RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TBCK (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028030

Ensembl transcript IDs: ENSMUST00000169172.5

Found 240 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCTGGCAACCCAGAGGCTGCCATCCCAGCTTCCCTCAGCATTCCCTaGGTGCTGCCATGCGAGTCCAGGCTGGTCACCGGTGAGGCAGTG +
Preference number: 1 (lower is better)
Translates to: SGNPEAAIPASLSIP*VLPCESRLVTGEAV
Trigger: CACTGCCTCACCGGTGACCAGCCTGGACTCGCATGGCAGCACCCAGGGAATGCTGAGGGAAGCTGGGATGGCAGCCTCTGGGTTGCCAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR TCA 90 bp CAGCATTCCCTGGGTGCTGCCATGCGAGTCCAGGCTGGTCACCGGTaGGGCAGTGGAGGGAGTGTGCAGCGTCAGCTCGTGTCTTTGAAG +
Preference number: 1 (lower is better)
Translates to: QHSLGAAMRVQAGHR*GSGGSVQRQLVSLK
Trigger: CTTCAAAGACACGAGCTGACGCTGCACACTCCCTCCACTGCCTCACCGGTGACCAGCCTGGACTCGCATGGCAGCACCCAGGGAATGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR GCA 90 bp CCCCTCTCAGCACCGGGAAACCACCGGGCTCGGGCCTCTGTCTGCTaGCACAGTCTCAGGAGCTTTCGTGCTCACAAGGAGAAAAGTGTT +
Preference number: 1 (lower is better)
Translates to: PLSAPGNHRARASVC*HSLRSFRAHKEKSV
Trigger: AACACTTTTCTCCTTGTGAGCACGAAAGCTCCTGAGACTGTGGCAGCAGACAGAGGCCCGAGCCCGGTGGTTTCCCGGTGCTGAGAGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR GCA 90 bp AGAGGCTGCTGCTGGCTCTCCGTACACATTCTCTTCTCCTCACACTaGAGTCAGGCTTTCGGAGCTGGGGAGCTCTGGCAACCCAGAGGC +
Preference number: 1 (lower is better)
Translates to: RGCCWLSVHILFSSH*SQAFGAGELWQPRG
Trigger: GCCTCTGGGTTGCCAGAGCTCCCCAGCTCCGAAAGCCTGACTGCAGTGTGAGGAGAAGAGAATGTGTACGGAGAGCCAGCAGCAGCCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR GCA 90 bp TTTCCCCTCTCAGCACCGGGAAACCACCGGGCTCGGGCCTCTGTCTaGTGCCACAGTCTCAGGAGCTTTCGTGCTCACAAGGAGAAAAGT +
Preference number: 1 (lower is better)
Translates to: FPLSAPGNHRARASV*CHSLRSFRAHKEKS
Trigger: ACTTTTCTCCTTGTGAGCACGAAAGCTCCTGAGACTGTGGCAGCAGACAGAGGCCCGAGCCCGGTGGTTTCCCGGTGCTGAGAGGGGAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CCA 90 bp CGTACACATTCTCTTCTCCTCACACTGCAGTCAGGCTTTCGGAGCTaGGGAGCTCTGGCAACCCAGAGGCTGCCATCCCAGCTTCCCTCA +
Preference number: 1 (lower is better)
Translates to: RTHSLLLTLQSGFRS*GALATQRLPSQLPS
Trigger: TGAGGGAAGCTGGGATGGCAGCCTCTGGGTTGCCAGAGCTCCCCAGCTCCGAAAGCCTGACTGCAGTGTGAGGAGAAGAGAATGTGTACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR GCA 90 bp CCGGGCTCGGGCCTCTGTCTGCTGCCACAGTCTCAGGAGCTTTCGTaGTCACAAGGAGAAAAGTGTTCTGTGGCAAAGCAGCAGAAGCTA +
Preference number: 1 (lower is better)
Translates to: PGSGLCLLPQSQELS*SQGEKCSVAKQQKL
Trigger: TAGCTTCTGCTGCTTTGCCACAGAACACTTTTCTCCTTGTGAGCACGAAAGCTCCTGAGACTGTGGCAGCAGACAGAGGCCCGAGCCCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CCA 90 bp TACCCCAGGGAGATGGCTCTGCCGAAACTCATTTTTCTTTGTGAGTaGCTACCAACTGGAGATAGCTTCTTGGTGAGGGACGGGCTTGCA +
Preference number: 1 (lower is better)
Translates to: YPREMALPKLIFLCE*LPTGDSFLVRDGLA
Trigger: TGCAAGCCCGTCCCTCACCAAGAAGCTATCTCCAGTTGGTAGCCACTCACAAAGAAAAATGAGTTTCGGCAGAGCCATCTCCCTGGGGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR TCA 90 bp CTTGCTGGTCACATTACATCCTCAGTCAGGACACAGGGAGATGAATaGTGGTGCGCAGCGTTCTTTCTCCCTTTATTCCATTCTGACCCC +
Preference number: 1 (lower is better)
Translates to: LAGHITSSVRTQGDE*WCAAFFLPLFHSDP
Trigger: GGGGTCAGAATGGAATAAAGGGAGAAAGAACGCTGCGCACCATCATTCATCTCCCTGTGTCCTGACTGAGGATGTAATGTGACCAGCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CCA 90 bp GACAGTCTGCTCAGTGCACTGGACGGCAGCTTTCTCAGTTCATTGTaGATTCTTGAGAGTGCCAAATTTGCCCTGTCGGCTGAATTCTTC +
Preference number: 1 (lower is better)
Translates to: DSLLSALDGSFLSSL*ILESAKFALSAEFF
Trigger: GAAGAATTCAGCCGACAGGGCAAATTTGGCACTCTCAAGAATCCACAATGAACTGAGAAAGCTGCCGTCCAGTGCACTGAGCAGACTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR TCA 90 bp ATCAGCTCTGTACCGTTGTGCAGGCAAGGAAGCCGTCGCTGCCCATaGAGACTGAGTGTGTTAGATCAGAAAAGCTGTTTCAGTCATTCT +
Preference number: 1 (lower is better)
Translates to: ISSVPLCRQGSRRCP*RLSVLDQKSCFSHS
Trigger: AGAATGACTGAAACAGCTTTTCTGATCTAACACACTCAGTCTTCATGGGCAGCGACGGCTTCCTTGCCTGCACAACGGTACAGAGCTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR TCA 90 bp AGTCAAACCGGGGCCACTGTGAGAAAGGTAAGATGGGAACAATTCTaGGTGGATTATCAGTGCTGCATTCTTCTTCCTGTGGAGACAGTT +
Preference number: 1 (lower is better)
Translates to: SQTGATVRKVRWEQF*VDYQCCILLPVETV
Trigger: AACTGTCTCCACAGGAAGAAGAATGCAGCACTGATAATCCACTCAGAATTGTTCCCATCTTACCTTTCTCACAGTGGCCCCGGTTTGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CCA 90 bp TCACATTTTCTAAACACCTTTGTTAAGACAGTCTGCTCAGTGCACTaGACGGCAGCTTTCTCAGTTCATTGTGGATTCTTGAGAGTGCCA +
Preference number: 1 (lower is better)
Translates to: SHFLNTFVKTVCSVH*TAAFSVHCGFLRVP
Trigger: TGGCACTCTCAAGAATCCACAATGAACTGAGAAAGCTGCCGTCCAGTGCACTGAGCAGACTGTCTTAACAAAGGTGTTTAGAAAATGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR TCA 90 bp CTTCGAGTTTCTTGCTATACAAGTGGACAAATATGTTACCAAATATaGCCAGTCTCTGAAGGTCCATTCTCTGAGATTGCTGCTACCACT +
Preference number: 1 (lower is better)
Translates to: LRVSCYTSGQICYQI*PVSEGPFSEIAATT
Trigger: AGTGGTAGCAGCAATCTCAGAGAATGGACCTTCAGAGACTGGTCATATTTGGTAACATATTTGTCCACTTGTATAGCAAGAAACTCGAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR TCA 90 bp CAGGTTTACTTTAAGAAACACTTGCTAAGGTCCACTTTATTGAGATaGTCTGCCACAGGTCAGCATGCTGTATTACTTGTTCTGTGTCTG +
Preference number: 1 (lower is better)
Translates to: QVYFKKHLLRSTLLR*SATGQHAVLLVLCL
Trigger: CAGACACAGAACAAGTAATACAGCATGCTGACCTGTGGCAGATCATCTCAATAAAGTGGACCTTAGCAAGTGTTTCTTAAAGTAAACCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CCA 90 bp AGAGTGCCAAATTTGCCCTGTCGGCTGAATTCTTCTGGCTTTATGTaGCAGTGTGGATTTATATGGCATGATCAGATTTCACTATTAAGA +
Preference number: 1 (lower is better)
Translates to: RVPNLPCRLNSSGFM*QCGFIWHDQISLLR
Trigger: TCTTAATAGTGAAATCTGATCATGCCATATAAATCCACACTGCCACATAAAGCCAGAAGAATTCAGCCGACAGGGCAAATTTGGCACTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CCA 90 bp AATGCCTTTGTCTTTCTGACTCCATATTGTGGTCTCACACAATTGTaGATTTTTAGATTCGGTAGAGCTCAGGACATAACTTTTCCAACC +
Preference number: 1 (lower is better)
Translates to: NAFVFLTPYCGLTQL*IFRFGRAQDITFPT
Trigger: GGTTGGAAAAGTTATGTCCTGAGCTCTACCGAATCTAAAAATCCACAATTGTGTGAGACCACAATATGGAGTCAGAAAGACAAAGGCATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR CCA 90 bp GCTTCCCTCAGCATTCCCTGGGTGCTGCCATGCGAGTCCAGGCTGGTCACCGGTATCAACTGCTGGGCATaGGGTCTGACTCTGTGGTTT +
Preference number: 2 (lower is better)
Translates to: ASLSIPWVLPCESRLVTGINCWA*GLTLWF
Trigger: AAACCACAGAGTCAGACCCCATGCCCAGCAGTTGAT...ACCGGTGACCAGCCTGGACTCGCATGGCAGCACCCAGGGAATGCTGAGGGAAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR GCA 90 bp GCTTCCCTCAGCATTCCCTGGGTGCTGCCATGCGAGTCCAGGCTGGTCACCGGTTTGAAGGGAATGCGATaGCTCTTCCTTCTCTTTCCT +
Preference number: 2 (lower is better)
Translates to: ASLSIPWVLPCESRLVTGLKGMR*LFLLFP
Trigger: AGGAAAGAGAAGGAAGAGGCATCGCATTCCCTTCAA...ACCGGTGACCAGCCTGGACTCGCATGGCAGCACCCAGGGAATGCTGAGGGAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR CCA 90 bp CTGTGGAGACAGTTAAACCACCAAAGACCGAAGAAAACCAGGAGCGCTGGCGAGGGCAGAGGCTGCTGCTaGCTCTCCGTACACATTCTC +
Preference number: 2 (lower is better)
Translates to: LWRQLNHQRPKKTRSAGEGRGCC*LSVHIL
Trigger: GAGAATGTGTACGGAGAGCCAGCAGCAGCCTCTGCC...CTCGCCAGCGCTCCTGGTTTTCTTCGGTCTTTGGTGGTTTAACTGTCTCCACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR TCA 90 bp ACCATAGGGTACCTGCACCCACACCTGTGTACTCACAAATTAAAAACAGATGCACAGGCTGGTCACCGGTaGGGCAGTGGAGGGAGTGTG +
Preference number: 2 (lower is better)
Translates to: TIGYLHPHLCTHKLKTDAQAGHR*GSGGSV
Trigger: CACACTCCCTCCACTGCCTCACCGGTGACCAGCCTG...TGCATCTGTTTTTAATTTGTGAGTACACAGGTGTGGGTGCAGGTACCCTATGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR CCA 90 bp GCTTCCCTCAGCATTCCCTGGGTGCTGCCATGCGAGTCCAGGCTGGTCACCGGTTACCACTGTTCACAATaGTCTAAACACATACACATG +
Preference number: 2 (lower is better)
Translates to: ASLSIPWVLPCESRLVTGYHCSQ*SKHIHM
Trigger: CATGTGTATGTGTTTAGACCATTGTGAACAGTGGTA...ACCGGTGACCAGCCTGGACTCGCATGGCAGCACCCAGGGAATGCTGAGGGAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR GCA 90 bp AAGTCCAGGCCCAGACGCTTGAGGTTTCTGTACAGATGTTCAGAGTCGTCACACAGACAGTCTGCTCAGTaGACTGGACGGCAGCTTTCT +
Preference number: 2 (lower is better)
Translates to: KSRPRRLRFLYRCSESSHRQSAQ*TGRQLS
Trigger: AGAAAGCTGCCGTCCAGTGCACTGAGCAGACTGTCT...GTGTGACGACTCTGAACATCTGTACAGAAACCTCAAGCGTCTGGGCCTGGACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR TCA 90 bp TTTTCTTTACAACGCTCATGTCTTCACCCTCTCCCATCTGTCACTGTGACCAGTCGGGCTGTGAGGGGGTaGTGGTACTCTGTCTTGTCA +
Preference number: 2 (lower is better)
Translates to: FSLQRSCLHPLPSVTVTSRAVRG*WYSVLS
Trigger: TGACAAGACAGAGTACCATCACCCCCTCACAGCCCG...ACTGGTCACAGTGACAGATGGGAGAGGGTGAAGACATGAGCGTTGTAAAGAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR TCA 90 bp TGTACCACCATAGGGTACCTGCACCCACACCTGTGTACTCACAAATTAAAAACAGCTGGGCATGGGGTCTaGCTCTGTGGTTTGTACCCC +
Preference number: 2 (lower is better)
Translates to: CTTIGYLHPHLCTHKLKTAGHGV*LCGLYP
Trigger: GGGGTACAAACCACAGAGTCAGACCCCATGCCCAGC...TGTTTTTAATTTGTGAGTACACAGGTGTGGGTGCAGGTACCCTATGGTGGTACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR GCA 90 bp TTTATTGAGATGATCTGCCACAGGTCAGCATGCTGTATTACTTGTTCTGTGTCTCCCTGGGGCAGAGGCTaGTGCTGGCTCTCCGTACAC +
Preference number: 2 (lower is better)
Translates to: FIEMICHRSACCITCSVSPWGRG*CWLSVH
Trigger: GTGTACGGAGAGCCAGCAGCAGCCTCTGCCCCAGGG...AGACACAGAACAAGTAATACAGCATGCTGACCTGTGGCAGATCATCTCAATAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR CCA 90 bp CCAGGGAGATGGCTCTGCCGAAACTCATTTTTCTTTGTGAGTGGCTACCAACTGGTCTGCTCAGTGCACTaGACGGCAGCTTTCTCAGTT +
Preference number: 2 (lower is better)
Translates to: PGRWLCRNSFFFVSGYQLVCSVH*TAAFSV
Trigger: AACTGAGAAAGCTGCCGTCCAGTGCACTGAGCAGAC...CAGTTGGTAGCCACTCACAAAGAAAAATGAGTTTCGGCAGAGCCATCTCCCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR GCA 90 bp TGTACCACCATAGGGTACCTGCACCCACACCTGTGTACTCACAAATTAAAAACATGGGGCAGAGGCTGCTaGTGGCTCTCCGTACACATT +
Preference number: 2 (lower is better)
Translates to: CTTIGYLHPHLCTHKLKTWGRGC*WLSVHI
Trigger: AATGTGTACGGAGAGCCAGCAGCAGCCTCTGCCCCA...TGTTTTTAATTTGTGAGTACACAGGTGTGGGTGCAGGTACCCTATGGTGGTACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR CCA 90 bp AGGGAGTGTGCAGCGTCAGCTCGTGTCTTTGAAGGGAATGCGATGCCTCTTCCTGAGAAAAGTGTTCTGTaGCAAAGCAGCAGAAGCTAT +
Preference number: 2 (lower is better)
Translates to: RECAASARVFEGNAMPLPEKSVL*QSSRSY
Trigger: ATAGCTTCTGCTGCTTTGCCACAGAACACTTTTCTC...AGGAAGAGGCATCGCATTCCCTTCAAAGACACGAGCTGACGCTGCACACTCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CAA 90 bp TGCTCAGTGCACTGGACGGCAGCTTTCTCAGTTCATTGTGGATTCTaGAGAGTGCCAAATTTGCCCTGTCGGCTGAATTCTTCTGGCTTT +
Preference number: 2 (lower is better)
Translates to: CSVHWTAAFSVHCGF*RVPNLPCRLNSSGF
Trigger: AAAGCCAGAAGAATTCAGCCGACAGGGCAAATTTGGCACTCTCAAGAATCCACAATGAACTGAGAAAGCTGCCGTCCAGTGCACTGAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR CCA 90 bp AGGGAGTGTGCAGCGTCAGCTCGTGTCTTTGAAGGGAATGCGATGCCTCTTCCTTCTTCTGGCTTTATGTaGCAGTGTGGATTTATATGG +
Preference number: 2 (lower is better)
Translates to: RECAASARVFEGNAMPLPSSGFM*QCGFIW
Trigger: CCATATAAATCCACACTGCCACATAAAGCCAGAAGA...AGGAAGAGGCATCGCATTCCCTTCAAAGACACGAGCTGACGCTGCACACTCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR CCA 90 bp CTGTGGAGACAGTTAAACCACCAAAGACCGAAGAAAACCAGGAGCGCTGGCGAGCTTGCCTTTCAAGTATaGAAACCTGAGTTCAGATGC +
Preference number: 2 (lower is better)
Translates to: LWRQLNHQRPKKTRSAGELAFQV*KPEFRC
Trigger: GCATCTGAACTCAGGTTTCCATACTTGAAAGGCAAG...CTCGCCAGCGCTCCTGGTTTTCTTCGGTCTTTGGTGGTTTAACTGTCTCCACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CAA 90 bp ACGGCAGCTTTCTCAGTTCATTGTGGATTCTTGAGAGTGCCAAATTaGCCCTGTCGGCTGAATTCTTCTGGCTTTATGTGGCAGTGTGGA +
Preference number: 2 (lower is better)
Translates to: TAAFSVHCGFLRVPN*PCRLNSSGFMWQCG
Trigger: TCCACACTGCCACATAAAGCCAGAAGAATTCAGCCGACAGGGCAAATTTGGCACTCTCAAGAATCCACAATGAACTGAGAAAGCTGCCGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR CCA 90 bp CTGTGGAGACAGTTAAACCACCAAAGACCGAAGAAAACCAGGAGCGCTGGCGAGTCTGACTCCATATTGTaGTCTCACACAATTGTGGAT +
Preference number: 2 (lower is better)
Translates to: LWRQLNHQRPKKTRSAGESDSIL*SHTIVD
Trigger: ATCCACAATTGTGTGAGACCACAATATGGAGTCAGA...CTCGCCAGCGCTCCTGGTTTTCTTCGGTCTTTGGTGGTTTAACTGTCTCCACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR TCA 90 bp CCAGGGAGATGGCTCTGCCGAAACTCATTTTTCTTTGTGAGTGGCTACCAACTGATATGTTACCAAATATaGCCAGTCTCTGAAGGTCCA +
Preference number: 2 (lower is better)
Translates to: PGRWLCRNSFFFVSGYQLICYQI*PVSEGP
Trigger: TGGACCTTCAGAGACTGGTCATATTTGGTAACATAT...CAGTTGGTAGCCACTCACAAAGAAAAATGAGTTTCGGCAGAGCCATCTCCCTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR GCA 90 bp TCTCATTTAATATGCTCTGCTCAGATTCCCCTGTCTCCCAGTTCTTTCCAACGCTCTCAGGAGCTTTCGTaGTCACAAGGAGAAAAGTGT +
Preference number: 2 (lower is better)
Translates to: SHLICSAQIPLSPSSFQRSQELS*SQGEKC
Trigger: ACACTTTTCTCCTTGTGAGCACGAAAGCTCCTGAGA...GCGTTGGAAAGAACTGGGAGACAGGGGAATCTGAGCAGAGCATATTAAATGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR CCA 90 bp CTGTGGAGACAGTTAAACCACCAAAGACCGAAGAAAACCAGGAGCGCTGGCGAGCAGTGTGGATTTATATaGCATGATCAGATTTCACTA +
Preference number: 2 (lower is better)
Translates to: LWRQLNHQRPKKTRSAGEQCGFI*HDQISL
Trigger: TAGTGAAATCTGATCATGCCATATAAATCCACACTG...CTCGCCAGCGCTCCTGGTTTTCTTCGGTCTTTGGTGGTTTAACTGTCTCCACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR TCA 90 bp TTTTCTTTACAACGCTCATGTCTTCACCCTCTCCCATCTGTCACTGTGACCAGTATGCCTTTGTCTTTCTaGCTCCATATTGTGGTCTCA +
Preference number: 2 (lower is better)
Translates to: FSLQRSCLHPLPSVTVTSMPLSF*LHIVVS
Trigger: TGAGACCACAATATGGAGTCAGAAAGACAAAGGCAT...ACTGGTCACAGTGACAGATGGGAGAGGGTGAAGACATGAGCGTTGTAAAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR CCA 90 bp TTTTCTTTACAACGCTCATGTCTTCACCCTCTCCCATCTGTCACTGTGACCAGTGGGAACAATTCTGAGTaGATTATCAGTGCTGCATTC +
Preference number: 2 (lower is better)
Translates to: FSLQRSCLHPLPSVTVTSGNNSE*IISAAF
Trigger: GAATGCAGCACTGATAATCCACTCAGAATTGTTCCC...ACTGGTCACAGTGACAGATGGGAGAGGGTGAAGACATGAGCGTTGTAAAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR GCA 90 bp TTTATTGAGATGATCTGCCACAGGTCAGCATGCTGTATTACTTGTTCTGTGTCTGTGGATTATCAGTGCTaGATTCTTCTTCCTGTGGAG +
Preference number: 2 (lower is better)
Translates to: FIEMICHRSACCITCSVSVDYQC*ILLPVE
Trigger: CTCCACAGGAAGAAGAATGCAGCACTGATAATCCAC...AGACACAGAACAAGTAATACAGCATGCTGACCTGTGGCAGATCATCTCAATAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR CCA 90 bp AGACTGAGTGTGTTAGATCAGAAAAGCTGTTTCAGTCATTCTTCGAGTTTCTTGTCGGCTGAATTCTTCTaGCTTTATGTGGCAGTGTGG +
Preference number: 2 (lower is better)
Translates to: RLSVLDQKSCFSHSSSFLSAEFF*LYVAVW
Trigger: CCACACTGCCACATAAAGCCAGAAGAATTCAGCCGA...CAAGAAACTCGAAGAATGACTGAAACAGCTTTTCTGATCTAACACACTCAGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR CCA 90 bp TTTTCTTTACAACGCTCATGTCTTCACCCTCTCCCATCTGTCACTGTGACCAGTGGTCTCACACAATTGTaGATTTTTAGATTCGGTAGA +
Preference number: 2 (lower is better)
Translates to: FSLQRSCLHPLPSVTVTSGLTQL*IFRFGR
Trigger: TCTACCGAATCTAAAAATCCACAATTGTGTGAGACC...ACTGGTCACAGTGACAGATGGGAGAGGGTGAAGACATGAGCGTTGTAAAGAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CAA 90 bp TACAGAATATCACAGAAAGAAAGTTGTAATAACAGAAGCTCAGGCTaGCTGGTCACATTACATCCTCAGTCAGGACACAGGGAGATGAAT +
Preference number: 2 (lower is better)
Translates to: YRISQKESCNNRSSG*LVTLHPQSGHREMN
Trigger: ATTCATCTCCCTGTGTCCTGACTGAGGATGTAATGTGACCAGCAAGCCTGAGCTTCTGTTATTACAACTTTCTTTCTGTGATATTCTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR TCA 90 bp TTTATTGAGATGATCTGCCACAGGTCAGCATGCTGTATTACTTGTTCTGTGTCTACTCATTTTTCTTTGTaGGTGGCTACCAACTGGAGA +
Preference number: 2 (lower is better)
Translates to: FIEMICHRSACCITCSVSTHFSL*VATNWR
Trigger: TCTCCAGTTGGTAGCCACTCACAAAGAAAAATGAGT...AGACACAGAACAAGTAATACAGCATGCTGACCTGTGGCAGATCATCTCAATAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR CCA 90 bp TGTACCACCATAGGGTACCTGCACCCACACCTGTGTACTCACAAATTAAAAACATTTCTCAGTTCATTGTaGATTCTTGAGAGTGCCAAA +
Preference number: 2 (lower is better)
Translates to: CTTIGYLHPHLCTHKLKTFLSSL*ILESAK
Trigger: TTTGGCACTCTCAAGAATCCACAATGAACTGAGAAA...TGTTTTTAATTTGTGAGTACACAGGTGTGGGTGCAGGTACCCTATGGTGGTACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR TCA 90 bp AGACTGAGTGTGTTAGATCAGAAAAGCTGTTTCAGTCATTCTTCGAGTTTCTTGTTCATTGTGGATTCTTaGGAGTGCCAAATTTGCCCT +
Preference number: 2 (lower is better)
Translates to: RLSVLDQKSCFSHSSSFLFIVDS*ECQICP
Trigger: AGGGCAAATTTGGCACTCTCAAGAATCCACAATGAA...CAAGAAACTCGAAGAATGACTGAAACAGCTTTTCTGATCTAACACACTCAGTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CAA 90 bp ATGAATGCCTTTGTCTTTCTGACTCCATATTGTGGTCTCACACAATaGTGGATTTTTAGATTCGGTAGAGCTCAGGACATAACTTTTCCA +
Preference number: 2 (lower is better)
Translates to: MNAFVFLTPYCGLTQ*WIFRFGRAQDITFP
Trigger: TGGAAAAGTTATGTCCTGAGCTCTACCGAATCTAAAAATCCACAATTGTGTGAGACCACAATATGGAGTCAGAAAGACAAAGGCATTCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR GCA 72 bp AGGCTGCCATCCCAGCTTCCCTCAGCATTCCCTGGGTaGTGCCATGCGAGTCCAGGCTGGTCACCGGTGAGG +
Preference number: 3 (lower is better)
Translates to: RLPSQLPSAFPG*CHASPGWSPVR
Trigger: CCTCACCGGTGACCAGCCTGGACTCGCATGGCAGCACCCAGGGAATGCTGAGGGAAGCTGGGATGGCAGCCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CCA 72 bp TCAGCATTCCCTGGGTGCTGCCATGCGAGTCCAGGCTaGTCACCGGTGAGGCAGTGGAGGGAGTGTGCAGCG +
Preference number: 3 (lower is better)
Translates to: SAFPGCCHASPG*SPVRQWRECAA
Trigger: CGCTGCACACTCCCTCCACTGCCTCACCGGTGACCAGCCTGGACTCGCATGGCAGCACCCAGGGAATGCTGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR GCA 72 bp ATCCCAGCTTCCCTCAGCATTCCCTGGGTGCTGCCATaGGAGTCCAGGCTGGTCACCGGTGAGGCAGTGGAG +
Preference number: 3 (lower is better)
Translates to: IPASLSIPWVLP*ESRLVTGEAVE
Trigger: CTCCACTGCCTCACCGGTGACCAGCCTGGACTCGCATGGCAGCACCCAGGGAATGCTGAGGGAAGCTGGGAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CCA 72 bp TCACACTGCAGTCAGGCTTTCGGAGCTGGGGAGCTCTaGCAACCCAGAGGCTGCCATCCCAGCTTCCCTCAG +
Preference number: 3 (lower is better)
Translates to: SHCSQAFGAGEL*QPRGCHPSFPQ
Trigger: CTGAGGGAAGCTGGGATGGCAGCCTCTGGGTTGCCAGAGCTCCCCAGCTCCGAAAGCCTGACTGCAGTGTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CCA 72 bp TGCCATGCGAGTCCAGGCTGGTCACCGGTGAGGCAGTaGAGGGAGTGTGCAGCGTCAGCTCGTGTCTTTGAA +
Preference number: 3 (lower is better)
Translates to: CHASPGWSPVRQ*RECAASARVFE
Trigger: TTCAAAGACACGAGCTGACGCTGCACACTCCCTCCACTGCCTCACCGGTGACCAGCCTGGACTCGCATGGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CCA 72 bp TCTCTTCTCCTCACACTGCAGTCAGGCTTTCGGAGCTaGGGAGCTCTGGCAACCCAGAGGCTGCCATCCCAG +
Preference number: 3 (lower is better)
Translates to: SLLLTLQSGFRS*GALATQRLPSQ
Trigger: CTGGGATGGCAGCCTCTGGGTTGCCAGAGCTCCCCAGCTCCGAAAGCCTGACTGCAGTGTGAGGAGAAGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR CAA 90 bp AGGGAGTGTGCAGCGTCAGCTCGTGTCTTTGAAGGGAATGCGATGCCTCTTCCTACTGGAGATAGCTTCTaGGTGAGGGACGGGCTTGCA +
Preference number: 3 (lower is better)
Translates to: RECAASARVFEGNAMPLPTGDSF*VRDGLA
Trigger: TGCAAGCCCGTCCCTCACCAAGAAGCTATCTCCAGT...AGGAAGAGGCATCGCATTCCCTTCAAAGACACGAGCTGACGCTGCACACTCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR TCA 72 bp GCAGTGGAGGGAGTGTGCAGCGTCAGCTCGTGTCTTTaGAGGGAATGCGATGCCTCTTCCTTCTCTTTCCTG +
Preference number: 3 (lower is better)
Translates to: AVEGVCSVSSCL*RECDASSFSFL
Trigger: CAGGAAAGAGAAGGAAGAGGCATCGCATTCCCTTCAAAGACACGAGCTGACGCTGCACACTCCCTCCACTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR GCA 72 bp GGCCTCTGTCTGCTGCCACAGTCTCAGGAGCTTTCGTaGTCACAAGGAGAAAAGTGTTCTGTGGCAAAGCAG +
Preference number: 3 (lower is better)
Translates to: GLCLLPQSQELS*SQGEKCSVAKQ
Trigger: CTGCTTTGCCACAGAACACTTTTCTCCTTGTGAGCACGAAAGCTCCTGAGACTGTGGCAGCAGACAGAGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR TCA 72 bp TTTGTGAGTGGCTACCAACTGGAGATAGCTTCTTGGTaGGGGACGGGCTTGCATCCATTTCCCCTCTCAGCA +
Preference number: 3 (lower is better)
Translates to: FVSGYQLEIASW*GTGLHPFPLSA
Trigger: TGCTGAGAGGGGAAATGGATGCAAGCCCGTCCCTCACCAAGAAGCTATCTCCAGTTGGTAGCCACTCACAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR CAA 90 bp CTGTGGAGACAGTTAAACCACCAAAGACCGAAGAAAACCAGGAGCGCTGGCGAGTCTGCCTTCTCTGTCTaGCCTTCCCTCTTTCATTTC +
Preference number: 3 (lower is better)
Translates to: LWRQLNHQRPKKTRSAGESAFSV*PSLFHF
Trigger: GAAATGAAAGAGGGAAGGCAAGACAGAGAAGGCAGA...CTCGCCAGCGCTCCTGGTTTTCTTCGGTCTTTGGTGGTTTAACTGTCTCCACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR TCA 72 bp GTACCGTTGTGCAGGCAAGGAAGCCGTCGCTGCCCATaGAGACTGAGTGTGTTAGATCAGAAAAGCTGTTTC +
Preference number: 3 (lower is better)
Translates to: VPLCRQGSRRCP*RLSVLDQKSCF
Trigger: GAAACAGCTTTTCTGATCTAACACACTCAGTCTTCATGGGCAGCGACGGCTTCCTTGCCTGCACAACGGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CCA 72 bp CTCAGTGCACTGGACGGCAGCTTTCTCAGTTCATTGTaGATTCTTGAGAGTGCCAAATTTGCCCTGTCGGCT +
Preference number: 3 (lower is better)
Translates to: LSALDGSFLSSL*ILESAKFALSA
Trigger: AGCCGACAGGGCAAATTTGGCACTCTCAAGAATCCACAATGAACTGAGAAAGCTGCCGTCCAGTGCACTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR GCA 72 bp TCTGACTCTGTGGTTTGTACCCCAGGGAGATGGCTCTaGCGAAACTCATTTTTCTTTGTGAGTGGCTACCAA +
Preference number: 3 (lower is better)
Translates to: SDSVVCTPGRWL*RNSFFFVSGYQ
Trigger: TTGGTAGCCACTCACAAAGAAAAATGAGTTTCGGCAGAGCCATCTCCCTGGGGTACAAACCACAGAGTCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CCA 72 bp AGGAGCTTTCGTGCTCACAAGGAGAAAAGTGTTCTGTaGCAAAGCAGCAGAAGCTATCAGCTCTGTACCGTT +
Preference number: 3 (lower is better)
Translates to: RSFRAHKEKSVL*QSSRSYQLCTV
Trigger: AACGGTACAGAGCTGATAGCTTCTGCTGCTTTGCCACAGAACACTTTTCTCCTTGTGAGCACGAAAGCTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR TCA 72 bp TTGAGGTTTCTGTACAGATGTTCAGAGTCGTCACACTaGCGGGGAATAGAAGGGACCAAGAGTGGACACTTT +
Preference number: 3 (lower is better)
Translates to: LRFLYRCSESSH*RGIEGTKSGHF
Trigger: AAAGTGTCCACTCTTGGTCCCTTCTATTCCCCGTCAGTGTGACGACTCTGAACATCTGTACAGAAACCTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR TCA 72 bp CACATTACATCCTCAGTCAGGACACAGGGAGATGAATaGTGGTGCGCAGCGTTCTTTCTCCCTTTATTCCAT +
Preference number: 3 (lower is better)
Translates to: HITSSVRTQGDE*WCAAFFLPLFH
Trigger: ATGGAATAAAGGGAGAAAGAACGCTGCGCACCATCATTCATCTCCCTGTGTCCTGACTGAGGATGTAATGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR GCA 72 bp CACAGAAAGAAAGTTGTAATAACAGAAGCTCAGGCTTaGTGGTCACATTACATCCTCAGTCAGGACACAGGG +
Preference number: 3 (lower is better)
Translates to: HRKKVVITEAQA*WSHYILSQDTG
Trigger: CCCTGTGTCCTGACTGAGGATGTAATGTGACCAGCAAGCCTGAGCTTCTGTTATTACAACTTTCTTTCTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CCA 72 bp CTAAACACCTTTGTTAAGACAGTCTGCTCAGTGCACTaGACGGCAGCTTTCTCAGTTCATTGTGGATTCTTG +
Preference number: 3 (lower is better)
Translates to: LNTFVKTVCSVH*TAAFSVHCGFL
Trigger: CAAGAATCCACAATGAACTGAGAAAGCTGCCGTCCAGTGCACTGAGCAGACTGTCTTAACAAAGGTGTTTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CCA 72 bp AGAAAGAAAGTTGTAATAACAGAAGCTCAGGCTTGCTaGTCACATTACATCCTCAGTCAGGACACAGGGAGA +
Preference number: 3 (lower is better)
Translates to: RKKVVITEAQAC*SHYILSQDTGR
Trigger: TCTCCCTGTGTCCTGACTGAGGATGTAATGTGACCAGCAAGCCTGAGCTTCTGTTATTACAACTTTCTTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR CAA 90 bp TTTATTGAGATGATCTGCCACAGGTCAGCATGCTGTATTACTTGTTCTGTGTCTAACAGAAGCTCAGGCTaGCTGGTCACATTACATCCT +
Preference number: 3 (lower is better)
Translates to: FIEMICHRSACCITCSVSNRSSG*LVTLHP
Trigger: AGGATGTAATGTGACCAGCAAGCCTGAGCTTCTGTT...AGACACAGAACAAGTAATACAGCATGCTGACCTGTGGCAGATCATCTCAATAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR GCA 72 bp GTCCACTTTATTGAGATGATCTGCCACAGGTCAGCATaGTGTATTACTTGTTCTGTGTCTGGGGTAAAATAC +
Preference number: 3 (lower is better)
Translates to: VHFIEMICHRSA*CITCSVSGVKY
Trigger: GTATTTTACCCCAGACACAGAACAAGTAATACAGCATGCTGACCTGTGGCAGATCATCTCAATAAAGTGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR GCA 72 bp GAAACACTTGCTAAGGTCCACTTTATTGAGATGATCTaGCACAGGTCAGCATGCTGTATTACTTGTTCTGTG +
Preference number: 3 (lower is better)
Translates to: ETLAKVHFIEMI*HRSACCITCSV
Trigger: CACAGAACAAGTAATACAGCATGCTGACCTGTGGCAGATCATCTCAATAAAGTGGACCTTAGCAAGTGTTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CCA 72 bp AATTTGCCCTGTCGGCTGAATTCTTCTGGCTTTATGTaGCAGTGTGGATTTATATGGCATGATCAGATTTCA +
Preference number: 3 (lower is better)
Translates to: NLPCRLNSSGFM*QCGFIWHDQIS
Trigger: TGAAATCTGATCATGCCATATAAATCCACACTGCCACATAAAGCCAGAAGAATTCAGCCGACAGGGCAAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR-3UTR CAA 90 bp TTCTCATTTAATATGCTCTGCTCAGATTCCCCTGTCTCCCAGTTCTTTCCAACGCATTCTTCGAGTTTCTaGCTATACAAGTGGACAAAT +
Preference number: 3 (lower is better)
Translates to: FSFNMLCSDSPVSQFFPTHSSSF*LYKWTN
Trigger: ATTTGTCCACTTGTATAGCAAGAAACTCGAAGAATG...CGTTGGAAAGAACTGGGAGACAGGGGAATCTGAGCAGAGCATATTAAATGAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CCA 72 bp GTCTTTCTGACTCCATATTGTGGTCTCACACAATTGTaGATTTTTAGATTCGGTAGAGCTCAGGACATAACT +
Preference number: 3 (lower is better)
Translates to: VFLTPYCGLTQL*IFRFGRAQDIT
Trigger: AGTTATGTCCTGAGCTCTACCGAATCTAAAAATCCACAATTGTGTGAGACCACAATATGGAGTCAGAAAGAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR TCA 72 bp TCTTGCTATACAAGTGGACAAATATGTTACCAAATATaGCCAGTCTCTGAAGGTCCATTCTCTGAGATTGCT +
Preference number: 3 (lower is better)
Translates to: SCYTSGQICYQI*PVSEGPFSEIA
Trigger: AGCAATCTCAGAGAATGGACCTTCAGAGACTGGTCATATTTGGTAACATATTTGTCCACTTGTATAGCAAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR TCA 72 bp TTTAAGAAACACTTGCTAAGGTCCACTTTATTGAGATaGTCTGCCACAGGTCAGCATGCTGTATTACTTGTT +
Preference number: 3 (lower is better)
Translates to: FKKHLLRSTLLR*SATGQHAVLLV
Trigger: AACAAGTAATACAGCATGCTGACCTGTGGCAGATCATCTCAATAAAGTGGACCTTAGCAAGTGTTTCTTAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR GCA 72 bp TCTTTTAGCAATCAATACATGAGCAATCAAATTTCTTaGCTAGCTAGGCGACCATTTGAGTCACGATTTCCA +
Preference number: 3 (lower is better)
Translates to: SFSNQYMSNQIS*LARRPFESRFP
Trigger: TGGAAATCGTGACTCAAATGGTCGCCTAGCTAGGCAAGAAATTTGATTGCTCATGTATTGATTGCTAAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR TCA 72 bp ACTAGCTTTCTACTTTCTGCCATAAGGAAGAGGTGGTaGAACACATCACATTTTCTAAACACCTTTGTTAAG +
Preference number: 3 (lower is better)
Translates to: TSFLLSAIRKRW*NTSHFLNTFVK
Trigger: CTTAACAAAGGTGTTTAGAAAATGTGATGTGTTTCACCACCTCTTCCTTATGGCAGAAAGTAGAAAGCTAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR GCA 90 bp GCTTCCCTCAGCATTCCCTGGGTGCTGCCATGCGAGTCCAGGCTGGTCACCGGTGAAGGTCTTCCAAACTaGGCTCACAGTGCTCCGCCA +
Preference number: 4 (lower is better)
Translates to: ASLSIPWVLPCESRLVTGEGLPN*AHSAPP
Trigger: TGGCGGAGCACTGTGAGCGCAGTTTGGAAGACCTTC...ACCGGTGACCAGCCTGGACTCGCATGGCAGCACCCAGGGAATGCTGAGGGAAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR GCA 90 bp GCTTCCCTCAGCATTCCCTGGGTGCTGCCATGCGAGTCCAGGCTGGTCACCGGTGAAAATTCGGGAGTGTaGAGACAGGTGGCTTGGAGC +
Preference number: 4 (lower is better)
Translates to: ASLSIPWVLPCESRLVTGENSGV*RQVAWS
Trigger: GCTCCAAGCCACCTGTCTGCACACTCCCGAATTTTC...ACCGGTGACCAGCCTGGACTCGCATGGCAGCACCCAGGGAATGCTGAGGGAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp GCTTCCCTCAGCATTCCCTGGGTGCTGCCATGCGAGTCCAGGCTGGTCACCGGTGTGGGGGTTTTGAAGTaGCCTGTCACTGTGAGCTCA +
Preference number: 4 (lower is better)
Translates to: ASLSIPWVLPCESRLVTGVGVLK*PVTVSS
Trigger: TGAGCTCACAGTGACAGGCCACTTCAAAACCCCCAC...ACCGGTGACCAGCCTGGACTCGCATGGCAGCACCCAGGGAATGCTGAGGGAAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp GCTTCCCTCAGCATTCCCTGGGTGCTGCCATGCGAGTCCAGGCTGGTCACCGGTCGTGAGGAGGCCTGTTaGCCTGATCTTGTTAATGCC +
Preference number: 4 (lower is better)
Translates to: ASLSIPWVLPCESRLVTGREEAC*PDLVNA
Trigger: GGCATTAACAAGATCAGGCCAACAGGCCTCCTCACG...ACCGGTGACCAGCCTGGACTCGCATGGCAGCACCCAGGGAATGCTGAGGGAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp CCACCGGGCTCGGGCCTCTGTCTGCTGCCACAGTCTCAGGAGCTTTCGTGCTCATGGCACAGTCTGGGGTaGGTGATGGTCTTAAGGATT +
Preference number: 4 (lower is better)
Translates to: PPGSGLCLLPQSQELSCSWHSLG*VMVLRI
Trigger: AATCCTTAAGACCATCACCCACCCCAGACTGTGCCA...TGAGCACGAAAGCTCCTGAGACTGTGGCAGCAGACAGAGGCCCGAGCCCGGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp GCTTCCCTCAGCATTCCCTGGGTGCTGCCATGCGAGTCCAGGCTGGTCACCGGTTCCAACAGGATATTATaGGGAGACAAGGCCCGGTGT +
Preference number: 4 (lower is better)
Translates to: ASLSIPWVLPCESRLVTGSNRIL*GDKARC
Trigger: ACACCGGGCCTTGTCTCCCCATAATATCCTGTTGGA...ACCGGTGACCAGCCTGGACTCGCATGGCAGCACCCAGGGAATGCTGAGGGAAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR GCA 90 bp GTCCACTTGTGTCTCAGTGTGACGGGCTGTGAGGGGGTGATGGTACTCTGTCTTAGACGGTCCCGCAGCTaGTGGAGGATGGCTACTCCA +
Preference number: 4 (lower is better)
Translates to: VHLCLSVTGCEGVMVLCLRRSRS*WRMATP
Trigger: TGGAGTAGCCATCCTCCAGCAGCTGCGGGACCGTCT...AAGACAGAGTACCATCACCCCCTCACAGCCCGTCACACTGAGACACAAGTGGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp AGGGAGTGTGCAGCGTCAGCTCGTGTCTTTGAAGGGAATGCGATGCCTCTTCCTCGGTCCCGCAGCTGCTaGAGGATGGCTACTCCAATG +
Preference number: 4 (lower is better)
Translates to: RECAASARVFEGNAMPLPRSRSC*RMATPM
Trigger: CATTGGAGTAGCCATCCTCCAGCAGCTGCGGGACCG...AGGAAGAGGCATCGCATTCCCTTCAAAGACACGAGCTGACGCTGCACACTCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR GCA 90 bp CCACCGGGCTCGGGCCTCTGTCTGCTGCCACAGTCTCAGGAGCTTTCGTGCTCAAGGCCCGGTGTACTATaGCATGCTTGTTCAAGTAAT +
Preference number: 4 (lower is better)
Translates to: PPGSGLCLLPQSQELSCSRPGVL*HACSSN
Trigger: ATTACTTGAACAAGCATGGCATAGTACACCGGGCCT...TGAGCACGAAAGCTCCTGAGACTGTGGCAGCAGACAGAGGCCCGAGCCCGGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR GCA 90 bp CCACCGGGCTCGGGCCTCTGTCTGCTGCCACAGTCTCAGGAGCTTTCGTGCTCAAGTGAGTCAAGACCTTaGCAGTACACAAGATCAGGA +
Preference number: 4 (lower is better)
Translates to: PPGSGLCLLPQSQELSCSSESRP*QYTRSG
Trigger: TCCTGATCTTGTGTACTGGCAAGGTCTTGACTCACT...TGAGCACGAAAGCTCCTGAGACTGTGGCAGCAGACAGAGGCCCGAGCCCGGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR GCA 90 bp CCACCGGGCTCGGGCCTCTGTCTGCTGCCACAGTCTCAGGAGCTTTCGTGCTCATGCCGCCATCTAGAATaGAGACTCTTGGGTATTTCA +
Preference number: 4 (lower is better)
Translates to: PPGSGLCLLPQSQELSCSCRHLE*RLLGIS
Trigger: TGAAATACCCAAGAGTCTGCATTCTAGATGGCGGCA...TGAGCACGAAAGCTCCTGAGACTGTGGCAGCAGACAGAGGCCCGAGCCCGGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp GGCCATCAACTGCTGGGCATGGGGTCTGACTCTGTGGTTTGTACCCCAGGGAGAGGCCTCTTAGAAGGATaGAAGGTGAGGCACTTCTTC +
Preference number: 4 (lower is better)
Translates to: GHQLLGMGSDSVVCTPGRGLLEG*KVRHFF
Trigger: GAAGAAGTGCCTCACCTTCCATCCTTCTAAGAGGCC...TCTCCCTGGGGTACAAACCACAGAGTCAGACCCCATGCCCAGCAGTTGATGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp GCTTCCCTCAGCATTCCCTGGGTGCTGCCATGCGAGTCCAGGCTGGTCACCGGTTTGGTTTACTGGACTTaGTTTTCTTGGTGGGGGTTT +
Preference number: 4 (lower is better)
Translates to: ASLSIPWVLPCESRLVTGLVYWT*FSWWGF
Trigger: AAACCCCCACCAAGAAAACCAAGTCCAGTAAACCAA...ACCGGTGACCAGCCTGGACTCGCATGGCAGCACCCAGGGAATGCTGAGGGAAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp GCTTCCCTCAGCATTCCCTGGGTGCTGCCATGCGAGTCCAGGCTGGTCACCGGTAATGTATCCCAGAGGTaGAAAATTTTGTGCAGTGGA +
Preference number: 4 (lower is better)
Translates to: ASLSIPWVLPCESRLVTGNVSQR*KILCSG
Trigger: TCCACTGCACAAAATTTTCCACCTCTGGGATACATT...ACCGGTGACCAGCCTGGACTCGCATGGCAGCACCCAGGGAATGCTGAGGGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR TCA 90 bp CCACCGGGCTCGGGCCTCTGTCTGCTGCCACAGTCTCAGGAGCTTTCGTGCTCACCAAGGCTTCATTGTTaGAATTTAGATACAGGAATG +
Preference number: 4 (lower is better)
Translates to: PPGSGLCLLPQSQELSCSPRLHC*NLDTGM
Trigger: CATTCCTGTATCTAAATTTCAACAATGAAGCCTTGG...TGAGCACGAAAGCTCCTGAGACTGTGGCAGCAGACAGAGGCCCGAGCCCGGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR TCA 90 bp CCACCGGGCTCGGGCCTCTGTCTGCTGCCACAGTCTCAGGAGCTTTCGTGCTCATACTCTTGTATTACATaGGAGTTGTCCTTCAAGAAG +
Preference number: 4 (lower is better)
Translates to: PPGSGLCLLPQSQELSCSYSCIT*ELSFKK
Trigger: CTTCTTGAAGGACAACTCTCATGTAATACAAGAGTA...TGAGCACGAAAGCTCCTGAGACTGTGGCAGCAGACAGAGGCCCGAGCCCGGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp AGGGAGTGTGCAGCGTCAGCTCGTGTCTTTGAAGGGAATGCGATGCCTCTTCCTGGGGCCAGAAGGCAATaGTTTTTCACTTGGCACATG +
Preference number: 4 (lower is better)
Translates to: RECAASARVFEGNAMPLPGARRQ*FFTWHM
Trigger: CATGTGCCAAGTGAAAAACCATTGCCTTCTGGCCCC...AGGAAGAGGCATCGCATTCCCTTCAAAGACACGAGCTGACGCTGCACACTCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp CTGTGGAGACAGTTAAACCACCAAAGACCGAAGAAAACCAGGAGCGCTGGCGAGCTCAGCTCTGGATCATaGAAGGCGATCATCTGGGAG +
Preference number: 4 (lower is better)
Translates to: LWRQLNHQRPKKTRSAGELSSGS*KAIIWE
Trigger: CTCCCAGATGATCGCCTTCCATGATCCAGAGCTGAG...CTCGCCAGCGCTCCTGGTTTTCTTCGGTCTTTGGTGGTTTAACTGTCTCCACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp GGCCATCAACTGCTGGGCATGGGGTCTGACTCTGTGGTTTGTACCCCAGGGAGACACCACCAGGAGCTTTaGTTTACTGGACTTGGTTTT +
Preference number: 4 (lower is better)
Translates to: GHQLLGMGSDSVVCTPGRHHQEL*FTGLGF
Trigger: AAAACCAAGTCCAGTAAACCAAAGCTCCTGGTGGTG...TCTCCCTGGGGTACAAACCACAGAGTCAGACCCCATGCCCAGCAGTTGATGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR TCA 90 bp CTGTGGAGACAGTTAAACCACCAAAGACCGAAGAAAACCAGGAGCGCTGGCGAGAGGGATGGATTCTCTTaGCAGGTCTGTCTTTGGAGG +
Preference number: 4 (lower is better)
Translates to: LWRQLNHQRPKKTRSAGERDGFS*QVCLWR
Trigger: CCTCCAAAGACAGACCTGTCAAGAGAATCCATCCCT...CTCGCCAGCGCTCCTGGTTTTCTTCGGTCTTTGGTGGTTTAACTGTCTCCACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp AGGGAGTGTGCAGCGTCAGCTCGTGTCTTTGAAGGGAATGCGATGCCTCTTCCTTGTGGCAAATTTGACTaGTCATCCTCCAGCAATGGG +
Preference number: 4 (lower is better)
Translates to: RECAASARVFEGNAMPLPCGKFD*SSSSNG
Trigger: CCCATTGCTGGAGGATGACCAGTCAAATTTGCCACA...AGGAAGAGGCATCGCATTCCCTTCAAAGACACGAGCTGACGCTGCACACTCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR TCA 90 bp CTGTGGAGACAGTTAAACCACCAAAGACCGAAGAAAACCAGGAGCGCTGGCGAGCCAATCTCGTTGAGGTaGTTACTCAGCTCTGGATCA +
Preference number: 4 (lower is better)
Translates to: LWRQLNHQRPKKTRSAGEPISLR*LLSSGS
Trigger: TGATCCAGAGCTGAGTAATCACCTCAACGAGATTGG...CTCGCCAGCGCTCCTGGTTTTCTTCGGTCTTTGGTGGTTTAACTGTCTCCACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR GCA 90 bp GGCCATCAACTGCTGGGCATGGGGTCTGACTCTGTGGTTTGTACCCCAGGGAGAGTACCTCATATGCTATaGACAGAACTGTTGAATGAC +
Preference number: 4 (lower is better)
Translates to: GHQLLGMGSDSVVCTPGRVPHML*TELLND
Trigger: GTCATTCAACAGTTCTGTGCATAGCATATGAGGTAC...TCTCCCTGGGGTACAAACCACAGAGTCAGACCCCATGCCCAGCAGTTGATGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp GGCCATCAACTGCTGGGCATGGGGTCTGACTCTGTGGTTTGTACCCCAGGGAGAACTTCACTGAACACCTaGTCCTTCATTAACTCATCT +
Preference number: 4 (lower is better)
Translates to: GHQLLGMGSDSVVCTPGRTSLNT*SFINSS
Trigger: AGATGAGTTAATGAAGGACCAGGTGTTCAGTGAAGT...TCTCCCTGGGGTACAAACCACAGAGTCAGACCCCATGCCCAGCAGTTGATGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp TTTTCTTTACAACGCTCATGTCTTCACCCTCTCCCATCTGTCACTGTGACCAGTACTGCTCTCCGAGGCTaGCTTTGGAGGCTGAGCATG +
Preference number: 4 (lower is better)
Translates to: FSLQRSCLHPLPSVTVTSTALRG*LWRLSM
Trigger: CATGCTCAGCCTCCAAAGCCAGCCTCGGAGAGCAGT...ACTGGTCACAGTGACAGATGGGAGAGGGTGAAGACATGAGCGTTGTAAAGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp GTCCACTTGTGTCTCAGTGTGACGGGCTGTGAGGGGGTGATGGTACTCTGTCTTGGTCACTTAAAGGGATaGATTCTCTTGACAGGTCTG +
Preference number: 4 (lower is better)
Translates to: VHLCLSVTGCEGVMVLCLGHLKG*ILLTGL
Trigger: CAGACCTGTCAAGAGAATCCATCCCTTTAAGTGACC...AAGACAGAGTACCATCACCCCCTCACAGCCCGTCACACTGAGACACAAGTGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CAA 72 bp CTGCTCAGTGCACTGGACGGCAGCTTTCTCAGTTCATaGTGGATTCTTGAGAGTGCCAAATTTGCCCTGTCG +
Preference number: 4 (lower is better)
Translates to: LLSALDGSFLSS*WILESAKFALS
Trigger: CGACAGGGCAAATTTGGCACTCTCAAGAATCCACAATGAACTGAGAAAGCTGCCGTCCAGTGCACTGAGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CAA 72 bp TTTCTTTGTGAGTGGCTACCAACTGGAGATAGCTTCTaGGTGAGGGACGGGCTTGCATCCATTTCCCCTCTC +
Preference number: 4 (lower is better)
Translates to: FLCEWLPTGDSF*VRDGLASISPL
Trigger: GAGAGGGGAAATGGATGCAAGCCCGTCCCTCACCAAGAAGCTATCTCCAGTTGGTAGCCACTCACAAAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR TCA 90 bp CTGTGGAGACAGTTAAACCACCAAAGACCGAAGAAAACCAGGAGCGCTGGCGAGCACAGAACTGTTGAATaGCTCACAGGCTTCCTTTCT +
Preference number: 4 (lower is better)
Translates to: LWRQLNHQRPKKTRSAGEHRTVE*LTGFLS
Trigger: AGAAAGGAAGCCTGTGAGTCATTCAACAGTTCTGTG...CTCGCCAGCGCTCCTGGTTTTCTTCGGTCTTTGGTGGTTTAACTGTCTCCACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR TCA 90 bp CTGTGGAGACAGTTAAACCACCAAAGACCGAAGAAAACCAGGAGCGCTGGCGAGTATGCACAGAACTGTTaGATGACTCACAGGCTTCCT +
Preference number: 4 (lower is better)
Translates to: LWRQLNHQRPKKTRSAGEYAQNC*MTHRLP
Trigger: AGGAAGCCTGTGAGTCATTCAACAGTTCTGTGCATA...CTCGCCAGCGCTCCTGGTTTTCTTCGGTCTTTGGTGGTTTAACTGTCTCCACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp TCTCATTTAATATGCTCTGCTCAGATTCCCCTGTCTCCCAGTTCTTTCCAACGCGAACGCTGCGCTGAATaGGATGTTGATGCTGCCTGC +
Preference number: 4 (lower is better)
Translates to: SHLICSAQIPLSPSSFQRERCAE*DVDAAC
Trigger: GCAGGCAGCATCAACATCCCATTCAGCGCAGCGTTC...GCGTTGGAAAGAACTGGGAGACAGGGGAATCTGAGCAGAGCATATTAAATGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR TCA 90 bp TTTTCTTTACAACGCTCATGTCTTCACCCTCTCCCATCTGTCACTGTGACCAGTCTCAGGTGCCAGGTATaGGGGATACCCTATTGGGAA +
Preference number: 4 (lower is better)
Translates to: FSLQRSCLHPLPSVTVTSLRCQV*GIPYWE
Trigger: TTCCCAATAGGGTATCCCTCATACCTGGCACCTGAG...ACTGGTCACAGTGACAGATGGGAGAGGGTGAAGACATGAGCGTTGTAAAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR TCA 90 bp AGGAGAAAAGTGTTCTGTGGCAAAGCAGCAGAAGCTATCAGCTCTGTACCGTTGGAATGGAGCACAGAGTaGGTCAAGACCTTGCCAGTA +
Preference number: 4 (lower is better)
Translates to: RRKVFCGKAAEAISSVPLEWSTE*VKTLPV
Trigger: TACTGGCAAGGTCTTGACTCACTCTGTGCTCCATTC...CAACGGTACAGAGCTGATAGCTTCTGCTGCTTTGCCACAGAACACTTTTCTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp TCTCATTTAATATGCTCTGCTCAGATTCCCCTGTCTCCCAGTTCTTTCCAACGCGCAGCTGCTGGAGGATaGCTACTCCAATGCAGAATG +
Preference number: 4 (lower is better)
Translates to: SHLICSAQIPLSPSSFQRAAAGG*LLQCRM
Trigger: CATTCTGCATTGGAGTAGCCATCCTCCAGCAGCTGC...GCGTTGGAAAGAACTGGGAGACAGGGGAATCTGAGCAGAGCATATTAAATGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CAA 72 bp CACTGGACGGCAGCTTTCTCAGTTCATTGTGGATTCTaGAGAGTGCCAAATTTGCCCTGTCGGCTGAATTCT +
Preference number: 4 (lower is better)
Translates to: HWTAAFSVHCGF*RVPNLPCRLNS
Trigger: AGAATTCAGCCGACAGGGCAAATTTGGCACTCTCAAGAATCCACAATGAACTGAGAAAGCTGCCGTCCAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR TCA 90 bp GTCCACTTGTGTCTCAGTGTGACGGGCTGTGAGGGGGTGATGGTACTCTGTCTTTTTTCACTTGGCACATaGTCAGTAGTTTTGGGAATT +
Preference number: 4 (lower is better)
Translates to: VHLCLSVTGCEGVMVLCLFSLGT*SVVLGI
Trigger: AATTCCCAAAACTACTGATCATGTGCCAAGTGAAAA...AAGACAGAGTACCATCACCCCCTCACAGCCCGTCACACTGAGACACAAGTGGAC
48% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR TCA 90 bp CCAGGGAGATGGCTCTGCCGAAACTCATTTTTCTTTGTGAGTGGCTACCAACTGGCATCTCAGAGAAGATaGAAACAGACTGGCAGGTTT +
Preference number: 4 (lower is better)
Translates to: PGRWLCRNSFFFVSGYQLASQRR*KQTGRF
Trigger: AAACCTGCCAGTCTGTTTTCATCTTCTCTGAGATGC...CAGTTGGTAGCCACTCACAAAGAAAAATGAGTTTCGGCAGAGCCATCTCCCTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR TCA 90 bp AGGAGAAAAGTGTTCTGTGGCAAAGCAGCAGAAGCTATCAGCTCTGTACCGTTGGGCACAAAGACAACGTaGCTGTGGTGTCATCTAAGA +
Preference number: 4 (lower is better)
Translates to: RRKVFCGKAAEAISSVPLGTKTT*LWCHLR
Trigger: TCTTAGATGACACCACAGTCACGTTGTCTTTGTGCC...CAACGGTACAGAGCTGATAGCTTCTGCTGCTTTGCCACAGAACACTTTTCTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR TCA 90 bp TGTACCACCATAGGGTACCTGCACCCACACCTGTGTACTCACAAATTAAAAACAGCTGGCTTTGGAGGCTaGGCATGCTGTCTGTATGTA +
Preference number: 4 (lower is better)
Translates to: CTTIGYLHPHLCTHKLKTAGFGG*ACCLYV
Trigger: TACATACAGACAGCATGCTCAGCCTCCAAAGCCAGC...TGTTTTTAATTTGTGAGTACACAGGTGTGGGTGCAGGTACCCTATGGTGGTACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR TCA 90 bp TCTCATTTAATATGCTCTGCTCAGATTCCCCTGTCTCCCAGTTCTTTCCAACGCAGTGGCCTGTCACTGTaGGCTCACACAAATCGATCA +
Preference number: 4 (lower is better)
Translates to: SHLICSAQIPLSPSSFQRSGLSL*AHTNRS
Trigger: TGATCGATTTGTGTGAGCTCACAGTGACAGGCCACT...GCGTTGGAAAGAACTGGGAGACAGGGGAATCTGAGCAGAGCATATTAAATGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp CTGTGGAGACAGTTAAACCACCAAAGACCGAAGAAAACCAGGAGCGCTGGCGAGGATTTTGATGGAATTTaGTGTGAGAGGAAGTCCGTT +
Preference number: 4 (lower is better)
Translates to: LWRQLNHQRPKKTRSAGEDFDGI*CERKSV
Trigger: AACGGACTTCCTCTCACACCAAATTCCATCAAAATC...CTCGCCAGCGCTCCTGGTTTTCTTCGGTCTTTGGTGGTTTAACTGTCTCCACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp CCAGGGAGATGGCTCTGCCGAAACTCATTTTTCTTTGTGAGTGGCTACCAACTGGGAGCTTTGGTTTACTaGACTTGGTTTTCTTGGTGG +
Preference number: 4 (lower is better)
Translates to: PGRWLCRNSFFFVSGYQLGALVY*TWFSWW
Trigger: CCACCAAGAAAACCAAGTCCAGTAAACCAAAGCTCC...CAGTTGGTAGCCACTCACAAAGAAAAATGAGTTTCGGCAGAGCCATCTCCCTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR TCA 90 bp CCAGGGAGATGGCTCTGCCGAAACTCATTTTTCTTTGTGAGTGGCTACCAACTGGAAACATCCAAGCTCTaGAACAATTTTCTCCCCACA +
Preference number: 4 (lower is better)
Translates to: PGRWLCRNSFFFVSGYQLETSKL*NNFLPT
Trigger: TGTGGGGAGAAAATTGTTTCAGAGCTTGGATGTTTC...CAGTTGGTAGCCACTCACAAAGAAAAATGAGTTTCGGCAGAGCCATCTCCCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp TTTTCTTTACAACGCTCATGTCTTCACCCTCTCCCATCTGTCACTGTGACCAGTGAAATATCCACATATTaGCACAGTCTGGGGTGGGTG +
Preference number: 4 (lower is better)
Translates to: FSLQRSCLHPLPSVTVTSEISTY*HSLGWV
Trigger: CACCCACCCCAGACTGTGCCAATATGTGGATATTTC...ACTGGTCACAGTGACAGATGGGAGAGGGTGAAGACATGAGCGTTGTAAAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp TTCTCATTTAATATGCTCTGCTCAGATTCCCCTGTCTCCCAGTTCTTTCCAACGGTCATCCTCCAGCAATaGGTAAAACGCTTCTCCACC +
Preference number: 4 (lower is better)
Translates to: FSFNMLCSDSPVSQFFPTVILQQ*VKRFST
Trigger: GGTGGAGAAGCGTTTTACCCATTGCTGGAGGATGAC...CGTTGGAAAGAACTGGGAGACAGGGGAATCTGAGCAGAGCATATTAAATGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp CCAGGGAGATGGCTCTGCCGAAACTCATTTTTCTTTGTGAGTGGCTACCAACTGTACTCCAATGCAGAATaGGAAAGAGGAATTTCCGAG +
Preference number: 4 (lower is better)
Translates to: PGRWLCRNSFFFVSGYQLYSNAE*ERGISE
Trigger: CTCGGAAATTCCTCTTTCCCATTCTGCATTGGAGTA...CAGTTGGTAGCCACTCACAAAGAAAAATGAGTTTCGGCAGAGCCATCTCCCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp AGACTGAGTGTGTTAGATCAGAAAAGCTGTTTCAGTCATTCTTCGAGTTTCTTGCTCCGAGGCTGGCTTTaGAGGCTGAGCATGCTGTCT +
Preference number: 4 (lower is better)
Translates to: RLSVLDQKSCFSHSSSFLLRGWL*RLSMLS
Trigger: AGACAGCATGCTCAGCCTCCAAAGCCAGCCTCGGAG...CAAGAAACTCGAAGAATGACTGAAACAGCTTTTCTGATCTAACACACTCAGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR TCA 90 bp ACCATAGGGTACCTGCACCCACACCTGTGTACTCACAAATTAAAAACAGATGCAAAGAGACCATACATCTaGTTTGGGGCCAGAAGGCAA +
Preference number: 4 (lower is better)
Translates to: TIGYLHPHLCTHKLKTDAKRPYI*FGARRQ
Trigger: TTGCCTTCTGGCCCCAAATCAGATGTATGGTCTCTT...TGCATCTGTTTTTAATTTGTGAGTACACAGGTGTGGGTGCAGGTACCCTATGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR TCA 90 bp TGTACCACCATAGGGTACCTGCACCCACACCTGTGTACTCACAAATTAAAAACATACACAAGATCAGGATaGGAAACCACCCAGGCTTTC +
Preference number: 4 (lower is better)
Translates to: CTTIGYLHPHLCTHKLKTYTRSG*ETTQAF
Trigger: GAAAGCCTGGGTGGTTTCTCATCCTGATCTTGTGTA...TGTTTTTAATTTGTGAGTACACAGGTGTGGGTGCAGGTACCCTATGGTGGTACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR GCA 90 bp TTTTCTTTACAACGCTCATGTCTTCACCCTCTCCCATCTGTCACTGTGACCAGTGGATGGCTACTCCAATaGAGAATGGGAAAGAGGAAT +
Preference number: 4 (lower is better)
Translates to: FSLQRSCLHPLPSVTVTSGWLLQ*RMGKRN
Trigger: ATTCCTCTTTCCCATTCTGCATTGGAGTAGCCATCC...ACTGGTCACAGTGACAGATGGGAGAGGGTGAAGACATGAGCGTTGTAAAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp TGTACCACCATAGGGTACCTGCACCCACACCTGTGTACTCACAAATTAAAAACAGAGTGTGCAGACAGGTaGCTTGGAGCGAATAATTTC +
Preference number: 4 (lower is better)
Translates to: CTTIGYLHPHLCTHKLKTECADR*LGANNF
Trigger: GAAATTATTCGCTCCAAGCCACCTGTCTGCACACTC...TGTTTTTAATTTGTGAGTACACAGGTGTGGGTGCAGGTACCCTATGGTGGTACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp AGGAGAAAAGTGTTCTGTGGCAAAGCAGCAGAAGCTATCAGCTCTGTACCGTTGGAGTGTCTTTGTCAATaGCGTCATACTTGGCATGAA +
Preference number: 4 (lower is better)
Translates to: RRKVFCGKAAEAISSVPLECLCQ*RHTWHE
Trigger: TTCATGCCAAGTATGACGCCATTGACAAAGACACTC...CAACGGTACAGAGCTGATAGCTTCTGCTGCTTTGCCACAGAACACTTTTCTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR TCA 90 bp TCTCATTTAATATGCTCTGCTCAGATTCCCCTGTCTCCCAGTTCTTTCCAACGCCTTTACACAAGTCACTaGTATCCTCAGGCAGAGTTA +
Preference number: 4 (lower is better)
Translates to: SHLICSAQIPLSPSSFQRLYTSH*YPQAEL
Trigger: TAACTCTGCCTGAGGATATCAGTGACTTGTGTAAAG...GCGTTGGAAAGAACTGGGAGACAGGGGAATCTGAGCAGAGCATATTAAATGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR TCA 90 bp ACCATAGGGTACCTGCACCCACACCTGTGTACTCACAAATTAAAAACAGATGCAGAAGGATGCATTCATTaGAGCCATTGGCCAAAAGAC +
Preference number: 4 (lower is better)
Translates to: TIGYLHPHLCTHKLKTDAEGCIH*SHWPKD
Trigger: GTCTTTTGGCCAATGGCTTCAATGAATGCATCCTTC...TGCATCTGTTTTTAATTTGTGAGTACACAGGTGTGGGTGCAGGTACCCTATGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR GCA 90 bp TTTTCTTTACAACGCTCATGTCTTCACCCTCTCCCATCTGTCACTGTGACCAGTACCACCAGTCTTTCATaGTTTCCCCTAGAAATATCC +
Preference number: 4 (lower is better)
Translates to: FSLQRSCLHPLPSVTVTSTTSLS*FPLEIS
Trigger: GGATATTTCTAGGGGAAAGCATGAAAGACTGGTGGT...ACTGGTCACAGTGACAGATGGGAGAGGGTGAAGACATGAGCGTTGTAAAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR GCA 90 bp ACCATAGGGTACCTGCACCCACACCTGTGTACTCACAAATTAAAAACAGATGCATTTGGGAATTCCTTGTaGAATTACCTCAGGTGCCAG +
Preference number: 4 (lower is better)
Translates to: TIGYLHPHLCTHKLKTDAFGNSL*NYLRCQ
Trigger: CTGGCACCTGAGGTAATTGCACAAGGAATTCCCAAA...TGCATCTGTTTTTAATTTGTGAGTACACAGGTGTGGGTGCAGGTACCCTATGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR GCA 90 bp TTCTCATTTAATATGCTCTGCTCAGATTCCCCTGTCTCCCAGTTCTTTCCAACGCTTCACCAGATGAGCTaGAAACTCAGCTGTTTGCTT +
Preference number: 4 (lower is better)
Translates to: FSFNMLCSDSPVSQFFPTLHQMS*KLSCLL
Trigger: AAGCAAACAGCTGAGTTTGCAGCTCATCTGGTGAAG...CGTTGGAAAGAACTGGGAGACAGGGGAATCTGAGCAGAGCATATTAAATGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp TGTACCACCATAGGGTACCTGCACCCACACCTGTGTACTCACAAATTAAAAACAACCATACATCTGATTTaGGGCCAGAAGGCAATGGTT +
Preference number: 4 (lower is better)
Translates to: CTTIGYLHPHLCTHKLKTTIHLI*GQKAMV
Trigger: AACCATTGCCTTCTGGCCCCAAATCAGATGTATGGT...TGTTTTTAATTTGTGAGTACACAGGTGTGGGTGCAGGTACCCTATGGTGGTACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CAA 72 bp TTCTCAGTTCATTGTGGATTCTTGAGAGTGCCAAATTaGCCCTGTCGGCTGAATTCTTCTGGCTTTATGTGG +
Preference number: 4 (lower is better)
Translates to: FSVHCGFLRVPN*PCRLNSSGFMW
Trigger: CCACATAAAGCCAGAAGAATTCAGCCGACAGGGCAAATTTGGCACTCTCAAGAATCCACAATGAACTGAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CAA 72 bp TCACAGAAAGAAAGTTGTAATAACAGAAGCTCAGGCTaGCTGGTCACATTACATCCTCAGTCAGGACACAGG +
Preference number: 4 (lower is better)
Translates to: SQKESCNNRSSG*LVTLHPQSGHR
Trigger: CCTGTGTCCTGACTGAGGATGTAATGTGACCAGCAAGCCTGAGCTTCTGTTATTACAACTTTCTTTCTGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR TCA 90 bp TTCTCATTTAATATGCTCTGCTCAGATTCCCCTGTCTCCCAGTTCTTTCCAACGTGCAGTGGAAATACATaGGTAAACATGGTGAGAAAC +
Preference number: 4 (lower is better)
Translates to: FSFNMLCSDSPVSQFFPTCSGNT*VNMVRN
Trigger: GTTTCTCACCATGTTTACTCATGTATTTCCACTGCA...CGTTGGAAAGAACTGGGAGACAGGGGAATCTGAGCAGAGCATATTAAATGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR GCA 90 bp AGACTGAGTGTGTTAGATCAGAAAAGCTGTTTCAGTCATTCTTCGAGTTTCTTGAGGCAGGGTAGCAGCTaGAGACAACTCATTATTGCT +
Preference number: 4 (lower is better)
Translates to: RLSVLDQKSCFSHSSSFLRQGSS*RQLIIA
Trigger: AGCAATAATGAGTTGTCTGCAGCTGCTACCCTGCCT...CAAGAAACTCGAAGAATGACTGAAACAGCTTTTCTGATCTAACACACTCAGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR GCA 90 bp TTTTCTTTACAACGCTCATGTCTTCACCCTCTCCCATCTGTCACTGTGACCAGTAGGGATGTCAACTCTTaGTTCTTTCCAGATTTGATT +
Preference number: 4 (lower is better)
Translates to: FSLQRSCLHPLPSVTVTSRDVNS*FFPDLI
Trigger: AATCAAATCTGGAAAGAAGCAAGAGTTGACATCCCT...ACTGGTCACAGTGACAGATGGGAGAGGGTGAAGACATGAGCGTTGTAAAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp TTTATTGAGATGATCTGCCACAGGTCAGCATGCTGTATTACTTGTTCTGTGTCTGTGATTACTCAGCTCTaGATCATGGAAGGCGATCAT +
Preference number: 4 (lower is better)
Translates to: FIEMICHRSACCITCSVSVITQL*IMEGDH
Trigger: ATGATCGCCTTCCATGATCCAGAGCTGAGTAATCAC...AGACACAGAACAAGTAATACAGCATGCTGACCTGTGGCAGATCATCTCAATAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR GCA 90 bp TTTTCTTTACAACGCTCATGTCTTCACCCTCTCCCATCTGTCACTGTGACCAGTCAGACAACTCATTATTaGTGTTTGAATGTGGCAAAT +
Preference number: 4 (lower is better)
Translates to: FSLQRSCLHPLPSVTVTSQTTHY*CLNVAN
Trigger: ATTTGCCACATTCAAACAGCAATAATGAGTTGTCTG...ACTGGTCACAGTGACAGATGGGAGAGGGTGAAGACATGAGCGTTGTAAAGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CCA 90 bp TTTATTGAGATGATCTGCCACAGGTCAGCATGCTGTATTACTTGTTCTGTGTCTAATCTGTTTCTTAGCTaGCACAAAGACAACGTGACT +
Preference number: 4 (lower is better)
Translates to: FIEMICHRSACCITCSVSNLFLS*HKDNVT
Trigger: AGTCACGTTGTCTTTGTGCCAGCTAAGAAACAGATT...AGACACAGAACAAGTAATACAGCATGCTGACCTGTGGCAGATCATCTCAATAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR GCA 90 bp TTTATTGAGATGATCTGCCACAGGTCAGCATGCTGTATTACTTGTTCTGTGTCTCTCAATAGATCTCTCTaGCAGGTAATCATTGTCTAT +
Preference number: 4 (lower is better)
Translates to: FIEMICHRSACCITCSVSLNRSL*QVIIVY
Trigger: ATAGACAATGATTACCTGGCAGAGAGATCTATTGAG...AGACACAGAACAAGTAATACAGCATGCTGACCTGTGGCAGATCATCTCAATAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
3UTR CAA 72 bp TTTGTCTTTCTGACTCCATATTGTGGTCTCACACAATaGTGGATTTTTAGATTCGGTAGAGCTCAGGACATA +
Preference number: 4 (lower is better)
Translates to: FVFLTPYCGLTQ*WIFRFGRAQDI
Trigger: TATGTCCTGAGCTCTACCGAATCTAAAAATCCACAATTGTGTGAGACCACAATATGGAGTCAGAAAGACAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp CCACCGGGCTCGGGCCTCTGTCTGCTGCCACAGTCTCAGGAGCTTTCGTGCTCAGCGCTGAATGGGATGTaGATGCTGCCTGCAATGTGC +
Preference number: 5 (lower is better)
Translates to: PPGSGLCLLPQSQELSCSALNGM*MLPAMC
Trigger: GCACATTGCAGGCAGCATCAACATCCCATTCAGCGC...TGAGCACGAAAGCTCCTGAGACTGTGGCAGCAGACAGAGGCCCGAGCCCGGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS GCA 90 bp GGTGGTGTAAGGGCCTTGGCTGAGCTCTCCTTCTGCCGTGAACGCTaGGCTGAATGGGATGTTGATGCTGCCTGCAATGTGCCCGCGAAC +
Preference number: 5 (lower is better)
Translates to: GGVRALAELSFCRER*AEWDVDAACNVPAN
Trigger: GTTCGCGGGCACATTGCAGGCAGCATCAACATCCCATTCAGCGCAGCGTTCACGGCAGAAGGAGAGCTCAGCCAAGGCCCTTACACCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CCA 90 bp AGGGCCTTGGCTGAGCTCTCCTTCTGCCGTGAACGCTGCGCTGAATaGGATGTTGATGCTGCCTGCAATGTGCCCGCGAACGAAGTCCTC +
Preference number: 5 (lower is better)
Translates to: RALAELSFCRERCAE*DVDAACNVPANEVL
Trigger: GAGGACTTCGTTCGCGGGCACATTGCAGGCAGCATCAACATCCCATTCAGCGCAGCGTTCACGGCAGAAGGAGAGCTCAGCCAAGGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS GCA 90 bp GCCGTGAACGCTGCGCTGAATGGGATGTTGATGCTGCCTGCAATGTaGCCGCGAACGAAGTCCTCACTGTTTCGGATGTCCACCACCAGG +
Preference number: 5 (lower is better)
Translates to: AVNAALNGMLMLPAM*PRTKSSLFRMSTTR
Trigger: CCTGGTGGTGGACATCCGAAACAGTGAGGACTTCGTTCGCGGGCACATTGCAGGCAGCATCAACATCCCATTCAGCGCAGCGTTCACGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp CCACCGGGCTCGGGCCTCTGTCTGCTGCCACAGTCTCAGGAGCTTTCGTGCTCACCACCACCAGGAGCTTaGGTTTACTGGACTTGGTTT +
Preference number: 5 (lower is better)
Translates to: PPGSGLCLLPQSQELSCSPPPGA*VYWTWF
Trigger: AAACCAAGTCCAGTAAACCAAAGCTCCTGGTGGTGG...TGAGCACGAAAGCTCCTGAGACTGTGGCAGCAGACAGAGGCCCGAGCCCGGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp GCTTCCCTCAGCATTCCCTGGGTGCTGCCATGCGAGTCCAGGCTGGTCACCGGTCTATGCACAGAACTGTaGAATGACTCACAGGCTTCC +
Preference number: 5 (lower is better)
Translates to: ASLSIPWVLPCESRLVTGLCTEL*NDSQAS
Trigger: GGAAGCCTGTGAGTCATTCAACAGTTCTGTGCATAG...ACCGGTGACCAGCCTGGACTCGCATGGCAGCACCCAGGGAATGCTGAGGGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS GCA 90 bp TCCTTCTGCCGTGAACGCTGCGCTGAATGGGATGTTGATGCTGCCTaGAATGTGCCCGCGAACGAAGTCCTCACTGTTTCGGATGTCCAC +
Preference number: 5 (lower is better)
Translates to: SFCRERCAEWDVDAA*NVPANEVLTVSDVH
Trigger: GTGGACATCCGAAACAGTGAGGACTTCGTTCGCGGGCACATTGCAGGCAGCATCAACATCCCATTCAGCGCAGCGTTCACGGCAGAAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS GCA 90 bp GTTGTGCAGCATGGTGGTGTAAGGGCCTTGGCTGAGCTCTCCTTCTaGCGTGAACGCTGCGCTGAATGGGATGTTGATGCTGCCTGCAAT +
Preference number: 5 (lower is better)
Translates to: VVQHGGVRALAELSF*RERCAEWDVDAACN
Trigger: ATTGCAGGCAGCATCAACATCCCATTCAGCGCAGCGTTCACGGCAGAAGGAGAGCTCAGCCAAGGCCCTTACACCACCATGCTGCACAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp GCTTCCCTCAGCATTCCCTGGGTGCTGCCATGCGAGTCCAGGCTGGTCACCGGTAGTTTTGGGAATTCCTaGTGCAATTACCTCAGGTGC +
Preference number: 5 (lower is better)
Translates to: ASLSIPWVLPCESRLVTGSFGNS*CNYLRC
Trigger: GCACCTGAGGTAATTGCACAAGGAATTCCCAAAACT...ACCGGTGACCAGCCTGGACTCGCATGGCAGCACCCAGGGAATGCTGAGGGAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp CCACCGGGCTCGGGCCTCTGTCTGCTGCCACAGTCTCAGGAGCTTTCGTGCTCATTTGGTTTACTGGACTaGGTTTTCTTGGTGGGGGTT +
Preference number: 5 (lower is better)
Translates to: PPGSGLCLLPQSQELSCSFGLLD*VFLVGV
Trigger: AACCCCCACCAAGAAAACCAAGTCCAGTAAACCAAA...TGAGCACGAAAGCTCCTGAGACTGTGGCAGCAGACAGAGGCCCGAGCCCGGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS GCA 90 bp CTGTACACTCAGCAGAGAAGTAAGGCGCTGAGCTTCGCACTACACTaGTCTCCGAGGCTGGCTTTGGAGGCTGAGCATGCTGTCTGTATG +
Preference number: 5 (lower is better)
Translates to: LYTQQRSKALSFALH*SPRLALEAEHAVCM
Trigger: CATACAGACAGCATGCTCAGCCTCCAAAGCCAGCCTCGGAGAGCAGTGTAGTGCGAAGCTCAGCGCCTTACTTCTCTGCTGAGTGTACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp GGCCATCAACTGCTGGGCATGGGGTCTGACTCTGTGGTTTGTACCCCAGGGAGAGACCATACATCTGATTaGGGGCCAGAAGGCAATGGT +
Preference number: 5 (lower is better)
Translates to: GHQLLGMGSDSVVCTPGRDHTSD*GPEGNG
Trigger: ACCATTGCCTTCTGGCCCCAAATCAGATGTATGGTC...TCTCCCTGGGGTACAAACCACAGAGTCAGACCCCATGCCCAGCAGTTGATGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS TCA 90 bp GCTGAGCTTCGCACTACACTGCTCTCCGAGGCTGGCTTTGGAGGCTaGGCATGCTGTCTGTATGTAGCACTTTTAGGAGTCCAGCAAAAC +
Preference number: 5 (lower is better)
Translates to: AELRTTLLSEAGFGG*ACCLYVALLGVQQN
Trigger: GTTTTGCTGGACTCCTAAAAGTGCTACATACAGACAGCATGCTCAGCCTCCAAAGCCAGCCTCGGAGAGCAGTGTAGTGCGAAGCTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS GCA 90 bp TCCAAACTGCGCTCACAGTGCTCCGCCACCACCACCAGTCTTTCATaGTTTCCCCTAGAAATATCCACATATTGGCACAGTCTGGGGTGG +
Preference number: 5 (lower is better)
Translates to: SKLRSQCSATTTSLS*FPLEISTYWHSLGW
Trigger: CCACCCCAGACTGTGCCAATATGTGGATATTTCTAGGGGAAAGCATGAAAGACTGGTGGTGGTGGCGGAGCACTGTGAGCGCAGTTTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp CTGTGGAGACAGTTAAACCACCAAAGACCGAAGAAAACCAGGAGCGCTGGCGAGTTCTTGGTGGGGGTTTaGAAGTGGCCTGTCACTGTG +
Preference number: 5 (lower is better)
Translates to: LWRQLNHQRPKKTRSAGEFLVGV*KWPVTV
Trigger: CACAGTGACAGGCCACTTCAAAACCCCCACCAAGAA...CTCGCCAGCGCTCCTGGTTTTCTTCGGTCTTTGGTGGTTTAACTGTCTCCACAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS TCA 90 bp GGAGCACAGAGTGAGTCAAGACCTTGCCAGTACACAAGATCAGGATaGGAAACCACCCAGGCTTTCAGTACACGCCGGAACTTTGCATGG +
Preference number: 5 (lower is better)
Translates to: GAQSESRPCQYTRSG*ETTQAFSTRRNFAW
Trigger: CCATGCAAAGTTCCGGCGTGTACTGAAAGCCTGGGTGGTTTCTCATCCTGATCTTGTGTACTGGCAAGGTCTTGACTCACTCTGTGCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS GCA 90 bp ACAGGCTTCCTTTCTCGTAGAAGGTCTTCCAAACTGCGCTCACAGTaGTCCGCCACCACCACCAGTCTTTCATGCTTTCCCCTAGAAATA +
Preference number: 5 (lower is better)
Translates to: TGFLSRRRSSKLRSQ*SATTTSLSCFPLEI
Trigger: TATTTCTAGGGGAAAGCATGAAAGACTGGTGGTGGTGGCGGAGCACTGTGAGCGCAGTTTGGAAGACCTTCTACGAGAAAGGAAGCCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS GCA 90 bp TTGAATGACTCACAGGCTTCCTTTCTCGTAGAAGGTCTTCCAAACTaGGCTCACAGTGCTCCGCCACCACCACCAGTCTTTCATGCTTTC +
Preference number: 5 (lower is better)
Translates to: LNDSQASFLVEGLPN*AHSAPPPPPVFHAF
Trigger: GAAAGCATGAAAGACTGGTGGTGGTGGCGGAGCACTGTGAGCGCAGTTTGGAAGACCTTCTACGAGAAAGGAAGCCTGTGAGTCATTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CCA 90 bp GGAATTTGGTGTGAGAGGAAGTCCGTTGCTTCCACAAACATCATGTaGGAGAGCAGAGGCAAAGAAGGTAAAGGCGCCCATCTCAGCATC +
Preference number: 5 (lower is better)
Translates to: GIWCERKSVASTNIM*ESRGKEGKGAHLSI
Trigger: GATGCTGAGATGGGCGCCTTTACCTTCTTTGCCTCTGCTCTCCCACATGATGTTTGTGGAAGCAACGGACTTCCTCTCACACCAAATTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CCA 90 bp GAGATCGGGAATGAAGCCAATCTCGTTGAGGTGATTACTCAGCTCTaGATCATGGAAGGCGATCATCTGGGAGAACACGGTCAGGTACTC +
Preference number: 5 (lower is better)
Translates to: EIGNEANLVEVITQL*IMEGDHLGEHGQVL
Trigger: GAGTACCTGACCGTGTTCTCCCAGATGATCGCCTTCCATGATCCAGAGCTGAGTAATCACCTCAACGAGATTGGCTTCATTCCCGATCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CCA 90 bp ATGCATTCATTGAAGCCATTGGCCAAAAGACGGTCCCGCAGCTGCTaGAGGATGGCTACTCCAATGCAGAATGGGAAAGAGGAATTTCCG +
Preference number: 5 (lower is better)
Translates to: MHSLKPLAKRRSRSC*RMATPMQNGKEEFP
Trigger: CGGAAATTCCTCTTTCCCATTCTGCATTGGAGTAGCCATCCTCCAGCAGCTGCGGGACCGTCTTTTGGCCAATGGCTTCAATGAATGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp CTGTGGAGACAGTTAAACCACCAAAGACCGAAGAAAACCAGGAGCGCTGGCGAGGTGAGAGGAAGTCCGTaGCTTCCACAAACATCATGT +
Preference number: 5 (lower is better)
Translates to: LWRQLNHQRPKKTRSAGEVRGSP*LPQTSC
Trigger: ACATGATGTTTGTGGAAGCAACGGACTTCCTCTCAC...CTCGCCAGCGCTCCTGGTTTTCTTCGGTCTTTGGTGGTTTAACTGTCTCCACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp ACCATAGGGTACCTGCACCCACACCTGTGTACTCACAAATTAAAAACAGATGCAGGTGGTGTAAGGGCCTaGGCTGAGCTCTCCTTCTGC +
Preference number: 5 (lower is better)
Translates to: TIGYLHPHLCTHKLKTDAGGVRA*AELSFC
Trigger: GCAGAAGGAGAGCTCAGCCAAGGCCCTTACACCACC...TGCATCTGTTTTTAATTTGTGAGTACACAGGTGTGGGTGCAGGTACCCTATGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS TCA 90 bp CCGCCATCTAGAATGCAGACTCTTGGGTATTTCATCTTCACCAGATaGGCTGCAAACTCAGCTGTTTGCTTAGCCACGTGGCCTACAACC +
Preference number: 5 (lower is better)
Translates to: PPSRMQTLGYFIFTR*AANSAVCLATWPTT
Trigger: GGTTGTAGGCCACGTGGCTAAGCAAACAGCTGAGTTTGCAGCTCATCTGGTGAAGATGAAATACCCAAGAGTCTGCATTCTAGATGGCGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS GCA 90 bp AGGATGCATTCATTGAAGCCATTGGCCAAAAGACGGTCCCGCAGCTaGTGGAGGATGGCTACTCCAATGCAGAATGGGAAAGAGGAATTT +
Preference number: 5 (lower is better)
Translates to: RMHSLKPLAKRRSRS*WRMATPMQNGKEEF
Trigger: AAATTCCTCTTTCCCATTCTGCATTGGAGTAGCCATCCTCCAGCAGCTGCGGGACCGTCTTTTGGCCAATGGCTTCAATGAATGCATCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS TCA 90 bp CAATGTCAATTTCTGGTAAGTCAGAGAAGAGAAGGATGCATTCATTaGAGCCATTGGCCAAAAGACGGTCCCGCAGCTGCTGGAGGATGG +
Preference number: 5 (lower is better)
Translates to: QCQFLVSQRREGCIH*SHWPKDGPAAAGGW
Trigger: CCATCCTCCAGCAGCTGCGGGACCGTCTTTTGGCCAATGGCTTCAATGAATGCATCCTTCTCTTCTCTGACTTACCAGAAATTGACATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp AGGGAGTGTGCAGCGTCAGCTCGTGTCTTTGAAGGGAATGCGATGCCTCTTCCTGCAGACAACTCATTATaGCTGTTTGAATGTGGCAAA +
Preference number: 5 (lower is better)
Translates to: RECAASARVFEGNAMPLPADNSL*LFECGK
Trigger: TTTGCCACATTCAAACAGCAATAATGAGTTGTCTGC...AGGAAGAGGCATCGCATTCCCTTCAAAGACACGAGCTGACGCTGCACACTCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp TTCTCATTTAATATGCTCTGCTCAGATTCCCCTGTCTCCCAGTTCTTTCCAACGGTACACGCCGGAACTTaGCATGGCCTTCTGGTGATG +
Preference number: 5 (lower is better)
Translates to: FSFNMLCSDSPVSQFFPTVHAGT*HGLLVM
Trigger: CATCACCAGAAGGCCATGCAAAGTTCCGGCGTGTAC...CGTTGGAAAGAACTGGGAGACAGGGGAATCTGAGCAGAGCATATTAAATGAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp AGGGAGTGTGCAGCGTCAGCTCGTGTCTTTGAAGGGAATGCGATGCCTCTTCCTGCCAAGGCTTCATTGTaGAAATTTAGATACAGGAAT +
Preference number: 5 (lower is better)
Translates to: RECAASARVFEGNAMPLPAKASL*KFRYRN
Trigger: ATTCCTGTATCTAAATTTCAACAATGAAGCCTTGGC...AGGAAGAGGCATCGCATTCCCTTCAAAGACACGAGCTGACGCTGCACACTCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp ACCATAGGGTACCTGCACCCACACCTGTGTACTCACAAATTAAAAACAGATGCATGCAAACTCAGCTGTTaGCTTAGCCACGTGGCCTAC +
Preference number: 5 (lower is better)
Translates to: TIGYLHPHLCTHKLKTDACKLSC*LSHVAY
Trigger: GTAGGCCACGTGGCTAAGCAAACAGCTGAGTTTGCA...TGCATCTGTTTTTAATTTGTGAGTACACAGGTGTGGGTGCAGGTACCCTATGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS GCA 90 bp TCCGATCCAACAGGATATTATGGGGAGACAAGGCCCGGTGTACTATaGCATGCTTGTTCAAGTAATGTAAGCCCTCAAGTACCTCATATG +
Preference number: 5 (lower is better)
Translates to: SDPTGYYGETRPGVL*HACSSNVSPQVPHM
Trigger: CATATGAGGTACTTGAGGGCTTACATTACTTGAACAAGCATGGCATAGTACACCGGGCCTTGTCTCCCCATAATATCCTGTTGGATCGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CCA 90 bp GGTTTGATAAAGGGGGTGTATAAAGGTGACACTTCACTGAACACCTaGTCCTTCATTAACTCATCTGGGGTTGGCCTCTTAGAAGGATGG +
Preference number: 5 (lower is better)
Translates to: GLIKGVYKGDTSLNT*SFINSSGVGLLEGW
Trigger: CCATCCTTCTAAGAGGCCAACCCCAGATGAGTTAATGAAGGACCAGGTGTTCAGTGAAGTGTCACCTTTATACACCCCCTTTATCAAACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp CCAGGGAGATGGCTCTGCCGAAACTCATTTTTCTTTGTGAGTGGCTACCAACTGGATGTCTACCTCAATTaGTCTATCTGTAGGAATCGG +
Preference number: 5 (lower is better)
Translates to: PGRWLCRNSFFFVSGYQLDVYLN*SICRNR
Trigger: CCGATTCCTACAGATAGACAAATTGAGGTAGACATC...CAGTTGGTAGCCACTCACAAAGAAAAATGAGTTTCGGCAGAGCCATCTCCCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp CTGTGGAGACAGTTAAACCACCAAAGACCGAAGAAAACCAGGAGCGCTGGCGAGTATGCCAAGGCTTCATaGTTGAAATTTAGATACAGG +
Preference number: 5 (lower is better)
Translates to: LWRQLNHQRPKKTRSAGEYAKAS*LKFRYR
Trigger: CCTGTATCTAAATTTCAACAATGAAGCCTTGGCATA...CTCGCCAGCGCTCCTGGTTTTCTTCGGTCTTTGGTGGTTTAACTGTCTCCACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp TCTCATTTAATATGCTCTGCTCAGATTCCCCTGTCTCCCAGTTCTTTCCAACGCTTTTCAGGAAGCTCCTaGATAATGTCCAGACACCCA +
Preference number: 5 (lower is better)
Translates to: SHLICSAQIPLSPSSFQRFSGSS*IMSRHP
Trigger: TGGGTGTCTGGACATTATCAAGGAGCTTCCTGAAAA...GCGTTGGAAAGAACTGGGAGACAGGGGAATCTGAGCAGAGCATATTAAATGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp ACCATAGGGTACCTGCACCCACACCTGTGTACTCACAAATTAAAAACAGATGCAACAATGACTTTCCCCTaGAAGTTGTGCAGCATGGTG +
Preference number: 5 (lower is better)
Translates to: TIGYLHPHLCTHKLKTDATMTFP*KLCSMV
Trigger: CACCATGCTGCACAACTTCAAGGGGAAAGTCATTGT...TGCATCTGTTTTTAATTTGTGAGTACACAGGTGTGGGTGCAGGTACCCTATGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp AGGAGAAAAGTGTTCTGTGGCAAAGCAGCAGAAGCTATCAGCTCTGTACCGTTGCTAGAATGCAGACTCTaGGGTATTTCATCTTCACCA +
Preference number: 5 (lower is better)
Translates to: RRKVFCGKAAEAISSVPLLECRL*GISSSP
Trigger: TGGTGAAGATGAAATACCCAAGAGTCTGCATTCTAG...CAACGGTACAGAGCTGATAGCTTCTGCTGCTTTGCCACAGAACACTTTTCTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS TCA 90 bp TCCACATATTGGCACAGTCTGGGGTGGGTGATGGTCTTAAGGATTTaGAAGCGACCTAAGATTTTGATGGAATTTGGTGTGAGAGGAAGT +
Preference number: 5 (lower is better)
Translates to: STYWHSLGWVMVLRI*KRPKILMEFGVRGS
Trigger: ACTTCCTCTCACACCAAATTCCATCAAAATCTTAGGTCGCTTTCAAATCCTTAAGACCATCACCCACCCCAGACTGTGCCAATATGTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp TTTTCTTTACAACGCTCATGTCTTCACCCTCTCCCATCTGTCACTGTGACCAGTGAGGGATGTCAACTCTaGCTTCTTTCCAGATTTGAT +
Preference number: 5 (lower is better)
Translates to: FSLQRSCLHPLPSVTVTSEGCQL*LLSRFD
Trigger: ATCAAATCTGGAAAGAAGCAAGAGTTGACATCCCTC...ACTGGTCACAGTGACAGATGGGAGAGGGTGAAGACATGAGCGTTGTAAAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp TTTATTGAGATGATCTGCCACAGGTCAGCATGCTGTATTACTTGTTCTGTGTCTAGAAATATCCACATATaGGCACAGTCTGGGGTGGGT +
Preference number: 5 (lower is better)
Translates to: FIEMICHRSACCITCSVSRNIHI*AQSGVG
Trigger: ACCCACCCCAGACTGTGCCAATATGTGGATATTTCT...AGACACAGAACAAGTAATACAGCATGCTGACCTGTGGCAGATCATCTCAATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp ACCATAGGGTACCTGCACCCACACCTGTGTACTCACAAATTAAAAACAGATGCAATGAGGGATACCCTATaGGGAAATCAACATCATCAC +
Preference number: 5 (lower is better)
Translates to: TIGYLHPHLCTHKLKTDAMRDTL*GNQHHH
Trigger: GTGATGATGTTGATTTCCCAATAGGGTATCCCTCAT...TGCATCTGTTTTTAATTTGTGAGTACACAGGTGTGGGTGCAGGTACCCTATGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp ACCATAGGGTACCTGCACCCACACCTGTGTACTCACAAATTAAAAACAGATGCAAACAGACTGGCAGGTTaGATAAAGGGGGTGTATAAA +
Preference number: 5 (lower is better)
Translates to: TIGYLHPHLCTHKLKTDANRLAG*IKGVYK
Trigger: TTTATACACCCCCTTTATCAAACCTGCCAGTCTGTT...TGCATCTGTTTTTAATTTGTGAGTACACAGGTGTGGGTGCAGGTACCCTATGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CCA 90 bp ACTTTCTCCATCTTCAAAGAGAAAATTCGGGAGTGTGCAGACAGGTaGCTTGGAGCGAATAATTTCCTTGTTTATAAGCTCCTTTTCCAG +
Preference number: 5 (lower is better)
Translates to: TFSIFKEKIRECADR*LGANNFLVYKLLFQ
Trigger: CTGGAAAAGGAGCTTATAAACAAGGAAATTATTCGCTCCAAGCCACCTGTCTGCACACTCCCGAATTTTCTCTTTGAAGATGGAGAAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp ACCATAGGGTACCTGCACCCACACCTGTGTACTCACAAATTAAAAACAGATGCAAAGCGACCTAAGATTTaGATGGAATTTGGTGTGAGA +
Preference number: 5 (lower is better)
Translates to: TIGYLHPHLCTHKLKTDAKRPKI*MEFGVR
Trigger: TCTCACACCAAATTCCATCAAAATCTTAGGTCGCTT...TGCATCTGTTTTTAATTTGTGAGTACACAGGTGTGGGTGCAGGTACCCTATGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS TCA 90 bp AAGGCGATCATCTGGGAGAACACGGTCAGGTACTCTTGTATTACATaGGAGTTGTCCTTCAAGAAGAAGTTATACAGGTATTTGGGAATA +
Preference number: 5 (lower is better)
Translates to: KAIIWENTVRYSCIT*ELSFKKKLYRYLGI
Trigger: TATTCCCAAATACCTGTATAACTTCTTCTTGAAGGACAACTCTCATGTAATACAAGAGTACCTGACCGTGTTCTCCCAGATGATCGCCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS GCA 90 bp TTTATCACATTTTCAGGAAGCTCCTTGATAATGTCCAGACACCCATaGTCCTCAGCGAGAACTATTATAGTATCATCTACACAGCCCAAA +
Preference number: 5 (lower is better)
Translates to: FITFSGSSLIMSRHP*SSARTIIVSSTQPK
Trigger: TTTGGGCTGTGTAGATGATACTATAATAGTTCTCGCTGAGGAGCATGGGTGTCTGGACATTATCAAGGAGCTTCCTGAAAATGTGATAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS-3UTR CAA 90 bp TTTATTGAGATGATCTGCCACAGGTCAGCATGCTGTATTACTTGTTCTGTGTCTGAGCGAATAATTTCCTaGTTTATAAGCTCCTTTTCC +
Preference number: 5 (lower is better)
Translates to: FIEMICHRSACCITCSVSERIIS*FISSFS
Trigger: GGAAAAGGAGCTTATAAACAAGGAAATTATTCGCTC...AGACACAGAACAAGTAATACAGCATGCTGACCTGTGGCAGATCATCTCAATAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CCA 72 bp GCTGAGCTCTCCTTCTGCCGTGAACGCTGCGCTGAATaGGATGTTGATGCTGCCTGCAATGTGCCCGCGAAC +
Preference number: 6 (lower is better)
Translates to: AELSFCRERCAE*DVDAACNVPAN
Trigger: GTTCGCGGGCACATTGCAGGCAGCATCAACATCCCATTCAGCGCAGCGTTCACGGCAGAAGGAGAGCTCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS GCA 72 bp CAGCAGAGAAGTAAGGCGCTGAGCTTCGCACTACACTaGTCTCCGAGGCTGGCTTTGGAGGCTGAGCATGCT +
Preference number: 6 (lower is better)
Translates to: QQRSKALSFALH*SPRLALEAEHA
Trigger: AGCATGCTCAGCCTCCAAAGCCAGCCTCGGAGAGCAGTGTAGTGCGAAGCTCAGCGCCTTACTTCTCTGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS GCA 72 bp GCTGCGCTGAATGGGATGTTGATGCTGCCTGCAATGTaGCCGCGAACGAAGTCCTCACTGTTTCGGATGTCC +
Preference number: 6 (lower is better)
Translates to: AALNGMLMLPAM*PRTKSSLFRMS
Trigger: GGACATCCGAAACAGTGAGGACTTCGTTCGCGGGCACATTGCAGGCAGCATCAACATCCCATTCAGCGCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS GCA 72 bp CGTGAACGCTGCGCTGAATGGGATGTTGATGCTGCCTaGAATGTGCCCGCGAACGAAGTCCTCACTGTTTCG +
Preference number: 6 (lower is better)
Translates to: RERCAEWDVDAA*NVPANEVLTVS
Trigger: CGAAACAGTGAGGACTTCGTTCGCGGGCACATTGCAGGCAGCATCAACATCCCATTCAGCGCAGCGTTCACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS GCA 72 bp CATGGTGGTGTAAGGGCCTTGGCTGAGCTCTCCTTCTaGCGTGAACGCTGCGCTGAATGGGATGTTGATGCT +
Preference number: 6 (lower is better)
Translates to: HGGVRALAELSF*RERCAEWDVDA
Trigger: AGCATCAACATCCCATTCAGCGCAGCGTTCACGGCAGAAGGAGAGCTCAGCCAAGGCCCTTACACCACCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 72 bp GGAGAGGGGACCGTGAGGAGGCCTGTTGGCCTGATCTaGTTAATGCCGCCATCTAGAATGCAGACTCTTGGG +
Preference number: 6 (lower is better)
Translates to: GEGTVRRPVGLI*LMPPSRMQTLG
Trigger: CCCAAGAGTCTGCATTCTAGATGGCGGCATTAACAAGATCAGGCCAACAGGCCTCCTCACGGTCCCCTCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS TCA 72 bp CGCACTACACTGCTCTCCGAGGCTGGCTTTGGAGGCTaGGCATGCTGTCTGTATGTAGCACTTTTAGGAGTC +
Preference number: 6 (lower is better)
Translates to: RTTLLSEAGFGG*ACCLYVALLGV
Trigger: GACTCCTAAAAGTGCTACATACAGACAGCATGCTCAGCCTCCAAAGCCAGCCTCGGAGAGCAGTGTAGTGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS GCA 72 bp CTTTCTCGTAGAAGGTCTTCCAAACTGCGCTCACAGTaGTCCGCCACCACCACCAGTCTTTCATGCTTTCCC +
Preference number: 6 (lower is better)
Translates to: LSRRRSSKLRSQ*SATTTSLSCFP
Trigger: GGGAAAGCATGAAAGACTGGTGGTGGTGGCGGAGCACTGTGAGCGCAGTTTGGAAGACCTTCTACGAGAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS GCA 72 bp TCACAGGCTTCCTTTCTCGTAGAAGGTCTTCCAAACTaGGCTCACAGTGCTCCGCCACCACCACCAGTCTTT +
Preference number: 6 (lower is better)
Translates to: SQASFLVEGLPN*AHSAPPPPPVF
Trigger: AAAGACTGGTGGTGGTGGCGGAGCACTGTGAGCGCAGTTTGGAAGACCTTCTACGAGAAAGGAAGCCTGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CCA 72 bp TTGAAGCCATTGGCCAAAAGACGGTCCCGCAGCTGCTaGAGGATGGCTACTCCAATGCAGAATGGGAAAGAG +
Preference number: 6 (lower is better)
Translates to: LKPLAKRRSRSC*RMATPMQNGKE
Trigger: CTCTTTCCCATTCTGCATTGGAGTAGCCATCCTCCAGCAGCTGCGGGACCGTCTTTTGGCCAATGGCTTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS GCA 72 bp TCATTGAAGCCATTGGCCAAAAGACGGTCCCGCAGCTaGTGGAGGATGGCTACTCCAATGCAGAATGGGAAA +
Preference number: 6 (lower is better)
Translates to: SLKPLAKRRSRS*WRMATPMQNGK
Trigger: TTTCCCATTCTGCATTGGAGTAGCCATCCTCCAGCAGCTGCGGGACCGTCTTTTGGCCAATGGCTTCAATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CCA 72 bp CATTGGCCAAAAGACGGTCCCGCAGCTGCTGGAGGATaGCTACTCCAATGCAGAATGGGAAAGAGGAATTTC +
Preference number: 6 (lower is better)
Translates to: HWPKDGPAAAGG*LLQCRMGKRNF
Trigger: GAAATTCCTCTTTCCCATTCTGCATTGGAGTAGCCATCCTCCAGCAGCTGCGGGACCGTCTTTTGGCCAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 72 bp GAGAAACCACCCAGGCTTTCAGTACACGCCGGAACTTaGCATGGCCTTCTGGTGATGACAACAGCTCGTCAT +
Preference number: 6 (lower is better)
Translates to: EKPPRLSVHAGT*HGLLVMTTARH
Trigger: ATGACGAGCTGTTGTCATCACCAGAAGGCCATGCAAAGTTCCGGCGTGTACTGAAAGCCTGGGTGGTTTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 90 bp GATCAGGATGAGAAACCACCCAGGCTTTCAGTACACGCCGGAACTTaGCATGGCCTTCTGGTGATGACAACAGCTCGTCATACTGATGAC +
Preference number: 6 (lower is better)
Translates to: DQDEKPPRLSVHAGT*HGLLVMTTARHTDD
Trigger: GTCATCAGTATGACGAGCTGTTGTCATCACCAGAAGGCCATGCAAAGTTCCGGCGTGTACTGAAAGCCTGGGTGGTTTCTCATCCTGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS TCA 72 bp AGTGAGTCAAGACCTTGCCAGTACACAAGATCAGGATaGGAAACCACCCAGGCTTTCAGTACACGCCGGAAC +
Preference number: 6 (lower is better)
Translates to: SESRPCQYTRSG*ETTQAFSTRRN
Trigger: GTTCCGGCGTGTACTGAAAGCCTGGGTGGTTTCTCATCCTGATCTTGTGTACTGGCAAGGTCTTGACTCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CCA 72 bp TGTGAGAGGAAGTCCGTTGCTTCCACAAACATCATGTaGGAGAGCAGAGGCAAAGAAGGTAAAGGCGCCCAT +
Preference number: 6 (lower is better)
Translates to: CERKSVASTNIM*ESRGKEGKGAH
Trigger: ATGGGCGCCTTTACCTTCTTTGCCTCTGCTCTCCCACATGATGTTTGTGGAAGCAACGGACTTCCTCTCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 72 bp AAGTCAGAGAAGAGAAGGATGCATTCATTGAAGCCATaGGCCAAAAGACGGTCCCGCAGCTGCTGGAGGATG +
Preference number: 6 (lower is better)
Translates to: KSEKRRMHSLKP*AKRRSRSCWRM
Trigger: CATCCTCCAGCAGCTGCGGGACCGTCTTTTGGCCAATGGCTTCAATGAATGCATCCTTCTCTTCTCTGACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 90 bp ACCAGGAGCTTTGGTTTACTGGACTTGGTTTTCTTGGTGGGGGTTTaGAAGTGGCCTGTCACTGTGAGCTCACACAAATCGATCAGGTCC +
Preference number: 6 (lower is better)
Translates to: TRSFGLLDLVFLVGV*KWPVTVSSHKSIRS
Trigger: GGACCTGATCGATTTGTGTGAGCTCACAGTGACAGGCCACTTCAAAACCCCCACCAAGAAAACCAAGTCCAGTAAACCAAAGCTCCTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 72 bp AGTCCTCACTGTTTCGGATGTCCACCACCAGGAGCTTaGGTTTACTGGACTTGGTTTTCTTGGTGGGGGTTT +
Preference number: 6 (lower is better)
Translates to: SPHCFGCPPPGA*VYWTWFSWWGF
Trigger: AAACCCCCACCAAGAAAACCAAGTCCAGTAAACCAAAGCTCCTGGTGGTGGACATCCGAAACAGTGAGGACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS TCA 72 bp TTTCTGGTAAGTCAGAGAAGAGAAGGATGCATTCATTaGAGCCATTGGCCAAAAGACGGTCCCGCAGCTGCT +
Preference number: 6 (lower is better)
Translates to: FLVSQRREGCIH*SHWPKDGPAAA
Trigger: AGCAGCTGCGGGACCGTCTTTTGGCCAATGGCTTCAATGAATGCATCCTTCTCTTCTCTGACTTACCAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CCA 72 bp AGTTTAATATGGCCCTTCCGATCCAACAGGATATTATaGGGAGACAAGGCCCGGTGTACTATGCCATGCTTG +
Preference number: 6 (lower is better)
Translates to: SLIWPFRSNRIL*GDKARCTMPCL
Trigger: CAAGCATGGCATAGTACACCGGGCCTTGTCTCCCCATAATATCCTGTTGGATCGGAAGGGCCATATTAAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CCA 72 bp AATGAAGCCAATCTCGTTGAGGTGATTACTCAGCTCTaGATCATGGAAGGCGATCATCTGGGAGAACACGGT +
Preference number: 6 (lower is better)
Translates to: NEANLVEVITQL*IMEGDHLGEHG
Trigger: ACCGTGTTCTCCCAGATGATCGCCTTCCATGATCCAGAGCTGAGTAATCACCTCAACGAGATTGGCTTCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 72 bp ATTTCTGGTAAGTCAGAGAAGAGAAGGATGCATTCATaGAAGCCATTGGCCAAAAGACGGTCCCGCAGCTGC +
Preference number: 6 (lower is better)
Translates to: ISGKSEKRRMHS*KPLAKRRSRSC
Trigger: GCAGCTGCGGGACCGTCTTTTGGCCAATGGCTTCAATGAATGCATCCTTCTCTTCTCTGACTTACCAGAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 90 bp CACCACCACCAGTCTTTCATGCTTTCCCCTAGAAATATCCACATATaGGCACAGTCTGGGGTGGGTGATGGTCTTAAGGATTTGAAAGCG +
Preference number: 6 (lower is better)
Translates to: HHHQSFMLSPRNIHI*AQSGVGDGLKDLKA
Trigger: CGCTTTCAAATCCTTAAGACCATCACCCACCCCAGACTGTGCCAATATGTGGATATTTCTAGGGGAAAGCATGAAAGACTGGTGGTGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 90 bp AAATTCGGGAGTGTGCAGACAGGTGGCTTGGAGCGAATAATTTCCTaGTTTATAAGCTCCTTTTCCAGGTCCCCTCCAGCCAAACACCAA +
Preference number: 6 (lower is better)
Translates to: KFGSVQTGGLERIIS*FISSFSRSPPAKHQ
Trigger: TTGGTGTTTGGCTGGAGGGGACCTGGAAAAGGAGCTTATAAACAAGGAAATTATTCGCTCCAAGCCACCTGTCTGCACACTCCCGAATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 90 bp TCAATGTCAATTTCTGGTAAGTCAGAGAAGAGAAGGATGCATTCATaGAAGCCATTGGCCAAAAGACGGTCCCGCAGCTGCTGGAGGATG +
Preference number: 6 (lower is better)
Translates to: SMSISGKSEKRRMHS*KPLAKRRSRSCWRM
Trigger: CATCCTCCAGCAGCTGCGGGACCGTCTTTTGGCCAATGGCTTCAATGAATGCATCCTTCTCTTCTCTGACTTACCAGAAATTGACATTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS TCA 72 bp AGAATGCAGACTCTTGGGTATTTCATCTTCACCAGATaGGCTGCAAACTCAGCTGTTTGCTTAGCCACGTGG +
Preference number: 6 (lower is better)
Translates to: RMQTLGYFIFTR*AANSAVCLATW
Trigger: CCACGTGGCTAAGCAAACAGCTGAGTTTGCAGCTCATCTGGTGAAGATGAAATACCCAAGAGTCTGCATTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CCA 72 bp AAGGGGGTGTATAAAGGTGACACTTCACTGAACACCTaGTCCTTCATTAACTCATCTGGGGTTGGCCTCTTA +
Preference number: 6 (lower is better)
Translates to: KGVYKGDTSLNT*SFINSSGVGLL
Trigger: TAAGAGGCCAACCCCAGATGAGTTAATGAAGGACCAGGTGTTCAGTGAAGTGTCACCTTTATACACCCCCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 72 bp CACTTAAAGGGATGGATTCTCTTGACAGGTCTGTCTTaGGAGGATCTGTACACTCAGCAGAGAAGTAAGGCG +
Preference number: 6 (lower is better)
Translates to: HLKGWILLTGLS*EDLYTQQRSKA
Trigger: CGCCTTACTTCTCTGCTGAGTGTACAGATCCTCCAAAGACAGACCTGTCAAGAGAATCCATCCCTTTAAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 72 bp TTTGGTTTACTGGACTTGGTTTTCTTGGTGGGGGTTTaGAAGTGGCCTGTCACTGTGAGCTCACACAAATCG +
Preference number: 6 (lower is better)
Translates to: FGLLDLVFLVGV*KWPVTVSSHKS
Trigger: CGATTTGTGTGAGCTCACAGTGACAGGCCACTTCAAAACCCCCACCAAGAAAACCAAGTCCAGTAAACCAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 90 bp AAGCGACCTAAGATTTTGATGGAATTTGGTGTGAGAGGAAGTCCGTaGCTTCCACAAACATCATGTGGGAGAGCAGAGGCAAAGAAGGTA +
Preference number: 6 (lower is better)
Translates to: KRPKILMEFGVRGSP*LPQTSCGRAEAKKV
Trigger: TACCTTCTTTGCCTCTGCTCTCCCACATGATGTTTGTGGAAGCAACGGACTTCCTCTCACACCAAATTCCATCAAAATCTTAGGTCGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 90 bp GCATGCTGTCTGTATGTAGCACTTTTAGGAGTCCAGCAAAACAGATaGACCGACTCACGTACGCAGCGTTCAATGTCAATTTCTGGTAAG +
Preference number: 6 (lower is better)
Translates to: ACCLYVALLGVQQNR*TDSRTQRSMSISGK
Trigger: CTTACCAGAAATTGACATTGAACGCTGCGTACGTGAGTCGGTCAATCTGTTTTGCTGGACTCCTAAAAGTGCTACATACAGACAGCATGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS TCA 72 bp TGGCACAGTCTGGGGTGGGTGATGGTCTTAAGGATTTaGAAGCGACCTAAGATTTTGATGGAATTTGGTGTG +
Preference number: 6 (lower is better)
Translates to: WHSLGWVMVLRI*KRPKILMEFGV
Trigger: CACACCAAATTCCATCAAAATCTTAGGTCGCTTTCAAATCCTTAAGACCATCACCCACCCCAGACTGTGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS GCA 72 bp ACAGGATATTATGGGGAGACAAGGCCCGGTGTACTATaGCATGCTTGTTCAAGTAATGTAAGCCCTCAAGTA +
Preference number: 6 (lower is better)
Translates to: TGYYGETRPGVL*HACSSNVSPQV
Trigger: TACTTGAGGGCTTACATTACTTGAACAAGCATGGCATAGTACACCGGGCCTTGTCTCCCCATAATATCCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 72 bp CAGTCTTTCATGCTTTCCCCTAGAAATATCCACATATaGGCACAGTCTGGGGTGGGTGATGGTCTTAAGGAT +
Preference number: 6 (lower is better)
Translates to: QSFMLSPRNIHI*AQSGVGDGLKD
Trigger: ATCCTTAAGACCATCACCCACCCCAGACTGTGCCAATATGTGGATATTTCTAGGGGAAAGCATGAAAGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 72 bp AGCCCTCAAGTACCTCATATGCTATGCACAGAACTGTaGAATGACTCACAGGCTTCCTTTCTCGTAGAAGGT +
Preference number: 6 (lower is better)
Translates to: SPQVPHMLCTEL*NDSQASFLVEG
Trigger: ACCTTCTACGAGAAAGGAAGCCTGTGAGTCATTCAACAGTTCTGTGCATAGCATATGAGGTACTTGAGGGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CCA 72 bp AGTCTTTCATGCTTTCCCCTAGAAATATCCACATATTaGCACAGTCTGGGGTGGGTGATGGTCTTAAGGATT +
Preference number: 6 (lower is better)
Translates to: SLSCFPLEISTY*HSLGWVMVLRI
Trigger: AATCCTTAAGACCATCACCCACCCCAGACTGTGCCAATATGTGGATATTTCTAGGGGAAAGCATGAAAGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 72 bp GAAGGCGATCATCTGGGAGAACACGGTCAGGTACTCTaGTATTACATGAGAGTTGTCCTTCAAGAAGAAGTT +
Preference number: 6 (lower is better)
Translates to: EGDHLGEHGQVL*YYMRVVLQEEV
Trigger: AACTTCTTCTTGAAGGACAACTCTCATGTAATACAAGAGTACCTGACCGTGTTCTCCCAGATGATCGCCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 72 bp CTGTATGTAGCACTTTTAGGAGTCCAGCAAAACAGATaGACCGACTCACGTACGCAGCGTTCAATGTCAATT +
Preference number: 6 (lower is better)
Translates to: LYVALLGVQQNR*TDSRTQRSMSI
Trigger: AATTGACATTGAACGCTGCGTACGTGAGTCGGTCAATCTGTTTTGCTGGACTCCTAAAAGTGCTACATACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 90 bp AGTAATGTAAGCCCTCAAGTACCTCATATGCTATGCACAGAACTGTaGAATGACTCACAGGCTTCCTTTCTCGTAGAAGGTCTTCCAAAC +
Preference number: 6 (lower is better)
Translates to: SNVSPQVPHMLCTEL*NDSQASFLVEGLPN
Trigger: GTTTGGAAGACCTTCTACGAGAAAGGAAGCCTGTGAGTCATTCAACAGTTCTGTGCATAGCATATGAGGTACTTGAGGGCTTACATTACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 90 bp TCTCTGATGATTAAAGGCAGGGTAGCAGCTGCAGACAACTCATTATaGCTGTTTGAATGTGGCAAATTTGACTGGTCATCCTCCAGCAAT +
Preference number: 6 (lower is better)
Translates to: SLMIKGRVAAADNSL*LFECGKFDWSSSSN
Trigger: ATTGCTGGAGGATGACCAGTCAAATTTGCCACATTCAAACAGCAATAATGAGTTGTCTGCAGCTGCTACCCTGCCTTTAATCATCAGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 90 bp TGGATCATGGAAGGCGATCATCTGGGAGAACACGGTCAGGTACTCTaGTATTACATGAGAGTTGTCCTTCAAGAAGAAGTTATACAGGTA +
Preference number: 6 (lower is better)
Translates to: WIMEGDHLGEHGQVL*YYMRVVLQEEVIQV
Trigger: TACCTGTATAACTTCTTCTTGAAGGACAACTCTCATGTAATACAAGAGTACCTGACCGTGTTCTCCCAGATGATCGCCTTCCATGATCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS TCA 72 bp CCAGGTAATCATTGTCTATATCTTTACACAAGTCACTaGTATCCTCAGGCAGAGTTAGATCAGCGCATCTCA +
Preference number: 6 (lower is better)
Translates to: PGNHCLYLYTSH*YPQAELDQRIS
Trigger: TGAGATGCGCTGATCTAACTCTGCCTGAGGATATCAGTGACTTGTGTAAAGATATAGACAATGATTACCTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS TCA 72 bp CTTTTAATCTGTTTCTTAGCTGGCACAAAGACAACGTaGCTGTGGTGTCATCTAAGAGTGAGCTTCTATCTC +
Preference number: 6 (lower is better)
Translates to: LLICFLAGTKTT*LWCHLRVSFYL
Trigger: GAGATAGAAGCTCACTCTTAGATGACACCACAGTCACGTTGTCTTTGTGCCAGCTAAGAAACAGATTAAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS GCA 72 bp TCAAGTAATGTAAGCCCTCAAGTACCTCATATGCTATaGACAGAACTGTTGAATGACTCACAGGCTTCCTTT +
Preference number: 6 (lower is better)
Translates to: SSNVSPQVPHML*TELLNDSQASF
Trigger: AAAGGAAGCCTGTGAGTCATTCAACAGTTCTGTGCATAGCATATGAGGTACTTGAGGGCTTACATTACTTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CAA 72 bp CAGACAACTCATTATTGCTGTTTGAATGTGGCAAATTaGACTGGTCATCCTCCAGCAATGGGTAAAACGCTT +
Preference number: 6 (lower is better)
Translates to: QTTHYCCLNVAN*TGHPPAMGKTL
Trigger: AAGCGTTTTACCCATTGCTGGAGGATGACCAGTCAAATTTGCCACATTCAAACAGCAATAATGAGTTGTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS TCA 72 bp ATCTGGGAGAACACGGTCAGGTACTCTTGTATTACATaGGAGTTGTCCTTCAAGAAGAAGTTATACAGGTAT +
Preference number: 6 (lower is better)
Translates to: IWENTVRYSCIT*ELSFKKKLYRY
Trigger: ATACCTGTATAACTTCTTCTTGAAGGACAACTCTCATGTAATACAAGAGTACCTGACCGTGTTCTCCCAGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5
CDS CCA 72 bp TTCATTAACTCATCTGGGGTTGGCCTCTTAGAAGGATaGAAGGTGAGGCACTTCTTCAAAATATTTATCACA +
Preference number: 6 (lower is better)
Translates to: FINSSGVGLLEG*KVRHFFKIFIT
Trigger: TGTGATAAATATTTTGAAGAAGTGCCTCACCTTCCATCCTTCTAAGAGGCCAACCCCAGATGAGTTAATGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169172.5