RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TBL1X (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025246

Ensembl transcript IDs: ENSMUST00000088217.12

Found 107 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGCAGACTGAGCTGTCTTATGGGGGTGAACTTCAGGGGTGTGGGCTaGATTCTTCTGCTTGGTCCTCGTGTGGCCAGCACTAACTTCCTG +
Preference number: 1 (lower is better)
Translates to: CRLSCLMGVNFRGVG*ILLLGPRVASTNFL
Trigger: CAGGAAGTTAGTGCTGGCCACACGAGGACCAAGCAGAAGAATGCAGCCCACACCCCTGAAGTTCACCCCCATAAGACAGCTCAGTCTGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR TCA 90 bp CACTGTGTGCATGTGGCCATTATCTATGCAGGATTTCATTACAAGTaGGACCACACCAGAGCAAGGACATCAGAGGAAGGGGCGGGCAAC +
Preference number: 1 (lower is better)
Translates to: HCVHVAIIYAGFHYK*DHTRARTSEEGAGN
Trigger: GTTGCCCGCCCCTTCCTCTGATGTCCTTGCTCTGGTGTGGTCTCACTTGTAATGAAATCCTGCATAGATAATGGCCACATGCACACAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR CCA 90 bp ATGCACCTGCTCTATGACAGCAGGCAAATGATAGCGTCCAAATACTaGACGCTTCCAAACAGCTGCAGACTGAGCTGTCTTATGGGGGTG +
Preference number: 1 (lower is better)
Translates to: MHLLYDSRQMIASKY*TLPNSCRLSCLMGV
Trigger: CACCCCCATAAGACAGCTCAGTCTGCAGCTGTTTGGAAGCGTCCAGTATTTGGACGCTATCATTTGCCTGCTGTCATAGAGCAGGTGCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR GCA 90 bp GACAGAGTAAGCAATAGGTGGGAGTGGGGCAAGAGGGAAGGAGAGTaGTGTCCAACAAAGATCCACTGTGTGCATGTGGCCATTATCTAT +
Preference number: 1 (lower is better)
Translates to: DRVSNRWEWGKREGE*CPTKIHCVHVAIIY
Trigger: ATAGATAATGGCCACATGCACACAGTGGATCTTTGTTGGACAGCACTCTCCTTCCCTCTTGCCCCACTCCCACCTATTGCTTACTCTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR GCA 90 bp GGCTTCATATATGTATACTTTTCTCTAAGTAACACTTGCCTCAGCTaGAGGCTGAACCCTGCACACTGTCTCTTGCAACCCCCTTCTGGT +
Preference number: 1 (lower is better)
Translates to: GFIYVYFSLSNTCLS*RLNPAHCLLQPPSG
Trigger: ACCAGAAGGGGGTTGCAAGAGACAGTGTGCAGGGTTCAGCCTGCAGCTGAGGCAAGTGTTACTTAGAGAAAAGTATACATATATGAAGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR CCA 90 bp TTTCTTAGTCAGACAGAACAAAAAGTCAAGTCCTATGGTGTTGAGTaGGGTCAGAGAGTTGAACTTTGTAAGGTCCATCTGGCCCTTCGG +
Preference number: 1 (lower is better)
Translates to: FLSQTEQKVKSYGVE*GQRVELCKVHLALR
Trigger: CCGAAGGGCCAGATGGACCTTACAAAGTTCAACTCTCTGACCCCACTCAACACCATAGGACTTGACTTTTTGTTCTGTCTGACTAAGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR GCA 90 bp TTGATTTTTGGCTTCATATATGTATACTTTTCTCTAAGTAACACTTaGCTCAGCTGCAGGCTGAACCCTGCACACTGTCTCTTGCAACCC +
Preference number: 1 (lower is better)
Translates to: LIFGFIYVYFSLSNT*LSCRLNPAHCLLQP
Trigger: GGGTTGCAAGAGACAGTGTGCAGGGTTCAGCCTGCAGCTGAGGCAAGTGTTACTTAGAGAAAAGTATACATATATGAAGCCAAAAATCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR TCA 90 bp AACAAGTCAGTGTCAAGTTATGACAAGAAACAAACAAAGGCCACCTaGTTTAGTGATGGCAAACTTTACCAGGCACACTATGCCTTATTT +
Preference number: 1 (lower is better)
Translates to: NKSVSSYDKKQTKAT*FSDGKLYQAHYALF
Trigger: AAATAAGGCATAGTGTGCCTGGTAAAGTTTGCCATCACTAAATCAGGTGGCCTTTGTTTGTTTCTTGTCATAACTTGACACTGACTTGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR TCA 90 bp ATACATGTTTTGGTGCTAACATTTGTTTGTTGTGTAGGGAGCACTTaGCCTTCCTTGCTGGTTGATTTTTGGCTTCATATATGTATACTT +
Preference number: 1 (lower is better)
Translates to: IHVLVLTFVCCVGST*PSLLVDFWLHICIL
Trigger: AAGTATACATATATGAAGCCAAAAATCAACCAGCAAGGAAGGTCAAGTGCTCCCTACACAACAAACAAATGTTAGCACCAAAACATGTAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR GCA 90 bp CTGCAGGCTGAACCCTGCACACTGTCTCTTGCAACCCCCTTCTGGTCTGTCCCCTTCTTCCCCACCAGCTaGCAAAGCAATCGCCTTGTT +
Preference number: 2 (lower is better)
Translates to: LQAEPCTLSLATPFWSVPFFPTS*QSNRLV
Trigger: AACAAGGCGATTGCTTTGGCAGCTGGTGGGGAAGAA...GGGGACAGACCAGAAGGGGGTTGCAAGAGACAGTGTGCAGGGTTCAGCCTGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR GCA 90 bp GACGCTTCCAAACAGCTGCAGACTGAGCTGTCTTATGGGGGTGAACTTCAGGGGCTGCAGGCTGAACCCTaGACACTGTCTCTTGCAACC +
Preference number: 2 (lower is better)
Translates to: DASKQLQTELSYGGELQGLQAEP*TLSLAT
Trigger: GGTTGCAAGAGACAGTGTGCAGGGTTCAGCCTGCAG...CCCCTGAAGTTCACCCCCATAAGACAGCTCAGTCTGCAGCTGTTTGGAAGCGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR CCA 90 bp GACGCTTCCAAACAGCTGCAGACTGAGCTGTCTTATGGGGGTGAACTTCAGGGGCTAGGGGGTGTAGCCTaGACACCCAGAGATTGTCTG +
Preference number: 2 (lower is better)
Translates to: DASKQLQTELSYGGELQGLGGVA*TPRDCL
Trigger: CAGACAATCTCTGGGTGTCCAGGCTACACCCCCTAG...CCCCTGAAGTTCACCCCCATAAGACAGCTCAGTCTGCAGCTGTTTGGAAGCGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR TCA 90 bp TTAGTCAGACAGAACAAAAAGTCAAGTCCTATGGTGTTGAGTGGGGTCAGAGAGGCCTCAGCTGCAGGCTaGACCCTGCACACTGTCTCT +
Preference number: 2 (lower is better)
Translates to: LVRQNKKSSPMVLSGVREASAAG*TLHTVS
Trigger: AGAGACAGTGTGCAGGGTTCAGCCTGCAGCTGAGGC...CTCTCTGACCCCACTCAACACCATAGGACTTGACTTTTTGTTCTGTCTGACTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR CCA 90 bp TGTGGCTTAGATTCATCTAGGGGGTGTAGCCTGGACACCCAGAGATTGTCTGATCACACTTGGTCAGGGTaGCTTCTTCACTGTGTTCCC +
Preference number: 2 (lower is better)
Translates to: CGLDSSRGCSLDTQRLSDHTWSG*LLHCVP
Trigger: GGGAACACAGTGAAGAAGCCACCCTGACCAAGTGTG...ATCAGACAATCTCTGGGTGTCCAGGCTACACCCCCTAGATGAATCTAAGCCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR TCA 90 bp TGGACGCTTCCAAACAGCTGCAGACTGAGCTGTCTTATGGGGGTGAACTTCAGGATTGAAATTCTCCCTTaGGACTCACTGTCTTCACAA +
Preference number: 2 (lower is better)
Translates to: WTLPNSCRLSCLMGVNFRIEILP*DSLSSQ
Trigger: TTGTGAAGACAGTGAGTCTCAAGGGAGAATTTCAAT...CCTGAAGTTCACCCCCATAAGACAGCTCAGTCTGCAGCTGTTTGGAAGCGTCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR CCA 90 bp GAAAATGTTGAAAGAGGACCATGTCTGGCTGTACGTCTGACACAGACAATAAAAAGTTTGCATCTGAGGTaGGAGGCCCCCAGACCACAG +
Preference number: 2 (lower is better)
Translates to: ENVERGPCLAVRLTQTIKSLHLR*EAPRPQ
Trigger: CTGTGGTCTGGGGGCCTCCCACCTCAGATGCAAACT...TTTTATTGTCTGTGTCAGACGTACAGCCAGACATGGTCCTCTTTCAACATTTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR CAA 90 bp ACAGGTGATTTCCAAGTAGACTCGAACAAGTCAAGTTCACACAGTTaGGAGCCCATCATAGGAAGGGTGCTGCAATCCCACACATTCACT +
Preference number: 2 (lower is better)
Translates to: TGDFQVDSNKSSSHS*EPIIGRVLQSHTFT
Trigger: AGTGAATGTGTGGGATTGCAGCACCCTTCCTATGATGGGCTCCAAACTGTGTGAACTTGACTTGTTCGAGTCTACTTGGAAATCACCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR CAA 90 bp TGTGGCTTAGATTCATCTAGGGGGTGTAGCCTGGACACCCAGAGATaGTCTGATGAACTCCTTATGTGTCATCTACCCATTACCACCATA +
Preference number: 2 (lower is better)
Translates to: CGLDSSRGCSLDTQR*SDELLMCHLPITTI
Trigger: TATGGTGGTAATGGGTAGATGACACATAAGGAGTTCATCAGACAATCTCTGGGTGTCCAGGCTACACCCCCTAGATGAATCTAAGCCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR CCA 90 bp GAAAATGTTGAAAGAGGACCATGTCTGGCTGTACGTCTGACACAGACAATAAAAAGCAATAGGTGGGAGTaGGGCAAGAGGGAAGGAGAG +
Preference number: 2 (lower is better)
Translates to: ENVERGPCLAVRLTQTIKSNRWE*GKREGE
Trigger: CTCTCCTTCCCTCTTGCCCCACTCCCACCTATTGCT...TTTTATTGTCTGTGTCAGACGTACAGCCAGACATGGTCCTCTTTCAACATTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR TCA 90 bp TTAGTCAGACAGAACAAAAAGTCAAGTCCTATGGTGTTGAGTGGGGTCAGAGAGGGATTTCATTACAAGTaGGACCACACCAGAGCAAGG +
Preference number: 2 (lower is better)
Translates to: LVRQNKKSSPMVLSGVREGFHYK*DHTRAR
Trigger: CCTTGCTCTGGTGTGGTCTCACTTGTAATGAAATCC...CTCTCTGACCCCACTCAACACCATAGGACTTGACTTTTTGTTCTGTCTGACTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR TCA 90 bp GAAAATGTTGAAAGAGGACCATGTCTGGCTGTACGTCTGACACAGACAATAAAAAAGACTGAGGGACACTaGGGCCTTTGGGTCTTAGGT +
Preference number: 2 (lower is better)
Translates to: ENVERGPCLAVRLTQTIKKTEGH*GLWVLG
Trigger: ACCTAAGACCCAAAGGCCTCAGTGTCCCTCAGTCTT...TTTTATTGTCTGTGTCAGACGTACAGCCAGACATGGTCCTCTTTCAACATTTTC
46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR GCA 90 bp GAAAATGTTGAAAGAGGACCATGTCTGGCTGTACGTCTGACACAGACAATAAAATTCAGGGGTGTGGGCTaGATTCTTCTGCTTGGTCCT +
Preference number: 2 (lower is better)
Translates to: ENVERGPCLAVRLTQTIKFRGVG*ILLLGP
Trigger: AGGACCAAGCAGAAGAATGCAGCCCACACCCCTGAA...TTTTATTGTCTGTGTCAGACGTACAGCCAGACATGGTCCTCTTTCAACATTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR CCA 90 bp TGGACGCTTCCAAACAGCTGCAGACTGAGCTGTCTTATGGGGGTGAACTTCAGGGAACAGAAATGTATTTaGGGAACAATGATAGGACTT +
Preference number: 2 (lower is better)
Translates to: WTLPNSCRLSCLMGVNFREQKCI*GTMIGL
Trigger: AAGTCCTATCATTGTTCCCCAAATACATTTCTGTTC...CCTGAAGTTCACCCCCATAAGACAGCTCAGTCTGCAGCTGTTTGGAAGCGTCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR CAA 90 bp GTCTATTTCTTAGTCAGACAGAACAAAAAGTCAAGTCCTATGGTGTaGAGTGGGGTCAGAGAGTTGAACTTTGTAAGGTCCATCTGGCCC +
Preference number: 2 (lower is better)
Translates to: VYFLVRQNKKSSPMV*SGVRELNFVRSIWP
Trigger: GGGCCAGATGGACCTTACAAAGTTCAACTCTCTGACCCCACTCAACACCATAGGACTTGACTTTTTGTTCTGTCTGACTAAGAAATAGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR TCA 90 bp TTAGTCAGACAGAACAAAAAGTCAAGTCCTATGGTGTTGAGTGGGGTCAGAGAGGTAGCTACACTGTTGTaGGAAAGATGTAGCTGGCAA +
Preference number: 2 (lower is better)
Translates to: LVRQNKKSSPMVLSGVREVATLL*ERCSWQ
Trigger: TTGCCAGCTACATCTTTCTCACAACAGTGTAGCTAC...CTCTCTGACCCCACTCAACACCATAGGACTTGACTTTTTGTTCTGTCTGACTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR TCA 90 bp TTAGTCAGACAGAACAAAAAGTCAAGTCCTATGGTGTTGAGTGGGGTCAGAGAGGGCAGAAATGATCAGTaGCATTCTACCTGGGTCTTA +
Preference number: 2 (lower is better)
Translates to: LVRQNKKSSPMVLSGVREGRNDQ*HSTWVL
Trigger: TAAGACCCAGGTAGAATGTCACTGATCATTTCTGCC...CTCTCTGACCCCACTCAACACCATAGGACTTGACTTTTTGTTCTGTCTGACTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR TCA 90 bp GAAAATGTTGAAAGAGGACCATGTCTGGCTGTACGTCTGACACAGACAATAAAAGATGCACCTGCTCTATaGCAGCAGGCAAATGATAGC +
Preference number: 2 (lower is better)
Translates to: ENVERGPCLAVRLTQTIKDAPAL*QQANDS
Trigger: GCTATCATTTGCCTGCTGTCATAGAGCAGGTGCATC...TTTTATTGTCTGTGTCAGACGTACAGCCAGACATGGTCCTCTTTCAACATTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR GCA 90 bp GAAAATGTTGAAAGAGGACCATGTCTGGCTGTACGTCTGACACAGACAATAAAAAAGAGGGAAGGAGAGTaGTGTCCAACAAAGATCCAC +
Preference number: 2 (lower is better)
Translates to: ENVERGPCLAVRLTQTIKKREGE*CPTKIH
Trigger: GTGGATCTTTGTTGGACAGCACTCTCCTTCCCTCTT...TTTTATTGTCTGTGTCAGACGTACAGCCAGACATGGTCCTCTTTCAACATTTTC
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR CCA 90 bp CTCTGGGCAGGAAACTTCATATCCTTTGACACAGAGACATCTGCTATGATTAAAAGAGCCTGTTCTGGATaGAAACCAACCATGCACCAT +
Preference number: 2 (lower is better)
Translates to: LWAGNFISFDTETSAMIKRACSG*KPTMHH
Trigger: ATGGTGCATGGTTGGTTTCCATCCAGAACAGGCTCT...TTTAATCATAGCAGATGTCTCTGTGTCAAAGGATATGAAGTTTCCTGCCCAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR CCA 90 bp GAAAATGTTGAAAGAGGACCATGTCTGGCTGTACGTCTGACACAGACAATAAAAGGCCAGGGAAGTGAATaGTCTTTAGGTTTCTTCTTG +
Preference number: 2 (lower is better)
Translates to: ENVERGPCLAVRLTQTIKGQGSE*SLGFFL
Trigger: CAAGAAGAAACCTAAAGACCATTCACTTCCCTGGCC...TTTTATTGTCTGTGTCAGACGTACAGCCAGACATGGTCCTCTTTCAACATTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR GCA 90 bp TTAGTCAGACAGAACAAAAAGTCAAGTCCTATGGTGTTGAGTGGGGTCAGAGAGTGTGGCCATTATCTATaGAGGATTTCATTACAAGTG +
Preference number: 2 (lower is better)
Translates to: LVRQNKKSSPMVLSGVRECGHYL*RISLQV
Trigger: CACTTGTAATGAAATCCTGCATAGATAATGGCCACA...CTCTCTGACCCCACTCAACACCATAGGACTTGACTTTTTGTTCTGTCTGACTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR GCA 90 bp CTCTGGGCAGGAAACTTCATATCCTTTGACACAGAGACATCTGCTATGATTAAACAAAGATCCACTGTGTaGATGTGGCCATTATCTATG +
Preference number: 2 (lower is better)
Translates to: LWAGNFISFDTETSAMIKQRSTV*MWPLSM
Trigger: CATAGATAATGGCCACATGCACACAGTGGATCTTTG...TTTAATCATAGCAGATGTCTCTGTGTCAAAGGATATGAAGTTTCCTGCCCAGAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR CCA 90 bp TTAGTCAGACAGAACAAAAAGTCAAGTCCTATGGTGTTGAGTGGGGTCAGAGAGACAAACTGGTCTTTTTaGAAAGCAACTGTAGTATCC +
Preference number: 2 (lower is better)
Translates to: LVRQNKKSSPMVLSGVRETNWSF*KATVVS
Trigger: GGATACTACAGTTGCTTTCCAAAAAGACCAGTTTGT...CTCTCTGACCCCACTCAACACCATAGGACTTGACTTTTTGTTCTGTCTGACTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR GCA 90 bp CTCTGGGCAGGAAACTTCATATCCTTTGACACAGAGACATCTGCTATGATTAAAATAAAGCACTTACTATaGTCTGAAAGTGCCTTTGGG +
Preference number: 2 (lower is better)
Translates to: LWAGNFISFDTETSAMIKIKHLL*SESAFG
Trigger: CCCAAAGGCACTTTCAGAGCATAGTAAGTGCTTTAT...TTTAATCATAGCAGATGTCTCTGTGTCAAAGGATATGAAGTTTCCTGCCCAGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR CCA 90 bp CACATTTTCATTGGTACAAACTGGTCTTTTTGGAAAGCAACTGTAGTATCCAAATGTGTTTTAAACTTCTaGATGGAGATTAGGGGAGGG +
Preference number: 2 (lower is better)
Translates to: HIFIGTNWSFWKATVVSKCVLNF*MEIRGG
Trigger: CCCTCCCCTAATCTCCATCCAGAAGTTTAAAACACA...TTTGGATACTACAGTTGCTTTCCAAAAAGACCAGTTTGTACCAATGAAAATGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR GCA 72 bp AGCTGTCTTATGGGGGTGAACTTCAGGGGTGTGGGCTaGATTCTTCTGCTTGGTCCTCGTGTGGCCAGCACT +
Preference number: 3 (lower is better)
Translates to: SCLMGVNFRGVG*ILLLGPRVAST
Trigger: AGTGCTGGCCACACGAGGACCAAGCAGAAGAATGCAGCCCACACCCCTGAAGTTCACCCCCATAAGACAGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR GCA 72 bp AGCAATAGGTGGGAGTGGGGCAAGAGGGAAGGAGAGTaGTGTCCAACAAAGATCCACTGTGTGCATGTGGCC +
Preference number: 3 (lower is better)
Translates to: SNRWEWGKREGE*CPTKIHCVHVA
Trigger: GGCCACATGCACACAGTGGATCTTTGTTGGACAGCACTCTCCTTCCCTCTTGCCCCACTCCCACCTATTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR CAA 90 bp TCATTACAAGTGAGACCACACCAGAGCAAGGACATCAGAGGAAGGGGCGGGCAATCAAGTTCACACAGTTaGGAGCCCATCATAGGAAGG +
Preference number: 3 (lower is better)
Translates to: SLQVRPHQSKDIRGRGGQSSSHS*EPIIGR
Trigger: CCTTCCTATGATGGGCTCCAAACTGTGTGAACTTGA...TTGCCCGCCCCTTCCTCTGATGTCCTTGCTCTGGTGTGGTCTCACTTGTAATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR CAA 90 bp CTGCAGGCTGAACCCTGCACACTGTCTCTTGCAACCCCCTTCTGGTCTGTCCCCTACAAACTGGTCTTTTaGGAAAGCAACTGTAGTATC +
Preference number: 3 (lower is better)
Translates to: LQAEPCTLSLATPFWSVPYKLVF*ESNCSI
Trigger: GATACTACAGTTGCTTTCCAAAAAGACCAGTTTGTA...GGGGACAGACCAGAAGGGGGTTGCAAGAGACAGTGTGCAGGGTTCAGCCTGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR TCA 72 bp CTGTTCTGGATGGAAACCAACCATGCACCATGTAGCTaGTGGCTTCATCCTTCCCCAGCTGAGCATTCTAGG +
Preference number: 3 (lower is better)
Translates to: LFWMETNHAPCS*WLHPSPAEHSR
Trigger: CCTAGAATGCTCAGCTGGGGAAGGATGAAGCCATCAGCTACATGGTGCATGGTTGGTTTCCATCCAGAACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR GCA 72 bp TGGCCCTTCGGTCCTCTACAGGCAGCATCCTGGATGTaGTGGGAATGGTATATGGTTACTTCAAACTCAAGG +
Preference number: 3 (lower is better)
Translates to: WPFGPLQAASWM*WEWYMVTSNSR
Trigger: CCTTGAGTTTGAAGTAACCATATACCATTCCCAGCACATCCAGGATGCTGCCTGTAGAGGACCGAAGGGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR CCA 72 bp TCCATCTGGCCCTTCGGTCCTCTACAGGCAGCATCCTaGATGTGCTGGGAATGGTATATGGTTACTTCAAAC +
Preference number: 3 (lower is better)
Translates to: SIWPFGPLQAAS*MCWEWYMVTSN
Trigger: GTTTGAAGTAACCATATACCATTCCCAGCACATCCAGGATGCTGCCTGTAGAGGACCGAAGGGCCAGATGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR TCA 72 bp CCACCCCTTGACCACAAAGATGATGCACCTGCTCTATaGCAGCAGGCAAATGATAGCGTCCAAATACTGGAC +
Preference number: 3 (lower is better)
Translates to: PPLDHKDDAPAL*QQANDSVQILD
Trigger: GTCCAGTATTTGGACGCTATCATTTGCCTGCTGTCATAGAGCAGGTGCATCATCTTTGTGGTCAAGGGGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR GCA 72 bp ATGATAGCGTCCAAATACTGGACGCTTCCAAACAGCTaGAGACTGAGCTGTCTTATGGGGGTGAACTTCAGG +
Preference number: 3 (lower is better)
Translates to: MIASKYWTLPNS*RLSCLMGVNFR
Trigger: CCTGAAGTTCACCCCCATAAGACAGCTCAGTCTGCAGCTGTTTGGAAGCGTCCAGTATTTGGACGCTATCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR CCA 72 bp CTCCTTCCCTGTTCAGTCATTAGAGCCTGTTCTGGATaGAAACCAACCATGCACCATGTAGCTGATGGCTTC +
Preference number: 3 (lower is better)
Translates to: LLPCSVIRACSG*KPTMHHVADGF
Trigger: GAAGCCATCAGCTACATGGTGCATGGTTGGTTTCCATCCAGAACAGGCTCTAATGACTGAACAGGGAAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR TCA 72 bp CTTGAGACTCACTGTCTTCACAAGACTGAGGGACACTaGGGCCTTTGGGTCTTAGGTTTTGCAAGATTCACC +
Preference number: 3 (lower is better)
Translates to: LETHCLHKTEGH*GLWVLGFARFT
Trigger: GGTGAATCTTGCAAAACCTAAGACCCAAAGGCCTCAGTGTCCCTCAGTCTTGTGAAGACAGTGAGTCTCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR CCA 72 bp CTCTATGACAGCAGGCAAATGATAGCGTCCAAATACTaGACGCTTCCAAACAGCTGCAGACTGAGCTGTCTT +
Preference number: 3 (lower is better)
Translates to: LYDSRQMIASKY*TLPNSCRLSCL
Trigger: AAGACAGCTCAGTCTGCAGCTGTTTGGAAGCGTCCAGTATTTGGACGCTATCATTTGCCTGCTGTCATAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR CCA 72 bp CCCTTCGGTCCTCTACAGGCAGCATCCTGGATGTGCTaGGAATGGTATATGGTTACTTCAAACTCAAGGAAA +
Preference number: 3 (lower is better)
Translates to: PFGPLQAASWMC*EWYMVTSNSRK
Trigger: TTTCCTTGAGTTTGAAGTAACCATATACCATTCCCAGCACATCCAGGATGCTGCCTGTAGAGGACCGAAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR CAA 90 bp TGGACGCTTCCAAACAGCTGCAGACTGAGCTGTCTTATGGGGGTGAACTTCAGGAGGCCAATACATGTTTaGGTGCTAACATTTGTTTGT +
Preference number: 3 (lower is better)
Translates to: WTLPNSCRLSCLMGVNFRRPIHV*VLTFVC
Trigger: ACAAACAAATGTTAGCACCAAAACATGTATTGGCCT...CCTGAAGTTCACCCCCATAAGACAGCTCAGTCTGCAGCTGTTTGGAAGCGTCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR TCA 72 bp CATGTGGCCATTATCTATGCAGGATTTCATTACAAGTaGGACCACACCAGAGCAAGGACATCAGAGGAAGGG +
Preference number: 3 (lower is better)
Translates to: HVAIIYAGFHYK*DHTRARTSEEG
Trigger: CCCTTCCTCTGATGTCCTTGCTCTGGTGTGGTCTCACTTGTAATGAAATCCTGCATAGATAATGGCCACATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR GCA 72 bp TATGTATACTTTTCTCTAAGTAACACTTGCCTCAGCTaGAGGCTGAACCCTGCACACTGTCTCTTGCAACCC +
Preference number: 3 (lower is better)
Translates to: YVYFSLSNTCLS*RLNPAHCLLQP
Trigger: GGGTTGCAAGAGACAGTGTGCAGGGTTCAGCCTGCAGCTGAGGCAAGTGTTACTTAGAGAAAAGTATACATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR GCA 72 bp GGGAAGGAGAGTGCTGTCCAACAAAGATCCACTGTGTaGATGTGGCCATTATCTATGCAGGATTTCATTACA +
Preference number: 3 (lower is better)
Translates to: GKESAVQQRSTV*MWPLSMQDFIT
Trigger: TGTAATGAAATCCTGCATAGATAATGGCCACATGCACACAGTGGATCTTTGTTGGACAGCACTCTCCTTCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR CCA 72 bp GAGAGTGCTGTCCAACAAAGATCCACTGTGTGCATGTaGCCATTATCTATGCAGGATTTCATTACAAGTGAG +
Preference number: 3 (lower is better)
Translates to: ESAVQQRSTVCM*PLSMQDFITSE
Trigger: CTCACTTGTAATGAAATCCTGCATAGATAATGGCCACATGCACACAGTGGATCTTTGTTGGACAGCACTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR CCA 72 bp CAGACAGAACAAAAAGTCAAGTCCTATGGTGTTGAGTaGGGTCAGAGAGTTGAACTTTGTAAGGTCCATCTG +
Preference number: 3 (lower is better)
Translates to: QTEQKVKSYGVE*GQRVELCKVHL
Trigger: CAGATGGACCTTACAAAGTTCAACTCTCTGACCCCACTCAACACCATAGGACTTGACTTTTTGTTCTGTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR-3UTR CAA 90 bp CTCTGGGCAGGAAACTTCATATCCTTTGACACAGAGACATCTGCTATGATTAAAATGTGTACCAAACAGTaGAGCATTCTGCTTGATGCC +
Preference number: 3 (lower is better)
Translates to: LWAGNFISFDTETSAMIKMCTKQ*SILLDA
Trigger: GGCATCAAGCAGAATGCTCAACTGTTTGGTACACAT...TTTAATCATAGCAGATGTCTCTGTGTCAAAGGATATGAAGTTTCCTGCCCAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR GCA 72 bp CATCATAGGAAGGGTGCTGCAATCCCACACATTCACTaGTGCTCCATTAGAATGGTTTTGTTTTCTACATTT +
Preference number: 3 (lower is better)
Translates to: HHRKGAAIPHIH*CSIRMVLFSTF
Trigger: AAATGTAGAAAACAAAACCATTCTAATGGAGCAGCAGTGAATGTGTGGGATTGCAGCACCCTTCCTATGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR TCA 72 bp GTGTCAAGTTATGACAAGAAACAAACAAAGGCCACCTaGTTTAGTGATGGCAAACTTTACCAGGCACACTAT +
Preference number: 3 (lower is better)
Translates to: VSSYDKKQTKAT*FSDGKLYQAHY
Trigger: ATAGTGTGCCTGGTAAAGTTTGCCATCACTAAATCAGGTGGCCTTTGTTTGTTTCTTGTCATAACTTGACAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR CCA 72 bp AAGTCACACATTTTCATTGGTACAAACTGGTCTTTTTaGAAAGCAACTGTAGTATCCAAATTGATAGGAGGG +
Preference number: 3 (lower is better)
Translates to: KSHIFIGTNWSF*KATVVSKLIGG
Trigger: CCCTCCTATCAATTTGGATACTACAGTTGCTTTCCAAAAAGACCAGTTTGTACCAATGAAAATGTGTGACTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR CCA 90 bp CTGCAGGCTGAACCCTGCACACTGTCTCTTGCAACCCCCTTCTGGTCTGTCCCCCAGGCTCCTGATGCTTaGTCAGAGTGTGGATGCAAA +
Preference number: 4 (lower is better)
Translates to: LQAEPCTLSLATPFWSVPQAPDA*SECGCK
Trigger: TTTGCATCCACACTCTGACCAAGCATCAGGAGCCTG...GGGGACAGACCAGAAGGGGGTTGCAAGAGACAGTGTGCAGGGTTCAGCCTGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR GCA 90 bp TGTGGCTTAGATTCATCTAGGGGGTGTAGCCTGGACACCCAGAGATTGTCTGATGGCTGCAGCTGCTGCTaGTGCAGCTGCTGCATTGGC +
Preference number: 4 (lower is better)
Translates to: CGLDSSRGCSLDTQRLSDGCSCC*CSCCIG
Trigger: GCCAATGCAGCAGCTGCAGCAGCAGCAGCTGCAGCC...ATCAGACAATCTCTGGGTGTCCAGGCTACACCCCCTAGATGAATCTAAGCCACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR CCA 90 bp AGTTTGGAGCCCATCATAGGAAGGGTGCTGCAATCCCACACATTCACTGCTGCTTGGAGTTCGGGTTGCTaGTGGCTGGTCCTGTGGGAC +
Preference number: 4 (lower is better)
Translates to: SLEPIIGRVLQSHTFTAAWSSGC*WLVLWD
Trigger: GTCCCACAGGACCAGCCACCAGCAACCCGAACTCCA...AGCAGCAGTGAATGTGTGGGATTGCAGCACCCTTCCTATGATGGGCTCCAAACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR CAA 72 bp TGCCTCAGCTGCAGGCTGAACCCTGCACACTGTCTCTaGCAACCCCCTTCTGGTCTGTCCCCCATTACTAAT +
Preference number: 4 (lower is better)
Translates to: CLSCRLNPAHCL*QPPSGLSPITN
Trigger: ATTAGTAATGGGGGACAGACCAGAAGGGGGTTGCAAGAGACAGTGTGCAGGGTTCAGCCTGCAGCTGAGGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR GCA 90 bp CTGCAGGCTGAACCCTGCACACTGTCTCTTGCAACCCCCTTCTGGTCTGTCCCCTTCTCCCGAAAAGCTTaGTGTCTTGTCTGTACCACA +
Preference number: 4 (lower is better)
Translates to: LQAEPCTLSLATPFWSVPFSRKA*CLVCTT
Trigger: TGTGGTACAGACAAGACAGCAAGCTTTTCGGGAGAA...GGGGACAGACCAGAAGGGGGTTGCAAGAGACAGTGTGCAGGGTTCAGCCTGCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR TCA 90 bp TGGACGCTTCCAAACAGCTGCAGACTGAGCTGTCTTATGGGGGTGAACTTCAGGAAGCACTTGCTAACATaGTGTTGGAGTTCGGGTTGC +
Preference number: 4 (lower is better)
Translates to: WTLPNSCRLSCLMGVNFRKHLLT*CWSSGC
Trigger: GCAACCCGAACTCCAACATCATGTTAGCAAGTGCTT...CCTGAAGTTCACCCCCATAAGACAGCTCAGTCTGCAGCTGTTTGGAAGCGTCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR CCA 90 bp AGTTTGGAGCCCATCATAGGAAGGGTGCTGCAATCCCACACATTCACTGCTGCTGGCTTCTCCATTCTTTaGTGGGTTTTGCTGAGCAGC +
Preference number: 4 (lower is better)
Translates to: SLEPIIGRVLQSHTFTAAGFSIL*WVLLSS
Trigger: GCTGCTCAGCAAAACCCACCAAAGAATGGAGAAGCC...AGCAGCAGTGAATGTGTGGGATTGCAGCACCCTTCCTATGATGGGCTCCAAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR CCA 90 bp TCATTACAAGTGAGACCACACCAGAGCAAGGACATCAGAGGAAGGGGCGGGCAATGTCAAAAGATCCACTaGCCAAATACTTCCCGTCGG +
Preference number: 4 (lower is better)
Translates to: SLQVRPHQSKDIRGRGGQCQKIH*PNTSRR
Trigger: CCGACGGGAAGTATTTGGCCAGTGGATCTTTTGACA...TTGCCCGCCCCTTCCTCTGATGTCCTTGCTCTGGTGTGGTCTCACTTGTAATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR TCA 90 bp TGGACGCTTCCAAACAGCTGCAGACTGAGCTGTCTTATGGGGGTGAACTTCAGGAGGGCAGGTGCTGAATaGAAAGGAAACTGTTGTTTG +
Preference number: 4 (lower is better)
Translates to: WTLPNSCRLSCLMGVNFRRAGAE*KGNCCL
Trigger: CAAACAACAGTTTCCTTTTCATTCAGCACCTGCCCT...CCTGAAGTTCACCCCCATAAGACAGCTCAGTCTGCAGCTGTTTGGAAGCGTCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR TCA 90 bp CCAACCATGCACCATGTAGCTGATGGCTTCATCCTTCCCCAGCTGAGCATTCTATATATCTCTTTGCTGTaGGCCTGGAGGTCATGGACA +
Preference number: 4 (lower is better)
Translates to: PTMHHVADGFILPQLSILYISLL*AWRSWT
Trigger: TGTCCATGACCTCCAGGCTCACAGCAAAGAGATATA...TAGAATGCTCAGCTGGGGAAGGATGAAGCCATCAGCTACATGGTGCATGGTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR CCA 90 bp TCATTACAAGTGAGACCACACCAGAGCAAGGACATCAGAGGAAGGGGCGGGCAATCATTAGTATGTCCTTaGAAGGTTTTGACTGGGCGA +
Preference number: 4 (lower is better)
Translates to: SLQVRPHQSKDIRGRGGQSLVCP*KVLTGR
Trigger: TCGCCCAGTCAAAACCTTCCAAGGACATACTAATGA...TTGCCCGCCCCTTCCTCTGATGTCCTTGCTCTGGTGTGGTCTCACTTGTAATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR CAA 72 bp TTCCAAGTAGACTCGAACAAGTCAAGTTCACACAGTTaGGAGCCCATCATAGGAAGGGTGCTGCAATCCCAC +
Preference number: 4 (lower is better)
Translates to: FQVDSNKSSSHS*EPIIGRVLQSH
Trigger: GTGGGATTGCAGCACCCTTCCTATGATGGGCTCCAAACTGTGTGAACTTGACTTGTTCGAGTCTACTTGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR GCA 90 bp TGTGGCTTAGATTCATCTAGGGGGTGTAGCCTGGACACCCAGAGATTGTCTGATATCATAGGAACCTGTTaGCAACAGTGTTCCATCGCT +
Preference number: 4 (lower is better)
Translates to: CGLDSSRGCSLDTQRLSDIIGTC*QQCSIA
Trigger: AGCGATGGAACACTGTTGGCAACAGGTTCCTATGAT...ATCAGACAATCTCTGGGTGTCCAGGCTACACCCCCTAGATGAATCTAAGCCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR GCA 90 bp TTAGTCAGACAGAACAAAAAGTCAAGTCCTATGGTGTTGAGTGGGGTCAGAGAGCCTTCACGTATACAGTaGCTCAGCACAAGCTGTGTG +
Preference number: 4 (lower is better)
Translates to: LVRQNKKSSPMVLSGVREPSRIQ*LSTSCV
Trigger: CACACAGCTTGTGCTGAGGCACTGTATACGTGAAGG...CTCTCTGACCCCACTCAACACCATAGGACTTGACTTTTTGTTCTGTCTGACTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR CCA 90 bp TTAGTCAGACAGAACAAAAAGTCAAGTCCTATGGTGTTGAGTGGGGTCAGAGAGCTTCCCCATTCACGGTaGCTTCTCCATTCTTTGGTG +
Preference number: 4 (lower is better)
Translates to: LVRQNKKSSPMVLSGVRELPHSR*LLHSLV
Trigger: CACCAAAGAATGGAGAAGCCACCGTGAATGGGGAAG...CTCTCTGACCCCACTCAACACCATAGGACTTGACTTTTTGTTCTGTCTGACTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR CAA 72 bp GATTCATCTAGGGGGTGTAGCCTGGACACCCAGAGATaGTCTGATGAACTCCTTATGTGTCATCTACCCATT +
Preference number: 4 (lower is better)
Translates to: DSSRGCSLDTQR*SDELLMCHLPI
Trigger: AATGGGTAGATGACACATAAGGAGTTCATCAGACAATCTCTGGGTGTCCAGGCTACACCCCCTAGATGAATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR TCA 90 bp CTCTGGGCAGGAAACTTCATATCCTTTGACACAGAGACATCTGCTATGATTAAATTTGGTGGGTTTTGCTaGGCAGCAGCTGCTGGTGTT +
Preference number: 4 (lower is better)
Translates to: LWAGNFISFDTETSAMIKFGGFC*AAAAGV
Trigger: AACACCAGCAGCTGCTGCTCAGCAAAACCCACCAAA...TTTAATCATAGCAGATGTCTCTGTGTCAAAGGATATGAAGTTTCCTGCCCAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR CAA 72 bp GAGGAGGCCAATACATGTTTTGGTGCTAACATTTGTTaGTTGTGTAGGGAGCACTTGACCTTCCTTGCTGGT +
Preference number: 4 (lower is better)
Translates to: EEANTCFGANIC*LCREHLTFLAG
Trigger: ACCAGCAAGGAAGGTCAAGTGCTCCCTACACAACAAACAAATGTTAGCACCAAAACATGTATTGGCCTCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR GCA 90 bp GTCACACATTTTCATTGGTACAAACTGGTCTTTTTGGAAAGCAACTGTAGTATCGCTGCTGCATTGGCTTaGTGCTGGGCAAGTTTCTCC +
Preference number: 4 (lower is better)
Translates to: VTHFHWYKLVFLESNCSIAAALA*CWASFS
Trigger: GGAGAAACTTGCCCAGCAGCAAGCCAATGCAGCAGC...GATACTACAGTTGCTTTCCAAAAAGACCAGTTTGTACCAATGAAAATGTGTGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR GCA 90 bp CACATTTTCATTGGTACAAACTGGTCTTTTTGGAAAGCAACTGTAGTATCCAAATGCAGCTGCTGCTGCTaGAGCTGCTGCATTGGCTTG +
Preference number: 4 (lower is better)
Translates to: HIFIGTNWSFWKATVVSKCSCCC*SCCIGL
Trigger: CAAGCCAATGCAGCAGCTGCAGCAGCAGCAGCTGCA...TTTGGATACTACAGTTGCTTTCCAAAAAGACCAGTTTGTACCAATGAAAATGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR CCA 90 bp GTCACACATTTTCATTGGTACAAACTGGTCTTTTTGGAAAGCAACTGTAGTATCCTGCAGCTGCTGCATTaGCTTGCTGCTGGGCAAGTT +
Preference number: 4 (lower is better)
Translates to: VTHFHWYKLVFLESNCSILQLLH*LAAGQV
Trigger: AACTTGCCCAGCAGCAAGCCAATGCAGCAGCTGCAG...GATACTACAGTTGCTTTCCAAAAAGACCAGTTTGTACCAATGAAAATGTGTGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR CAA 72 bp TTAGTCAGACAGAACAAAAAGTCAAGTCCTATGGTGTaGAGTGGGGTCAGAGAGTTGAACTTTGTAAGGTCC +
Preference number: 4 (lower is better)
Translates to: LVRQNKKSSPMV*SGVRELNFVRS
Trigger: GGACCTTACAAAGTTCAACTCTCTGACCCCACTCAACACCATAGGACTTGACTTTTTGTTCTGTCTGACTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR TCA 90 bp CTCTGGGCAGGAAACTTCATATCCTTTGACACAGAGACATCTGCTATGATTAAAATCAAGGGCAGGTGCTaGATGAAAAGGAAACTGTTG +
Preference number: 4 (lower is better)
Translates to: LWAGNFISFDTETSAMIKIKGRC*MKRKLL
Trigger: CAACAGTTTCCTTTTCATTCAGCACCTGCCCTTGAT...TTTAATCATAGCAGATGTCTCTGTGTCAAAGGATATGAAGTTTCCTGCCCAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR CCA 90 bp GAAAATGTTGAAAGAGGACCATGTCTGGCTGTACGTCTGACACAGACAATAAAATGTGGCTTTACTCGGTaGAATTTCAACGTCTCCATC +
Preference number: 4 (lower is better)
Translates to: ENVERGPCLAVRLTQTIKCGFTR*NFNVSI
Trigger: GATGGAGACGTTGAAATTCCACCGAGTAAAGCCACA...TTTTATTGTCTGTGTCAGACGTACAGCCAGACATGGTCCTCTTTCAACATTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR GCA 90 bp GAAAATGTTGAAAGAGGACCATGTCTGGCTGTACGTCTGACACAGACAATAAAATGGTATATATCTCTTTaGTGTGAGCCTGGAGGTCAT +
Preference number: 4 (lower is better)
Translates to: ENVERGPCLAVRLTQTIKWYISL*CEPGGH
Trigger: ATGACCTCCAGGCTCACAGCAAAGAGATATATACCA...TTTTATTGTCTGTGTCAGACGTACAGCCAGACATGGTCCTCTTTCAACATTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR CCA 90 bp CACATTTTCATTGGTACAAACTGGTCTTTTTGGAAAGCAACTGTAGTATCCAAAGTCCTTTCTGAAGAATaGAGATTAGGGCAGCCGGTG +
Preference number: 4 (lower is better)
Translates to: HIFIGTNWSFWKATVVSKVLSEE*RLGQPV
Trigger: CACCGGCTGCCCTAATCTCCATTCTTCAGAAAGGAC...TTTGGATACTACAGTTGCTTTCCAAAAAGACCAGTTTGTACCAATGAAAATGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR TCA 90 bp GAAAATGTTGAAAGAGGACCATGTCTGGCTGTACGTCTGACACAGACAATAAAAGCTATTCCAGTCCAATaGAGTGACATCCTTATTACT +
Preference number: 4 (lower is better)
Translates to: ENVERGPCLAVRLTQTIKAIPVQ*SDILIT
Trigger: AGTAATAAGGATGTCACTTCATTGGACTGGAATAGC...TTTTATTGTCTGTGTCAGACGTACAGCCAGACATGGTCCTCTTTCAACATTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR CCA 90 bp CACATTTTCATTGGTACAAACTGGTCTTTTTGGAAAGCAACTGTAGTATCCAAATTCTCCATTCTTTGGTaGGTTTTGCTGAGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: HIFIGTNWSFWKATVVSKFSILW*VLLSSS
Trigger: GCTGCTGCTCAGCAAAACCCACCAAAGAATGGAGAA...TTTGGATACTACAGTTGCTTTCCAAAAAGACCAGTTTGTACCAATGAAAATGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR CAA 72 bp GGAAGTGAATGGTCTTTAGGTTTCTTCTTGTGTAGATaGAACCTTTTTGTCCTAGTCTCACAGCCATTGACT +
Preference number: 4 (lower is better)
Translates to: GSEWSLGFFLCR*NLFVLVSQPLT
Trigger: AGTCAATGGCTGTGAGACTAGGACAAAAAGGTTCAATCTACACAAGAAGAAACCTAAAGACCATTCACTTCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR GCA 90 bp CACATTTTCATTGGTACAAACTGGTCTTTTTGGAAAGCAACTGTAGTATCCAAATATGTTGACCTAAGGTaGTGGCTAGGTTACCATCTT +
Preference number: 4 (lower is better)
Translates to: HIFIGTNWSFWKATVVSKYVDLR*WLGYHL
Trigger: AAGATGGTAACCTAGCCAGCACCTTAGGTCAACATA...TTTGGATACTACAGTTGCTTTCCAAAAAGACCAGTTTGTACCAATGAAAATGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR CAA 72 bp TCATCTACCCATTACCACCATATAGCAATGTGGAACTaGTCAAATGAAAGTCATAACTTTACAATAGGCTGG +
Preference number: 4 (lower is better)
Translates to: SSTHYHHIAMWN*SNESHNFTIGW
Trigger: CCAGCCTATTGTAAAGTTATGACTTTCATTTGACAAGTTCCACATTGCTATATGGTGGTAATGGGTAGATGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR TCA 90 bp CACATTTTCATTGGTACAAACTGGTCTTTTTGGAAAGCAACTGTAGTATCCAAATCCATTGGCTTTGAGTaGTTATTTATTGCATGGGCT +
Preference number: 4 (lower is better)
Translates to: HIFIGTNWSFWKATVVSKSIGFE*LFIAWA
Trigger: AGCCCATGCAATAAATAATCACTCAAAGCCAATGGA...TTTGGATACTACAGTTGCTTTCCAAAAAGACCAGTTTGTACCAATGAAAATGTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
3UTR CAA 72 bp AAAGTCACACATTTTCATTGGTACAAACTGGTCTTTTaGGAAAGCAACTGTAGTATCCAAATTGATAGGAGG +
Preference number: 4 (lower is better)
Translates to: KVTHFHWYKLVF*ESNCSIQIDRR
Trigger: CCTCCTATCAATTTGGATACTACAGTTGCTTTCCAAAAAGACCAGTTTGTACCAATGAAAATGTGTGACTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS GCA 90 bp CACGGTGGCTTCTCCATTCTTTGGTGGGTTTTGCTGAGCAGCAGCTaGTGGTGTTGTAGCCGCTGTGCTTGTGGCTGTGGCTGCAGCTGC +
Preference number: 5 (lower is better)
Translates to: HGGFSILWWVLLSSS*WCCSRCACGCGCSC
Trigger: GCAGCTGCAGCCACAGCCACAAGCACAGCGGCTACAACACCAGCAGCTGCTGCTCAGCAAAACCCACCAAAGAATGGAGAAGCCACCGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR CAA 90 bp TCATTACAAGTGAGACCACACCAGAGCAAGGACATCAGAGGAAGGGGCGGGCAAGCGCTGGCACCCACTTaGTCTCCTCGAGCATTCCAG +
Preference number: 5 (lower is better)
Translates to: SLQVRPHQSKDIRGRGGQALAPT*SPRAFQ
Trigger: CTGGAATGCTCGAGGAGACAAAGTGGGTGCCAGCGC...TTGCCCGCCCCTTCCTCTGATGTCCTTGCTCTGGTGTGGTCTCACTTGTAATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR CAA 90 bp CTGCAGGCTGAACCCTGCACACTGTCTCTTGCAACCCCCTTCTGGTCTGTCCCCCAAATTATTGTTGTCTaGTCTACACCAGCACTCAAA +
Preference number: 5 (lower is better)
Translates to: LQAEPCTLSLATPFWSVPQIIVV*STPALK
Trigger: TTTGAGTGCTGGTGTAGACAAGACAACAATAATTTG...GGGGACAGACCAGAAGGGGGTTGCAAGAGACAGTGTGCAGGGTTCAGCCTGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR CAA 90 bp TTAGTCAGACAGAACAAAAAGTCAAGTCCTATGGTGTTGAGTGGGGTCAGAGAGATGTTGGAGTTCGGGTaGCTGGTGGCTGGTCCTGTG +
Preference number: 5 (lower is better)
Translates to: LVRQNKKSSPMVLSGVREMLEFG*LVAGPV
Trigger: CACAGGACCAGCCACCAGCAACCCGAACTCCAACAT...CTCTCTGACCCCACTCAACACCATAGGACTTGACTTTTTGTTCTGTCTGACTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR CAA 90 bp TTAGTCAGACAGAACAAAAAGTCAAGTCCTATGGTGTTGAGTGGGGTCAGAGAGTGGCTTCTCCATTCTTaGGTGGGTTTTGCTGAGCAG +
Preference number: 5 (lower is better)
Translates to: LVRQNKKSSPMVLSGVREWLLHS*VGFAEQ
Trigger: CTGCTCAGCAAAACCCACCAAAGAATGGAGAAGCCA...CTCTCTGACCCCACTCAACACCATAGGACTTGACTTTTTGTTCTGTCTGACTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR CAA 90 bp CCAACCATGCACCATGTAGCTGATGGCTTCATCCTTCCCCAGCTGAGCATTCTATCCCATTTGATAGCATaGACCTCATTAGTATGTCCT +
Preference number: 5 (lower is better)
Translates to: PTMHHVADGFILPQLSILSHLIA*TSLVCP
Trigger: AGGACATACTAATGAGGTCAATGCTATCAAATGGGA...TAGAATGCTCAGCTGGGGAAGGATGAAGCCATCAGCTACATGGTGCATGGTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR CAA 90 bp TTAGTCAGACAGAACAAAAAGTCAAGTCCTATGGTGTTGAGTGGGGTCAGAGAGCAGATATGGACACACTaGTCAAAAGATCCACTGGCC +
Preference number: 5 (lower is better)
Translates to: LVRQNKKSSPMVLSGVREQIWTH*SKDPLA
Trigger: GGCCAGTGGATCTTTTGACAAGTGTGTCCATATCTG...CTCTCTGACCCCACTCAACACCATAGGACTTGACTTTTTGTTCTGTCTGACTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS TCA 90 bp AACCTGTTGCCAACAGTGTTCCATCGCTATTCCAGTCCAATGAAGTaGCATCCTTATTACTGGGAACATCATGTCCACCTTCACGTATAC +
Preference number: 5 (lower is better)
Translates to: NLLPTVFHRYSSPMK*HPYYWEHHVHLHVY
Trigger: GTATACGTGAAGGTGGACATGATGTTCCCAGTAATAAGGATGTCACTTCATTGGACTGGAATAGCGATGGAACACTGTTGGCAACAGGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR CAA 90 bp CTCTGGGCAGGAAACTTCATATCCTTTGACACAGAGACATCTGCTATGATTAAATTTCTCCCGAAAAGCTaGCTGTCTTGTCTGTACCAC +
Preference number: 5 (lower is better)
Translates to: LWAGNFISFDTETSAMIKFLPKS*LSCLYH
Trigger: GTGGTACAGACAAGACAGCAAGCTTTTCGGGAGAAA...TTTAATCATAGCAGATGTCTCTGTGTCAAAGGATATGAAGTTTCCTGCCCAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR CAA 90 bp GTCACACATTTTCATTGGTACAAACTGGTCTTTTTGGAAAGCAACTGTAGTATCGAAAAGCTTGCTGTCTaGTCTGTACCACATCGGGCA +
Preference number: 5 (lower is better)
Translates to: VTHFHWYKLVFLESNCSIEKLAV*SVPHRA
Trigger: TGCCCGATGTGGTACAGACAAGACAGCAAGCTTTTC...GATACTACAGTTGCTTTCCAAAAAGACCAGTTTGTACCAATGAAAATGTGTGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR CAA 90 bp GAAAATGTTGAAAGAGGACCATGTCTGGCTGTACGTCTGACACAGACAATAAAAGAGCGTCCCAAATTATaGTTGTCTTGTCTACACCAG +
Preference number: 5 (lower is better)
Translates to: ENVERGPCLAVRLTQTIKERPKL*LSCLHQ
Trigger: CTGGTGTAGACAAGACAACAATAATTTGGGACGCTC...TTTTATTGTCTGTGTCAGACGTACAGCCAGACATGGTCCTCTTTCAACATTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS-3UTR CAA 90 bp GTCACACATTTTCATTGGTACAAACTGGTCTTTTTGGAAAGCAACTGTAGTATCCTCATTAGTATGTCCTaGGAAGGTTTTGACTGGGCG +
Preference number: 5 (lower is better)
Translates to: VTHFHWYKLVFLESNCSILISMS*EGFDWA
Trigger: CGCCCAGTCAAAACCTTCCAAGGACATACTAATGAG...GATACTACAGTTGCTTTCCAAAAAGACCAGTTTGTACCAATGAAAATGTGTGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS CCA 72 bp GCTGCTGCTGCTGCAGCTGCTGCATTGGCTTGCTGCTaGGCAAGTTTCTCCCGAAAAGCTTGCTGTCTTGTC +
Preference number: 6 (lower is better)
Translates to: AAAAAAAALACC*ASFSRKACCLV
Trigger: GACAAGACAGCAAGCTTTTCGGGAGAAACTTGCCCAGCAGCAAGCCAATGCAGCAGCTGCAGCAGCAGCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS CCA 72 bp TCCATTCTTTGGTGGGTTTTGCTGAGCAGCAGCTGCTaGTGTTGTAGCCGCTGTGCTTGTGGCTGTGGCTGC +
Preference number: 6 (lower is better)
Translates to: SILWWVLLSSSC*CCSRCACGCGC
Trigger: GCAGCCACAGCCACAAGCACAGCGGCTACAACACCAGCAGCTGCTGCTCAGCAAAACCCACCAAAGAATGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS CAA 72 bp GCTGCTGGGCAAGTTTCTCCCGAAAAGCTTGCTGTCTaGTCTGTACCACATCGGGCATCACAGCATCAATTA +
Preference number: 6 (lower is better)
Translates to: AAGQVSPEKLAV*SVPHRASQHQL
Trigger: TAATTGATGCTGTGATGCCCGATGTGGTACAGACAAGACAGCAAGCTTTTCGGGAGAAACTTGCCCAGCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12
CDS TCA 72 bp CCAACAGTGTTCCATCGCTATTCCAGTCCAATGAAGTaGCATCCTTATTACTGGGAACATCATGTCCACCTT +
Preference number: 6 (lower is better)
Translates to: PTVFHRYSSPMK*HPYYWEHHVHL
Trigger: AAGGTGGACATGATGTTCCCAGTAATAAGGATGTCACTTCATTGGACTGGAATAGCGATGGAACACTGTTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088217.12