Preference number: 4 (lower is better) Translates to: KHLSDHAFPPRAHARLRPIKSPS*FQTRTG Trigger: ACCCGTTCGTGTTTGAAAGCAGGAAGGAGATTTTAT...GGGCCTCAGCCGTGCATGGGCTCTGGGTGGAAAGGCATGGTCGGACAGGTGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| CDS-3UTR TCA 90 bp | CCAGCATTTTTGTGGGGACTGCCCAGGAAGCTGCCAGACAGTGGCCTCACAGGTTCTGTGAAGATGACCTaGAAACCTAGTTTCTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: PAFLWGLPRKLPDSGLTGSVKMT*KPSFCR Trigger: TCTGCAGAAACTAGGTTTTCAGGTCATCTTCACAGA...ACCTGTGAGGCCACTGTCTGGCAGCTTCCTGGGCAGTCCCCACAAAAATGCTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR CAA 72 bp | AATGAATTATGGGAAAAGCAAGTGCAAAGCTCACCTTaGCTCCCACGTTCTGAAGGAGCTGAGGGGCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: NELWEKQVQSSP*LPRSEGAEGQG Trigger: CCCCTGCCCCTCAGCTCCTTCAGAACGTGGGAGCAAAGGTGAGCTTTGCACTTGCTTTTCCCATAATTCATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| CDS-3UTR CCA 90 bp | CTCCAGCTCTGCCTGGCTTTCAGGTCACTGAACACTGAACATGTTACAGCGAATGTTCAGGTTCATAGCTaGCATGAGGTCTATTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: LQLCLAFRSLNTEHVTANVQVHS*HEVYCS Trigger: AGAACAATAGACCTCATGCCAGCTATGAACCTGAAC...ATTCGCTGTAACATGTTCAGTGTTCAGTGACCTGAAAGCCAGGCAGAGCTGGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR CAA 72 bp | CAATGTCAGTCAATTTCTGACAAGACCAGCATAGCCTaGAGCACCGACCTAAGGGTAGTTAAGAACCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: QCQSISDKTSIA*STDLRVVKNLC Trigger: GCAGAGGTTCTTAACTACCCTTAGGTCGGTGCTCAAGGCTATGCTGGTCTTGTCAGAAATTGACTGACATTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| CDS-3UTR GCA 90 bp | AGTTTAAGAGTGGCCTCTCTTAATCCTCCAGTCACCCTTCACATGCACTACTCAGGGCATGTTACACACTaGCAAAACATTCACCACCTT | + |
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Preference number: 4 (lower is better) Translates to: SLRVASLNPPVTLHMHYSGHVTH*QNIHHL Trigger: AAGGTGGTGAATGTTTTGGCAGTGTGTAACATGCCC...TGAGTAGTGCATGTGAAGGGTGACTGGAGGATTAAGAGAGGCCACTCTTAAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| 3UTR CAA 72 bp | TGCAAACATTTCAAAAATACAACAGTAAGTCAGAGCTaGGTGGGAAATAGTTTCGTCTGTACAGAGAATCTA | + |
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Preference number: 4 (lower is better) Translates to: CKHFKNTTVSQS*VGNSFVCTENL Trigger: TAGATTCTCTGTACAGACGAAACTATTTCCCACCAAGCTCTGACTTACTGTTGTATTTTTGAAATGTTTGCA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| CDS-3UTR CAA 90 bp | TTTACAGTACTTGTAGAAAACCAGGCGACGCAACACCCACTCACTCCTTCCCAGGCCACAGCCTTTACATaGGGCCCTGTCACTGTGATG | + |
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Preference number: 5 (lower is better) Translates to: FTVLVENQATQHPLTPSQATAFT*GPVTVM Trigger: CATCACAGTGACAGGGCCCAATGTAAAGGCTGTGGC...CTGGGAAGGAGTGAGTGGGTGTTGCGTCGCCTGGTTTTCTACAAGTACTGTAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| CDS-3UTR CAA 90 bp | CTCACTCCTTCCCAGCATTTTTGTGGGGACTGCCCAGGAAGCTGCCAGACAGTGGCTTATAAATTACATTaGCTCCCTCCAAAGCAATCT | + |
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Preference number: 5 (lower is better) Translates to: LTPSQHFCGDCPGSCQTVAYKLH*LPPKQS Trigger: AGATTGCTTTGGAGGGAGCAAATGTAATTTATAAGC...CACTGTCTGGCAGCTTCCTGGGCAGTCCCCACAAAAATGCTGGGAAGGAGTGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000127698.8 |
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| CDS GCA 90 bp | CTTTGTAAATTCTGGCAAACGGATCTCAAAGGGCATGTTACACACTaGCAAAACATTCACCACCTTAAAATCTGTGAAGATGACCTGAAA | + |
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Preference number: 5 (lower is better) Translates to: LCKFWQTDLKGHVTH*QNIHHLKICEDDLK Trigger: TTTCAGGTCATCTTCACAGATTTTAAGGTGGTGAATGTTTTGGCAGTGTGTAACATGCCCTTTGAGATCCGTTTGCCAGAATTTACAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000095794.4 ENSMUST00000127698.8 |
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| CDS TCA 90 bp | TTTAGCTTCTTCTTCACTTGTTGCTCCAGTGCAAATAATTTTTCCTaGGGACCAAATTGTAGCTGTAATTCTAGGTTTTCTAAGCTTCAT | + |
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Preference number: 5 (lower is better) Translates to: FSFFFTCCSSANNFS*GPNCSCNSRFSKLH Trigger: ATGAAGCTTAGAAAACCTAGAATTACAGCTACAATTTGGTCCTCAGGAAAAATTATTTGCACTGGAGCAACAAGTGAAGAAGAAGCTAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000095794.4 ENSMUST00000127698.8 |
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| CDS GCA 72 bp | TTCTGGCAAACGGATCTCAAAGGGCATGTTACACACTaGCAAAACATTCACCACCTTAAAATCTGTGAAGAT | + |
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Preference number: 6 (lower is better) Translates to: FWQTDLKGHVTH*QNIHHLKICED Trigger: ATCTTCACAGATTTTAAGGTGGTGAATGTTTTGGCAGTGTGTAACATGCCCTTTGAGATCCGTTTGCCAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000095794.4 ENSMUST00000127698.8 |
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