RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TBL1XR1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027630

Ensembl transcript IDs: ENSMUST00000063988.14, ENSMUST00000192328.5, ENSMUST00000193734.6, ENSMUST00000200793.4, ENSMUST00000201509.2, ENSMUST00000202747.4

Found 306 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTCTGTGGAGCAGCATCATGGCACGTCAGCAGGCTACAGGGACAGTaGGAGCAGCAGCAAAGCACACAGTCCTACGCTCACAGAGAACCA +
Preference number: 1 (lower is better)
Translates to: VCGAASWHVSRLQGQ*EQQQSTQSYAHREP
Trigger: TGGTTCTCTGTGAGCGTAGGACTGTGTGCTTTGCTGCTGCTCTCACTGTCCCTGTAGCCTGCTGACGTGCCATGATGCTGCTCCACAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR TCA 90 bp GAGAGCCCCATGACAGCACTTGACACACTCAAGTGTGGTCTCTGGTaGTCATCTGACTGCTTGGATGAAGACATGGTGTGGTGTCTGTGG +
Preference number: 1 (lower is better)
Translates to: ESPMTALDTLKCGLW*SSDCLDEDMVWCLW
Trigger: CCACAGACACCACACCATGTCTTCATCCAAGCAGTCAGATGATCACCAGAGACCACACTTGAGTGTGTCAAGTGCTGTCATGGGGCTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR GCA 90 bp TTGTTAGCTTTAGCAGTTGCAGTGAGGGCAGGACAAGGCTACAGCTaGCTGCATCTACGAAGGAAAACCAAGAAAGGCAGTGGGCACGGA +
Preference number: 1 (lower is better)
Translates to: LLALAVAVRAGQGYS*LHLRRKTKKGSGHG
Trigger: TCCGTGCCCACTGCCTTTCTTGGTTTTCCTTCGTAGATGCAGGCAGCTGTAGCCTTGTCCTGCCCTCACTGCAACTGCTAAAGCTAACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
3UTR CCA 90 bp TCAAGTGTGGTCTCTGGTGATCATCTGACTGCTTGGATGAAGACATaGTGTGGTGTCTGTGGAGCAGCATCATGGCACGTCAGCAGGCTA +
Preference number: 1 (lower is better)
Translates to: SSVVSGDHLTAWMKT*CGVCGAASWHVSRL
Trigger: TAGCCTGCTGACGTGCCATGATGCTGCTCCACAGACACCACACCATGTCTTCATCCAAGCAGTCAGATGATCACCAGAGACCACACTTGA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR GCA 90 bp CGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGCAAAGCTaGGGGGCTGGGTTAGAGCAGTTTCGTAGAACACAGGGTGGGATT +
Preference number: 1 (lower is better)
Translates to: RCFVKNKAAKTEQQS*GAGLEQFRRTQGGI
Trigger: AATCCCACCCTGTGTTCTACGAAACTGCTCTAACCCAGCCCCGCAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR CCA 90 bp TCATGGAAAATAGGGATAAATCTAAGTCCCCAAGGGTCTCCTGCCTaGAGTACACAGGTTCCTTCATGCCTTTCAAGGGTGGCAGCTGCT +
Preference number: 1 (lower is better)
Translates to: SWKIGINLSPQGSPA*STQVPSCLSRVAAA
Trigger: AGCAGCTGCCACCCTTGAAAGGCATGAAGGAACCTGTGTACTCCAGGCAGGAGACCCTTGGGGACTTAGATTTATCCCTATTTTCCATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR CCA 90 bp TGGGCACGGAGAAGGAACTTGACTAAGGAAACCAACTACAAGAGTTaGGGGAAACTGAGGCTGGATGTGCCTTGGGATGTTCTTCATCTG +
Preference number: 1 (lower is better)
Translates to: WARRRNLTKETNYKS*GKLRLDVPWDVLHL
Trigger: CAGATGAAGAACATCCCAAGGCACATCCAGCCTCAGTTTCCCCCAACTCTTGTAGTTGGTTTCCTTAGTCAAGTTCCTTCTCCGTGCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
3UTR CCA 90 bp AGGCTACAGCTGCCTGCATCTACGAAGGAAAACCAAGAAAGGCAGTaGGCACGGAGAAGGAACTTGACTAAGGAAACCAACTACAAGAGT +
Preference number: 1 (lower is better)
Translates to: RLQLPASTKENQERQ*ARRRNLTKETNYKS
Trigger: ACTCTTGTAGTTGGTTTCCTTAGTCAAGTTCCTTCTCCGTGCCCACTGCCTTTCTTGGTTTTCCTTCGTAGATGCAGGCAGCTGTAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
3UTR TCA 90 bp AGCCACAGAGCAATGGGTTCTAAATGTCTCAATGTGATAGAACCCTaGAAACACCTGGCACAAACCATAGACGACTGCCTCTCTGGATGC +
Preference number: 1 (lower is better)
Translates to: SHRAMGSKCLNVIEP*KHLAQTIDDCLSGC
Trigger: GCATCCAGAGAGGCAGTCGTCTATGGTTTGTGCCAGGTGTTTTCAGGGTTCTATCACATTGAGACATTTAGAACCCATTGCTCTGTGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR GCA 90 bp ATGCCACCCTACCTTAATGAAGCCAAGACTGGCGTCAATCAACGCTaGTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGC +
Preference number: 1 (lower is better)
Translates to: MPPYLNEAKTGVNQR*FVKNKAAKTEQQSC
Trigger: GCAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTGACGCCAGTCTTGGCTTCATTAAGGTAGGGTGGCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR GCA 90 bp ATTATAGTGGAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTaGAGCTTTGGCGCCGTATATGCAGGCAGAGGGATAGCTCCAGCC +
Preference number: 1 (lower is better)
Translates to: IIVETKQQLRSTMLK*SFGAVYAGRGIAPA
Trigger: GGCTGGAGCTATCCCTCTGCCTGCATATACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTCCACTATAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR GCA 90 bp TGCCTGGAGTACACAGGTTCCTTCATGCCTTTCAAGGGTGGCAGCTaGTCCCTCCAGTCTACTTTAATCAATGATATTCATTTAAGCCTC +
Preference number: 1 (lower is better)
Translates to: CLEYTGSFMPFKGGS*SLQSTLINDIHLSL
Trigger: GAGGCTTAAATGAATATCATTGATTAAAGTAGACTGGAGGGAGCAGCTGCCACCCTTGAAAGGCATGAAGGAACCTGTGTACTCCAGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR CCA 90 bp CAACTGTGCAAGTACCGCTCTAAGCTCCTGAGAATCCAGCTTCTGTaGAAATGTGCAAAGCACTTACAAAAACGTAAATGGTCTTTAAAA +
Preference number: 1 (lower is better)
Translates to: QLCKYRSKLLRIQLL*KCAKHLQKRKWSLK
Trigger: TTTTAAAGACCATTTACGTTTTTGTAAGTGCTTTGCACATTTCCACAGAAGCTGGATTCTCAGGAGCTTAGAGCGGTACTTGCACAGTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR CCA 90 bp GATATAAATTTGACAACTGTTCTTTCTCTTCAGAACCTACACTCCTaGGTTCTTCCATTAATATCGACTATCCTGTCAACCACCTTCACA +
Preference number: 1 (lower is better)
Translates to: DINLTTVLSLQNLHS*VLPLISTILSTTFT
Trigger: TGTGAAGGTGGTTGACAGGATAGTCGATATTAATGGAAGAACCCAGGAGTGTAGGTTCTGAAGAGAAAGAACAGTTGTCAAATTTATATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR GCA 90 bp CCTCTTTCAGATCTGATTCAAATTACAGTTGTCAAAGCAATACAATaGAAAGGGAAAACTGCAACAACAATACACACACACACACACACA +
Preference number: 1 (lower is better)
Translates to: PLSDLIQITVVKAIQ*KGKTATTIHTHTHT
Trigger: TGTGTGTGTGTGTGTGTGTATTGTTGTTGCAGTTTTCCCTTTGCATTGTATTGCTTTGACAACTGTAATTTGAATCAGATCTGAAAGAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR-3UTR GCA 90 bp GAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGCGGGGCTGGGTTAGAGCAGTTACAGAGCAGCAAAGCTaGGGGGCTGGGTTAGAGCAG +
Preference number: 2 (lower is better)
Translates to: EQGSKNRAAKLRGWVRAVTEQQS*GAGLEQ
Trigger: CTGCTCTAACCCAGCCCCGCAGCTTTGCTGCTCTGT...AACTGCTCTAACCCAGCCCCGCAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR GCA 90 bp CTGCAGCAACTGTGCAAGTACCGCTCTAAGCTCCTGAGAATCCAGCTTCTGTGGTCCCCAAGGGTCTCCTaGCTGGAGTACACAGGTTCC +
Preference number: 2 (lower is better)
Translates to: LQQLCKYRSKLLRIQLLWSPRVS*LEYTGS
Trigger: GGAACCTGTGTACTCCAGGCAGGAGACCCTTGGGGA...CCACAGAAGCTGGATTCTCAGGAGCTTAGAGCGGTACTTGCACAGTTGCTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR-3UTR TCA 90 bp CAGCCCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCATAATATGCACCTATTaGGTTATATGCTCTGGGAGC +
Preference number: 2 (lower is better)
Translates to: QPSGGRGRRISEFEDSLVIICTY*VICSGS
Trigger: GCTCCCAGAGCATATAACTCAATAGGTGCATATTAT...GACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGGGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR GCA 90 bp CAGCCCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCAATGGCAGTGTTATATaGTGCTGTAACCTTGCTTTG +
Preference number: 2 (lower is better)
Translates to: QPSGGRGRRISEFEDSLVNGSVI*CCNLAL
Trigger: CAAAGCAAGGTTACAGCAGCATATAACACTGCCATT...GACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGGGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR CCA 90 bp GGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCTACAAAGTGGCAGAATTCACAAGCTaGGATGAGACTGTCATCTTC +
Preference number: 2 (lower is better)
Translates to: GGRGRRISEFEDSLVYKVAEFTS*DETVIF
Trigger: GAAGATGACAGTCTCATCCCAGCTTGTGAATTCTGC...CACTTTGTAGACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR CCA 90 bp CAGCCCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCATTAATATTCAAAACTaGGACATGTGTGGTTTGCTC +
Preference number: 2 (lower is better)
Translates to: QPSGGRGRRISEFEDSLVINIQN*DMCGLL
Trigger: GAGCAAACCACACATGTCCCAGTTTTGAATATTAAT...GACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGGGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR GCA 90 bp TGGCGTCAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGCAACAGAGCAGCAAAGCTaGGGGGCTGGGTTAGAGCAG +
Preference number: 2 (lower is better)
Translates to: WRQSTLLCKEQGSKNRAATEQQS*GAGLEQ
Trigger: CTGCTCTAACCCAGCCCCGCAGCTTTGCTGCTCTGT...TGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTGACGCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR GCA 90 bp CTGCAGCAACTGTGCAAGTACCGCTCTAAGCTCCTGAGAATCCAGCTTCTGTGGGGGACAGCAAAGCTCTaGACTTCTCTTCTATCAGAC +
Preference number: 2 (lower is better)
Translates to: LQQLCKYRSKLLRIQLLWGTAKL*TSLLSD
Trigger: GTCTGATAGAAGAGAAGTGCAGAGCTTTGCTGTCCC...CCACAGAAGCTGGATTCTCAGGAGCTTAGAGCGGTACTTGCACAGTTGCTGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR-3UTR CCA 90 bp ACATCTGCGAGGGAAAGACCCGAGGCTTTGGGACAGCAAAGCTCTGCACTTCTCGCAGAATTCACAAGCTaGGATGAGACTGTCATCTTC +
Preference number: 2 (lower is better)
Translates to: TSARERPEALGQQSSALLAEFTS*DETVIF
Trigger: GAAGATGACAGTCTCATCCCAGCTTGTGAATTCTGC...GAGAAGTGCAGAGCTTTGCTGTCCCAAAGCCTCGGGTCTTTCCCTCGCAGATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR-3UTR CCA 90 bp GAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGCGGGGCTGGGTTAGAGCAGTTGCAGAATTCACAAGCTaGGATGAGACTGTCATCTTC +
Preference number: 2 (lower is better)
Translates to: EQGSKNRAAKLRGWVRAVAEFTS*DETVIF
Trigger: GAAGATGACAGTCTCATCCCAGCTTGTGAATTCTGC...AACTGCTCTAACCCAGCCCCGCAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR CAA 90 bp TCTACGAAGGAAAACCAAGAAAGGCAGTGGGCACGGAGAAGGAACTaGACTAAGGAAACCAACTACAAGAGTTGGGGGAAACTGAGGCTG +
Preference number: 2 (lower is better)
Translates to: STKENQERQWARRRN*TKETNYKSWGKLRL
Trigger: CAGCCTCAGTTTCCCCCAACTCTTGTAGTTGGTTTCCTTAGTCAAGTTCCTTCTCCGTGCCCACTGCCTTTCTTGGTTTTCCTTCGTAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
3UTR-3UTR GCA 90 bp GAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGCGGGGCTGGGTTAGAGCAGTTGGGACATGTGTGGTTTaGTCTTATAACGCATATTCC +
Preference number: 2 (lower is better)
Translates to: EQGSKNRAAKLRGWVRAVGTCVV*SYNAYS
Trigger: GGAATATGCGTTATAAGAGCAAACCACACATGTCCC...AACTGCTCTAACCCAGCCCCGCAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR CAA 90 bp GGAAACCAACTACAAGAGTTGGGGGAAACTGAGGCTGGATGTGCCTaGGGATGTTCTTCATCTGTTACTGGGTGTGTAGTAAGATCCGAA +
Preference number: 2 (lower is better)
Translates to: GNQLQELGETEAGCA*GCSSSVTGCVVRSE
Trigger: TTCGGATCTTACTACACACCCAGTAACAGATGAAGAACATCCCAAGGCACATCCAGCCTCAGTTTCCCCCAACTCTTGTAGTTGGTTTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
3UTR-3UTR TCA 90 bp TGTAAAGAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGCGGGGCTGGGTTAGAAATCCATGTGTCTGCTaGTTCAAAGGGGGAAACAAG +
Preference number: 2 (lower is better)
Translates to: CKEQGSKNRAAKLRGWVRNPCVC*FKGGNK
Trigger: CTTGTTTCCCCCTTTGAATCAGCAGACACATGGATT...TCTAACCCAGCCCCGCAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR GCA 90 bp CTGCAGCAACTGTGCAAGTACCGCTCTAAGCTCCTGAGAATCCAGCTTCTGTGGAATGGCAGTGTTATATaGTGCTGTAACCTTGCTTTG +
Preference number: 2 (lower is better)
Translates to: LQQLCKYRSKLLRIQLLWNGSVI*CCNLAL
Trigger: CAAAGCAAGGTTACAGCAGCATATAACACTGCCATT...CCACAGAAGCTGGATTCTCAGGAGCTTAGAGCGGTACTTGCACAGTTGCTGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR-3UTR GCA 90 bp TTAGCAGTTGCAGTGAGGGCAGGACAAGGCTACAGCTGCCTGCATCTACGAAGGCATACTTATTCATCCTaGTTCAACACTGTCACAGAA +
Preference number: 2 (lower is better)
Translates to: LAVAVRAGQGYSCLHLRRHTYSS*FNTVTE
Trigger: TTCTGTGACAGTGTTGAAGCAGGATGAATAAGTATG...CCTTCGTAGATGCAGGCAGCTGTAGCCTTGTCCTGCCCTCACTGCAACTGCTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
3UTR-3UTR CCA 90 bp CCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAAAGGCAGAATTCACAAGCTaGGATGAGACTGTCATCTTC +
Preference number: 2 (lower is better)
Translates to: PATPLLISPSLLPKHSSKAEFTS*DETVIF
Trigger: GAAGATGACAGTCTCATCCCAGCTTGTGAATTCTGC...CTTTGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR TCA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAATAATATGCACCTATTaGGTTATATGCTCTGGGAGC +
Preference number: 2 (lower is better)
Translates to: APATPLLISPSLLPKHSSIICTY*VICSGS
Trigger: GCTCCCAGAGCATATAACTCAATAGGTGCATATTAT...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR GCA 90 bp CCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAAAGGGGACATGTGTGGTTTaGTCTTATAACGCATATTCC +
Preference number: 2 (lower is better)
Translates to: PATPLLISPSLLPKHSSKGTCVV*SYNAYS
Trigger: GGAATATGCGTTATAAGAGCAAACCACACATGTCCC...CTTTGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR GCA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAAATGGCAGTGTTATATaGTGCTGTAACCTTGCTTTG +
Preference number: 2 (lower is better)
Translates to: APATPLLISPSLLPKHSSNGSVI*CCNLAL
Trigger: CAAAGCAAGGTTACAGCAGCATATAACACTGCCATT...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR CCA 90 bp TTAGCAGTTGCAGTGAGGGCAGGACAAGGCTACAGCTGCCTGCATCTACGAAGGAGTAGGGAAGACTCTTaGAGCAAAATCATTTATTCT +
Preference number: 2 (lower is better)
Translates to: LAVAVRAGQGYSCLHLRRSREDS*SKIIYS
Trigger: AGAATAAATGATTTTGCTCCAAGAGTCTTCCCTACT...CCTTCGTAGATGCAGGCAGCTGTAGCCTTGTCCTGCCCTCACTGCAACTGCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
3UTR-3UTR TCA 90 bp AACACAGGGTGGGATTCAGGAGCCAAAGGCCTCAAAATAACTACTGACACACATAATCCATGTGTCTGCTaGTTCAAAGGGGGAAACAAG +
Preference number: 2 (lower is better)
Translates to: NTGWDSGAKGLKITTDTHNPCVC*FKGGNK
Trigger: CTTGTTTCCCCCTTTGAATCAGCAGACACATGGATT...ATGTGTGTCAGTAGTTATTTTGAGGCCTTTGGCTCCTGAATCCCACCCTGTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR TCA 90 bp CCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAAAGATAATATGCACCTATTaGGTTATATGCTCTGGGAGC +
Preference number: 2 (lower is better)
Translates to: PATPLLISPSLLPKHSSKIICTY*VICSGS
Trigger: GCTCCCAGAGCATATAACTCAATAGGTGCATATTAT...CTTTGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR CCA 90 bp GAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGCGGGGCTGGGTTAGAGCAGTTATTAATATTCAAAACTaGGACATGTGTGGTTTGCTC +
Preference number: 2 (lower is better)
Translates to: EQGSKNRAAKLRGWVRAVINIQN*DMCGLL
Trigger: GAGCAAACCACACATGTCCCAGTTTTGAATATTAAT...AACTGCTCTAACCCAGCCCCGCAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR TCA 90 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTAAATCCATGTGTCTGCTaGTTCAAAGGGGGAAACAAG +
Preference number: 2 (lower is better)
Translates to: ETKQQLRSTMLKCSFGAVNPCVC*FKGGNK
Trigger: CTTGTTTCCCCCTTTGAATCAGCAGACACATGGATT...TACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR TCA 90 bp AAGGGTGGCAGCTGCTCCCTCCAGTCTACTTTAATCAATGATATTCATTTAAGCAAGTGTGGTCTCTGGTaGTCATCTGACTGCTTGGAT +
Preference number: 2 (lower is better)
Translates to: KGGSCSLQSTLINDIHLSKCGLW*SSDCLD
Trigger: ATCCAAGCAGTCAGATGATCACCAGAGACCACACTT...GCTTAAATGAATATCATTGATTAAAGTAGACTGGAGGGAGCAGCTGCCACCCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR-3UTR CCA 90 bp ATGGAAAATAGGGATAAATCTAAGTCCCCAAGGGTCTCCTGCCTGGAGTACACACAGAACCTACACTCCTaGGTTCTTCCATTAATATCG +
Preference number: 2 (lower is better)
Translates to: MENRDKSKSPRVSCLEYTQNLHS*VLPLIS
Trigger: CGATATTAATGGAAGAACCCAGGAGTGTAGGTTCTG...TGTGTACTCCAGGCAGGAGACCCTTGGGGACTTAGATTTATCCCTATTTTCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR-3UTR CCA 90 bp GACTGGCGTCAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCACAGAACCTACACTCCTaGGTTCTTCCATTAATATCG +
Preference number: 2 (lower is better)
Translates to: DWRQSTLLCKEQGSKNRAQNLHS*VLPLIS
Trigger: CGATATTAATGGAAGAACCCAGGAGTGTAGGTTCTG...TGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTGACGCCAGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR TCA 90 bp AGGAAATGCAGCTTAGGCATACTCAAAAAGTTTGTGTCTATTCTTGGGAGCACGAATCCATGTGTCTGCTaGTTCAAAGGGGGAAACAAG +
Preference number: 2 (lower is better)
Translates to: RKCSLGILKKFVSILGSTNPCVC*FKGGNK
Trigger: CTTGTTTCCCCCTTTGAATCAGCAGACACATGGATT...CGTGCTCCCAAGAATAGACACAAACTTTTTGAGTATGCCTAAGCTGCATTTCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
3UTR-3UTR TCA 90 bp ATGGAAAATAGGGATAAATCTAAGTCCCCAAGGGTCTCCTGCCTGGAGTACACAATAATATGCACCTATTaGGTTATATGCTCTGGGAGC +
Preference number: 2 (lower is better)
Translates to: MENRDKSKSPRVSCLEYTIICTY*VICSGS
Trigger: GCTCCCAGAGCATATAACTCAATAGGTGCATATTAT...TGTGTACTCCAGGCAGGAGACCCTTGGGGACTTAGATTTATCCCTATTTTCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR-3UTR GCA 90 bp CAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGGGGACATGTGTGGTTTaGTCTTATAACGCATATTCC +
Preference number: 2 (lower is better)
Translates to: QSTLLCKEQGSKNRAAKLGTCVV*SYNAYS
Trigger: GGAATATGCGTTATAAGAGCAAACCACACATGTCCC...CAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR GCA 90 bp AACACAGGGTGGGATTCAGGAGCCAAAGGCCTCAAAATAACTACTGACACACATAATGGCAGTGTTATATaGTGCTGTAACCTTGCTTTG +
Preference number: 2 (lower is better)
Translates to: NTGWDSGAKGLKITTDTHNGSVI*CCNLAL
Trigger: CAAAGCAAGGTTACAGCAGCATATAACACTGCCATT...ATGTGTGTCAGTAGTTATTTTGAGGCCTTTGGCTCCTGAATCCCACCCTGTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR GCA 90 bp ACTCAGGAGTCATCATTATCCCTAGCTGATTACATGCTATCAGTATTTAACAAATGGCTTCTGCTGCTGTaGCATGATGTTGGTCCACGG +
Preference number: 2 (lower is better)
Translates to: TQESSLSLADYMLSVFNKWLLLL*HDVGPR
Trigger: CCGTGGACCAACATCATGGCACAGCAGCAGAAGCCA...TTTGTTAAATACTGATAGCATGTAATCAGCTAGGGATAATGATGACTCCTGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
3UTR-3UTR CCA 90 bp AGGAAATGCAGCTTAGGCATACTCAAAAAGTTTGTGTCTATTCTTGGGAGCACGGCAGAATTCACAAGCTaGGATGAGACTGTCATCTTC +
Preference number: 2 (lower is better)
Translates to: RKCSLGILKKFVSILGSTAEFTS*DETVIF
Trigger: GAAGATGACAGTCTCATCCCAGCTTGTGAATTCTGC...CGTGCTCCCAAGAATAGACACAAACTTTTTGAGTATGCCTAAGCTGCATTTCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
3UTR-3UTR CCA 90 bp CCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAAAGATTAATATTCAAAACTaGGACATGTGTGGTTTGCTC +
Preference number: 2 (lower is better)
Translates to: PATPLLISPSLLPKHSSKINIQN*DMCGLL
Trigger: GAGCAAACCACACATGTCCCAGTTTTGAATATTAAT...CTTTGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR CCA 90 bp TGTAAAGAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGCGGGGCTGGGTTAGAATTAATATTCAAAACTaGGACATGTGTGGTTTGCTC +
Preference number: 2 (lower is better)
Translates to: CKEQGSKNRAAKLRGWVRINIQN*DMCGLL
Trigger: GAGCAAACCACACATGTCCCAGTTTTGAATATTAAT...TCTAACCCAGCCCCGCAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR TCA 90 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTAATAATATGCACCTATTaGGTTATATGCTCTGGGAGC +
Preference number: 2 (lower is better)
Translates to: ETKQQLRSTMLKCSFGAVIICTY*VICSGS
Trigger: GCTCCCAGAGCATATAACTCAATAGGTGCATATTAT...TACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR TCA 90 bp AAGGGTGGCAGCTGCTCCCTCCAGTCTACTTTAATCAATGATATTCATTTAAGCATTTGTGACTGTCTTTaGATCAGCTGGGAAGAACGT +
Preference number: 2 (lower is better)
Translates to: KGGSCSLQSTLINDIHLSICDCL*ISWEER
Trigger: ACGTTCTTCCCAGCTGATTCAAAGACAGTCACAAAT...GCTTAAATGAATATCATTGATTAAAGTAGACTGGAGGGAGCAGCTGCCACCCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR-3UTR GCA 90 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTAAATGGCAGTGTTATATaGTGCTGTAACCTTGCTTTG +
Preference number: 2 (lower is better)
Translates to: ETKQQLRSTMLKCSFGAVNGSVI*CCNLAL
Trigger: CAAAGCAAGGTTACAGCAGCATATAACACTGCCATT...TACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR CCA 90 bp AGGAAATGCAGCTTAGGCATACTCAAAAAGTTTGTGTCTATTCTTGGGAGCACGAGAGCCACAGAGCAATaGGTTCTAAATGTCTCAATG +
Preference number: 2 (lower is better)
Translates to: RKCSLGILKKFVSILGSTRATEQ*VLNVSM
Trigger: CATTGAGACATTTAGAACCCATTGCTCTGTGGCTCT...CGTGCTCCCAAGAATAGACACAAACTTTTTGAGTATGCCTAAGCTGCATTTCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
3UTR-3UTR CCA 90 bp ATGGAAAATAGGGATAAATCTAAGTCCCCAAGGGTCTCCTGCCTGGAGTACACAAAGCAAAATCTCAAGTaGCAGACACTCAGCATTTTA +
Preference number: 2 (lower is better)
Translates to: MENRDKSKSPRVSCLEYTKQNLK*QTLSIL
Trigger: TAAAATGCTGAGTGTCTGCCACTTGAGATTTTGCTT...TGTGTACTCCAGGCAGGAGACCCTTGGGGACTTAGATTTATCCCTATTTTCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR-3UTR CCA 90 bp GACTGGCGTCAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAATTAATATTCAAAACTaGGACATGTGTGGTTTGCTC +
Preference number: 2 (lower is better)
Translates to: DWRQSTLLCKEQGSKNRAINIQN*DMCGLL
Trigger: GAGCAAACCACACATGTCCCAGTTTTGAATATTAAT...TGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTGACGCCAGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR TCA 90 bp GTAGTGATTATAGTGGAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAATCCATGTGTCTGCTaGTTCAAAGGGGGAAACAAG +
Preference number: 2 (lower is better)
Translates to: VVIIVETKQQLRSTMLKCNPCVC*FKGGNK
Trigger: CTTGTTTCCCCCTTTGAATCAGCAGACACATGGATT...GCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTCCACTATAATCACTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR GCA 90 bp ATGGTAAAATGTAAGTGTATCCATCCTCTTTACCAAAAGCAAATGCCACCCTACGGGACATGTGTGGTTTaGTCTTATAACGCATATTCC +
Preference number: 2 (lower is better)
Translates to: MVKCKCIHPLYQKQMPPYGTCVV*SYNAYS
Trigger: GGAATATGCGTTATAAGAGCAAACCACACATGTCCC...GTAGGGTGGCATTTGCTTTTGGTAAAGAGGATGGATACACTTACATTTTACCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR CCA 90 bp CTAAATGAACACCATAGAAAGACTACTGGACTCTGGATTTTCAGAGCCAATTCTAGAGCCACAGAGCAATaGGTTCTAAATGTCTCAATG +
Preference number: 2 (lower is better)
Translates to: LNEHHRKTTGLWIFRANSRATEQ*VLNVSM
Trigger: CATTGAGACATTTAGAACCCATTGCTCTGTGGCTCT...AGAATTGGCTCTGAAAATCCAGAGTCCAGTAGTCTTTCTATGGTGTTCATTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR-3UTR GCA 90 bp GTAGTGATTATAGTGGAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCGGGACATGTGTGGTTTaGTCTTATAACGCATATTCC +
Preference number: 2 (lower is better)
Translates to: VVIIVETKQQLRSTMLKCGTCVV*SYNAYS
Trigger: GGAATATGCGTTATAAGAGCAAACCACACATGTCCC...GCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTCCACTATAATCACTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR TCA 72 bp ATCCCAGCCCTCGGGAGGCAGAGGCAGGCGGATTTCTaGGTTCGAGGACAGCCTGGTCTACAAAGTGAGTTC +
Preference number: 3 (lower is better)
Translates to: IPALGRQRQADF*VRGQPGLQSEF
Trigger: GAACTCACTTTGTAGACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGGGCTGGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR TCA 72 bp GCAGCATCATGGCACGTCAGCAGGCTACAGGGACAGTaGGAGCAGCAGCAAAGCACACAGTCCTACGCTCAC +
Preference number: 3 (lower is better)
Translates to: AASWHVSRLQGQ*EQQQSTQSYAH
Trigger: GTGAGCGTAGGACTGTGTGCTTTGCTGCTGCTCTCACTGTCCCTGTAGCCTGCTGACGTGCCATGATGCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR GCA 72 bp CAAGGGTCTCCTGCCTGGAGTACACAGGTTCCTTCATaGCTTTCAAGGGTGGCAGCTGCTCCCTCCAGTCTA +
Preference number: 3 (lower is better)
Translates to: QGSPAWSTQVPS*LSRVAAAPSSL
Trigger: TAGACTGGAGGGAGCAGCTGCCACCCTTGAAAGGCATGAAGGAACCTGTGTACTCCAGGCAGGAGACCCTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR TCA 72 bp GGTGGAAACCACTGCAGCATGTTTGGTTGGCATGGGTaGAAGCCCTCAGCCACATACTTGGTGTGCCTTGTG +
Preference number: 3 (lower is better)
Translates to: GGNHCSMFGWHG*KPSATYLVCLV
Trigger: CACAAGGCACACCAAGTATGTGGCTGAGGGCTTTCACCCATGCCAACCAAACATGCTGCAGTGGTTTCCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
3UTR CCA 72 bp TACGGGTGGAAACCACTGCAGCATGTTTGGTTGGCATaGGTGAAAGCCCTCAGCCACATACTTGGTGTGCCT +
Preference number: 3 (lower is better)
Translates to: YGWKPLQHVWLA*VKALSHILGVP
Trigger: AGGCACACCAAGTATGTGGCTGAGGGCTTTCACCCATGCCAACCAAACATGCTGCAGTGGTTTCCACCCGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
3UTR GCA 72 bp AGAACCAGCCTAAAGGTAGATGTCTTCAGCCACATCTaGGAGGGAAAGACCCGAGGCTTTGGGACAGCAAAG +
Preference number: 3 (lower is better)
Translates to: RTSLKVDVFSHI*EGKTRGFGTAK
Trigger: CTTTGCTGTCCCAAAGCCTCGGGTCTTTCCCTCGCAGATGTGGCTGAAGACATCTACCTTTAGGCTGGTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR CCA 72 bp GTCTCTGGTGATCATCTGACTGCTTGGATGAAGACATaGTGTGGTGTCTGTGGAGCAGCATCATGGCACGTC +
Preference number: 3 (lower is better)
Translates to: VSGDHLTAWMKT*CGVCGAASWHV
Trigger: GACGTGCCATGATGCTGCTCCACAGACACCACACCATGTCTTCATCCAAGCAGTCAGATGATCACCAGAGAC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR-3UTR CAA 90 bp GCCACATCTGCGAGGGAAAGACCCGAGGCTTTGGGACAGCAAAGCTCTGCACTTAATTCAGCTGTCATTTaGGCAGCTGTGTTTCAGGAA +
Preference number: 3 (lower is better)
Translates to: ATSARERPEALGQQSSALNSAVI*AAVFQE
Trigger: TTCCTGAAACACAGCTGCCAAAATGACAGCTGAATT...AAGTGCAGAGCTTTGCTGTCCCAAAGCCTCGGGTCTTTCCCTCGCAGATGTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR GCA 72 bp TTAGCAGTTGCAGTGAGGGCAGGACAAGGCTACAGCTaGCTGCATCTACGAAGGAAAACCAAGAAAGGCAGT +
Preference number: 3 (lower is better)
Translates to: LAVAVRAGQGYS*LHLRRKTKKGS
Trigger: ACTGCCTTTCTTGGTTTTCCTTCGTAGATGCAGGCAGCTGTAGCCTTGTCCTGCCCTCACTGCAACTGCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
3UTR-3UTR CAA 90 bp GCCACATCTGCGAGGGAAAGACCCGAGGCTTTGGGACAGCAAAGCTCTGCACTTCATAATATGCACCTATaGAGTTATATGCTCTGGGAG +
Preference number: 3 (lower is better)
Translates to: ATSARERPEALGQQSSALHNMHL*SYMLWE
Trigger: CTCCCAGAGCATATAACTCAATAGGTGCATATTATG...AAGTGCAGAGCTTTGCTGTCCCAAAGCCTCGGGTCTTTCCCTCGCAGATGTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR-3UTR CAA 90 bp GAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGCGGGGCTGGGTTAGAGCAGTTAAGCCCCAAACTATGTaGCTCCTTCTCACAATAGTG +
Preference number: 3 (lower is better)
Translates to: EQGSKNRAAKLRGWVRAVKPQTM*LLLTIV
Trigger: CACTATTGTGAGAAGGAGCAACATAGTTTGGGGCTT...AACTGCTCTAACCCAGCCCCGCAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR GCA 72 bp GTAAAGAACAAGGCAGCAAAAACAGAGCAGCAAAGCTaGGGGGCTGGGTTAGAGCAGTTTCGTAGAACACAG +
Preference number: 3 (lower is better)
Translates to: VKNKAAKTEQQS*GAGLEQFRRTQ
Trigger: CTGTGTTCTACGAAACTGCTCTAACCCAGCCCCGCAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTCTTTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR CCA 72 bp ATAGGGATAAATCTAAGTCCCCAAGGGTCTCCTGCCTaGAGTACACAGGTTCCTTCATGCCTTTCAAGGGTG +
Preference number: 3 (lower is better)
Translates to: IGINLSPQGSPA*STQVPSCLSRV
Trigger: CACCCTTGAAAGGCATGAAGGAACCTGTGTACTCCAGGCAGGAGACCCTTGGGGACTTAGATTTATCCCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR CCA 72 bp GAAATCAGTTACGGGTGGAAACCACTGCAGCATGTTTaGTTGGCATGGGTGAAAGCCCTCAGCCACATACTT +
Preference number: 3 (lower is better)
Translates to: EISYGWKPLQHV*LAWVKALSHIL
Trigger: AAGTATGTGGCTGAGGGCTTTCACCCATGCCAACCAAACATGCTGCAGTGGTTTCCACCCGTAACTGATTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
3UTR CCA 72 bp ACTGGGTGTGTAGTAAGATCCGAAATCAGTTACGGGTaGAAACCACTGCAGCATGTTTGGTTGGCATGGGTG +
Preference number: 3 (lower is better)
Translates to: TGCVVRSEISYG*KPLQHVWLAWV
Trigger: CACCCATGCCAACCAAACATGCTGCAGTGGTTTCCACCCGTAACTGATTTCGGATCTTACTACACACCCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
3UTR CCA 72 bp CTGCCTGCATCTACGAAGGAAAACCAAGAAAGGCAGTaGGCACGGAGAAGGAACTTGACTAAGGAAACCAAC +
Preference number: 3 (lower is better)
Translates to: LPASTKENQERQ*ARRRNLTKETN
Trigger: GTTGGTTTCCTTAGTCAAGTTCCTTCTCCGTGCCCACTGCCTTTCTTGGTTTTCCTTCGTAGATGCAGGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
3UTR GCA 72 bp GAGGGAAAGACCCGAGGCTTTGGGACAGCAAAGCTCTaGACTTCTCTTCTATCAGACAATCTATCACAGCTA +
Preference number: 3 (lower is better)
Translates to: EGKTRGFGTAKL*TSLLSDNLSQL
Trigger: TAGCTGTGATAGATTGTCTGATAGAAGAGAAGTGCAGAGCTTTGCTGTCCCAAAGCCTCGGGTCTTTCCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR CCA 72 bp GGCTGGATGTGCCTTGGGATGTTCTTCATCTGTTACTaGGTGTGTAGTAAGATCCGAAATCAGTTACGGGTG +
Preference number: 3 (lower is better)
Translates to: GWMCLGMFFICY*VCSKIRNQLRV
Trigger: CACCCGTAACTGATTTCGGATCTTACTACACACCCAGTAACAGATGAAGAACATCCCAAGGCACATCCAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
3UTR-3UTR CAA 90 bp GAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGCGGGGCTGGGTTAGAGCAGTTCATAATATGCACCTATaGAGTTATATGCTCTGGGAG +
Preference number: 3 (lower is better)
Translates to: EQGSKNRAAKLRGWVRAVHNMHL*SYMLWE
Trigger: CTCCCAGAGCATATAACTCAATAGGTGCATATTATG...AACTGCTCTAACCCAGCCCCGCAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR TCA 72 bp AAAACCAAGAAAGGCAGTGGGCACGGAGAAGGAACTTaGCTAAGGAAACCAACTACAAGAGTTGGGGGAAAC +
Preference number: 3 (lower is better)
Translates to: KTKKGSGHGEGT*LRKPTTRVGGN
Trigger: GTTTCCCCCAACTCTTGTAGTTGGTTTCCTTAGTCAAGTTCCTTCTCCGTGCCCACTGCCTTTCTTGGTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
3UTR GCA 72 bp GAAAATAGGGATAAATCTAAGTCCCCAAGGGTCTCCTaGCTGGAGTACACAGGTTCCTTCATGCCTTTCAAG +
Preference number: 3 (lower is better)
Translates to: ENRDKSKSPRVS*LEYTGSFMPFK
Trigger: CTTGAAAGGCATGAAGGAACCTGTGTACTCCAGGCAGGAGACCCTTGGGGACTTAGATTTATCCCTATTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR CCA 72 bp AGAAGGAACTTGACTAAGGAAACCAACTACAAGAGTTaGGGGAAACTGAGGCTGGATGTGCCTTGGGATGTT +
Preference number: 3 (lower is better)
Translates to: RRNLTKETNYKS*GKLRLDVPWDV
Trigger: AACATCCCAAGGCACATCCAGCCTCAGTTTCCCCCAACTCTTGTAGTTGGTTTCCTTAGTCAAGTTCCTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
3UTR-3UTR CAA 90 bp AGAACCCTGAAAACACCTGGCACAAACCATAGACGACTGCCTCTCTGGATGCAACATAATATGCACCTATaGAGTTATATGCTCTGGGAG +
Preference number: 3 (lower is better)
Translates to: RTLKTPGTNHRRLPLWMQHNMHL*SYMLWE
Trigger: CTCCCAGAGCATATAACTCAATAGGTGCATATTATG...TTGCATCCAGAGAGGCAGTCGTCTATGGTTTGTGCCAGGTGTTTTCAGGGTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR CAA 90 bp TGGCGTCAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGCAAAGCCCCAAACTATGTaGCTCCTTCTCACAATAGTG +
Preference number: 3 (lower is better)
Translates to: WRQSTLLCKEQGSKNRAAKPQTM*LLLTIV
Trigger: CACTATTGTGAGAAGGAGCAACATAGTTTGGGGCTT...TGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTGACGCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR GCA 72 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTaGAGCTTTGGCGCCGTATATGCAGGCAGAGGGATA +
Preference number: 3 (lower is better)
Translates to: ETKQQLRSTMLK*SFGAVYAGRGI
Trigger: TATCCCTCTGCCTGCATATACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR CAA 90 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTAAAGCCCCAAACTATGTaGCTCCTTCTCACAATAGTG +
Preference number: 3 (lower is better)
Translates to: ETKQQLRSTMLKCSFGAVKPQTM*LLLTIV
Trigger: CACTATTGTGAGAAGGAGCAACATAGTTTGGGGCTT...TACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR GCA 72 bp TACACAGGTTCCTTCATGCCTTTCAAGGGTGGCAGCTaGTCCCTCCAGTCTACTTTAATCAATGATATTCAT +
Preference number: 3 (lower is better)
Translates to: YTGSFMPFKGGS*SLQSTLINDIH
Trigger: ATGAATATCATTGATTAAAGTAGACTGGAGGGAGCAGCTGCCACCCTTGAAAGGCATGAAGGAACCTGTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR-3UTR CAA 90 bp AACACAGGGTGGGATTCAGGAGCCAAAGGCCTCAAAATAACTACTGACACACATCATAATATGCACCTATaGAGTTATATGCTCTGGGAG +
Preference number: 3 (lower is better)
Translates to: NTGWDSGAKGLKITTDTHHNMHL*SYMLWE
Trigger: CTCCCAGAGCATATAACTCAATAGGTGCATATTATG...ATGTGTGTCAGTAGTTATTTTGAGGCCTTTGGCTCCTGAATCCCACCCTGTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR CAA 90 bp ACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTATATAAGCCCCAAACTATGTaGCTCCTTCTCACAATAGTG +
Preference number: 3 (lower is better)
Translates to: TKQQLRSTMLKCSFGAVYKPQTM*LLLTIV
Trigger: CACTATTGTGAGAAGGAGCAACATAGTTTGGGGCTT...ATATACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR TCA 72 bp TATATTTTACTTTTAGCTGAACATAAAGAGTCTGATTaGAGCCGGCCGTGGTGGCGCACACCTTTAATCCCA +
Preference number: 3 (lower is better)
Translates to: YILLLAEHKESD*SRPWWRTPLIP
Trigger: TGGGATTAAAGGTGTGCGCCACCACGGCCGGCTTCAATCAGACTCTTTATGTTCAGCTAAAAGTAAAATATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR GCA 72 bp AATGTAAGTGTATCCATCCTCTTTACCAAAAGCAAATaGCACCCTACCTTAATGAAGCCAAGACTGGCGTCA +
Preference number: 3 (lower is better)
Translates to: NVSVSILFTKSK*HPTLMKPRLAS
Trigger: TGACGCCAGTCTTGGCTTCATTAAGGTAGGGTGGCATTTGCTTTTGGTAAAGAGGATGGATACACTTACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR CAA 90 bp ACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTATATCATAATATGCACCTATaGAGTTATATGCTCTGGGAG +
Preference number: 3 (lower is better)
Translates to: TKQQLRSTMLKCSFGAVYHNMHL*SYMLWE
Trigger: CTCCCAGAGCATATAACTCAATAGGTGCATATTATG...ATATACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR CAA 90 bp GTAGTGATTATAGTGGAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAAGCCCCAAACTATGTaGCTCCTTCTCACAATAGTG +
Preference number: 3 (lower is better)
Translates to: VVIIVETKQQLRSTMLKCKPQTM*LLLTIV
Trigger: CACTATTGTGAGAAGGAGCAACATAGTTTGGGGCTT...GCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTCCACTATAATCACTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR-3UTR CAA 90 bp GAATCAGCTGGGAAGAACGTCAATGACTGTATGCAAATGAATAAAATGTCCATAGCATACTCAAAAAGTTaGTGTCTATTCTTGGGAGCA +
Preference number: 3 (lower is better)
Translates to: ESAGKNVNDCMQMNKMSIAYSKS*CLFLGA
Trigger: TGCTCCCAAGAATAGACACAAACTTTTTGAGTATGC...TATGGACATTTTATTCATTTGCATACAGTCATTGACGTTCTTCCCAGCTGATTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
3UTR-3UTR CAA 90 bp ACTCAGGAGTCATCATTATCCCTAGCTGATTACATGCTATCAGTATTTAACAAAAATTCAGCTGTCATTTaGGCAGCTGTGTTTCAGGAA +
Preference number: 3 (lower is better)
Translates to: TQESSLSLADYMLSVFNKNSAVI*AAVFQE
Trigger: TTCCTGAAACACAGCTGCCAAAATGACAGCTGAATT...TTTGTTAAATACTGATAGCATGTAATCAGCTAGGGATAATGATGACTCCTGAGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
3UTR GCA 72 bp CTGTCATTAATATTCAAAACTGGGACATGTGTGGTTTaGTCTTATAACGCATATTCCTTCTCTTCTGGTTTT +
Preference number: 3 (lower is better)
Translates to: LSLIFKTGTCVV*SYNAYSFSSGF
Trigger: AAAACCAGAAGAGAAGGAATATGCGTTATAAGAGCAAACCACACATGTCCCAGTTTTGAATATTAATGACAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp TCCCAGCCCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGAGCAGCGGCAGCGGCTaGGGCTGCATGCTGCTGTGC +
Preference number: 4 (lower is better)
Translates to: SQPSGGRGRRISEFEDSLSSGSG*GCMLLC
Trigger: GCACAGCAGCATGCAGCCGCAGCCGCTGCCGCTGCT...CAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGGGCTGGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp TCCCAGCCCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGAGGTTCCAGATTCTTaGCGTGGAGTCTCCAGACCC +
Preference number: 4 (lower is better)
Translates to: SQPSGGRGRRISEFEDSLEVPDS*RGVSRP
Trigger: GGGTCTGGAGACTCCACGGCAAGAATCTGGAACCTC...CAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGGGCTGGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp TCCCAGCCCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGTTTGCAGATCCTTGCTaGTTAGTGGCGGCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: SQPSGGRGRRISEFEDSLFADPC*LVAAAA
Trigger: CGCTGCTGCCGCCACTAACCAGCAAGGATCTGCAAA...CAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGGGCTGGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp TCCCAGCCCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGTCCAGATTCTTGCCGTaGAGTCTCCAGACCCTGATG +
Preference number: 4 (lower is better)
Translates to: SQPSGGRGRRISEFEDSLSRFLP*SLQTLM
Trigger: CATCAGGGTCTGGAGACTCCACGGCAAGAATCTGGA...CAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGGGCTGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp CAGCCCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCTCCAGATTCTTGCCGTaGAGTCTCCAGACCCTGATG +
Preference number: 4 (lower is better)
Translates to: QPSGGRGRRISEFEDSLVSRFLP*SLQTLM
Trigger: CATCAGGGTCTGGAGACTCCACGGCAAGAATCTGGA...GACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGGGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAAGCAGCGGCAGCGGCTaGGGCTGCATGCTGCTGTGC +
Preference number: 4 (lower is better)
Translates to: APATPLLISPSLLPKHSSSSGSG*GCMLLC
Trigger: GCACAGCAGCATGCAGCCGCAGCCGCTGCCGCTGCT...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp TCCCAGCCCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGTATGCTGCCCCAAGGTaGTGGCAAGATTACCATCTT +
Preference number: 4 (lower is better)
Translates to: SQPSGGRGRRISEFEDSLYAAPR*WQDYHL
Trigger: AAGATGGTAATCTTGCCAGCACCTTGGGGCAGCATA...CAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGGGCTGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp TCCCAGCCCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCAAAAGAACCACTTaGCAGATACCTGCCATCAGG +
Preference number: 4 (lower is better)
Translates to: SQPSGGRGRRISEFEDSLVKRTT*QIPAIR
Trigger: CCTGATGGCAGGTATCTGGCAAGTGGTTCTTTTGAC...CAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGGGCTGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp GCCACATCTGCGAGGGAAAGACCCGAGGCTTTGGGACAGCAAAGCTCTGCACTTGATGATAGAGATGAGTaGAGCGGGTGGAACCAGGGC +
Preference number: 4 (lower is better)
Translates to: ATSARERPEALGQQSSALDDRDE*SGWNQG
Trigger: GCCCTGGTTCCACCCGCTGCACTCATCTCTATCATC...AAGTGCAGAGCTTTGCTGTCCCAAAGCCTCGGGTCTTTCCCTCGCAGATGTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR GCA 90 bp GGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCTACAAAGTGGATGATAGAGATGAGTaGAGCGGGTGGAACCAGGGC +
Preference number: 4 (lower is better)
Translates to: GGRGRRISEFEDSLVYKVDDRDE*SGWNQG
Trigger: GCCCTGGTTCCACCCGCTGCACTCATCTCTATCATC...CACTTTGTAGACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp GGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCTACAAAGTGGAGGTTCCAGATTCTTaGCGTGGAGTCTCCAGACCC +
Preference number: 4 (lower is better)
Translates to: GGRGRRISEFEDSLVYKVEVPDS*RGVSRP
Trigger: GGGTCTGGAGACTCCACGGCAAGAATCTGGAACCTC...CACTTTGTAGACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp TCCCAGCCCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGAAGGTGTTGTTGCTCTaGCAGTCAACATCCAATGCT +
Preference number: 4 (lower is better)
Translates to: SQPSGGRGRRISEFEDSLKVLLL*QSTSNA
Trigger: AGCATTGGATGTTGACTGGCAGAGCAACAACACCTT...CAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGGGCTGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp GGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCTACAAAGTGTTTGCAGATCCTTGCTaGTTAGTGGCGGCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: GGRGRRISEFEDSLVYKVFADPC*LVAAAA
Trigger: CGCTGCTGCCGCCACTAACCAGCAAGGATCTGCAAA...CACTTTGTAGACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp CAGCCCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCTGGATTATTTGTCCCTaGTCCTGTTGGACTCCACTT +
Preference number: 4 (lower is better)
Translates to: QPSGGRGRRISEFEDSLVWIICP*SCWTPL
Trigger: AAGTGGAGTCCAACAGGACCAGGGACAAATAATCCA...GACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGGGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp CAGCCCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCTCCATCATGTCAGTGTaGTTATTTGCGATGGTATGT +
Preference number: 4 (lower is better)
Translates to: QPSGGRGRRISEFEDSLVSIMSV*LFAMVC
Trigger: ACATACCATCGCAAATAATCACACTGACATGATGGA...GACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGGGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTAAGCAGCGGCAGCGGCTaGGGCTGCATGCTGCTGTGC +
Preference number: 4 (lower is better)
Translates to: ETKQQLRSTMLKCSFGAVSSGSG*GCMLLC
Trigger: GCACAGCAGCATGCAGCCGCAGCCGCTGCCGCTGCT...TACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp GAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGCGGGGCTGGGTTAGAGCAGTTTTTGCAGATCCTTGCTaGTTAGTGGCGGCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: EQGSKNRAAKLRGWVRAVFADPC*LVAAAA
Trigger: CGCTGCTGCCGCCACTAACCAGCAAGGATCTGCAAA...AACTGCTCTAACCCAGCCCCGCAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp ACATCTGCGAGGGAAAGACCCGAGGCTTTGGGACAGCAAAGCTCTGCACTTCTCTCCAGATTCTTGCCGTaGAGTCTCCAGACCCTGATG +
Preference number: 4 (lower is better)
Translates to: TSARERPEALGQQSSALLSRFLP*SLQTLM
Trigger: CATCAGGGTCTGGAGACTCCACGGCAAGAATCTGGA...GAGAAGTGCAGAGCTTTGCTGTCCCAAAGCCTCGGGTCTTTCCCTCGCAGATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR TCA 90 bp TCCCAGCCCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGTATATACCAAGAAGTTaGCCTCATCACTGCTTATAC +
Preference number: 4 (lower is better)
Translates to: SQPSGGRGRRISEFEDSLYIPRS*PHHCLY
Trigger: GTATAAGCAGTGATGAGGTCAACTTCTTGGTATATA...CAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGGGCTGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp GGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCTACAAAGTGTATGCGCATCCCAAATaGTGGTGGTCTTATCTACGC +
Preference number: 4 (lower is better)
Translates to: GGRGRRISEFEDSLVYKVYAHPK*WWSYLR
Trigger: GCGTAGATAAGACCACCATCATTTGGGATGCGCATA...CACTTTGTAGACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp AAGGGTGGCAGCTGCTCCCTCCAGTCTACTTTAATCAATGATATTCATTTAAGCAGCAGCGGCAGCGGCTaGGGCTGCATGCTGCTGTGC +
Preference number: 4 (lower is better)
Translates to: KGGSCSLQSTLINDIHLSSSGSG*GCMLLC
Trigger: GCACAGCAGCATGCAGCCGCAGCCGCTGCCGCTGCT...GCTTAAATGAATATCATTGATTAAAGTAGACTGGAGGGAGCAGCTGCCACCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR GCA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAGAGGTTCCAGATTCTTaGCGTGGAGTCTCCAGACCC +
Preference number: 4 (lower is better)
Translates to: APATPLLISPSLLPKHSSEVPDS*RGVSRP
Trigger: GGGTCTGGAGACTCCACGGCAAGAATCTGGAACCTC...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp CAGCCCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCTGTCTTGTCCTAATTTaGAGACGTGAATGCACATAT +
Preference number: 4 (lower is better)
Translates to: QPSGGRGRRISEFEDSLVCLVLI*RRECTY
Trigger: ATATGTGCATTCACGTCTGCAAATTAGGACAAGACA...GACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGGGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCATTTGCAGATCCTTGCTaGTTAGTGGCGGCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: APATPLLISPSLLPKHSSFADPC*LVAAAA
Trigger: CGCTGCTGCCGCCACTAACCAGCAAGGATCTGCAAA...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp TCCCAGCCCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGTGTTTTGTCAAAGTATaGATGCAAATCCCTCTGTCT +
Preference number: 4 (lower is better)
Translates to: SQPSGGRGRRISEFEDSLCFVKV*MQIPLS
Trigger: AGACAGAGGGATTTGCATCCATACTTTGACAAAACA...CAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGGGCTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp ACATCTGCGAGGGAAAGACCCGAGGCTTTGGGACAGCAAAGCTCTGCACTTCTCTATGCGCATCCCAAATaGTGGTGGTCTTATCTACGC +
Preference number: 4 (lower is better)
Translates to: TSARERPEALGQQSSALLYAHPK*WWSYLR
Trigger: GCGTAGATAAGACCACCATCATTTGGGATGCGCATA...GAGAAGTGCAGAGCTTTGCTGTCCCAAAGCCTCGGGTCTTTCCCTCGCAGATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR GCA 90 bp CCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAAAGGAGGTTCCAGATTCTTaGCGTGGAGTCTCCAGACCC +
Preference number: 4 (lower is better)
Translates to: PATPLLISPSLLPKHSSKEVPDS*RGVSRP
Trigger: GGGTCTGGAGACTCCACGGCAAGAATCTGGAACCTC...CTTTGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCATCCAGATTCTTGCCGTaGAGTCTCCAGACCCTGATG +
Preference number: 4 (lower is better)
Translates to: APATPLLISPSLLPKHSSSRFLP*SLQTLM
Trigger: CATCAGGGTCTGGAGACTCCACGGCAAGAATCTGGA...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp GGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCTACAAAGTGAAGGTAAACGCAGAATaGGAAAATCCTGACTCTTGC +
Preference number: 4 (lower is better)
Translates to: GGRGRRISEFEDSLVYKVKVNAE*ENPDSC
Trigger: GCAAGAGTCAGGATTTTCTCATTCTGCGTTTACCTT...CACTTTGTAGACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp AGAACCCTGAAAACACCTGGCACAAACCATAGACGACTGCCTCTCTGGATGCAATCGTGCTGTTCTCACTaGGGTTCCAGATTCTTGCCG +
Preference number: 4 (lower is better)
Translates to: RTLKTPGTNHRRLPLWMQSCCSH*GSRFLP
Trigger: CGGCAAGAATCTGGAACCTCAGTGAGAACAGCACGA...TTGCATCCAGAGAGGCAGTCGTCTATGGTTTGTGCCAGGTGTTTTCAGGGTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp GAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGCGGGGCTGGGTTAGAGCAGTTTCCAATCTAGAGACGTaGCATCCTTGTTACTGGGCA +
Preference number: 4 (lower is better)
Translates to: EQGSKNRAAKLRGWVRAVSNLET*HPCYWA
Trigger: TGCCCAGTAACAAGGATGTCACGTCTCTAGATTGGA...AACTGCTCTAACCCAGCCCCGCAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp ATGGTAAAATGTAAGTGTATCCATCCTCTTTACCAAAAGCAAATGCCACCCTACAGCAGCGGCAGCGGCTaGGGCTGCATGCTGCTGTGC +
Preference number: 4 (lower is better)
Translates to: MVKCKCIHPLYQKQMPPYSSGSG*GCMLLC
Trigger: GCACAGCAGCATGCAGCCGCAGCCGCTGCCGCTGCT...GTAGGGTGGCATTTGCTTTTGGTAAAGAGGATGGATACACTTACATTTTACCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp GTAGATGTCTTCAGCCACATCTGCGAGGGAAAGACCCGAGGCTTTGGGACAGCAAAGGTGTTGTTGCTCTaGCAGTCAACATCCAATGCT +
Preference number: 4 (lower is better)
Translates to: VDVFSHICEGKTRGFGTAKVLLL*QSTSNA
Trigger: AGCATTGGATGTTGACTGGCAGAGCAACAACACCTT...TGCTGTCCCAAAGCCTCGGGTCTTTCCCTCGCAGATGTGGCTGAAGACATCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR CCA 90 bp GCCACATCTGCGAGGGAAAGACCCGAGGCTTTGGGACAGCAAAGCTCTGCACTTTCATTCGTGTGTCCCTaGAATGTTTTGATAGGTCTG +
Preference number: 4 (lower is better)
Translates to: ATSARERPEALGQQSSALSFVCP*NVLIGL
Trigger: CAGACCTATCAAAACATTCCAGGGACACACGAATGA...AAGTGCAGAGCTTTGCTGTCCCAAAGCCTCGGGTCTTTCCCTCGCAGATGTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR CCA 90 bp GGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCTACAAAGTGTGTCCCTGGTCCTGTTaGACTCCACTTAATAGTATA +
Preference number: 4 (lower is better)
Translates to: GGRGRRISEFEDSLVYKVCPWSC*TPLNSI
Trigger: TATACTATTAAGTGGAGTCCAACAGGACCAGGGACA...CACTTTGTAGACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR CAA 72 bp ATCAGTTACGGGTGGAAACCACTGCAGCATGTTTGGTaGGCATGGGTGAAAGCCCTCAGCCACATACTTGGT +
Preference number: 4 (lower is better)
Translates to: ISYGWKPLQHVW*AWVKALSHILG
Trigger: ACCAAGTATGTGGCTGAGGGCTTTCACCCATGCCAACCAAACATGCTGCAGTGGTTTCCACCCGTAACTGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
3UTR CAA 72 bp CGAAATCAGTTACGGGTGGAAACCACTGCAGCATGTTaGGTTGGCATGGGTGAAAGCCCTCAGCCACATACT +
Preference number: 4 (lower is better)
Translates to: RNQLRVETTAAC*VGMGESPQPHT
Trigger: AGTATGTGGCTGAGGGCTTTCACCCATGCCAACCAAACATGCTGCAGTGGTTTCCACCCGTAACTGATTTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
CDS-3UTR GCA 90 bp GACTGGCGTCAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGATGATAGAGATGAGTaGAGCGGGTGGAACCAGGGC +
Preference number: 4 (lower is better)
Translates to: DWRQSTLLCKEQGSKNRADDRDE*SGWNQG
Trigger: GCCCTGGTTCCACCCGCTGCACTCATCTCTATCATC...TGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTGACGCCAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp TGGCGTCAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGCAGATGATAGAGATGAGTaGAGCGGGTGGAACCAGGGC +
Preference number: 4 (lower is better)
Translates to: WRQSTLLCKEQGSKNRAADDRDE*SGWNQG
Trigger: GCCCTGGTTCCACCCGCTGCACTCATCTCTATCATC...TGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTGACGCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp CAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGTTACTGGGCACGTCCTaGCCTCCTTCCCGTATGCAG +
Preference number: 4 (lower is better)
Translates to: QSTLLCKEQGSKNRAAKLLLGTS*PPSRMQ
Trigger: CTGCATACGGGAAGGAGGGCAGGACGTGCCCAGTAA...CAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp GGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCTACAAAGTGTTGTCAAAGTATGGATaGAAATCCCTCTGTCTACGT +
Preference number: 4 (lower is better)
Translates to: GGRGRRISEFEDSLVYKVLSKYG*KSLCLR
Trigger: ACGTAGACAGAGGGATTTGCATCCATACTTTGACAA...CACTTTGTAGACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp GCCACATCTGCGAGGGAAAGACCCGAGGCTTTGGGACAGCAAAGCTCTGCACTTTTGTCAAAGTATGGATaGAAATCCCTCTGTCTACGT +
Preference number: 4 (lower is better)
Translates to: ATSARERPEALGQQSSALLSKYG*KSLCLR
Trigger: ACGTAGACAGAGGGATTTGCATCCATACTTTGACAA...AAGTGCAGAGCTTTGCTGTCCCAAAGCCTCGGGTCTTTCCCTCGCAGATGTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR GCA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAGTCAAAAGAACCACTTaGCAGATACCTGCCATCAGG +
Preference number: 4 (lower is better)
Translates to: APATPLLISPSLLPKHSSVKRTT*QIPAIR
Trigger: CCTGATGGCAGGTATCTGGCAAGTGGTTCTTTTGAC...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp CTAAGTCCCCAAGGGTCTCCTGCCTGGAGTACACAGGTTCCTTCATGCCTTTCATGGATTATTTGTCCCTaGTCCTGTTGGACTCCACTT +
Preference number: 4 (lower is better)
Translates to: LSPQGSPAWSTQVPSCLSWIICP*SCWTPL
Trigger: AAGTGGAGTCCAACAGGACCAGGGACAAATAATCCA...TGAAAGGCATGAAGGAACCTGTGTACTCCAGGCAGGAGACCCTTGGGGACTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR TCA 90 bp ATGGAAAATAGGGATAAATCTAAGTCCCCAAGGGTCTCCTGCCTGGAGTACACATCGTGCTGTTCTCACTaGGGTTCCAGATTCTTGCCG +
Preference number: 4 (lower is better)
Translates to: MENRDKSKSPRVSCLEYTSCCSH*GSRFLP
Trigger: CGGCAAGAATCTGGAACCTCAGTGAGAACAGCACGA...TGTGTACTCCAGGCAGGAGACCCTTGGGGACTTAGATTTATCCCTATTTTCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR TCA 90 bp TGGCGTCAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGCATCGTGCTGTTCTCACTaGGGTTCCAGATTCTTGCCG +
Preference number: 4 (lower is better)
Translates to: WRQSTLLCKEQGSKNRAASCCSH*GSRFLP
Trigger: CGGCAAGAATCTGGAACCTCAGTGAGAACAGCACGA...TGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTGACGCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTAGATGATAGAGATGAGTaGAGCGGGTGGAACCAGGGC +
Preference number: 4 (lower is better)
Translates to: ETKQQLRSTMLKCSFGAVDDRDE*SGWNQG
Trigger: GCCCTGGTTCCACCCGCTGCACTCATCTCTATCATC...TACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp CAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGGAGGTTCCAGATTCTTaGCGTGGAGTCTCCAGACCC +
Preference number: 4 (lower is better)
Translates to: QSTLLCKEQGSKNRAAKLEVPDS*RGVSRP
Trigger: GGGTCTGGAGACTCCACGGCAAGAATCTGGAACCTC...CAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp CCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAAAGTATGCTGCCCCAAGGTaGTGGCAAGATTACCATCTT +
Preference number: 4 (lower is better)
Translates to: PATPLLISPSLLPKHSSKYAAPR*WQDYHL
Trigger: AAGATGGTAATCTTGCCAGCACCTTGGGGCAGCATA...CTTTGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAAAGGTGTTGTTGCTCTaGCAGTCAACATCCAATGCT +
Preference number: 4 (lower is better)
Translates to: APATPLLISPSLLPKHSSKVLLL*QSTSNA
Trigger: AGCATTGGATGTTGACTGGCAGAGCAACAACACCTT...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp TTAGCAGTTGCAGTGAGGGCAGGACAAGGCTACAGCTGCCTGCATCTACGAAGGATCTGTACTACAAGATaGAAAGGTGTTGTTGCTCTG +
Preference number: 4 (lower is better)
Translates to: LAVAVRAGQGYSCLHLRRICTTR*KGVVAL
Trigger: CAGAGCAACAACACCTTTGCATCTTGTAGTACAGAT...CCTTCGTAGATGCAGGCAGCTGTAGCCTTGTCCTGCCCTCACTGCAACTGCTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
CDS-3UTR GCA 90 bp CCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAAAGGTCAAAAGAACCACTTaGCAGATACCTGCCATCAGG +
Preference number: 4 (lower is better)
Translates to: PATPLLISPSLLPKHSSKVKRTT*QIPAIR
Trigger: CCTGATGGCAGGTATCTGGCAAGTGGTTCTTTTGAC...CTTTGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp TGTAAAGAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGCGGGGCTGGGTTAGAGTCAAAAGAACCACTTaGCAGATACCTGCCATCAGG +
Preference number: 4 (lower is better)
Translates to: CKEQGSKNRAAKLRGWVRVKRTT*QIPAIR
Trigger: CCTGATGGCAGGTATCTGGCAAGTGGTTCTTTTGAC...TCTAACCCAGCCCCGCAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp AACACAGGGTGGGATTCAGGAGCCAAAGGCCTCAAAATAACTACTGACACACATTCCAGATTCTTGCCGTaGAGTCTCCAGACCCTGATG +
Preference number: 4 (lower is better)
Translates to: NTGWDSGAKGLKITTDTHSRFLP*SLQTLM
Trigger: CATCAGGGTCTGGAGACTCCACGGCAAGAATCTGGA...ATGTGTGTCAGTAGTTATTTTGAGGCCTTTGGCTCCTGAATCCCACCCTGTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCATGGATTATTTGTCCCTaGTCCTGTTGGACTCCACTT +
Preference number: 4 (lower is better)
Translates to: APATPLLISPSLLPKHSSWIICP*SCWTPL
Trigger: AAGTGGAGTCCAACAGGACCAGGGACAAATAATCCA...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
3UTR CAA 72 bp CTACAAGAGTTGGGGGAAACTGAGGCTGGATGTGCCTaGGGATGTTCTTCATCTGTTACTGGGTGTGTAGTA +
Preference number: 4 (lower is better)
Translates to: LQELGETEAGCA*GCSSSVTGCVV
Trigger: TACTACACACCCAGTAACAGATGAAGAACATCCCAAGGCACATCCAGCCTCAGTTTCCCCCAACTCTTGTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
CDS-3UTR TCA 90 bp CAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGTCGTGCTGTTCTCACTaGGGTTCCAGATTCTTGCCG +
Preference number: 4 (lower is better)
Translates to: QSTLLCKEQGSKNRAAKLSCCSH*GSRFLP
Trigger: CGGCAAGAATCTGGAACCTCAGTGAGAACAGCACGA...CAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCACGCCAGCACTTAGGATaGAATTTCCTTTCTTATTCC +
Preference number: 4 (lower is better)
Translates to: APATPLLISPSLLPKHSSRQHLG*NFLSYS
Trigger: GGAATAAGAAAGGAAATTTCATCCTAAGTGCTGGCG...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAATTTATGCTAACTTCTaGCTCTACATACTGCAGGCC +
Preference number: 4 (lower is better)
Translates to: APATPLLISPSLLPKHSSIYANF*LYILQA
Trigger: GGCCTGCAGTATGTAGAGGCAGAAGTTAGCATAAAT...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp AGAACCCTGAAAACACCTGGCACAAACCATAGACGACTGCCTCTCTGGATGCAAAAGGTGTTGTTGCTCTaGCAGTCAACATCCAATGCT +
Preference number: 4 (lower is better)
Translates to: RTLKTPGTNHRRLPLWMQKVLLL*QSTSNA
Trigger: AGCATTGGATGTTGACTGGCAGAGCAACAACACCTT...TTGCATCCAGAGAGGCAGTCGTCTATGGTTTGTGCCAGGTGTTTTCAGGGTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp CCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAAAGATGCAAAGGTGTTGTTaGTCTGCCAGTCAACATCCA +
Preference number: 4 (lower is better)
Translates to: PATPLLISPSLLPKHSSKMQRCC*SASQHP
Trigger: TGGATGTTGACTGGCAGAGCAACAACACCTTTGCAT...CTTTGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp GAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGCGGGGCTGGGTTAGAGCAGTTATCTGTACTACAAGATaGAAAGGTGTTGTTGCTCTG +
Preference number: 4 (lower is better)
Translates to: EQGSKNRAAKLRGWVRAVICTTR*KGVVAL
Trigger: CAGAGCAACAACACCTTTGCATCTTGTAGTACAGAT...AACTGCTCTAACCCAGCCCCGCAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp GTAGATGTCTTCAGCCACATCTGCGAGGGAAAGACCCGAGGCTTTGGGACAGCATGTCTTGTCCTAATTTaGAGACGTGAATGCACATAT +
Preference number: 4 (lower is better)
Translates to: VDVFSHICEGKTRGFGTACLVLI*RRECTY
Trigger: ATATGTGCATTCACGTCTGCAAATTAGGACAAGACA...TGCTGTCCCAAAGCCTCGGGTCTTTCCCTCGCAGATGTGGCTGAAGACATCTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR CCA 90 bp CCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAAAGTACTGCAGGCCTTTCTaGATGATAGAGATGAGTGCA +
Preference number: 4 (lower is better)
Translates to: PATPLLISPSLLPKHSSKYCRPF*MIEMSA
Trigger: TGCACTCATCTCTATCATCCAGAAAGGCCTGCAGTA...CTTTGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp TGGCGTCAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGCAGGGACAGAGACTCGATaGGTCGACCATCAAATAAGG +
Preference number: 4 (lower is better)
Translates to: WRQSTLLCKEQGSKNRAAGTETR*VDHQIR
Trigger: CCTTATTTGATGGTCGACCCATCGAGTCTCTGTCCC...TGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTGACGCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp ATGCCACCCTACCTTAATGAAGCCAAGACTGGCGTCAATCAACGCTGCTTTGTAAAAACTTCAGATTCATaGCCCCGAAGCACAACCGCT +
Preference number: 4 (lower is better)
Translates to: MPPYLNEAKTGVNQRCFVKTSDS*PRSTTA
Trigger: AGCGGTTGTGCTTCGGGGCCATGAATCTGAAGTTTT...TACAAAGCAGCGTTGATTGACGCCAGTCTTGGCTTCATTAAGGTAGGGTGGCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCATCATTCGTGTGTCCCTaGAATGTTTTGATAGGTCTG +
Preference number: 4 (lower is better)
Translates to: APATPLLISPSLLPKHSSSFVCP*NVLIGL
Trigger: CAGACCTATCAAAACATTCCAGGGACACACGAATGA...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCATGTCCCTGGTCCTGTTaGACTCCACTTAATAGTATA +
Preference number: 4 (lower is better)
Translates to: APATPLLISPSLLPKHSSCPWSC*TPLNSI
Trigger: TATACTATTAAGTGGAGTCCAACAGGACCAGGGACA...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp GAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGCGGGGCTGGGTTAGAGCAGTTCCATTTATGTTGGACTaGCTTATATGGCTCTCTATA +
Preference number: 4 (lower is better)
Translates to: EQGSKNRAAKLRGWVRAVPFMLD*LIWLSI
Trigger: TATAGAGAGCCATATAAGTCAGTCCAACATAAATGG...AACTGCTCTAACCCAGCCCCGCAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp TGGCGTCAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGCATCCAATCTAGAGACGTaGCATCCTTGTTACTGGGCA +
Preference number: 4 (lower is better)
Translates to: WRQSTLLCKEQGSKNRAASNLET*HPCYWA
Trigger: TGCCCAGTAACAAGGATGTCACGTCTCTAGATTGGA...TGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTGACGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp AACACAGGGTGGGATTCAGGAGCCAAAGGCCTCAAAATAACTACTGACACACATTATGCGCATCCCAAATaGTGGTGGTCTTATCTACGC +
Preference number: 4 (lower is better)
Translates to: NTGWDSGAKGLKITTDTHYAHPK*WWSYLR
Trigger: GCGTAGATAAGACCACCATCATTTGGGATGCGCATA...ATGTGTGTCAGTAGTTATTTTGAGGCCTTTGGCTCCTGAATCCCACCCTGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCACCTAATTTGCAGACGTaGATGCACATATCTGTACTA +
Preference number: 4 (lower is better)
Translates to: APATPLLISPSLLPKHSSPNLQT*MHISVL
Trigger: TAGTACAGATATGTGCATTCACGTCTGCAAATTAGG...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp AGAACCCTGAAAACACCTGGCACAAACCATAGACGACTGCCTCTCTGGATGCAAATTTATGCTAACTTCTaGCTCTACATACTGCAGGCC +
Preference number: 4 (lower is better)
Translates to: RTLKTPGTNHRRLPLWMQIYANF*LYILQA
Trigger: GGCCTGCAGTATGTAGAGGCAGAAGTTAGCATAAAT...TTGCATCCAGAGAGGCAGTCGTCTATGGTTTGTGCCAGGTGTTTTCAGGGTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAGTCAGTGTGATTATTTaGGATGGTATGTGCTCCATT +
Preference number: 4 (lower is better)
Translates to: APATPLLISPSLLPKHSSVSVII*DGMCSI
Trigger: AATGGAGCACATACCATCGCAAATAATCACACTGAC...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp CCTTCACAAACACAGCCTCTGGTGAACCTTTGTAGGTATATTTTACTTTTAGCTTTACTGGGCACGTCCTaGCCTCCTTCCCGTATGCAG +
Preference number: 4 (lower is better)
Translates to: PSQTQPLVNLCRYILLLALLGTS*PPSRMQ
Trigger: CTGCATACGGGAAGGAGGGCAGGACGTGCCCAGTAA...AGCTAAAAGTAAAATATACCTACAAAGGTTCACCAGAGGCTGTGTTTGTGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp ATGGTAAAATGTAAGTGTATCCATCCTCTTTACCAAAAGCAAATGCCACCCTACTTACTGGGCACGTCCTaGCCTCCTTCCCGTATGCAG +
Preference number: 4 (lower is better)
Translates to: MVKCKCIHPLYQKQMPPYLLGTS*PPSRMQ
Trigger: CTGCATACGGGAAGGAGGGCAGGACGTGCCCAGTAA...GTAGGGTGGCATTTGCTTTTGGTAAAGAGGATGGATACACTTACATTTTACCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp ATGGAAAATAGGGATAAATCTAAGTCCCCAAGGGTCTCCTGCCTGGAGTACACATATGCTGCCCCAAGGTaGTGGCAAGATTACCATCTT +
Preference number: 4 (lower is better)
Translates to: MENRDKSKSPRVSCLEYTYAAPR*WQDYHL
Trigger: AAGATGGTAATCTTGCCAGCACCTTGGGGCAGCATA...TGTGTACTCCAGGCAGGAGACCCTTGGGGACTTAGATTTATCCCTATTTTCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR GCA 90 bp GACTGGCGTCAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCATATGCTGCCCCAAGGTaGTGGCAAGATTACCATCTT +
Preference number: 4 (lower is better)
Translates to: DWRQSTLLCKEQGSKNRAYAAPR*WQDYHL
Trigger: AAGATGGTAATCTTGCCAGCACCTTGGGGCAGCATA...TGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTGACGCCAGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAATCTGTACTACAAGATaGAAAGGTGTTGTTGCTCTG +
Preference number: 4 (lower is better)
Translates to: APATPLLISPSLLPKHSSICTTR*KGVVAL
Trigger: CAGAGCAACAACACCTTTGCATCTTGTAGTACAGAT...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp CTAAGTCCCCAAGGGTCTCCTGCCTGGAGTACACAGGTTCCTTCATGCCTTTCAATTTGCAGACGTGAATaGACATATCTGTACTACAAG +
Preference number: 4 (lower is better)
Translates to: LSPQGSPAWSTQVPSCLSICRRE*TYLYYK
Trigger: CTTGTAGTACAGATATGTGCATTCACGTCTGCAAAT...TGAAAGGCATGAAGGAACCTGTGTACTCCAGGCAGGAGACCCTTGGGGACTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR GCA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCATTGTCAAAGTATGGATaGAAATCCCTCTGTCTACGT +
Preference number: 4 (lower is better)
Translates to: APATPLLISPSLLPKHSSLSKYG*KSLCLR
Trigger: ACGTAGACAGAGGGATTTGCATCCATACTTTGACAA...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp CCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAAAGTCATTCGTGTGTCCCTaGAATGTTTTGATAGGTCTG +
Preference number: 4 (lower is better)
Translates to: PATPLLISPSLLPKHSSKSFVCP*NVLIGL
Trigger: CAGACCTATCAAAACATTCCAGGGACACACGAATGA...CTTTGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp CTGCAGCAACTGTGCAAGTACCGCTCTAAGCTCCTGAGAATCCAGCTTCTGTGGTGTTTTGTCAAAGTATaGATGCAAATCCCTCTGTCT +
Preference number: 4 (lower is better)
Translates to: LQQLCKYRSKLLRIQLLWCFVKV*MQIPLS
Trigger: AGACAGAGGGATTTGCATCCATACTTTGACAAAACA...CCACAGAAGCTGGATTCTCAGGAGCTTAGAGCGGTACTTGCACAGTTGCTGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
3UTR CAA 72 bp GAAAACCAAGAAAGGCAGTGGGCACGGAGAAGGAACTaGACTAAGGAAACCAACTACAAGAGTTGGGGGAAA +
Preference number: 4 (lower is better)
Translates to: ENQERQWARRRN*TKETNYKSWGK
Trigger: TTTCCCCCAACTCTTGTAGTTGGTTTCCTTAGTCAAGTTCCTTCTCCGTGCCCACTGCCTTTCTTGGTTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
CDS-3UTR TCA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCACCATTTATGTTGGACTaGCTTATATGGCTCTCTATA +
Preference number: 4 (lower is better)
Translates to: APATPLLISPSLLPKHSSPFMLD*LIWLSI
Trigger: TATAGAGAGCCATATAAGTCAGTCCAACATAAATGG...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp CCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAAAGTCCATCATGTCAGTGTaGTTATTTGCGATGGTATGT +
Preference number: 4 (lower is better)
Translates to: PATPLLISPSLLPKHSSKSIMSV*LFAMVC
Trigger: ACATACCATCGCAAATAATCACACTGACATGATGGA...CTTTGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp AGAACCCTGAAAACACCTGGCACAAACCATAGACGACTGCCTCTCTGGATGCAATCCATCATGTCAGTGTaGTTATTTGCGATGGTATGT +
Preference number: 4 (lower is better)
Translates to: RTLKTPGTNHRRLPLWMQSIMSV*LFAMVC
Trigger: ACATACCATCGCAAATAATCACACTGACATGATGGA...TTGCATCCAGAGAGGCAGTCGTCTATGGTTTGTGCCAGGTGTTTTCAGGGTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTATCCAATCTAGAGACGTaGCATCCTTGTTACTGGGCA +
Preference number: 4 (lower is better)
Translates to: ETKQQLRSTMLKCSFGAVSNLET*HPCYWA
Trigger: TGCCCAGTAACAAGGATGTCACGTCTCTAGATTGGA...TACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTATATGCGCATCCCAAATaGTGGTGGTCTTATCTACGC +
Preference number: 4 (lower is better)
Translates to: ETKQQLRSTMLKCSFGAVYAHPK*WWSYLR
Trigger: GCGTAGATAAGACCACCATCATTTGGGATGCGCATA...TACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp AGAACCCTGAAAACACCTGGCACAAACCATAGACGACTGCCTCTCTGGATGCAACCTAATTTGCAGACGTaGATGCACATATCTGTACTA +
Preference number: 4 (lower is better)
Translates to: RTLKTPGTNHRRLPLWMQPNLQT*MHISVL
Trigger: TAGTACAGATATGTGCATTCACGTCTGCAAATTAGG...TTGCATCCAGAGAGGCAGTCGTCTATGGTTTGTGCCAGGTGTTTTCAGGGTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp GTAGTGATTATAGTGGAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCTTACTGGGCACGTCCTaGCCTCCTTCCCGTATGCAG +
Preference number: 4 (lower is better)
Translates to: VVIIVETKQQLRSTMLKCLLGTS*PPSRMQ
Trigger: CTGCATACGGGAAGGAGGGCAGGACGTGCCCAGTAA...GCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTCCACTATAATCACTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTATATGCTGCCCCAAGGTaGTGGCAAGATTACCATCTT +
Preference number: 4 (lower is better)
Translates to: ETKQQLRSTMLKCSFGAVYAAPR*WQDYHL
Trigger: AAGATGGTAATCTTGCCAGCACCTTGGGGCAGCATA...TACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp GACTGGCGTCAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAATGCAAAGGTGTTGTTaGTCTGCCAGTCAACATCCA +
Preference number: 4 (lower is better)
Translates to: DWRQSTLLCKEQGSKNRAMQRCC*SASQHP
Trigger: TGGATGTTGACTGGCAGAGCAACAACACCTTTGCAT...TGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTGACGCCAGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp TGGCGTCAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGCAATGCAAAGGTGTTGTTaGTCTGCCAGTCAACATCCA +
Preference number: 4 (lower is better)
Translates to: WRQSTLLCKEQGSKNRAAMQRCC*SASQHP
Trigger: TGGATGTTGACTGGCAGAGCAACAACACCTTTGCAT...TGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTGACGCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCATGTCTTGTCCTAATTTaGAGACGTGAATGCACATAT +
Preference number: 4 (lower is better)
Translates to: APATPLLISPSLLPKHSSCLVLI*RRECTY
Trigger: ATATGTGCATTCACGTCTGCAAATTAGGACAAGACA...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp CCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAAAGTTGTCAAAGTATGGATaGAAATCCCTCTGTCTACGT +
Preference number: 4 (lower is better)
Translates to: PATPLLISPSLLPKHSSKLSKYG*KSLCLR
Trigger: ACGTAGACAGAGGGATTTGCATCCATACTTTGACAA...CTTTGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp GACTGGCGTCAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCATACTGCAGGCCTTTCTaGATGATAGAGATGAGTGCA +
Preference number: 4 (lower is better)
Translates to: DWRQSTLLCKEQGSKNRAYCRPF*MIEMSA
Trigger: TGCACTCATCTCTATCATCCAGAAAGGCCTGCAGTA...TGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTGACGCCAGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp GACTGGCGTCAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCATGGATTATTTGTCCCTaGTCCTGTTGGACTCCACTT +
Preference number: 4 (lower is better)
Translates to: DWRQSTLLCKEQGSKNRAWIICP*SCWTPL
Trigger: AAGTGGAGTCCAACAGGACCAGGGACAAATAATCCA...TGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTGACGCCAGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCATGTTTTGTCAAAGTATaGATGCAAATCCCTCTGTCT +
Preference number: 4 (lower is better)
Translates to: APATPLLISPSLLPKHSSCFVKV*MQIPLS
Trigger: AGACAGAGGGATTTGCATCCATACTTTGACAAAACA...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp CCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAAAGTATATACCAAGAAGTTaGCCTCATCACTGCTTATAC +
Preference number: 4 (lower is better)
Translates to: PATPLLISPSLLPKHSSKYIPRS*PHHCLY
Trigger: GTATAAGCAGTGATGAGGTCAACTTCTTGGTATATA...CTTTGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp AACACAGGGTGGGATTCAGGAGCCAAAGGCCTCAAAATAACTACTGACACACATCGCCAGCACTTAGGATaGAATTTCCTTTCTTATTCC +
Preference number: 4 (lower is better)
Translates to: NTGWDSGAKGLKITTDTHRQHLG*NFLSYS
Trigger: GGAATAAGAAAGGAAATTTCATCCTAAGTGCTGGCG...ATGTGTGTCAGTAGTTATTTTGAGGCCTTTGGCTCCTGAATCCCACCCTGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTACTGTACACGGGCTCTTaGTGTTTTGTCAAAGTATGG +
Preference number: 4 (lower is better)
Translates to: ETKQQLRSTMLKCSFGAVLYTGS*CFVKVW
Trigger: CCATACTTTGACAAAACATCAAGAGCCCGTGTACAG...TACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp TGGCGTCAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGCAATTTATGCTAACTTCTaGCTCTACATACTGCAGGCC +
Preference number: 4 (lower is better)
Translates to: WRQSTLLCKEQGSKNRAAIYANF*LYILQA
Trigger: GGCCTGCAGTATGTAGAGGCAGAAGTTAGCATAAAT...TGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTGACGCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp GACTGGCGTCAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAATTTATGCTAACTTCTaGCTCTACATACTGCAGGCC +
Preference number: 4 (lower is better)
Translates to: DWRQSTLLCKEQGSKNRAIYANF*LYILQA
Trigger: GGCCTGCAGTATGTAGAGGCAGAAGTTAGCATAAAT...TGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTGACGCCAGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp ACTCAGGAGTCATCATTATCCCTAGCTGATTACATGCTATCAGTATTTAACAAATTACTGGGCACGTCCTaGCCTCCTTCCCGTATGCAG +
Preference number: 4 (lower is better)
Translates to: TQESSLSLADYMLSVFNKLLGTS*PPSRMQ
Trigger: CTGCATACGGGAAGGAGGGCAGGACGTGCCCAGTAA...TTTGTTAAATACTGATAGCATGTAATCAGCTAGGGATAATGATGACTCCTGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193734.6
CDS-3UTR GCA 90 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTAATGCAAAGGTGTTGTTaGTCTGCCAGTCAACATCCA +
Preference number: 4 (lower is better)
Translates to: ETKQQLRSTMLKCSFGAVMQRCC*SASQHP
Trigger: TGGATGTTGACTGGCAGAGCAACAACACCTTTGCAT...TACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp CCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAAAGATTTGCAGACGTGAATaGACATATCTGTACTACAAG +
Preference number: 4 (lower is better)
Translates to: PATPLLISPSLLPKHSSKICRRE*TYLYYK
Trigger: CTTGTAGTACAGATATGTGCATTCACGTCTGCAAAT...CTTTGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp TGTAAAGAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGCGGGGCTGGGTTAGATGTCTTGTCCTAATTTaGAGACGTGAATGCACATAT +
Preference number: 4 (lower is better)
Translates to: CKEQGSKNRAAKLRGWVRCLVLI*RRECTY
Trigger: ATATGTGCATTCACGTCTGCAAATTAGGACAAGACA...TCTAACCCAGCCCCGCAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTATACTGCAGGCCTTTCTaGATGATAGAGATGAGTGCA +
Preference number: 4 (lower is better)
Translates to: ETKQQLRSTMLKCSFGAVYCRPF*MIEMSA
Trigger: TGCACTCATCTCTATCATCCAGAAAGGCCTGCAGTA...TACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp GTAGTGATTATAGTGGAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCTTTGCAGATCCTTGCTaGTTAGTGGCGGCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: VVIIVETKQQLRSTMLKCFADPC*LVAAAA
Trigger: CGCTGCTGCCGCCACTAACCAGCAAGGATCTGCAAA...GCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTCCACTATAATCACTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp AAGGGTGGCAGCTGCTCCCTCCAGTCTACTTTAATCAATGATATTCATTTAAGCAAAACTTCAGATTCATaGCCCCGAAGCACAACCGCT +
Preference number: 4 (lower is better)
Translates to: KGGSCSLQSTLINDIHLSKTSDS*PRSTTA
Trigger: AGCGGTTGTGCTTCGGGGCCATGAATCTGAAGTTTT...GCTTAAATGAATATCATTGATTAAAGTAGACTGGAGGGAGCAGCTGCCACCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR CCA 90 bp AACACAGGGTGGGATTCAGGAGCCAAAGGCCTCAAAATAACTACTGACACACATTGTCCCTGGTCCTGTTaGACTCCACTTAATAGTATA +
Preference number: 4 (lower is better)
Translates to: NTGWDSGAKGLKITTDTHCPWSC*TPLNSI
Trigger: TATACTATTAAGTGGAGTCCAACAGGACCAGGGACA...ATGTGTGTCAGTAGTTATTTTGAGGCCTTTGGCTCCTGAATCCCACCCTGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp ATGCCACCCTACCTTAATGAAGCCAAGACTGGCGTCAATCAACGCTGCTTTGTATATATACCAAGAAGTTaGCCTCATCACTGCTTATAC +
Preference number: 4 (lower is better)
Translates to: MPPYLNEAKTGVNQRCFVYIPRS*PHHCLY
Trigger: GTATAAGCAGTGATGAGGTCAACTTCTTGGTATATA...TACAAAGCAGCGTTGATTGACGCCAGTCTTGGCTTCATTAAGGTAGGGTGGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp CAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGAAGGTAAACGCAGAATaGGAAAATCCTGACTCTTGC +
Preference number: 4 (lower is better)
Translates to: QSTLLCKEQGSKNRAAKLKVNAE*ENPDSC
Trigger: GCAAGAGTCAGGATTTTCTCATTCTGCGTTTACCTT...CAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp GTAGTGATTATAGTGGAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCTCGTGCTGTTCTCACTaGGGTTCCAGATTCTTGCCG +
Preference number: 4 (lower is better)
Translates to: VVIIVETKQQLRSTMLKCSCCSH*GSRFLP
Trigger: CGGCAAGAATCTGGAACCTCAGTGAGAACAGCACGA...GCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTCCACTATAATCACTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp AGGAAATGCAGCTTAGGCATACTCAAAAAGTTTGTGTCTATTCTTGGGAGCACGCTGTACACGGGCTCTTaGTGTTTTGTCAAAGTATGG +
Preference number: 4 (lower is better)
Translates to: RKCSLGILKKFVSILGSTLYTGS*CFVKVW
Trigger: CCATACTTTGACAAAACATCAAGAGCCCGTGTACAG...CGTGCTCCCAAGAATAGACACAAACTTTTTGAGTATGCCTAAGCTGCATTTCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
CDS-3UTR TCA 90 bp ACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTATATCTGTACACGGGCTCTTaGTGTTTTGTCAAAGTATGG +
Preference number: 4 (lower is better)
Translates to: TKQQLRSTMLKCSFGAVYLYTGS*CFVKVW
Trigger: CCATACTTTGACAAAACATCAAGAGCCCGTGTACAG...ATATACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTAATTTATGCTAACTTCTaGCTCTACATACTGCAGGCC +
Preference number: 4 (lower is better)
Translates to: ETKQQLRSTMLKCSFGAVIYANF*LYILQA
Trigger: GGCCTGCAGTATGTAGAGGCAGAAGTTAGCATAAAT...TACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp ACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTATATAAGGTGTTGTTGCTCTaGCAGTCAACATCCAATGCT +
Preference number: 4 (lower is better)
Translates to: TKQQLRSTMLKCSFGAVYKVLLL*QSTSNA
Trigger: AGCATTGGATGTTGACTGGCAGAGCAACAACACCTT...ATATACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp ATGCCACCCTACCTTAATGAAGCCAAGACTGGCGTCAATCAACGCTGCTTTGTAATTTGCAGACGTGAATaGACATATCTGTACTACAAG +
Preference number: 4 (lower is better)
Translates to: MPPYLNEAKTGVNQRCFVICRRE*TYLYYK
Trigger: CTTGTAGTACAGATATGTGCATTCACGTCTGCAAAT...TACAAAGCAGCGTTGATTGACGCCAGTCTTGGCTTCATTAAGGTAGGGTGGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTATCATTCGTGTGTCCCTaGAATGTTTTGATAGGTCTG +
Preference number: 4 (lower is better)
Translates to: ETKQQLRSTMLKCSFGAVSFVCP*NVLIGL
Trigger: CAGACCTATCAAAACATTCCAGGGACACACGAATGA...TACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp AACACAGGGTGGGATTCAGGAGCCAAAGGCCTCAAAATAACTACTGACACACATTATATACCAAGAAGTTaGCCTCATCACTGCTTATAC +
Preference number: 4 (lower is better)
Translates to: NTGWDSGAKGLKITTDTHYIPRS*PHHCLY
Trigger: GTATAAGCAGTGATGAGGTCAACTTCTTGGTATATA...ATGTGTGTCAGTAGTTATTTTGAGGCCTTTGGCTCCTGAATCCCACCCTGTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp CTAAATGAACACCATAGAAAGACTACTGGACTCTGGATTTTCAGAGCCAATTCTTCCAATCTAGAGACGTaGCATCCTTGTTACTGGGCA +
Preference number: 4 (lower is better)
Translates to: LNEHHRKTTGLWIFRANSSNLET*HPCYWA
Trigger: TGCCCAGTAACAAGGATGTCACGTCTCTAGATTGGA...AGAATTGGCTCTGAAAATCCAGAGTCCAGTAGTCTTTCTATGGTGTTCATTTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR TCA 90 bp GAAAGCAAGACATTATCAGAAAATTCAGCTGTCATTTTGGCAGCTGTGTTTCAGTCCAATCTAGAGACGTaGCATCCTTGTTACTGGGCA +
Preference number: 4 (lower is better)
Translates to: ESKTLSENSAVILAAVFQSNLET*HPCYWA
Trigger: TGCCCAGTAACAAGGATGTCACGTCTCTAGATTGGA...CTGAAACACAGCTGCCAAAATGACAGCTGAATTTTCTGATAATGTCTTGCTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
CDS-3UTR TCA 90 bp AGGAAATGCAGCTTAGGCATACTCAAAAAGTTTGTGTCTATTCTTGGGAGCACGCGCCAGCACTTAGGATaGAATTTCCTTTCTTATTCC +
Preference number: 4 (lower is better)
Translates to: RKCSLGILKKFVSILGSTRQHLG*NFLSYS
Trigger: GGAATAAGAAAGGAAATTTCATCCTAAGTGCTGGCG...CGTGCTCCCAAGAATAGACACAAACTTTTTGAGTATGCCTAAGCTGCATTTCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
CDS-3UTR TCA 90 bp ATGGTAAAATGTAAGTGTATCCATCCTCTTTACCAAAAGCAAATGCCACCCTACTATGCGCATCCCAAATaGTGGTGGTCTTATCTACGC +
Preference number: 4 (lower is better)
Translates to: MVKCKCIHPLYQKQMPPYYAHPK*WWSYLR
Trigger: GCGTAGATAAGACCACCATCATTTGGGATGCGCATA...GTAGGGTGGCATTTGCTTTTGGTAAAGAGGATGGATACACTTACATTTTACCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTACCTAATTTGCAGACGTaGATGCACATATCTGTACTA +
Preference number: 4 (lower is better)
Translates to: ETKQQLRSTMLKCSFGAVPNLQT*MHISVL
Trigger: TAGTACAGATATGTGCATTCACGTCTGCAAATTAGG...TACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp CAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGGTCAGTGTGATTATTTaGGATGGTATGTGCTCCATT +
Preference number: 4 (lower is better)
Translates to: QSTLLCKEQGSKNRAAKLVSVII*DGMCSI
Trigger: AATGGAGCACATACCATCGCAAATAATCACACTGAC...CAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp ATGGAAAATAGGGATAAATCTAAGTCCCCAAGGGTCTCCTGCCTGGAGTACACAATTTGCAGACGTGAATaGACATATCTGTACTACAAG +
Preference number: 4 (lower is better)
Translates to: MENRDKSKSPRVSCLEYTICRRE*TYLYYK
Trigger: CTTGTAGTACAGATATGTGCATTCACGTCTGCAAAT...TGTGTACTCCAGGCAGGAGACCCTTGGGGACTTAGATTTATCCCTATTTTCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR GCA 90 bp ATGGTAAAATGTAAGTGTATCCATCCTCTTTACCAAAAGCAAATGCCACCCTACGTCAAAAGAACCACTTaGCAGATACCTGCCATCAGG +
Preference number: 4 (lower is better)
Translates to: MVKCKCIHPLYQKQMPPYVKRTT*QIPAIR
Trigger: CCTGATGGCAGGTATCTGGCAAGTGGTTCTTTTGAC...GTAGGGTGGCATTTGCTTTTGGTAAAGAGGATGGATACACTTACATTTTACCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp CCTTCACAAACACAGCCTCTGGTGAACCTTTGTAGGTATATTTTACTTTTAGCTAAAACTTCAGATTCATaGCCCCGAAGCACAACCGCT +
Preference number: 4 (lower is better)
Translates to: PSQTQPLVNLCRYILLLAKTSDS*PRSTTA
Trigger: AGCGGTTGTGCTTCGGGGCCATGAATCTGAAGTTTT...AGCTAAAAGTAAAATATACCTACAAAGGTTCACCAGAGGCTGTGTTTGTGAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTATATATACCAAGAAGTTaGCCTCATCACTGCTTATAC +
Preference number: 4 (lower is better)
Translates to: ETKQQLRSTMLKCSFGAVYIPRS*PHHCLY
Trigger: GTATAAGCAGTGATGAGGTCAACTTCTTGGTATATA...TACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTACCATTTATGTTGGACTaGCTTATATGGCTCTCTATA +
Preference number: 4 (lower is better)
Translates to: ETKQQLRSTMLKCSFGAVPFMLD*LIWLSI
Trigger: TATAGAGAGCCATATAAGTCAGTCCAACATAAATGG...TACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp ACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTATATGTCAGTGTGATTATTTaGGATGGTATGTGCTCCATT +
Preference number: 4 (lower is better)
Translates to: TKQQLRSTMLKCSFGAVYVSVII*DGMCSI
Trigger: AATGGAGCACATACCATCGCAAATAATCACACTGAC...ATATACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp AGGAAATGCAGCTTAGGCATACTCAAAAAGTTTGTGTCTATTCTTGGGAGCACGGTCAGTGTGATTATTTaGGATGGTATGTGCTCCATT +
Preference number: 4 (lower is better)
Translates to: RKCSLGILKKFVSILGSTVSVII*DGMCSI
Trigger: AATGGAGCACATACCATCGCAAATAATCACACTGAC...CGTGCTCCCAAGAATAGACACAAACTTTTTGAGTATGCCTAAGCTGCATTTCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
CDS-3UTR GCA 90 bp CTAAATGAACACCATAGAAAGACTACTGGACTCTGGATTTTCAGAGCCAATTCTATGCAAAGGTGTTGTTaGTCTGCCAGTCAACATCCA +
Preference number: 4 (lower is better)
Translates to: LNEHHRKTTGLWIFRANSMQRCC*SASQHP
Trigger: TGGATGTTGACTGGCAGAGCAACAACACCTTTGCAT...AGAATTGGCTCTGAAAATCCAGAGTCCAGTAGTCTTTCTATGGTGTTCATTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR GCA 90 bp CAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGATTTGCAGACGTGAATaGACATATCTGTACTACAAG +
Preference number: 4 (lower is better)
Translates to: QSTLLCKEQGSKNRAAKLICRRE*TYLYYK
Trigger: CTTGTAGTACAGATATGTGCATTCACGTCTGCAAAT...CAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR GCA 90 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTATGTCTTGTCCTAATTTaGAGACGTGAATGCACATAT +
Preference number: 4 (lower is better)
Translates to: ETKQQLRSTMLKCSFGAVCLVLI*RRECTY
Trigger: ATATGTGCATTCACGTCTGCAAATTAGGACAAGACA...TACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp CTAAATGAACACCATAGAAAGACTACTGGACTCTGGATTTTCAGAGCCAATTCTTACTGCAGGCCTTTCTaGATGATAGAGATGAGTGCA +
Preference number: 4 (lower is better)
Translates to: LNEHHRKTTGLWIFRANSYCRPF*MIEMSA
Trigger: TGCACTCATCTCTATCATCCAGAAAGGCCTGCAGTA...AGAATTGGCTCTGAAAATCCAGAGTCCAGTAGTCTTTCTATGGTGTTCATTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR CCA 90 bp GTAGTGATTATAGTGGAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAAAACTTCAGATTCATaGCCCCGAAGCACAACCGCT +
Preference number: 4 (lower is better)
Translates to: VVIIVETKQQLRSTMLKCKTSDS*PRSTTA
Trigger: AGCGGTTGTGCTTCGGGGCCATGAATCTGAAGTTTT...GCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTCCACTATAATCACTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp CTAAATGAACACCATAGAAAGACTACTGGACTCTGGATTTTCAGAGCCAATTCTAAGGTAAACGCAGAATaGGAAAATCCTGACTCTTGC +
Preference number: 4 (lower is better)
Translates to: LNEHHRKTTGLWIFRANSKVNAE*ENPDSC
Trigger: GCAAGAGTCAGGATTTTCTCATTCTGCGTTTACCTT...AGAATTGGCTCTGAAAATCCAGAGTCCAGTAGTCTTTCTATGGTGTTCATTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR TCA 90 bp CCTTCACAAACACAGCCTCTGGTGAACCTTTGTAGGTATATTTTACTTTTAGCTAAGGTAAACGCAGAATaGGAAAATCCTGACTCTTGC +
Preference number: 4 (lower is better)
Translates to: PSQTQPLVNLCRYILLLAKVNAE*ENPDSC
Trigger: GCAAGAGTCAGGATTTTCTCATTCTGCGTTTACCTT...AGCTAAAAGTAAAATATACCTACAAAGGTTCACCAGAGGCTGTGTTTGTGAAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp ACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTATATCCATTTATGTTGGACTaGCTTATATGGCTCTCTATA +
Preference number: 4 (lower is better)
Translates to: TKQQLRSTMLKCSFGAVYPFMLD*LIWLSI
Trigger: TATAGAGAGCCATATAAGTCAGTCCAACATAAATGG...ATATACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp ATGGTAAAATGTAAGTGTATCCATCCTCTTTACCAAAAGCAAATGCCACCCTACCGCCAGCACTTAGGATaGAATTTCCTTTCTTATTCC +
Preference number: 4 (lower is better)
Translates to: MVKCKCIHPLYQKQMPPYRQHLG*NFLSYS
Trigger: GGAATAAGAAAGGAAATTTCATCCTAAGTGCTGGCG...GTAGGGTGGCATTTGCTTTTGGTAAAGAGGATGGATACACTTACATTTTACCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp GTAGTGATTATAGTGGAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCCTGTACACGGGCTCTTaGTGTTTTGTCAAAGTATGG +
Preference number: 4 (lower is better)
Translates to: VVIIVETKQQLRSTMLKCLYTGS*CFVKVW
Trigger: CCATACTTTGACAAAACATCAAGAGCCCGTGTACAG...GCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTCCACTATAATCACTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp ATGGTAAAATGTAAGTGTATCCATCCTCTTTACCAAAAGCAAATGCCACCCTACTCATTCGTGTGTCCCTaGAATGTTTTGATAGGTCTG +
Preference number: 4 (lower is better)
Translates to: MVKCKCIHPLYQKQMPPYSFVCP*NVLIGL
Trigger: CAGACCTATCAAAACATTCCAGGGACACACGAATGA...GTAGGGTGGCATTTGCTTTTGGTAAAGAGGATGGATACACTTACATTTTACCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp ACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTATATTGTTTTGTCAAAGTATaGATGCAAATCCCTCTGTCT +
Preference number: 4 (lower is better)
Translates to: TKQQLRSTMLKCSFGAVYCFVKV*MQIPLS
Trigger: AGACAGAGGGATTTGCATCCATACTTTGACAAAACA...ATATACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp GTAGTGATTATAGTGGAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAAGGTAAACGCAGAATaGGAAAATCCTGACTCTTGC +
Preference number: 4 (lower is better)
Translates to: VVIIVETKQQLRSTMLKCKVNAE*ENPDSC
Trigger: GCAAGAGTCAGGATTTTCTCATTCTGCGTTTACCTT...GCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTCCACTATAATCACTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp CTAAATGAACACCATAGAAAGACTACTGGACTCTGGATTTTCAGAGCCAATTCTTCCATCATGTCAGTGTaGTTATTTGCGATGGTATGT +
Preference number: 4 (lower is better)
Translates to: LNEHHRKTTGLWIFRANSSIMSV*LFAMVC
Trigger: ACATACCATCGCAAATAATCACACTGACATGATGGA...AGAATTGGCTCTGAAAATCCAGAGTCCAGTAGTCTTTCTATGGTGTTCATTTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR TCA 90 bp GAATCAGCTGGGAAGAACGTCAATGACTGTATGCAAATGAATAAAATGTCCATACGCCAGCACTTAGGATaGAATTTCCTTTCTTATTCC +
Preference number: 4 (lower is better)
Translates to: ESAGKNVNDCMQMNKMSIRQHLG*NFLSYS
Trigger: GGAATAAGAAAGGAAATTTCATCCTAAGTGCTGGCG...TATGGACATTTTATTCATTTGCATACAGTCATTGACGTTCTTCCCAGCTGATTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
CDS-3UTR GCA 90 bp CCTTCACAAACACAGCCTCTGGTGAACCTTTGTAGGTATATTTTACTTTTAGCTTTGTCAAAGTATGGATaGAAATCCCTCTGTCTACGT +
Preference number: 4 (lower is better)
Translates to: PSQTQPLVNLCRYILLLALSKYG*KSLCLR
Trigger: ACGTAGACAGAGGGATTTGCATCCATACTTTGACAA...AGCTAAAAGTAAAATATACCTACAAAGGTTCACCAGAGGCTGTGTTTGTGAAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CCA 90 bp GAATCAGCTGGGAAGAACGTCAATGACTGTATGCAAATGAATAAAATGTCCATATGTCCCTGGTCCTGTTaGACTCCACTTAATAGTATA +
Preference number: 4 (lower is better)
Translates to: ESAGKNVNDCMQMNKMSICPWSC*TPLNSI
Trigger: TATACTATTAAGTGGAGTCCAACAGGACCAGGGACA...TATGGACATTTTATTCATTTGCATACAGTCATTGACGTTCTTCCCAGCTGATTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
CDS-3UTR TCA 90 bp ATGGTAAAATGTAAGTGTATCCATCCTCTTTACCAAAAGCAAATGCCACCCTACCCATTTATGTTGGACTaGCTTATATGGCTCTCTATA +
Preference number: 4 (lower is better)
Translates to: MVKCKCIHPLYQKQMPPYPFMLD*LIWLSI
Trigger: TATAGAGAGCCATATAAGTCAGTCCAACATAAATGG...GTAGGGTGGCATTTGCTTTTGGTAAAGAGGATGGATACACTTACATTTTACCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp GTAGTGATTATAGTGGAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCCCTAATTTGCAGACGTaGATGCACATATCTGTACTA +
Preference number: 4 (lower is better)
Translates to: VVIIVETKQQLRSTMLKCPNLQT*MHISVL
Trigger: TAGTACAGATATGTGCATTCACGTCTGCAAATTAGG...GCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTCCACTATAATCACTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR TCA 90 bp GAATCAGCTGGGAAGAACGTCAATGACTGTATGCAAATGAATAAAATGTCCATACCTAATTTGCAGACGTaGATGCACATATCTGTACTA +
Preference number: 4 (lower is better)
Translates to: ESAGKNVNDCMQMNKMSIPNLQT*MHISVL
Trigger: TAGTACAGATATGTGCATTCACGTCTGCAAATTAGG...TATGGACATTTTATTCATTTGCATACAGTCATTGACGTTCTTCCCAGCTGATTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
CDS-3UTR GCA 90 bp GTAGTGATTATAGTGGAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCATCTGTACTACAAGATaGAAAGGTGTTGTTGCTCTG +
Preference number: 4 (lower is better)
Translates to: VVIIVETKQQLRSTMLKCICTTR*KGVVAL
Trigger: CAGAGCAACAACACCTTTGCATCTTGTAGTACAGAT...GCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTCCACTATAATCACTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS GCA 90 bp GGCACGTCCTGCCCTCCTTCCCGTATGCAGTGTCTAAGCACGAGCTaGGTAGGGCCACTCGTGCTGTTCTCACTGAGGTTCCAGATTCTT +
Preference number: 5 (lower is better)
Translates to: GTSCPPSRMQCLSTS*VGPLVLFSLRFQIL
Trigger: AAGAATCTGGAACCTCAGTGAGAACAGCACGAGTGGCCCTACGCAGCTCGTGCTTAGACACTGCATACGGGAAGGAGGGCAGGACGTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp CAGCCCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCTGGCATTTGGATTATTaGTCCCTGGTCCTGTTGGAC +
Preference number: 5 (lower is better)
Translates to: QPSGGRGRRISEFEDSLVWHLDY*SLVLLD
Trigger: GTCCAACAGGACCAGGGACAAATAATCCAAATGCCA...GACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGGGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp TCCCAGCCCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGCATCATATGACCCAGTaGCTAGAAGTGTACCTTCAC +
Preference number: 5 (lower is better)
Translates to: SQPSGGRGRRISEFEDSLHHMTQ*LEVYLH
Trigger: GTGAAGGTACACTTCTAGCAACTGGGTCATATGATG...CAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGGGCTGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp TCCCAGCCCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGCGGGCTCTTGATGTTTaGTCAAAGTATGGATGCAAA +
Preference number: 5 (lower is better)
Translates to: SQPSGGRGRRISEFEDSLRALDV*SKYGCK
Trigger: TTTGCATCCATACTTTGACAAAACATCAAGAGCCCG...CAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGGGCTGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS GCA 90 bp CTATTCCAATCTAGAGACGTGACATCCTTGTTACTGGGCACGTCCTaGCCTCCTTCCCGTATGCAGTGTCTAAGCACGAGCTGCGTAGGG +
Preference number: 5 (lower is better)
Translates to: LFQSRDVTSLLLGTS*PPSRMQCLSTSCVG
Trigger: CCCTACGCAGCTCGTGCTTAGACACTGCATACGGGAAGGAGGGCAGGACGTGCCCAGTAACAAGGATGTCACGTCTCTAGATTGGAATAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp TCCCAGCCCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGCTTGCTAGCATAAGGTaGGCATTTGGATTATTTGTC +
Preference number: 5 (lower is better)
Translates to: SQPSGGRGRRISEFEDSLLASIR*AFGLFV
Trigger: GACAAATAATCCAAATGCCAACCTTATGCTAGCAAG...CAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGGGCTGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp ACATCTGCGAGGGAAAGACCCGAGGCTTTGGGACAGCAAAGCTCTGCACTTCTCCAAGATGCAAAGGTGTaGTTGCTCTGCCAGTCAACA +
Preference number: 5 (lower is better)
Translates to: TSARERPEALGQQSSALLQDAKV*LLCQST
Trigger: TGTTGACTGGCAGAGCAACAACACCTTTGCATCTTG...GAGAAGTGCAGAGCTTTGCTGTCCCAAAGCCTCGGGTCTTTCCCTCGCAGATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR CAA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCATGGCATTTGGATTATTaGTCCCTGGTCCTGTTGGAC +
Preference number: 5 (lower is better)
Translates to: APATPLLISPSLLPKHSSWHLDY*SLVLLD
Trigger: GTCCAACAGGACCAGGGACAAATAATCCAAATGCCA...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp GGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCTACAAAGTGCTTGCTAGCATAAGGTaGGCATTTGGATTATTTGTC +
Preference number: 5 (lower is better)
Translates to: GGRGRRISEFEDSLVYKVLASIR*AFGLFV
Trigger: GACAAATAATCCAAATGCCAACCTTATGCTAGCAAG...CACTTTGTAGACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCACATCATATGACCCAGTaGCTAGAAGTGTACCTTCAC +
Preference number: 5 (lower is better)
Translates to: APATPLLISPSLLPKHSSHHMTQ*LEVYLH
Trigger: GTGAAGGTACACTTCTAGCAACTGGGTCATATGATG...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp AGAACCCTGAAAACACCTGGCACAAACCATAGACGACTGCCTCTCTGGATGCAATGGCATTTGGATTATTaGTCCCTGGTCCTGTTGGAC +
Preference number: 5 (lower is better)
Translates to: RTLKTPGTNHRRLPLWMQWHLDY*SLVLLD
Trigger: GTCCAACAGGACCAGGGACAAATAATCCAAATGCCA...TTGCATCCAGAGAGGCAGTCGTCTATGGTTTGTGCCAGGTGTTTTCAGGGTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp CTGCAGCAACTGTGCAAGTACCGCTCTAAGCTCCTGAGAATCCAGCTTCTGTGGACTGTACACGGGCTCTaGATGTTTTGTCAAAGTATG +
Preference number: 5 (lower is better)
Translates to: LQQLCKYRSKLLRIQLLWTVHGL*MFCQSM
Trigger: CATACTTTGACAAAACATCAAGAGCCCGTGTACAGT...CCACAGAAGCTGGATTCTCAGGAGCTTAGAGCGGTACTTGCACAGTTGCTGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR CAA 90 bp AGAACCCTGAAAACACCTGGCACAAACCATAGACGACTGCCTCTCTGGATGCAACAGATGTGCACACACTaGTCAAAAGAACCACTTGCC +
Preference number: 5 (lower is better)
Translates to: RTLKTPGTNHRRLPLWMQQMCTH*SKEPLA
Trigger: GGCAAGTGGTTCTTTTGACAAGTGTGTGCACATCTG...TTGCATCCAGAGAGGCAGTCGTCTATGGTTTGTGCCAGGTGTTTTCAGGGTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCATGTCAGTGTGATTATTaGCGATGGTATGTGCTCCAT +
Preference number: 5 (lower is better)
Translates to: APATPLLISPSLLPKHSSCQCDY*RWYVLH
Trigger: ATGGAGCACATACCATCGCAAATAATCACACTGACA...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp CCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAAAGCATCATATGACCCAGTaGCTAGAAGTGTACCTTCAC +
Preference number: 5 (lower is better)
Translates to: PATPLLISPSLLPKHSSKHHMTQ*LEVYLH
Trigger: GTGAAGGTACACTTCTAGCAACTGGGTCATATGATG...CTTTGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp GAACAAGGCAGCAAAAACAGAGCAGCAAAGCTGCGGGGCTGGGTTAGAGCAGTTCTTGCTAGCATAAGGTaGGCATTTGGATTATTTGTC +
Preference number: 5 (lower is better)
Translates to: EQGSKNRAAKLRGWVRAVLASIR*AFGLFV
Trigger: GACAAATAATCCAAATGCCAACCTTATGCTAGCAAG...AACTGCTCTAACCCAGCCCCGCAGCTTTGCTGCTCTGTTTTTGCTGCCTTGTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCACGGGCTCTTGATGTTTaGTCAAAGTATGGATGCAAA +
Preference number: 5 (lower is better)
Translates to: APATPLLISPSLLPKHSSRALDV*SKYGCK
Trigger: TTTGCATCCATACTTTGACAAAACATCAAGAGCCCG...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp GCTCCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAACTGTACACGGGCTCTaGATGTTTTGTCAAAGTATG +
Preference number: 5 (lower is better)
Translates to: APATPLLISPSLLPKHSSTVHGL*MFCQSM
Trigger: CATACTTTGACAAAACATCAAGAGCCCGTGTACAGT...TGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp AGAACCCTGAAAACACCTGGCACAAACCATAGACGACTGCCTCTCTGGATGCAATGTCAGTGTGATTATTaGCGATGGTATGTGCTCCAT +
Preference number: 5 (lower is better)
Translates to: RTLKTPGTNHRRLPLWMQCQCDY*RWYVLH
Trigger: ATGGAGCACATACCATCGCAAATAATCACACTGACA...TTGCATCCAGAGAGGCAGTCGTCTATGGTTTGTGCCAGGTGTTTTCAGGGTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp TGGCGTCAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGCAAGCACAACCGCTTTATaGGAAGGGATTTCCACATCC +
Preference number: 5 (lower is better)
Translates to: WRQSTLLCKEQGSKNRAASTTAL*EGISTS
Trigger: GGATGTGGAAATCCCTTCCAATAAAGCGGTTGTGCT...TGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTGACGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp AACACAGGGTGGGATTCAGGAGCCAAAGGCCTCAAAATAACTACTGACACACATAGCACAACCGCTTTATaGGAAGGGATTTCCACATCC +
Preference number: 5 (lower is better)
Translates to: NTGWDSGAKGLKITTDTHSTTAL*EGISTS
Trigger: GGATGTGGAAATCCCTTCCAATAAAGCGGTTGTGCT...ATGTGTGTCAGTAGTTATTTTGAGGCCTTTGGCTCCTGAATCCCACCCTGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp CCAGCCACACCTCTCCTAATTTCCCCATCACTGCTACCCAAACATAGCTCAAAGACTGTACACGGGCTCTaGATGTTTTGTCAAAGTATG +
Preference number: 5 (lower is better)
Translates to: PATPLLISPSLLPKHSSKTVHGL*MFCQSM
Trigger: CATACTTTGACAAAACATCAAGAGCCCGTGTACAGT...CTTTGAGCTATGTTTGGGTAGCAGTGATGGGGAAATTAGGAGAGGTGTGGCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp TGGCGTCAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGCACAGATGTGCACACACTaGTCAAAAGAACCACTTGCC +
Preference number: 5 (lower is better)
Translates to: WRQSTLLCKEQGSKNRAAQMCTH*SKEPLA
Trigger: GGCAAGTGGTTCTTTTGACAAGTGTGTGCACATCTG...TGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTGACGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTAAGCACAACCGCTTTATaGGAAGGGATTTCCACATCC +
Preference number: 5 (lower is better)
Translates to: ETKQQLRSTMLKCSFGAVSTTAL*EGISTS
Trigger: GGATGTGGAAATCCCTTCCAATAAAGCGGTTGTGCT...TACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp TGGCGTCAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGCACATCATATGACCCAGTaGCTAGAAGTGTACCTTCAC +
Preference number: 5 (lower is better)
Translates to: WRQSTLLCKEQGSKNRAAHHMTQ*LEVYLH
Trigger: GTGAAGGTACACTTCTAGCAACTGGGTCATATGATG...TGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTGACGCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTACAAGATGCAAAGGTGTaGTTGCTCTGCCAGTCAACA +
Preference number: 5 (lower is better)
Translates to: ETKQQLRSTMLKCSFGAVQDAKV*LLCQST
Trigger: TGTTGACTGGCAGAGCAACAACACCTTTGCATCTTG...TACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp GAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTACAGATGTGCACACACTaGTCAAAAGAACCACTTGCC +
Preference number: 5 (lower is better)
Translates to: ETKQQLRSTMLKCSFGAVQMCTH*SKEPLA
Trigger: GGCAAGTGGTTCTTTTGACAAGTGTGTGCACATCTG...TACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp AAGGGTGGCAGCTGCTCCCTCCAGTCTACTTTAATCAATGATATTCATTTAAGCAGCACAACCGCTTTATaGGAAGGGATTTCCACATCC +
Preference number: 5 (lower is better)
Translates to: KGGSCSLQSTLINDIHLSSTTAL*EGISTS
Trigger: GGATGTGGAAATCCCTTCCAATAAAGCGGTTGTGCT...GCTTAAATGAATATCATTGATTAAAGTAGACTGGAGGGAGCAGCTGCCACCCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR CAA 90 bp ACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTATATCAAGATGCAAAGGTGTaGTTGCTCTGCCAGTCAACA +
Preference number: 5 (lower is better)
Translates to: TKQQLRSTMLKCSFGAVYQDAKV*LLCQST
Trigger: TGTTGACTGGCAGAGCAACAACACCTTTGCATCTTG...ATATACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp ACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTATATTGGCATTTGGATTATTaGTCCCTGGTCCTGTTGGAC +
Preference number: 5 (lower is better)
Translates to: TKQQLRSTMLKCSFGAVYWHLDY*SLVLLD
Trigger: GTCCAACAGGACCAGGGACAAATAATCCAAATGCCA...ATATACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp AACACAGGGTGGGATTCAGGAGCCAAAGGCCTCAAAATAACTACTGACACACATCGGGCTCTTGATGTTTaGTCAAAGTATGGATGCAAA +
Preference number: 5 (lower is better)
Translates to: NTGWDSGAKGLKITTDTHRALDV*SKYGCK
Trigger: TTTGCATCCATACTTTGACAAAACATCAAGAGCCCG...ATGTGTGTCAGTAGTTATTTTGAGGCCTTTGGCTCCTGAATCCCACCCTGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp TGGCGTCAATCAACGCTGCTTTGTAAAGAACAAGGCAGCAAAAACAGAGCAGCACTTGCTAGCATAAGGTaGGCATTTGGATTATTTGTC +
Preference number: 5 (lower is better)
Translates to: WRQSTLLCKEQGSKNRAALASIR*AFGLFV
Trigger: GACAAATAATCCAAATGCCAACCTTATGCTAGCAAG...TGCTGCTCTGTTTTTGCTGCCTTGTTCTTTACAAAGCAGCGTTGATTGACGCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp ACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCAGCTTTGGCGCCGTATATTGTCAGTGTGATTATTaGCGATGGTATGTGCTCCAT +
Preference number: 5 (lower is better)
Translates to: TKQQLRSTMLKCSFGAVYCQCDY*RWYVLH
Trigger: ATGGAGCACATACCATCGCAAATAATCACACTGACA...ATATACGGCGCCAAAGCTGCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp GAAAGCAAGACATTATCAGAAAATTCAGCTGTCATTTTGGCAGCTGTGTTTCAGCAAGATGCAAAGGTGTaGTTGCTCTGCCAGTCAACA +
Preference number: 5 (lower is better)
Translates to: ESKTLSENSAVILAAVFQQDAKV*LLCQST
Trigger: TGTTGACTGGCAGAGCAACAACACCTTTGCATCTTG...CTGAAACACAGCTGCCAAAATGACAGCTGAATTTTCTGATAATGTCTTGCTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
CDS-3UTR CAA 90 bp CCTTCACAAACACAGCCTCTGGTGAACCTTTGTAGGTATATTTTACTTTTAGCTCAAGATGCAAAGGTGTaGTTGCTCTGCCAGTCAACA +
Preference number: 5 (lower is better)
Translates to: PSQTQPLVNLCRYILLLAQDAKV*LLCQST
Trigger: TGTTGACTGGCAGAGCAACAACACCTTTGCATCTTG...AGCTAAAAGTAAAATATACCTACAAAGGTTCACCAGAGGCTGTGTTTGTGAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp GAAAGCAAGACATTATCAGAAAATTCAGCTGTCATTTTGGCAGCTGTGTTTCAGTGGCATTTGGATTATTaGTCCCTGGTCCTGTTGGAC +
Preference number: 5 (lower is better)
Translates to: ESKTLSENSAVILAAVFQWHLDY*SLVLLD
Trigger: GTCCAACAGGACCAGGGACAAATAATCCAAATGCCA...CTGAAACACAGCTGCCAAAATGACAGCTGAATTTTCTGATAATGTCTTGCTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
CDS-3UTR CAA 90 bp CCTTCACAAACACAGCCTCTGGTGAACCTTTGTAGGTATATTTTACTTTTAGCTCAGATGTGCACACACTaGTCAAAAGAACCACTTGCC +
Preference number: 5 (lower is better)
Translates to: PSQTQPLVNLCRYILLLAQMCTH*SKEPLA
Trigger: GGCAAGTGGTTCTTTTGACAAGTGTGTGCACATCTG...AGCTAAAAGTAAAATATACCTACAAAGGTTCACCAGAGGCTGTGTTTGTGAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp ATGGTAAAATGTAAGTGTATCCATCCTCTTTACCAAAAGCAAATGCCACCCTACCAGATGTGCACACACTaGTCAAAAGAACCACTTGCC +
Preference number: 5 (lower is better)
Translates to: MVKCKCIHPLYQKQMPPYQMCTH*SKEPLA
Trigger: GGCAAGTGGTTCTTTTGACAAGTGTGTGCACATCTG...GTAGGGTGGCATTTGCTTTTGGTAAAGAGGATGGATACACTTACATTTTACCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp GAAAGCAAGACATTATCAGAAAATTCAGCTGTCATTTTGGCAGCTGTGTTTCAGTGTCAGTGTGATTATTaGCGATGGTATGTGCTCCAT +
Preference number: 5 (lower is better)
Translates to: ESKTLSENSAVILAAVFQCQCDY*RWYVLH
Trigger: ATGGAGCACATACCATCGCAAATAATCACACTGACA...CTGAAACACAGCTGCCAAAATGACAGCTGAATTTTCTGATAATGTCTTGCTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
CDS-3UTR CAA 90 bp GTAGTGATTATAGTGGAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCCATCATATGACCCAGTaGCTAGAAGTGTACCTTCAC +
Preference number: 5 (lower is better)
Translates to: VVIIVETKQQLRSTMLKCHHMTQ*LEVYLH
Trigger: GTGAAGGTACACTTCTAGCAACTGGGTCATATGATG...GCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTCCACTATAATCACTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp CTAAATGAACACCATAGAAAGACTACTGGACTCTGGATTTTCAGAGCCAATTCTCGGGCTCTTGATGTTTaGTCAAAGTATGGATGCAAA +
Preference number: 5 (lower is better)
Translates to: LNEHHRKTTGLWIFRANSRALDV*SKYGCK
Trigger: TTTGCATCCATACTTTGACAAAACATCAAGAGCCCG...AGAATTGGCTCTGAAAATCCAGAGTCCAGTAGTCTTTCTATGGTGTTCATTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
CDS-3UTR CAA 90 bp CCTTCACAAACACAGCCTCTGGTGAACCTTTGTAGGTATATTTTACTTTTAGCTACTGTACACGGGCTCTaGATGTTTTGTCAAAGTATG +
Preference number: 5 (lower is better)
Translates to: PSQTQPLVNLCRYILLLATVHGL*MFCQSM
Trigger: CATACTTTGACAAAACATCAAGAGCCCGTGTACAGT...AGCTAAAAGTAAAATATACCTACAAAGGTTCACCAGAGGCTGTGTTTGTGAAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp GTAGTGATTATAGTGGAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCTGTCAGTGTGATTATTaGCGATGGTATGTGCTCCAT +
Preference number: 5 (lower is better)
Translates to: VVIIVETKQQLRSTMLKCCQCDY*RWYVLH
Trigger: ATGGAGCACATACCATCGCAAATAATCACACTGACA...GCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTCCACTATAATCACTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS-3UTR CAA 90 bp GAATCAGCTGGGAAGAACGTCAATGACTGTATGCAAATGAATAAAATGTCCATAACTGTACACGGGCTCTaGATGTTTTGTCAAAGTATG +
Preference number: 5 (lower is better)
Translates to: ESAGKNVNDCMQMNKMSITVHGL*MFCQSM
Trigger: CATACTTTGACAAAACATCAAGAGCCCGTGTACAGT...TATGGACATTTTATTCATTTGCATACAGTCATTGACGTTCTTCCCAGCTGATTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063988.14
ENSMUST00000193734.6
ENSMUST00000201509.2
CDS-3UTR CAA 90 bp GTAGTGATTATAGTGGAAACAAAACAGCAGCTTAGATCTACAATGCTTAAGTGCCTTGCTAGCATAAGGTaGGCATTTGGATTATTTGTC +
Preference number: 5 (lower is better)
Translates to: VVIIVETKQQLRSTMLKCLASIR*AFGLFV
Trigger: GACAAATAATCCAAATGCCAACCTTATGCTAGCAAG...GCACTTAAGCATTGTAGATCTAAGCTGCTGTTTTGTTTCCACTATAATCACTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS GCA 72 bp TGCCCTCCTTCCCGTATGCAGTGTCTAAGCACGAGCTaGGTAGGGCCACTCGTGCTGTTCTCACTGAGGTTC +
Preference number: 6 (lower is better)
Translates to: CPPSRMQCLSTS*VGPLVLFSLRF
Trigger: GAACCTCAGTGAGAACAGCACGAGTGGCCCTACGCAGCTCGTGCTTAGACACTGCATACGGGAAGGAGGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS GCA 72 bp TCTAGAGACGTGACATCCTTGTTACTGGGCACGTCCTaGCCTCCTTCCCGTATGCAGTGTCTAAGCACGAGC +
Preference number: 6 (lower is better)
Translates to: SRDVTSLLLGTS*PPSRMQCLSTS
Trigger: GCTCGTGCTTAGACACTGCATACGGGAAGGAGGGCAGGACGTGCCCAGTAACAAGGATGTCACGTCTCTAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS CAA 72 bp GTACCTTCACTATTCCAATCTAGAGACGTGACATCCTaGTTACTGGGCACGTCCTGCCCTCCTTCCCGTATG +
Preference number: 6 (lower is better)
Translates to: VPSLFQSRDVTS*LLGTSCPPSRM
Trigger: CATACGGGAAGGAGGGCAGGACGTGCCCAGTAACAAGGATGTCACGTCTCTAGATTGGAATAGTGAAGGTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS CAA 90 bp GCTAGAAGTGTACCTTCACTATTCCAATCTAGAGACGTGACATCCTaGTTACTGGGCACGTCCTGCCCTCCTTCCCGTATGCAGTGTCTA +
Preference number: 6 (lower is better)
Translates to: ARSVPSLFQSRDVTS*LLGTSCPPSRMQCL
Trigger: TAGACACTGCATACGGGAAGGAGGGCAGGACGTGCCCAGTAACAAGGATGTCACGTCTCTAGATTGGAATAGTGAAGGTACACTTCTAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS TCA 72 bp CTAGAAGTGTACCTTCACTATTCCAATCTAGAGACGTaGCATCCTTGTTACTGGGCACGTCCTGCCCTCCTT +
Preference number: 6 (lower is better)
Translates to: LEVYLHYSNLET*HPCYWARPALL
Trigger: AAGGAGGGCAGGACGTGCCCAGTAACAAGGATGTCACGTCTCTAGATTGGAATAGTGAAGGTACACTTCTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS CAA 72 bp TGCATGCTGCTGTGCAAGCTTGTCTCTGTAGGCTTGTaGTCTTGTTTGGACTACATCGGGCATAACAGCATC +
Preference number: 6 (lower is better)
Translates to: CMLLCKLVSVGL*SCLDYIGHNSI
Trigger: GATGCTGTTATGCCCGATGTAGTCCAAACAAGACAACAAGCCTACAGAGACAAGCTTGCACAGCAGCATGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000200793.4
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS GCA 72 bp TTTGCAGACGTGAATGCACATATCTGTACTACAAGATaGAAAGGTGTTGTTGCTCTGCCAGTCAACATCCAA +
Preference number: 6 (lower is better)
Translates to: FADVNAHICTTR*KGVVALPVNIQ
Trigger: TTGGATGTTGACTGGCAGAGCAACAACACCTTTGCATCTTGTAGTACAGATATGTGCATTCACGTCTGCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4
CDS CAA 72 bp ACTGTAGAATCAAAGGATGCACTTGCTAGCATAAGGTaGGCATTTGGATTATTTGTCCCTGGTCCTGTTGGA +
Preference number: 6 (lower is better)
Translates to: TVESKDALASIR*AFGLFVPGPVG
Trigger: TCCAACAGGACCAGGGACAAATAATCCAAATGCCAACCTTATGCTAGCAAGTGCATCCTTTGATTCTACAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000063988.14
ENSMUST00000192328.5
ENSMUST00000193734.6
ENSMUST00000201509.2
ENSMUST00000202747.4