RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TBCEL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037287

Ensembl transcript IDs: ENSMUST00000066148.12, ENSMUST00000066179.14, ENSMUST00000125995.8, ENSMUST00000128959.8, ENSMUST00000134374.2, ENSMUST00000138506.8

Found 285 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAACAGGACGAGTGCCAGGTGACGGGAGTGACAGCTGATCTACCCTaGAGGGGCTCCTGGGGCGCAGAGGTGCTGGAGCGGTTAGAATGC +
Preference number: 1 (lower is better)
Translates to: EQDECQVTGVTADLP*RGSWGAEVLERLEC
Trigger: GCATTCTAACCGCTCCAGCACCTCTGCGCCCCAGGAGCCCCTCCAGGGTAGATCAGCTGTCACTCCCGTCACCTGGCACTCGTCCTGTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR GCA 90 bp CTCAGGAGGCCCGGGGCAGCAGCCTTAGAGATGCTGAACCTGAAGTaGGGTGGCAAGAGAGCAAACACCTGCCACATGGCGGAGGAGGGA +
Preference number: 1 (lower is better)
Translates to: LRRPGAAALEMLNLK*GGKRANTCHMAEEG
Trigger: TCCCTCCTCCGCCATGTGGCAGGTGTTTGCTCTCTTGCCACCGCACTTCAGGTTCAGCATCTCTAAGGCTGCTGCCCCGGGCCTCCTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR CCA 90 bp GAGGCCCGGGGCAGCAGCCTTAGAGATGCTGAACCTGAAGTGCGGTaGCAAGAGAGCAAACACCTGCCACATGGCGGAGGAGGGAACTTA +
Preference number: 1 (lower is better)
Translates to: EARGSSLRDAEPEVR*QESKHLPHGGGGNL
Trigger: TAAGTTCCCTCCTCCGCCATGTGGCAGGTGTTTGCTCTCTTGCCACCGCACTTCAGGTTCAGCATCTCTAAGGCTGCTGCCCCGGGCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR GCA 90 bp CGCACAGGTGGAAAGCCTGCAAGCTTTCTCCCCAGTCCCACCACTTaGTTCACACTCCTGGCCAGCTTCTCAGCCCATGTTCTGCTAAGG +
Preference number: 1 (lower is better)
Translates to: RTGGKPASFLPSPTT*FTLLASFSAHVLLR
Trigger: CCTTAGCAGAACATGGGCTGAGAAGCTGGCCAGGAGTGTGAAGCAAGTGGTGGGACTGGGGAGAAAGCTTGCAGGCTTTCCACCTGTGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR GCA 90 bp CCCACAACCGAAAAGACTTTCTGCTTTAGAAAGGCATGTTCTCCCTaGCGTGCCCAAGGCGCGCTCTGTATACCAGCGAGGGCAGCTTTT +
Preference number: 1 (lower is better)
Translates to: PTTEKTFCFRKACSP*RAQGALCIPARAAF
Trigger: AAAAGCTGCCCTCGCTGGTATACAGAGCGCGCCTTGGGCACGGCAGGGAGAACATGCCTTTCTAAAGCAGAAAGTCTTTTCGGTTGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR GCA 90 bp CAACCCAAACTAAGAGATCCCTCTGGAGCACAGCTTCAGCAGCTCTaGCCACAGGAGGACCCTGGGCTTAGGTTTGGCTTTCTCGTGTTA +
Preference number: 1 (lower is better)
Translates to: QPKLRDPSGAQLQQL*PQEDPGLRFGFLVL
Trigger: TAACACGAGAAAGCCAAACCTAAGCCCAGGGTCCTCCTGTGGGCAGAGCTGCTGAAGCTGTGCTCCAGAGGGATCTCTTAGTTTGGGTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR GCA 90 bp AGCATTCTGGAGTCACGCCCTACTTGCCCAGGGCCTAAGCTACAGTaGGGAGGGAGAGCCACACTCACATGTGTTAGGAAAAGCTATTGG +
Preference number: 1 (lower is better)
Translates to: SILESRPTCPGPKLQ*GGRATLTCVRKSYW
Trigger: CCAATAGCTTTTCCTAACACATGTGAGTGTGGCTCTCCCTCCGCACTGTAGCTTAGGCCCTGGGCAAGTAGGGCGTGACTCCAGAATGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR GCA 90 bp TATCGTACATACAAACTACAGAGCATTCTGGAGTCACGCCCTACTTaGCCAGGGCCTAAGCTACAGTGCGGAGGGAGAGCCACACTCACA +
Preference number: 1 (lower is better)
Translates to: YRTYKLQSILESRPT*PGPKLQCGGRATLT
Trigger: TGTGAGTGTGGCTCTCCCTCCGCACTGTAGCTTAGGCCCTGGGCAAGTAGGGCGTGACTCCAGAATGCTCTGTAGTTTGTATGTACGATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR CCA 90 bp CTAAGAACAAGGGGCGTTCAGCTCTGCTGCTGTCTTGTGCATTTATaGCAATGGGCTGCAGACACAGGCAACTGTGGACTCCCCCGATTT +
Preference number: 1 (lower is better)
Translates to: LRTRGVQLCCCLVHL*QWAADTGNCGLPRF
Trigger: AAATCGGGGGAGTCCACAGTTGCCTGTGTCTGCAGCCCATTGCCATAAATGCACAAGACAGCAGCAGAGCTGAACGCCCCTTGTTCTTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR GCA 90 bp ATTTTCACCAGAGGGTCTCTAAGAACAAGGGGCGTTCAGCTCTGCTaGTGTCTTGTGCATTTATGGCAATGGGCTGCAGACACAGGCAAC +
Preference number: 1 (lower is better)
Translates to: IFTRGSLRTRGVQLC*CLVHLWQWAADTGN
Trigger: GTTGCCTGTGTCTGCAGCCCATTGCCATAAATGCACAAGACAGCAGCAGAGCTGAACGCCCCTTGTTCTTAGAGACCCTCTGGTGAAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR GCA 90 bp TTCATTTTCACCAGAGGGTCTCTAAGAACAAGGGGCGTTCAGCTCTaGTGCTGTCTTGTGCATTTATGGCAATGGGCTGCAGACACAGGC +
Preference number: 1 (lower is better)
Translates to: FIFTRGSLRTRGVQL*CCLVHLWQWAADTG
Trigger: GCCTGTGTCTGCAGCCCATTGCCATAAATGCACAAGACAGCAGCAGAGCTGAACGCCCCTTGTTCTTAGAGACCCTCTGGTGAAAATGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR GCA 90 bp CTGTTTCCCAGGCTGACAAAGCAACGTCTCCATTACAGTTTCTCTTaGAAATTCCTCCGCACTCGCACGCACATACACAAAGCAACCAAT +
Preference number: 1 (lower is better)
Translates to: LFPRLTKQRLHYSFS*KFLRTRTHIHKATN
Trigger: ATTGGTTGCTTTGTGTATGTGCGTGCGAGTGCGGAGGAATTTGCAAGAGAAACTGTAATGGAGACGTTGCTTTGTCAGCCTGGGAAACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR TCA 90 bp CACCGATTTTATTTCAAAACCAGCTTCTTTCCTCAGCCACCCAAGTaGATCTGGAAAGACGCATGCGCAAACGGCTTCCTCATTTACTGC +
Preference number: 1 (lower is better)
Translates to: HRFYFKTSFFPQPPK*IWKDACANGFLIYC
Trigger: GCAGTAAATGAGGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGAGGAAAGAAGCTGGTTTTGAAATAAAATCGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR GCA 90 bp TCTGATGAAATCAATGTTACATACAAACAAGCACGACGGATAACATaGAGGCTCAAAGGTCCACGGTCTTTTCTCTCCTCCTTCTGGGTC +
Preference number: 1 (lower is better)
Translates to: SDEINVTYKQARRIT*RLKGPRSFLSSFWV
Trigger: GACCCAGAAGGAGGAGAGAAAAGACCGTGGACCTTTGAGCCTGCATGTTATCCGTCGTGCTTGTTTGTATGTAACATTGATTTCATCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR TCA 90 bp AAAAAGCCTCTCAGAGAACTCTGTCATATAGAAAATATCTCATTGTaGCCAAAGTGTAAGCGCTCACTCTGCCTTCTGCCCTGGGACAAC +
Preference number: 1 (lower is better)
Translates to: KKPLRELCHIENISL*PKCKRSLCLLPWDN
Trigger: GTTGTCCCAGGGCAGAAGGCAGAGTGAGCGCTTACACTTTGGTCACAATGAGATATTTTCTATATGACAGAGTTCTCTGAGAGGCTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR CAA 90 bp CCGCACAGGTGGAAAGCCTGCAAGCTTTCTCCCCAGTCCCACCACTaGCTTCACACTCCTGGCCAGCTTCTCAGCCCATGTTCTGCTAAG +
Preference number: 2 (lower is better)
Translates to: PHRWKACKLSPQSHH*LHTPGQLLSPCSAK
Trigger: CTTAGCAGAACATGGGCTGAGAAGCTGGCCAGGAGTGTGAAGCAAGTGGTGGGACTGGGGAGAAAGCTTGCAGGCTTTCCACCTGTGCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR-3UTR GCA 90 bp GTTGGAACTGCATCTGCTCTTCGTTCCCTCACACAGCTCCTTCTTTTTCTCGGGCAGCTTCAGCAGCTCTaGCCACAGGAGGACCCTGGG +
Preference number: 2 (lower is better)
Translates to: VGTASALRSLTQLLLFLGQLQQL*PQEDPG
Trigger: CCCAGGGTCCTCCTGTGGGCAGAGCTGCTGAAGCTG...CCCGAGAAAAAGAAGGAGCTGTGTGAGGGAACGAAGAGCAGATGCAGTTCCAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR-3UTR GCA 90 bp GTTGGAACTGCATCTGCTCTTCGTTCCCTCACACAGCTCCTTCTTTTTCTCGGGGCTCACTCTGCCTTCTaGCCTGGGACAACAGTGGCT +
Preference number: 2 (lower is better)
Translates to: VGTASALRSLTQLLLFLGAHSAF*PGTTVA
Trigger: AGCCACTGTTGTCCCAGGGCAGAAGGCAGAGTGAGC...CCCGAGAAAAAGAAGGAGCTGTGTGAGGGAACGAAGAGCAGATGCAGTTCCAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR-3UTR CCA 90 bp AAAGCCTGCAAGCTTTCTCCCCAGTCCCACCACTTGCTTCACACTCCTGGCCAGCTCTCACATAAAGACTaGAGATGCAGCCATGTCTGC +
Preference number: 2 (lower is better)
Translates to: KACKLSPQSHHLLHTPGQLSHKD*RCSHVC
Trigger: GCAGACATGGCTGCATCTCCAGTCTTTATGTGAGAG...CTGGCCAGGAGTGTGAAGCAAGTGGTGGGACTGGGGAGAAAGCTTGCAGGCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR-3UTR CCA 90 bp CAGTCCCACCACTTGCTTCACACTCCTGGCCAGCTTCTCAGCCCATGTTCTGCTCTCTCACATAAAGACTaGAGATGCAGCCATGTCTGC +
Preference number: 2 (lower is better)
Translates to: QSHHLLHTPGQLLSPCSALSHKD*RCSHVC
Trigger: GCAGACATGGCTGCATCTCCAGTCTTTATGTGAGAG...AGCAGAACATGGGCTGAGAAGCTGGCCAGGAGTGTGAAGCAAGTGGTGGGACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR-3UTR CCA 90 bp TCAGCCACCCAAGTGAATCTGGAAAGACGCATGCGCAAACGGCTTCCTCATTTAGGTTTCTGTCATCTTTaGGGGGTAGGGGAGAGGGGG +
Preference number: 2 (lower is better)
Translates to: SATQVNLERRMRKRLPHLGFCHL*GVGERG
Trigger: CCCCCTCTCCCCTACCCCCCAAAGATGACAGAAACC...TAAATGAGGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR-3UTR CCA 90 bp TCTTTCCTCAGCCACCCAAGTGAATCTGGAAAGACGCATGCGCAAACGGCTTCCAGGATGCCGCACAGGTaGAAAGCCTGCAAGCTTTCT +
Preference number: 2 (lower is better)
Translates to: SFLSHPSESGKTHAQTASRMPHR*KACKLS
Trigger: AGAAAGCTTGCAGGCTTTCCACCTGTGCGGCATCCT...GGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGAGGAAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR-3UTR TCA 90 bp TCTTTCCTCAGCCACCCAAGTGAATCTGGAAAGACGCATGCGCAAACGGCTTCCAAAGAGCCCAGTGGCTaGCAAATCCCAATGACACAG +
Preference number: 2 (lower is better)
Translates to: SFLSHPSESGKTHAQTASKEPSG*QIPMTQ
Trigger: CTGTGTCATTGGGATTTGTCAGCCACTGGGCTCTTT...GGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGAGGAAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR-3UTR TCA 90 bp CAGTCCCACCACTTGCTTCACACTCCTGGCCAGCTTCTCAGCCCATGTTCTGCTCAGGAAGTCCTTATGTaGGTTTTTACAAGGCTGGTA +
Preference number: 2 (lower is better)
Translates to: QSHHLLHTPGQLLSPCSAQEVLM*VFTRLV
Trigger: TACCAGCCTTGTAAAAACTCACATAAGGACTTCCTG...AGCAGAACATGGGCTGAGAAGCTGGCCAGGAGTGTGAAGCAAGTGGTGGGACTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR-3UTR GCA 90 bp GTTGGAACTGCATCTGCTCTTCGTTCCCTCACACAGCTCCTTCTTTTTCTCGGGGGCGTTCAGCTCTGCTaGTGTCTTGTGCATTTATGG +
Preference number: 2 (lower is better)
Translates to: VGTASALRSLTQLLLFLGGVQLC*CLVHLW
Trigger: CCATAAATGCACAAGACAGCAGCAGAGCTGAACGCC...CCCGAGAAAAAGAAGGAGCTGTGTGAGGGAACGAAGAGCAGATGCAGTTCCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR-3UTR CCA 90 bp TCAGCCACCCAAGTGAATCTGGAAAGACGCATGCGCAAACGGCTTCCTCATTTACCAATGACAATGCTCTaGAAACACCCACGCCGGTTG +
Preference number: 2 (lower is better)
Translates to: SATQVNLERRMRKRLPHLPMTML*KHPRRL
Trigger: CAACCGGCGTGGGTGTTTCCAGAGCATTGTCATTGG...TAAATGAGGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR-3UTR GCA 90 bp GTTGGAACTGCATCTGCTCTTCGTTCCCTCACACAGCTCCTTCTTTTTCTCGGGTCTGCTGCTGTCTTGTaGATTTATGGCAATGGGCTG +
Preference number: 2 (lower is better)
Translates to: VGTASALRSLTQLLLFLGSAAVL*IYGNGL
Trigger: CAGCCCATTGCCATAAATGCACAAGACAGCAGCAGA...CCCGAGAAAAAGAAGGAGCTGTGTGAGGGAACGAAGAGCAGATGCAGTTCCAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR-3UTR CCA 90 bp GTTGGAACTGCATCTGCTCTTCGTTCCCTCACACAGCTCCTTCTTTTTCTCGGGCTCTCACATAAAGACTaGAGATGCAGCCATGTCTGC +
Preference number: 2 (lower is better)
Translates to: VGTASALRSLTQLLLFLGLSHKD*RCSHVC
Trigger: GCAGACATGGCTGCATCTCCAGTCTTTATGTGAGAG...CCCGAGAAAAAGAAGGAGCTGTGTGAGGGAACGAAGAGCAGATGCAGTTCCAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR-3UTR CCA 90 bp CCCGATTTAAAACAATCCAGGGTATCTCAACAACCCAAACTAAGAGATCCCTCTCCCAGGACCCCCAAATaGAAAGGAGGAGGAGGAGGG +
Preference number: 2 (lower is better)
Translates to: PDLKQSRVSQQPKLRDPSPRTPK*KGGGGG
Trigger: CCCTCCTCCTCCTCCTTTCCATTTGGGGGTCCTGGG...AGAGGGATCTCTTAGTTTGGGTTGTTGAGATACCCTGGATTGTTTTAAATCGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR-3UTR TCA 90 bp TCCTTTCCTTCCCCACAACCGAAAAGACTTTCTGCTTTAGAAAGGCATGTTCTCCCCCATCTCTGGATGTaGACACTGCATCACCCCTCT +
Preference number: 2 (lower is better)
Translates to: SFPSPQPKRLSALERHVLPHLWM*TLHHPS
Trigger: AGAGGGGTGATGCAGTGTTCACATCCAGAGATGGGG...GAGAACATGCCTTTCTAAAGCAGAAAGTCTTTTCGGTTGTGGGGAAGGAAAGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR CAA 90 bp ACTGTTTCCCAGGCTGACAAAGCAACGTCTCCATTACAGTTTCTCTaGCAAATTCCTCCGCACTCGCACGCACATACACAAAGCAACCAA +
Preference number: 2 (lower is better)
Translates to: TVSQADKATSPLQFL*QIPPHSHAHTQSNQ
Trigger: TTGGTTGCTTTGTGTATGTGCGTGCGAGTGCGGAGGAATTTGCAAGAGAAACTGTAATGGAGACGTTGCTTTGTCAGCCTGGGAAACAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR-3UTR GCA 90 bp TCCTTTCCTTCCCCACAACCGAAAAGACTTTCTGCTTTAGAAAGGCATGTTCTCTCTGGATGTGAACACTaGATCACCCCTCTGAGGGAC +
Preference number: 2 (lower is better)
Translates to: SFPSPQPKRLSALERHVLSGCEH*ITPLRD
Trigger: GTCCCTCAGAGGGGTGATGCAGTGTTCACATCCAGA...GAGAACATGCCTTTCTAAAGCAGAAAGTCTTTTCGGTTGTGGGGAAGGAAAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR-3UTR TCA 90 bp TGGCTCCAAAGTTCAAAAATAAGAGTGCAACTGTTTCCCAGGCTGACAAAGCAAGGGTACAAGTCAGAATaGAAACCAGACCCAGGACCC +
Preference number: 2 (lower is better)
Translates to: WLQSSKIRVQLFPRLTKQGYKSE*KPDPGP
Trigger: GGGTCCTGGGTCTGGTTTTCATTCTGACTTGTACCC...TTGCTTTGTCAGCCTGGGAAACAGTTGCACTCTTATTTTTGAACTTTGGAGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR-3UTR GCA 90 bp TGGCTCCAAAGTTCAAAAATAAGAGTGCAACTGTTTCCCAGGCTGACAAAGCAATCTGGATGTGAACACTaGATCACCCCTCTGAGGGAC +
Preference number: 2 (lower is better)
Translates to: WLQSSKIRVQLFPRLTKQSGCEH*ITPLRD
Trigger: GTCCCTCAGAGGGGTGATGCAGTGTTCACATCCAGA...TTGCTTTGTCAGCCTGGGAAACAGTTGCACTCTTATTTTTGAACTTTGGAGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR-3UTR CCA 90 bp CCCGATTTAAAACAATCCAGGGTATCTCAACAACCCAAACTAAGAGATCCCTCTCCAATGACAATGCTCTaGAAACACCCACGCCGGTTG +
Preference number: 2 (lower is better)
Translates to: PDLKQSRVSQQPKLRDPSPMTML*KHPRRL
Trigger: CAACCGGCGTGGGTGTTTCCAGAGCATTGTCATTGG...AGAGGGATCTCTTAGTTTGGGTTGTTGAGATACCCTGGATTGTTTTAAATCGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR-3UTR GCA 90 bp CCCGATTTAAAACAATCCAGGGTATCTCAACAACCCAAACTAAGAGATCCCTCTATGCTGAACCTGAAGTaGGGTGGCAAGAGAGCAAAC +
Preference number: 2 (lower is better)
Translates to: PDLKQSRVSQQPKLRDPSMLNLK*GGKRAN
Trigger: GTTTGCTCTCTTGCCACCGCACTTCAGGTTCAGCAT...AGAGGGATCTCTTAGTTTGGGTTGTTGAGATACCCTGGATTGTTTTAAATCGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR-3UTR CCA 90 bp TCCTTTCCTTCCCCACAACCGAAAAGACTTTCTGCTTTAGAAAGGCATGTTCTCACAGTAAGAAGCCGGTaGTTTCTGTCATCTTTGGGG +
Preference number: 2 (lower is better)
Translates to: SFPSPQPKRLSALERHVLTVRSR*FLSSLG
Trigger: CCCCAAAGATGACAGAAACCACCGGCTTCTTACTGT...GAGAACATGCCTTTCTAAAGCAGAAAGTCTTTTCGGTTGTGGGGAAGGAAAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR-3UTR CCA 90 bp AGAACAGAACTAAATAGAAACAGCAAGGAAACCATCCAGATTAACAAAGAATGGCCCAGGACCCCCAAATaGAAAGGAGGAGGAGGAGGG +
Preference number: 2 (lower is better)
Translates to: RTELNRNSKETIQINKEWPRTPK*KGGGGG
Trigger: CCCTCCTCCTCCTCCTTTCCATTTGGGGGTCCTGGG...CCATTCTTTGTTAATCTGGATGGTTTCCTTGCTGTTTCTATTTAGTTCTGTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR-3UTR CCA 90 bp AAATGTCTACACAGCACCGATTTTATTTCAAAACCAGCTTCTTTCCTCAGCCACAGGATGCCGCACAGGTaGAAAGCCTGCAAGCTTTCT +
Preference number: 2 (lower is better)
Translates to: KCLHSTDFISKPASFLSHRMPHR*KACKLS
Trigger: AGAAAGCTTGCAGGCTTTCCACCTGTGCGGCATCCT...GTGGCTGAGGAAAGAAGCTGGTTTTGAAATAAAATCGGTGCTGTGTAGACATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR-3UTR GCA 90 bp ACATGCAGGCTCAAAGGTCCACGGTCTTTTCTCTCCTCCTTCTGGGTCTGTTATATTTCCAATAGCTTATaGGATAAAGCTGTCAGGAAG +
Preference number: 2 (lower is better)
Translates to: TCRLKGPRSFLSSFWVCYISNSL*DKAVRK
Trigger: CTTCCTGACAGCTTTATCGCATAAGCTATTGGAAAT...ATAACAGACCCAGAAGGAGGAGAGAAAAGACCGTGGACCTTTGAGCCTGCATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR-3UTR CCA 90 bp AGAACAGAACTAAATAGAAACAGCAAGGAAACCATCCAGATTAACAAAGAATGGGGTTTCTGTCATCTTTaGGGGGTAGGGGAGAGGGGG +
Preference number: 2 (lower is better)
Translates to: RTELNRNSKETIQINKEWGFCHL*GVGERG
Trigger: CCCCCTCTCCCCTACCCCCCAAAGATGACAGAAACC...CCATTCTTTGTTAATCTGGATGGTTTCCTTGCTGTTTCTATTTAGTTCTGTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR-3UTR CCA 90 bp AACTGTGGACTCCCCCGATTTAAAACAATCCAGGGTATCTCAACAACCCAAACTGCCCTGGGACAACAGTaGCTCCAAAGTTCAAAAATA +
Preference number: 2 (lower is better)
Translates to: NCGLPRFKTIQGISTTQTALGQQ*LQSSKI
Trigger: TATTTTTGAACTTTGGAGCCACTGTTGTCCCAGGGC...AGTTTGGGTTGTTGAGATACCCTGGATTGTTTTAAATCGGGGGAGTCCACAGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR-3UTR GCA 90 bp AAATGTCTACACAGCACCGATTTTATTTCAAAACCAGCTTCTTTCCTCAGCCACAGAGGGAGACAGGCATaGTCTCACATAAAGACTGGA +
Preference number: 2 (lower is better)
Translates to: KCLHSTDFISKPASFLSHRGRQA*SHIKTG
Trigger: TCCAGTCTTTATGTGAGAGCATGCCTGTCTCCCTCT...GTGGCTGAGGAAAGAAGCTGGTTTTGAAATAAAATCGGTGCTGTGTAGACATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR-3UTR GCA 90 bp AGAACAGAACTAAATAGAAACAGCAAGGAAACCATCCAGATTAACAAAGAATGGCACAGGTGGAAAGCCTaGAAGCTTTCTCCCCAGTCC +
Preference number: 2 (lower is better)
Translates to: RTELNRNSKETIQINKEWHRWKA*KLSPQS
Trigger: GGACTGGGGAGAAAGCTTGCAGGCTTTCCACCTGTG...CCATTCTTTGTTAATCTGGATGGTTTCCTTGCTGTTTCTATTTAGTTCTGTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR-3UTR TCA 90 bp AGAACAGAACTAAATAGAAACAGCAAGGAAACCATCCAGATTAACAAAGAATGGCAGGAAGTCCTTATGTaGGTTTTTACAAGGCTGGTA +
Preference number: 2 (lower is better)
Translates to: RTELNRNSKETIQINKEWQEVLM*VFTRLV
Trigger: TACCAGCCTTGTAAAAACTCACATAAGGACTTCCTG...CCATTCTTTGTTAATCTGGATGGTTTCCTTGCTGTTTCTATTTAGTTCTGTTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR TCA 72 bp AGAACAGGACGAGTGCCAGGTGACGGGAGTGACAGCTaGTCTACCCTGGAGGGGCTCCTGGGGCGCAGAGGT +
Preference number: 3 (lower is better)
Translates to: RTGRVPGDGSDS*STLEGLLGRRG
Trigger: ACCTCTGCGCCCCAGGAGCCCCTCCAGGGTAGATCAGCTGTCACTCCCGTCACCTGGCACTCGTCCTGTTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR GCA 72 bp GGGAGGAGGAGGGGGAGGGAGAGAGGGAGACAGGCATaGTCTCACATAAAGACTGGAGATGCAGCCATGTCT +
Preference number: 3 (lower is better)
Translates to: GRRRGRERGRQA*SHIKTGDAAMS
Trigger: AGACATGGCTGCATCTCCAGTCTTTATGTGAGAGCATGCCTGTCTCCCTCTCTCCCTCCCCCTCCTCCTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR GCA 72 bp AGCTATTGGTGGCAAGGCTCCCGTGGTGACCAATACTaGACAACCAAGTGTTCTCTGCTCCCAGCAGGGCCG +
Preference number: 3 (lower is better)
Translates to: SYWWQGSRGDQY*TTKCSLLPAGP
Trigger: CGGCCCTGCTGGGAGCAGAGAACACTTGGTTGTGCAGTATTGGTCACCACGGGAGCCTTGCCACCAATAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR CCA 72 bp GGCAGCAGCCTTAGAGATGCTGAACCTGAAGTGCGGTaGCAAGAGAGCAAACACCTGCCACATGGCGGAGGA +
Preference number: 3 (lower is better)
Translates to: GSSLRDAEPEVR*QESKHLPHGGG
Trigger: TCCTCCGCCATGTGGCAGGTGTTTGCTCTCTTGCCACCGCACTTCAGGTTCAGCATCTCTAAGGCTGCTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR GCA 72 bp GAGTCACGCCCTACTTGCCCAGGGCCTAAGCTACAGTaGGGAGGGAGAGCCACACTCACATGTGTTAGGAAA +
Preference number: 3 (lower is better)
Translates to: ESRPTCPGPKLQ*GGRATLTCVRK
Trigger: TTTCCTAACACATGTGAGTGTGGCTCTCCCTCCGCACTGTAGCTTAGGCCCTGGGCAAGTAGGGCGTGACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR GCA 72 bp TACAAACTACAGAGCATTCTGGAGTCACGCCCTACTTaGCCAGGGCCTAAGCTACAGTGCGGAGGGAGAGCC +
Preference number: 3 (lower is better)
Translates to: YKLQSILESRPT*PGPKLQCGGRA
Trigger: GGCTCTCCCTCCGCACTGTAGCTTAGGCCCTGGGCAAGTAGGGCGTGACTCCAGAATGCTCTGTAGTTTGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR CCA 72 bp GTTCAGCTCTGCTGCTGTCTTGTGCATTTATGGCAATaGGCTGCAGACACAGGCAACTGTGGACTCCCCCGA +
Preference number: 3 (lower is better)
Translates to: VQLCCCLVHLWQ*AADTGNCGLPR
Trigger: TCGGGGGAGTCCACAGTTGCCTGTGTCTGCAGCCCATTGCCATAAATGCACAAGACAGCAGCAGAGCTGAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR-3UTR CAA 90 bp GTTGGAACTGCATCTGCTCTTCGTTCCCTCACACAGCTCCTTCTTTTTCTCGGGCCCACGCCGGTTGGGTaGGATGAGACTCCTTTTCCA +
Preference number: 3 (lower is better)
Translates to: VGTASALRSLTQLLLFLGPTPVG*DETPFP
Trigger: TGGAAAAGGAGTCTCATCCAACCCAACCGGCGTGGG...CCCGAGAAAAAGAAGGAGCTGTGTGAGGGAACGAAGAGCAGATGCAGTTCCAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR GCA 72 bp GAAAAGACTTTCTGCTTTAGAAAGGCATGTTCTCCCTaGCGTGCCCAAGGCGCGCTCTGTATACCAGCGAGG +
Preference number: 3 (lower is better)
Translates to: EKTFCFRKACSP*RAQGALCIPAR
Trigger: CCTCGCTGGTATACAGAGCGCGCCTTGGGCACGGCAGGGAGAACATGCCTTTCTAAAGCAGAAAGTCTTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR GCA 72 bp ACCAGAGGGTCTCTAAGAACAAGGGGCGTTCAGCTCTaGTGCTGTCTTGTGCATTTATGGCAATGGGCTGCA +
Preference number: 3 (lower is better)
Translates to: TRGSLRTRGVQL*CCLVHLWQWAA
Trigger: TGCAGCCCATTGCCATAAATGCACAAGACAGCAGCAGAGCTGAACGCCCCTTGTTCTTAGAGACCCTCTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR GCA 72 bp CATTGTGACCAAAGTGTAAGCGCTCACTCTGCCTTCTaGCCTGGGACAACAGTGGCTCCAAAGTTCAAAAAT +
Preference number: 3 (lower is better)
Translates to: HCDQSVSAHSAF*PGTTVAPKFKN
Trigger: ATTTTTGAACTTTGGAGCCACTGTTGTCCCAGGGCAGAAGGCAGAGTGAGCGCTTACACTTTGGTCACAATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR-3UTR CAA 90 bp TCTTTCCTCAGCCACCCAAGTGAATCTGGAAAGACGCATGCGCAAACGGCTTCCACAAAACAAAAAGAGTaGTTCAGACGCATCATCACA +
Preference number: 3 (lower is better)
Translates to: SFLSHPSESGKTHAQTASTKQKE*FRRIIT
Trigger: TGTGATGATGCGTCTGAACAACTCTTTTTGTTTTGT...GGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGAGGAAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR-3UTR CAA 90 bp CCCGATTTAAAACAATCCAGGGTATCTCAACAACCCAAACTAAGAGATCCCTCTACCCTGGGCTTAGGTTaGGCTTTCTCGTGTTACTCC +
Preference number: 3 (lower is better)
Translates to: PDLKQSRVSQQPKLRDPSTLGLG*AFSCYS
Trigger: GGAGTAACACGAGAAAGCCAAACCTAAGCCCAGGGT...AGAGGGATCTCTTAGTTTGGGTTGTTGAGATACCCTGGATTGTTTTAAATCGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR GCA 72 bp AGGCTGACAAAGCAACGTCTCCATTACAGTTTCTCTTaGAAATTCCTCCGCACTCGCACGCACATACACAAA +
Preference number: 3 (lower is better)
Translates to: RLTKQRLHYSFS*KFLRTRTHIHK
Trigger: TTTGTGTATGTGCGTGCGAGTGCGGAGGAATTTGCAAGAGAAACTGTAATGGAGACGTTGCTTTGTCAGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR CCA 72 bp ACAGAAATTATCGTACATACAAACTACAGAGCATTCTaGAGTCACGCCCTACTTGCCCAGGGCCTAAGCTAC +
Preference number: 3 (lower is better)
Translates to: TEIIVHTNYRAF*SHALLAQGLSY
Trigger: GTAGCTTAGGCCCTGGGCAAGTAGGGCGTGACTCCAGAATGCTCTGTAGTTTGTATGTACGATAATTTCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR TCA 72 bp AATTGGAAAAGATTCGGCAATTATTCAAACCGCCAATaGCAATGCTCTGGAAACACCCACGCCGGTTGGGTT +
Preference number: 3 (lower is better)
Translates to: NWKRFGNYSNRQ*QCSGNTHAGWV
Trigger: AACCCAACCGGCGTGGGTGTTTCCAGAGCATTGTCATTGGCGGTTTGAATAATTGCCGAATCTTTTCCAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR GCA 72 bp ATCAATGTTACATACAAACAAGCACGACGGATAACATaGAGGCTCAAAGGTCCACGGTCTTTTCTCTCCTCC +
Preference number: 3 (lower is better)
Translates to: INVTYKQARRIT*RLKGPRSFLSS
Trigger: GGAGGAGAGAAAAGACCGTGGACCTTTGAGCCTGCATGTTATCCGTCGTGCTTGTTTGTATGTAACATTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR TCA 72 bp CTCAGAGAACTCTGTCATATAGAAAATATCTCATTGTaGCCAAAGTGTAAGCGCTCACTCTGCCTTCTGCCC +
Preference number: 3 (lower is better)
Translates to: LRELCHIENISL*PKCKRSLCLLP
Trigger: GGGCAGAAGGCAGAGTGAGCGCTTACACTTTGGTCACAATGAGATATTTTCTATATGACAGAGTTCTCTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR-3UTR CAA 90 bp AACTGTGGACTCCCCCGATTTAAAACAATCCAGGGTATCTCAACAACCCAAACTGTCAAGAAAATGCAATaGCAAAATAACTGTCCTCGT +
Preference number: 3 (lower is better)
Translates to: NCGLPRFKTIQGISTTQTVKKMQ*QNNCPR
Trigger: ACGAGGACAGTTATTTTGCAATTGCATTTTCTTGAC...AGTTTGGGTTGTTGAGATACCCTGGATTGTTTTAAATCGGGGGAGTCCACAGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR-3UTR CAA 90 bp TGGCTCCAAAGTTCAAAAATAAGAGTGCAACTGTTTCCCAGGCTGACAAAGCAAGTCAAGAAAATGCAATaGCAAAATAACTGTCCTCGT +
Preference number: 3 (lower is better)
Translates to: WLQSSKIRVQLFPRLTKQVKKMQ*QNNCPR
Trigger: ACGAGGACAGTTATTTTGCAATTGCATTTTCTTGAC...TTGCTTTGTCAGCCTGGGAAACAGTTGCACTCTTATTTTTGAACTTTGGAGCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp GGTGGAAAGCCTGCAAGCTTTCTCCCCAGTCCCACCACTTGCTTCACACTCCTGGGAGTGGCTGGGACATaGACTCCCACCCCAGGGCCA +
Preference number: 4 (lower is better)
Translates to: GGKPASFLPSPTTCFTLLGVAGT*TPTPGP
Trigger: TGGCCCTGGGGTGGGAGTCCATGTCCCAGCCACTCC...CAGGAGTGTGAAGCAAGTGGTGGGACTGGGGAGAAAGCTTGCAGGCTTTCCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp AGGGAGAGAGGGAGACAGGCATGCTCTCACATAAAGACTGGAGATGCAGCCATGGGAGTGGCTGGGACATaGACTCCCACCCCAGGGCCA +
Preference number: 4 (lower is better)
Translates to: RERGRQACSHIKTGDAAMGVAGT*TPTPGP
Trigger: TGGCCCTGGGGTGGGAGTCCATGTCCCAGCCACTCC...CATGGCTGCATCTCCAGTCTTTATGTGAGAGCATGCCTGTCTCCCTCTCTCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp GGTGGAAAGCCTGCAAGCTTTCTCCCCAGTCCCACCACTTGCTTCACACTCCTGAGAGAAGCATGCTGCTaGTGGGCAACTGCACCAGGG +
Preference number: 4 (lower is better)
Translates to: GGKPASFLPSPTTCFTLLREACC*WATAPG
Trigger: CCCTGGTGCAGTTGCCCACCAGCAGCATGCTTCTCT...CAGGAGTGTGAAGCAAGTGGTGGGACTGGGGAGAAAGCTTGCAGGCTTTCCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp TCTTTCCTCAGCCACCCAAGTGAATCTGGAAAGACGCATGCGCAAACGGCTTCCTTCATAGGCGAGCCCTaGGGAGTGGCTGGGACATGG +
Preference number: 4 (lower is better)
Translates to: SFLSHPSESGKTHAQTASFIGEP*GVAGTW
Trigger: CCATGTCCCAGCCACTCCCCAGGGCTCGCCTATGAA...GGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGAGGAAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
3UTR CAA 72 bp TGGAAAGCCTGCAAGCTTTCTCCCCAGTCCCACCACTaGCTTCACACTCCTGGCCAGCTTCTCAGCCCATGT +
Preference number: 4 (lower is better)
Translates to: WKACKLSPQSHH*LHTPGQLLSPC
Trigger: ACATGGGCTGAGAAGCTGGCCAGGAGTGTGAAGCAAGTGGTGGGACTGGGGAGAAAGCTTGCAGGCTTTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp AAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTGCCCTGGGGAGTGGCTaGGACATGGACTCCCACCCC +
Preference number: 4 (lower is better)
Translates to: KVLPPKEKHAGNKHPAGSALGSG*DMDSHP
Trigger: GGGGTGGGAGTCCATGTCCCAGCCACTCCCCAGGGC...ACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp CCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGGCGAGCCCTGGGGAGTaGCTGGGACATGGACTCCCA +
Preference number: 4 (lower is better)
Translates to: PPKEKHAGNKHPAGSPYVASPGE*LGHGLP
Trigger: TGGGAGTCCATGTCCCAGCCACTCCCCAGGGCTCGC...CACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
3UTR CAA 72 bp AGCAGCTCTGCCCACAGGAGGACCCTGGGCTTAGGTTaGGCTTTCTCGTGTTACTCCTTTCCTTCCCCACAA +
Preference number: 4 (lower is better)
Translates to: SSSAHRRTLGLG*AFSCYSFPSPQ
Trigger: TTGTGGGGAAGGAAAGGAGTAACACGAGAAAGCCAAACCTAAGCCCAGGGTCCTCCTGTGGGCAGAGCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR TCA 90 bp CAGTCCCACCACTTGCTTCACACTCCTGGCCAGCTTCTCAGCCCATGTTCTGCTTCGATTGCATTCAAGTaGTTGTTGGCCAGGACCAGG +
Preference number: 4 (lower is better)
Translates to: QSHHLLHTPGQLLSPCSASIAFK*LLARTR
Trigger: CCTGGTCCTGGCCAACAATCACTTGAATGCAATCGA...AGCAGAACATGGGCTGAGAAGCTGGCCAGGAGTGTGAAGCAAGTGGTGGGACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR TCA 90 bp AAAGCCTGCAAGCTTTCTCCCCAGTCCCACCACTTGCTTCACACTCCTGGCCAGTCACAACACTGCCATTaGGTTTGGAAACGGAGGGCA +
Preference number: 4 (lower is better)
Translates to: KACKLSPQSHHLLHTPGQSQHCH*VWKRRA
Trigger: TGCCCTCCGTTTCCAAACTCAATGGCAGTGTTGTGA...CTGGCCAGGAGTGTGAAGCAAGTGGTGGGACTGGGGAGAAAGCTTGCAGGCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp GAAAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGGAGTGGCTGGGACATaGACTCCCACCCCAGGGCCA +
Preference number: 4 (lower is better)
Translates to: EKSFLLKKSTLETNTLQEGVAGT*TPTPGP
Trigger: TGGCCCTGGGGTGGGAGTCCATGTCCCAGCCACTCC...TTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp CCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTGCGAGCCCTGGGGAGTaGCTGGGACATGGACTCCCA +
Preference number: 4 (lower is better)
Translates to: PKEKHAGNKHPAGSPYVSASPGE*LGHGLP
Trigger: TGGGAGTCCATGTCCCAGCCACTCCCCAGGGCTCGC...ACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp CACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACAAGGCTGCGAGCCCTGGGGAGTaGCTGGGACATGGACTCCCA +
Preference number: 4 (lower is better)
Translates to: HAGNKHPAGSPYVSFYKAASPGE*LGHGLP
Trigger: TGGGAGTCCATGTCCCAGCCACTCCCCAGGGCTCGC...AGCCTTGTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp GGTGGAAAGCCTGCAAGCTTTCTCCCCAGTCCCACCACTTGCTTCACACTCCTGACTTTCGCACTGCTCTaGGGTCTTAGGTCCACTTCT +
Preference number: 4 (lower is better)
Translates to: GGKPASFLPSPTTCFTLLTFALL*GLRSTS
Trigger: AGAAGTGGACCTAAGACCCCAGAGCAGTGCGAAAGT...CAGGAGTGTGAAGCAAGTGGTGGGACTGGGGAGAAAGCTTGCAGGCTTTCCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp GTTGGAACTGCATCTGCTCTTCGTTCCCTCACACAGCTCCTTCTTTTTCTCGGGGAAGCATGCTGCTGGTaGGCAACTGCACCAGGGTCT +
Preference number: 4 (lower is better)
Translates to: VGTASALRSLTQLLLFLGEACCW*ATAPGS
Trigger: AGACCCTGGTGCAGTTGCCCACCAGCAGCATGCTTC...CCCGAGAAAAAGAAGGAGCTGTGTGAGGGAACGAAGAGCAGATGCAGTTCCAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
3UTR CAA 72 bp GTGTTCTCTGCTCCCAGCAGGGCCGGTAGGGTGACATaGCTGAAAATCCCAGTTGGAACTGCATCTGCTCTT +
Preference number: 4 (lower is better)
Translates to: VFSAPSRAGRVT*LKIPVGTASAL
Trigger: AAGAGCAGATGCAGTTCCAACTGGGATTTTCAGCAATGTCACCCTACCGGCCCTGCTGGGAGCAGAGAACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR TCA 90 bp GGTGGAAAGCCTGCAAGCTTTCTCCCCAGTCCCACCACTTGCTTCACACTCCTGATGCTTTGCTGTTGTTaGGGACAAGTTTGCGAACCC +
Preference number: 4 (lower is better)
Translates to: GGKPASFLPSPTTCFTLLMLCCC*GQVCEP
Trigger: GGGTTCGCAAACTTGTCCTCAACAACAGCAAAGCAT...CAGGAGTGTGAAGCAAGTGGTGGGACTGGGGAGAAAGCTTGCAGGCTTTCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR TCA 90 bp GTTGGAACTGCATCTGCTCTTCGTTCCCTCACACAGCTCCTTCTTTTTCTCGGGCCAGGACTGCAAACCTaGCTTGTGGAGGCTGATGGA +
Preference number: 4 (lower is better)
Translates to: VGTASALRSLTQLLLFLGPGLQT*LVEADG
Trigger: TCCATCAGCCTCCACAAGTCAGGTTTGCAGTCCTGG...CCCGAGAAAAAGAAGGAGCTGTGTGAGGGAACGAAGAGCAGATGCAGTTCCAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR GCA 90 bp AGGGAGAGAGGGAGACAGGCATGCTCTCACATAAAGACTGGAGATGCAGCCATGCCACCACCAATTTCCTaGGTTCCTCGGTGGTATACG +
Preference number: 4 (lower is better)
Translates to: RERGRQACSHIKTGDAAMPPPIS*VPRWYT
Trigger: CGTATACCACCGAGGAACGCAGGAAATTGGTGGTGG...CATGGCTGCATCTCCAGTCTTTATGTGAGAGCATGCCTGTCTCCCTCTCTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR GCA 90 bp GTTGGAACTGCATCTGCTCTTCGTTCCCTCACACAGCTCCTTCTTTTTCTCGGGGCCAAAGGAGTGCAGTaGCCGGGAGCTGTACTTCAT +
Preference number: 4 (lower is better)
Translates to: VGTASALRSLTQLLLFLGAKGVQ*PGAVLH
Trigger: ATGAAGTACAGCTCCCGGGCACTGCACTCCTTTGGC...CCCGAGAAAAAGAAGGAGCTGTGTGAGGGAACGAAGAGCAGATGCAGTTCCAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp AGAGTAAAACTACCAGGTAAGTGGGTACAAGTCAGAATGAAAACCAGACCCAGGGCGAGCCCTGGGGAGTaGCTGGGACATGGACTCCCA +
Preference number: 4 (lower is better)
Translates to: RVKLPGKWVQVRMKTRPRASPGE*LGHGLP
Trigger: TGGGAGTCCATGTCCCAGCCACTCCCCAGGGCTCGC...CCTGGGTCTGGTTTTCATTCTGACTTGTACCCACTTACCTGGTAGTTTTACTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp CCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGTTCATAGGCGAGCCCTaGGGAGTGGCTGGGACATGG +
Preference number: 4 (lower is better)
Translates to: PPKEKHAGNKHPAGSPYVFIGEP*GVAGTW
Trigger: CCATGTCCCAGCCACTCCCCAGGGCTCGCCTATGAA...CACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp AGGGAGAGAGGGAGACAGGCATGCTCTCACATAAAGACTGGAGATGCAGCCATGGAGCTCCTCCAACTCTaGCAACTCCTGCAGTATGGT +
Preference number: 4 (lower is better)
Translates to: RERGRQACSHIKTGDAAMELLQL*QLLQYG
Trigger: ACCATACTGCAGGAGTTGCCAGAGTTGGAGGAGCTC...CATGGCTGCATCTCCAGTCTTTATGTGAGAGCATGCCTGTCTCCCTCTCTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp AGGGAGAGAGGGAGACAGGCATGCTCTCACATAAAGACTGGAGATGCAGCCATGTGCAAACCTGACTTGTaGAGGCTGATGGACCGCAGA +
Preference number: 4 (lower is better)
Translates to: RERGRQACSHIKTGDAAMCKPDL*RLMDRR
Trigger: TCTGCGGTCCATCAGCCTCCACAAGTCAGGTTTGCA...CATGGCTGCATCTCCAGTCTTTATGTGAGAGCATGCCTGTCTCCCTCTCTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp TCAGCCACCCAAGTGAATCTGGAAAGACGCATGCGCAAACGGCTTCCTCATTTAAGAGAAGCATGCTGCTaGTGGGCAACTGCACCAGGG +
Preference number: 4 (lower is better)
Translates to: SATQVNLERRMRKRLPHLREACC*WATAPG
Trigger: CCCTGGTGCAGTTGCCCACCAGCAGCATGCTTCTCT...TAAATGAGGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR TCA 90 bp CAGTCCCACCACTTGCTTCACACTCCTGGCCAGCTTCTCAGCCCATGTTCTGCTCAGCTGAGGAACATTTaGCACAATCTTACTGACCTC +
Preference number: 4 (lower is better)
Translates to: QSHHLLHTPGQLLSPCSAQLRNI*HNLTDL
Trigger: GAGGTCAGTAAGATTGTGTCAAATGTTCCTCAGCTG...AGCAGAACATGGGCTGAGAAGCTGGCCAGGAGTGTGAAGCAAGTGGTGGGACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR TCA 90 bp TCTTTCCTCAGCCACCCAAGTGAATCTGGAAAGACGCATGCGCAAACGGCTTCCAGGAGCTTGAGGGAATaGCAGCAGACAGAAGGACAA +
Preference number: 4 (lower is better)
Translates to: SFLSHPSESGKTHAQTASRSLRE*QQTEGQ
Trigger: TTGTCCTTCTGTCTGCTGTCATTCCCTCAAGCTCCT...GGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGAGGAAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR GCA 90 bp TCTTTCCTCAGCCACCCAAGTGAATCTGGAAAGACGCATGCGCAAACGGCTTCCATGTCTTCCCAGGACTaGAAACCTGACTTGTGGAGG +
Preference number: 4 (lower is better)
Translates to: SFLSHPSESGKTHAQTASMSSQD*KPDLWR
Trigger: CCTCCACAAGTCAGGTTTGCAGTCCTGGGAAGACAT...GGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGAGGAAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR GCA 90 bp GTTGGAACTGCATCTGCTCTTCGTTCCCTCACACAGCTCCTTCTTTTTCTCGGGCCACCACCAATTTCCTaGGTTCCTCGGTGGTATACG +
Preference number: 4 (lower is better)
Translates to: VGTASALRSLTQLLLFLGPPPIS*VPRWYT
Trigger: CGTATACCACCGAGGAACGCAGGAAATTGGTGGTGG...CCCGAGAAAAAGAAGGAGCTGTGTGAGGGAACGAAGAGCAGATGCAGTTCCAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR GCA 90 bp TCTTTCCTCAGCCACCCAAGTGAATCTGGAAAGACGCATGCGCAAACGGCTTCCCTTCTACTTTCGCACTaGTCTGGGGTCTTAGGTCCA +
Preference number: 4 (lower is better)
Translates to: SFLSHPSESGKTHAQTASLLLSH*SGVLGP
Trigger: TGGACCTAAGACCCCAGAGCAGTGCGAAAGTAGAAG...GGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGAGGAAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp AAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTGGAGTGGCTGGGACATaGACTCCCACCCCAGGGCCA +
Preference number: 4 (lower is better)
Translates to: KEKHAGNKHPAGSPYVSFGVAGT*TPTPGP
Trigger: TGGCCCTGGGGTGGGAGTCCATGTCCCAGCCACTCC...AAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp CAGTCCCACCACTTGCTTCACACTCCTGGCCAGCTTCTCAGCCCATGTTCTGCTACCTCATGCCAGTCTTaGAGCTTGTTGTCAGAAAGA +
Preference number: 4 (lower is better)
Translates to: QSHHLLHTPGQLLSPCSATSCQS*SLLSER
Trigger: TCTTTCTGACAACAAGCTCCAAGACTGGCATGAGGT...AGCAGAACATGGGCTGAGAAGCTGGCCAGGAGTGTGAAGCAAGTGGTGGGACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR GCA 90 bp TCTTTCCTCAGCCACCCAAGTGAATCTGGAAAGACGCATGCGCAAACGGCTTCCTCCTGCAGTATGGTGTaGACTGTTTCCCATGATGCT +
Preference number: 4 (lower is better)
Translates to: SFLSHPSESGKTHAQTASSCSMV*TVSHDA
Trigger: AGCATCATGGGAAACAGTGCACACCATACTGCAGGA...GGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGAGGAAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR GCA 90 bp CCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGGCCAAAGGAGTGCAGTaGCCGGGAGCTGTACTTCAT +
Preference number: 4 (lower is better)
Translates to: PPKEKHAGNKHPAGSPYVAKGVQ*PGAVLH
Trigger: ATGAAGTACAGCTCCCGGGCACTGCACTCCTTTGGC...CACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR GCA 90 bp CCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGCTAATGCCAAAGGAGTaGAGTGCCCGGGAGCTGTAC +
Preference number: 4 (lower is better)
Translates to: PPKEKHAGNKHPAGSPYVLMPKE*SARELY
Trigger: GTACAGCTCCCGGGCACTGCACTCCTTTGGCATTAG...CACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp GAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACTTCATAGGCGAGCCCTaGGGAGTGGCTGGGACATGG +
Preference number: 4 (lower is better)
Translates to: EKHAGNKHPAGSPYVSFYFIGEP*GVAGTW
Trigger: CCATGTCCCAGCCACTCCCCAGGGCTCGCCTATGAA...GTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp TCAGCCACCCAAGTGAATCTGGAAAGACGCATGCGCAAACGGCTTCCTCATTTATGCAAACCTGACTTGTaGAGGCTGATGGACCGCAGA +
Preference number: 4 (lower is better)
Translates to: SATQVNLERRMRKRLPHLCKPDL*RLMDRR
Trigger: TCTGCGGTCCATCAGCCTCCACAAGTCAGGTTTGCA...TAAATGAGGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp GTTGGAACTGCATCTGCTCTTCGTTCCCTCACACAGCTCCTTCTTTTTCTCGGGACTTTCGCACTGCTCTaGGGTCTTAGGTCCACTTCT +
Preference number: 4 (lower is better)
Translates to: VGTASALRSLTQLLLFLGTFALL*GLRSTS
Trigger: AGAAGTGGACCTAAGACCCCAGAGCAGTGCGAAAGT...CCCGAGAAAAAGAAGGAGCTGTGTGAGGGAACGAAGAGCAGATGCAGTTCCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp CACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACAAGGCTGAAGCATGCTGCTGGTaGGCAACTGCACCAGGGTCT +
Preference number: 4 (lower is better)
Translates to: HAGNKHPAGSPYVSFYKAEACCW*ATAPGS
Trigger: AGACCCTGGTGCAGTTGCCCACCAGCAGCATGCTTC...AGCCTTGTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
3UTR CAA 72 bp GCAGGAGACCCGGCTTCATTCATCTTTCTAAACCCTTaGGCTTTCACCCTTAGTGCTGCAGTGAATTCGGGC +
Preference number: 4 (lower is better)
Translates to: AGDPASFIFLNP*AFTLSAAVNSG
Trigger: GCCCGAATTCACTGCAGCACTAAGGGTGAAAGCCAAAGGGTTTAGAAAGATGAATGAAGCCGGGTCTCCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR TCA 90 bp TCTTTCCTCAGCCACCCAAGTGAATCTGGAAAGACGCATGCGCAAACGGCTTCCCAGCTGAGGAACATTTaGCACAATCTTACTGACCTC +
Preference number: 4 (lower is better)
Translates to: SFLSHPSESGKTHAQTASQLRNI*HNLTDL
Trigger: GAGGTCAGTAAGATTGTGTCAAATGTTCCTCAGCTG...GGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGAGGAAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR TCA 90 bp CCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTCCAGGACTGCAAACCTaGCTTGTGGAGGCTGATGGA +
Preference number: 4 (lower is better)
Translates to: PKEKHAGNKHPAGSPYVSPGLQT*LVEADG
Trigger: TCCATCAGCCTCCACAAGTCAGGTTTGCAGTCCTGG...ACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR TCA 90 bp GAAAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAACCAGGACTGCAAACCTaGCTTGTGGAGGCTGATGGA +
Preference number: 4 (lower is better)
Translates to: EKSFLLKKSTLETNTLQEPGLQT*LVEADG
Trigger: TCCATCAGCCTCCACAAGTCAGGTTTGCAGTCCTGG...TTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR GCA 90 bp AAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCTAATGCCAAAGGAGTaGAGTGCCCGGGAGCTGTAC +
Preference number: 4 (lower is better)
Translates to: KVLPPKEKHAGNKHPAGSLMPKE*SARELY
Trigger: GTACAGCTCCCGGGCACTGCACTCCTTTGGCATTAG...ACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR GCA 90 bp GAAAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAACTAATGCCAAAGGAGTaGAGTGCCCGGGAGCTGTAC +
Preference number: 4 (lower is better)
Translates to: EKSFLLKKSTLETNTLQELMPKE*SARELY
Trigger: GTACAGCTCCCGGGCACTGCACTCCTTTGGCATTAG...TTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp AAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACAAGGAAGCATGCTGCTGGTaGGCAACTGCACCAGGGTCT +
Preference number: 4 (lower is better)
Translates to: KHAGNKHPAGSPYVSFYKEACCW*ATAPGS
Trigger: AGACCCTGGTGCAGTTGCCCACCAGCAGCATGCTTC...CTTGTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp AACTGTGGACTCCCCCGATTTAAAACAATCCAGGGTATCTCAACAACCCAAACTAGAGAAGCATGCTGCTaGTGGGCAACTGCACCAGGG +
Preference number: 4 (lower is better)
Translates to: NCGLPRFKTIQGISTTQTREACC*WATAPG
Trigger: CCCTGGTGCAGTTGCCCACCAGCAGCATGCTTCTCT...AGTTTGGGTTGTTGAGATACCCTGGATTGTTTTAAATCGGGGGAGTCCACAGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp GAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACAGAGAAGCATGCTGCTaGTGGGCAACTGCACCAGGG +
Preference number: 4 (lower is better)
Translates to: EKHAGNKHPAGSPYVSFYREACC*WATAPG
Trigger: CCCTGGTGCAGTTGCCCACCAGCAGCATGCTTCTCT...GTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR TCA 90 bp CCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGGAGCTTGAGGGAATaGCAGCAGACAGAAGGACAA +
Preference number: 4 (lower is better)
Translates to: PPKEKHAGNKHPAGSPYVRSLRE*QQTEGQ
Trigger: TTGTCCTTCTGTCTGCTGTCATTCCCTCAAGCTCCT...CACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR TCA 90 bp AGAGTAAAACTACCAGGTAAGTGGGTACAAGTCAGAATGAAAACCAGACCCAGGCCAGGACTGCAAACCTaGCTTGTGGAGGCTGATGGA +
Preference number: 4 (lower is better)
Translates to: RVKLPGKWVQVRMKTRPRPGLQT*LVEADG
Trigger: TCCATCAGCCTCCACAAGTCAGGTTTGCAGTCCTGG...CCTGGGTCTGGTTTTCATTCTGACTTGTACCCACTTACCTGGTAGTTTTACTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR TCA 90 bp CCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGTCACAACACTGCCATTaGGTTTGGAAACGGAGGGCA +
Preference number: 4 (lower is better)
Translates to: PPKEKHAGNKHPAGSPYVSQHCH*VWKRRA
Trigger: TGCCCTCCGTTTCCAAACTCAATGGCAGTGTTGTGA...CACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR TCA 90 bp TCTTTCCTCAGCCACCCAAGTGAATCTGGAAAGACGCATGCGCAAACGGCTTCCACTTGGTCATTGAAGTaGACTTCTACTTTCGCACTG +
Preference number: 4 (lower is better)
Translates to: SFLSHPSESGKTHAQTASTWSLK*TSTFAL
Trigger: CAGTGCGAAAGTAGAAGTTCACTTCAATGACCAAGT...GGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGAGGAAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR TCA 90 bp GTTGGAACTGCATCTGCTCTTCGTTCCCTCACACAGCTCCTTCTTTTTCTCGGGCCTCCACTTGGTCATTaGAGTGAACTTCTACTTTCG +
Preference number: 4 (lower is better)
Translates to: VGTASALRSLTQLLLFLGPPLGH*SELLLS
Trigger: CGAAAGTAGAAGTTCACTTCAATGACCAAGTGGAGG...CCCGAGAAAAAGAAGGAGCTGTGTGAGGGAACGAAGAGCAGATGCAGTTCCAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR GCA 90 bp CCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTCCACCACCAATTTCCTaGGTTCCTCGGTGGTATACG +
Preference number: 4 (lower is better)
Translates to: PKEKHAGNKHPAGSPYVSPPPIS*VPRWYT
Trigger: CGTATACCACCGAGGAACGCAGGAAATTGGTGGTGG...ACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR GCA 90 bp GAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACGCCAAAGGAGTGCAGTaGCCGGGAGCTGTACTTCAT +
Preference number: 4 (lower is better)
Translates to: EKHAGNKHPAGSPYVSFYAKGVQ*PGAVLH
Trigger: ATGAAGTACAGCTCCCGGGCACTGCACTCCTTTGGC...GTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR GCA 90 bp AAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACAAGCTAATGCCAAAGGAGTaGAGTGCCCGGGAGCTGTAC +
Preference number: 4 (lower is better)
Translates to: KHAGNKHPAGSPYVSFYKLMPKE*SARELY
Trigger: GTACAGCTCCCGGGCACTGCACTCCTTTGGCATTAG...CTTGTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp CCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTGAGCTCCTCCAACTCTaGCAACTCCTGCAGTATGGT +
Preference number: 4 (lower is better)
Translates to: PKEKHAGNKHPAGSPYVSELLQL*QLLQYG
Trigger: ACCATACTGCAGGAGTTGCCAGAGTTGGAGGAGCTC...ACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp AGGGAGAGAGGGAGACAGGCATGCTCTCACATAAAGACTGGAGATGCAGCCATGATTTCAGTCCAGTCTTaGAGGTTGTTGTCTGTGATG +
Preference number: 4 (lower is better)
Translates to: RERGRQACSHIKTGDAAMISVQS*RLLSVM
Trigger: CATCACAGACAACAACCTCCAAGACTGGACTGAAAT...CATGGCTGCATCTCCAGTCTTTATGTGAGAGCATGCCTGTCTCCCTCTCTCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp CCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTAAACGGAGGGCAATCTaGCCACCACCAATTTCCTGC +
Preference number: 4 (lower is better)
Translates to: PKEKHAGNKHPAGSPYVSKRRAI*PPPISC
Trigger: GCAGGAAATTGGTGGTGGCCAGATTGCCCTCCGTTT...ACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR TCA 90 bp CCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTGACCAGGGTATCCAGTaGAGGAAACATTACACCCAG +
Preference number: 4 (lower is better)
Translates to: PKEKHAGNKHPAGSPYVSDQGIQ*RKHYTQ
Trigger: CTGGGTGTAATGTTTCCTTCACTGGATACCCTGGTC...ACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR TCA 90 bp GAAAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGACCAGGGTATCCAGTaGAGGAAACATTACACCCAG +
Preference number: 4 (lower is better)
Translates to: EKSFLLKKSTLETNTLQEDQGIQ*RKHYTQ
Trigger: CTGGGTGTAATGTTTCCTTCACTGGATACCCTGGTC...TTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR TCA 90 bp AAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTGACCAGGGTATCCAGTaGAGGAAACATTACACCCAG +
Preference number: 4 (lower is better)
Translates to: KVLPPKEKHAGNKHPAGSDQGIQ*RKHYTQ
Trigger: CTGGGTGTAATGTTTCCTTCACTGGATACCCTGGTC...ACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR TCA 90 bp GAAAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAATCACAACACTGCCATTaGGTTTGGAAACGGAGGGCA +
Preference number: 4 (lower is better)
Translates to: EKSFLLKKSTLETNTLQESQHCH*VWKRRA
Trigger: TGCCCTCCGTTTCCAAACTCAATGGCAGTGTTGTGA...TTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR TCA 90 bp CACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACAAGGCTTCACAACACTGCCATTaGGTTTGGAAACGGAGGGCA +
Preference number: 4 (lower is better)
Translates to: HAGNKHPAGSPYVSFYKASQHCH*VWKRRA
Trigger: TGCCCTCCGTTTCCAAACTCAATGGCAGTGTTGTGA...AGCCTTGTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR TCA 90 bp GTTGGAACTGCATCTGCTCTTCGTTCCCTCACACAGCTCCTTCTTTTTCTCGGGACTTGGTCATTGAAGTaGACTTCTACTTTCGCACTG +
Preference number: 4 (lower is better)
Translates to: VGTASALRSLTQLLLFLGTWSLK*TSTFAL
Trigger: CAGTGCGAAAGTAGAAGTTCACTTCAATGACCAAGT...CCCGAGAAAAAGAAGGAGCTGTGTGAGGGAACGAAGAGCAGATGCAGTTCCAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR GCA 90 bp CCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGTCCTGCAGTATGGTGTaGACTGTTTCCCATGATGCT +
Preference number: 4 (lower is better)
Translates to: PPKEKHAGNKHPAGSPYVSCSMV*TVSHDA
Trigger: AGCATCATGGGAAACAGTGCACACCATACTGCAGGA...CACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR GCA 90 bp CACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACAAGGCTATGTCTTCCCAGGACTaGAAACCTGACTTGTGGAGG +
Preference number: 4 (lower is better)
Translates to: HAGNKHPAGSPYVSFYKAMSSQD*KPDLWR
Trigger: CCTCCACAAGTCAGGTTTGCAGTCCTGGGAAGACAT...AGCCTTGTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR GCA 90 bp AAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCTTCTACTTTCGCACTaGTCTGGGGTCTTAGGTCCA +
Preference number: 4 (lower is better)
Translates to: KVLPPKEKHAGNKHPAGSLLLSH*SGVLGP
Trigger: TGGACCTAAGACCCCAGAGCAGTGCGAAAGTAGAAG...ACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR GCA 90 bp GAAAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAAGTAGTAGAGAAGCATaGTGCTGGTGGGCAACTGCA +
Preference number: 4 (lower is better)
Translates to: EKSFLLKKSTLETNTLQESSREA*CWWATA
Trigger: TGCAGTTGCCCACCAGCAGCATGCTTCTCTACTACT...TTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR GCA 90 bp CCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTAGTAGTAGAGAAGCATaGTGCTGGTGGGCAACTGCA +
Preference number: 4 (lower is better)
Translates to: PKEKHAGNKHPAGSPYVSSSREA*CWWATA
Trigger: TGCAGTTGCCCACCAGCAGCATGCTTCTCTACTACT...ACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR GCA 90 bp TGGCTCCAAAGTTCAAAAATAAGAGTGCAACTGTTTCCCAGGCTGACAAAGCAAGCCAAAGGAGTGCAGTaGCCGGGAGCTGTACTTCAT +
Preference number: 4 (lower is better)
Translates to: WLQSSKIRVQLFPRLTKQAKGVQ*PGAVLH
Trigger: ATGAAGTACAGCTCCCGGGCACTGCACTCCTTTGGC...TTGCTTTGTCAGCCTGGGAAACAGTTGCACTCTTATTTTTGAACTTTGGAGCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp GAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACGAGCTCCTCCAACTCTaGCAACTCCTGCAGTATGGT +
Preference number: 4 (lower is better)
Translates to: EKHAGNKHPAGSPYVSFYELLQL*QLLQYG
Trigger: ACCATACTGCAGGAGTTGCCAGAGTTGGAGGAGCTC...GTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp CCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGCATTCAAGTGATTGTTaGCCAGGACCAGGGTATCCA +
Preference number: 4 (lower is better)
Translates to: PPKEKHAGNKHPAGSPYVHSSDC*PGPGYP
Trigger: TGGATACCCTGGTCCTGGCCAACAATCACTTGAATG...CACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp AACTGTGGACTCCCCCGATTTAAAACAATCCAGGGTATCTCAACAACCCAAACTTGCAAACCTGACTTGTaGAGGCTGATGGACCGCAGA +
Preference number: 4 (lower is better)
Translates to: NCGLPRFKTIQGISTTQTCKPDL*RLMDRR
Trigger: TCTGCGGTCCATCAGCCTCCACAAGTCAGGTTTGCA...AGTTTGGGTTGTTGAGATACCCTGGATTGTTTTAAATCGGGGGAGTCCACAGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp GGTGGAAAGCCTGCAAGCTTTCTCCCCAGTCCCACCACTTGCTTCACACTCCTGTCACTTCTTCAAGCTTaGGGAATGAATTTAGTTTGT +
Preference number: 4 (lower is better)
Translates to: GGKPASFLPSPTTCFTLLSLLQA*GMNLVC
Trigger: ACAAACTAAATTCATTCCCCAAGCTTGAAGAAGTGA...CAGGAGTGTGAAGCAAGTGGTGGGACTGGGGAGAAAGCTTGCAGGCTTTCCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp AGAGTAAAACTACCAGGTAAGTGGGTACAAGTCAGAATGAAAACCAGACCCAGGAAACGGAGGGCAATCTaGCCACCACCAATTTCCTGC +
Preference number: 4 (lower is better)
Translates to: RVKLPGKWVQVRMKTRPRKRRAI*PPPISC
Trigger: GCAGGAAATTGGTGGTGGCCAGATTGCCCTCCGTTT...CCTGGGTCTGGTTTTCATTCTGACTTGTACCCACTTACCTGGTAGTTTTACTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp AAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACAAGAAACGGAGGGCAATCTaGCCACCACCAATTTCCTGC +
Preference number: 4 (lower is better)
Translates to: KHAGNKHPAGSPYVSFYKKRRAI*PPPISC
Trigger: GCAGGAAATTGGTGGTGGCCAGATTGCCCTCCGTTT...CTTGTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp CCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTACTTTCGCACTGCTCTaGGGTCTTAGGTCCACTTCT +
Preference number: 4 (lower is better)
Translates to: PKEKHAGNKHPAGSPYVSTFALL*GLRSTS
Trigger: AGAAGTGGACCTAAGACCCCAGAGCAGTGCGAAAGT...ACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR TCA 90 bp CCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTATGCTTTGCTGTTGTTaGGGACAAGTTTGCGAACCC +
Preference number: 4 (lower is better)
Translates to: PKEKHAGNKHPAGSPYVSMLCCC*GQVCEP
Trigger: GGGTTCGCAAACTTGTCCTCAACAACAGCAAAGCAT...ACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR TCA 90 bp TCCTTTCCTTCCCCACAACCGAAAAGACTTTCTGCTTTAGAAAGGCATGTTCTCAGGAGCTTGAGGGAATaGCAGCAGACAGAAGGACAA +
Preference number: 4 (lower is better)
Translates to: SFPSPQPKRLSALERHVLRSLRE*QQTEGQ
Trigger: TTGTCCTTCTGTCTGCTGTCATTCCCTCAAGCTCCT...GAGAACATGCCTTTCTAAAGCAGAAAGTCTTTTCGGTTGTGGGGAAGGAAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR TCA 90 bp AGAGTAAAACTACCAGGTAAGTGGGTACAAGTCAGAATGAAAACCAGACCCAGGGACCAGGGTATCCAGTaGAGGAAACATTACACCCAG +
Preference number: 4 (lower is better)
Translates to: RVKLPGKWVQVRMKTRPRDQGIQ*RKHYTQ
Trigger: CTGGGTGTAATGTTTCCTTCACTGGATACCCTGGTC...CCTGGGTCTGGTTTTCATTCTGACTTGTACCCACTTACCTGGTAGTTTTACTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR GCA 90 bp CCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTCCTGCAGTATGGTGTaGACTGTTTCCCATGATGCT +
Preference number: 4 (lower is better)
Translates to: PKEKHAGNKHPAGSPYVSSCSMV*TVSHDA
Trigger: AGCATCATGGGAAACAGTGCACACCATACTGCAGGA...ACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR GCA 90 bp AAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACAAGATGTCTTCCCAGGACTaGAAACCTGACTTGTGGAGG +
Preference number: 4 (lower is better)
Translates to: KHAGNKHPAGSPYVSFYKMSSQD*KPDLWR
Trigger: CCTCCACAAGTCAGGTTTGCAGTCCTGGGAAGACAT...CTTGTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR GCA 90 bp TCCTTTCCTTCCCCACAACCGAAAAGACTTTCTGCTTTAGAAAGGCATGTTCTCCTTCTACTTTCGCACTaGTCTGGGGTCTTAGGTCCA +
Preference number: 4 (lower is better)
Translates to: SFPSPQPKRLSALERHVLLLLSH*SGVLGP
Trigger: TGGACCTAAGACCCCAGAGCAGTGCGAAAGTAGAAG...GAGAACATGCCTTTCTAAAGCAGAAAGTCTTTTCGGTTGTGGGGAAGGAAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR GCA 90 bp AACTGTGGACTCCCCCGATTTAAAACAATCCAGGGTATCTCAACAACCCAAACTAGTAGTAGAGAAGCATaGTGCTGGTGGGCAACTGCA +
Preference number: 4 (lower is better)
Translates to: NCGLPRFKTIQGISTTQTSSREA*CWWATA
Trigger: TGCAGTTGCCCACCAGCAGCATGCTTCTCTACTACT...AGTTTGGGTTGTTGAGATACCCTGGATTGTTTTAAATCGGGGGAGTCCACAGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR GCA 90 bp TCCTTTCCTTCCCCACAACCGAAAAGACTTTCTGCTTTAGAAAGGCATGTTCTCAGTAGTAGAGAAGCATaGTGCTGGTGGGCAACTGCA +
Preference number: 4 (lower is better)
Translates to: SFPSPQPKRLSALERHVLSSREA*CWWATA
Trigger: TGCAGTTGCCCACCAGCAGCATGCTTCTCTACTACT...GAGAACATGCCTTTCTAAAGCAGAAAGTCTTTTCGGTTGTGGGGAAGGAAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp CCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGACCTCATGCCAGTCTTaGAGCTTGTTGTCAGAAAGA +
Preference number: 4 (lower is better)
Translates to: PPKEKHAGNKHPAGSPYVTSCQS*SLLSER
Trigger: TCTTTCTGACAACAAGCTCCAAGACTGGCATGAGGT...CACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp CCCGATTTAAAACAATCCAGGGTATCTCAACAACCCAAACTAAGAGATCCCTCTGAGCTCCTCCAACTCTaGCAACTCCTGCAGTATGGT +
Preference number: 4 (lower is better)
Translates to: PDLKQSRVSQQPKLRDPSELLQL*QLLQYG
Trigger: ACCATACTGCAGGAGTTGCCAGAGTTGGAGGAGCTC...AGAGGGATCTCTTAGTTTGGGTTGTTGAGATACCCTGGATTGTTTTAAATCGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp AAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTGCAAACCTGACTTGTaGAGGCTGATGGACCGCAGA +
Preference number: 4 (lower is better)
Translates to: KEKHAGNKHPAGSPYVSFCKPDL*RLMDRR
Trigger: TCTGCGGTCCATCAGCCTCCACAAGTCAGGTTTGCA...AAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp GAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACACTTTCGCACTGCTCTaGGGTCTTAGGTCCACTTCT +
Preference number: 4 (lower is better)
Translates to: EKHAGNKHPAGSPYVSFYTFALL*GLRSTS
Trigger: AGAAGTGGACCTAAGACCCCAGAGCAGTGCGAAAGT...GTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp CCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGCTTCTCCCACTAGGCTaGTCCATCTTCTTTTCTGAA +
Preference number: 4 (lower is better)
Translates to: PPKEKHAGNKHPAGSPYVLLPLG*SIFFSE
Trigger: TTCAGAAAAGAAGATGGACCAGCCTAGTGGGAGAAG...CACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066179.14
CDS-3UTR TCA 90 bp AAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACAAGATGCTTTGCTGTTGTTaGGGACAAGTTTGCGAACCC +
Preference number: 4 (lower is better)
Translates to: KHAGNKHPAGSPYVSFYKMLCCC*GQVCEP
Trigger: GGGTTCGCAAACTTGTCCTCAACAACAGCAAAGCAT...CTTGTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR TCA 90 bp GAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACATGCTTTGCTGTTGTTaGGGACAAGTTTGCGAACCC +
Preference number: 4 (lower is better)
Translates to: EKHAGNKHPAGSPYVSFYMLCCC*GQVCEP
Trigger: GGGTTCGCAAACTTGTCCTCAACAACAGCAAAGCAT...GTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR TCA 90 bp CCCGATTTAAAACAATCCAGGGTATCTCAACAACCCAAACTAAGAGATCCCTCTTCGATTGCATTCAAGTaGTTGTTGGCCAGGACCAGG +
Preference number: 4 (lower is better)
Translates to: PDLKQSRVSQQPKLRDPSSIAFK*LLARTR
Trigger: CCTGGTCCTGGCCAACAATCACTTGAATGCAATCGA...AGAGGGATCTCTTAGTTTGGGTTGTTGAGATACCCTGGATTGTTTTAAATCGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR TCA 90 bp AAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTCGATTGCATTCAAGTaGTTGTTGGCCAGGACCAGG +
Preference number: 4 (lower is better)
Translates to: KEKHAGNKHPAGSPYVSFSIAFK*LLARTR
Trigger: CCTGGTCCTGGCCAACAATCACTTGAATGCAATCGA...AAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR GCA 90 bp CCCGATTTAAAACAATCCAGGGTATCTCAACAACCCAAACTAAGAGATCCCTCTATGTCTTCCCAGGACTaGAAACCTGACTTGTGGAGG +
Preference number: 4 (lower is better)
Translates to: PDLKQSRVSQQPKLRDPSMSSQD*KPDLWR
Trigger: CCTCCACAAGTCAGGTTTGCAGTCCTGGGAAGACAT...AGAGGGATCTCTTAGTTTGGGTTGTTGAGATACCCTGGATTGTTTTAAATCGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp GAAAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAACCTCATGCCAGTCTTaGAGCTTGTTGTCAGAAAGA +
Preference number: 4 (lower is better)
Translates to: EKSFLLKKSTLETNTLQETSCQS*SLLSER
Trigger: TCTTTCTGACAACAAGCTCCAAGACTGGCATGAGGT...TTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp AACTGTGGACTCCCCCGATTTAAAACAATCCAGGGTATCTCAACAACCCAAACTCATTCAAGTGATTGTTaGCCAGGACCAGGGTATCCA +
Preference number: 4 (lower is better)
Translates to: NCGLPRFKTIQGISTTQTHSSDC*PGPGYP
Trigger: TGGATACCCTGGTCCTGGCCAACAATCACTTGAATG...AGTTTGGGTTGTTGAGATACCCTGGATTGTTTTAAATCGGGGGAGTCCACAGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp GAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACCATTCAAGTGATTGTTaGCCAGGACCAGGGTATCCA +
Preference number: 4 (lower is better)
Translates to: EKHAGNKHPAGSPYVSFYHSSDC*PGPGYP
Trigger: TGGATACCCTGGTCCTGGCCAACAATCACTTGAATG...GTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR TCA 90 bp AAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTACTTGGTCATTGAAGTaGACTTCTACTTTCGCACTG +
Preference number: 4 (lower is better)
Translates to: KVLPPKEKHAGNKHPAGSTWSLK*TSTFAL
Trigger: CAGTGCGAAAGTAGAAGTTCACTTCAATGACCAAGT...ACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR TCA 90 bp GAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACCCTCCACTTGGTCATTaGAGTGAACTTCTACTTTCG +
Preference number: 4 (lower is better)
Translates to: EKHAGNKHPAGSPYVSFYPPLGH*SELLLS
Trigger: CGAAAGTAGAAGTTCACTTCAATGACCAAGTGGAGG...GTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR GCA 90 bp TGGCTCCAAAGTTCAAAAATAAGAGTGCAACTGTTTCCCAGGCTGACAAAGCAAAGCAGGCTCCTCGATTaGATTCAAGTGATTGTTGGC +
Preference number: 4 (lower is better)
Translates to: WLQSSKIRVQLFPRLTKQSRLLD*IQVIVG
Trigger: GCCAACAATCACTTGAATGCAATCGAGGAGCCTGCT...TTGCTTTGTCAGCCTGGGAAACAGTTGCACTCTTATTTTTGAACTTTGGAGCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR GCA 90 bp AAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTAGCAGGCTCCTCGATTaGATTCAAGTGATTGTTGGC +
Preference number: 4 (lower is better)
Translates to: KEKHAGNKHPAGSPYVSFSRLLD*IQVIVG
Trigger: GCCAACAATCACTTGAATGCAATCGAGGAGCCTGCT...AAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp TCCTTTCCTTCCCCACAACCGAAAAGACTTTCTGCTTTAGAAAGGCATGTTCTCACCTCATGCCAGTCTTaGAGCTTGTTGTCAGAAAGA +
Preference number: 4 (lower is better)
Translates to: SFPSPQPKRLSALERHVLTSCQS*SLLSER
Trigger: TCTTTCTGACAACAAGCTCCAAGACTGGCATGAGGT...GAGAACATGCCTTTCTAAAGCAGAAAGTCTTTTCGGTTGTGGGGAAGGAAAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp GAAAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAATTTCAGTCCAGTCTTaGAGGTTGTTGTCTGTGATG +
Preference number: 4 (lower is better)
Translates to: EKSFLLKKSTLETNTLQEISVQS*RLLSVM
Trigger: CATCACAGACAACAACCTCCAAGACTGGACTGAAAT...TTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp AAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTCATTCAAGTGATTGTTaGCCAGGACCAGGGTATCCA +
Preference number: 4 (lower is better)
Translates to: KEKHAGNKHPAGSPYVSFHSSDC*PGPGYP
Trigger: TGGATACCCTGGTCCTGGCCAACAATCACTTGAATG...AAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp AGAACAGAACTAAATAGAAACAGCAAGGAAACCATCCAGATTAACAAAGAATGGGAAGCATGCTGCTGGTaGGCAACTGCACCAGGGTCT +
Preference number: 4 (lower is better)
Translates to: RTELNRNSKETIQINKEWEACCW*ATAPGS
Trigger: AGACCCTGGTGCAGTTGCCCACCAGCAGCATGCTTC...CCATTCTTTGTTAATCTGGATGGTTTCCTTGCTGTTTCTATTTAGTTCTGTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR TCA 90 bp AAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTCAGCTGAGGAACATTTaGCACAATCTTACTGACCTC +
Preference number: 4 (lower is better)
Translates to: KEKHAGNKHPAGSPYVSFQLRNI*HNLTDL
Trigger: GAGGTCAGTAAGATTGTGTCAAATGTTCCTCAGCTG...AAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR TCA 90 bp CCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTAGAAACTCCAGCTaGGGAACATTTGACACAATC +
Preference number: 4 (lower is better)
Translates to: PKEKHAGNKHPAGSPYVSFRNSS*GTFDTI
Trigger: GATTGTGTCAAATGTTCCTCAGCTGGAGTTTCTAAA...ACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR TCA 90 bp AAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTGTCCATCTTCTTTTCTaGAAAGTTCAGAGCAGGGCT +
Preference number: 4 (lower is better)
Translates to: KEKHAGNKHPAGSPYVSFVHLLF*KVQSRA
Trigger: AGCCCTGCTCTGAACTTTTCAGAAAAGAAGATGGAC...AAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000066179.14
CDS-3UTR CCA 90 bp AAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTATTTCAGTCCAGTCTTaGAGGTTGTTGTCTGTGATG +
Preference number: 4 (lower is better)
Translates to: KEKHAGNKHPAGSPYVSFISVQS*RLLSVM
Trigger: CATCACAGACAACAACCTCCAAGACTGGACTGAAAT...AAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp CCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTCACTTCTTCAAGCTTaGGGAATGAATTTAGTTTGT +
Preference number: 4 (lower is better)
Translates to: PKEKHAGNKHPAGSPYVSSLLQA*GMNLVC
Trigger: ACAAACTAAATTCATTCCCCAAGCTTGAAGAAGTGA...ACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CCA 90 bp GAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACTCACTTCTTCAAGCTTaGGGAATGAATTTAGTTTGT +
Preference number: 4 (lower is better)
Translates to: EKHAGNKHPAGSPYVSFYSLLQA*GMNLVC
Trigger: ACAAACTAAATTCATTCCCCAAGCTTGAAGAAGTGA...GTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR TCA 90 bp AGAACAGAACTAAATAGAAACAGCAAGGAAACCATCCAGATTAACAAAGAATGGCAGCTGAGGAACATTTaGCACAATCTTACTGACCTC +
Preference number: 4 (lower is better)
Translates to: RTELNRNSKETIQINKEWQLRNI*HNLTDL
Trigger: GAGGTCAGTAAGATTGTGTCAAATGTTCCTCAGCTG...CCATTCTTTGTTAATCTGGATGGTTTCCTTGCTGTTTCTATTTAGTTCTGTTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR TCA 90 bp AGAACAGAACTAAATAGAAACAGCAAGGAAACCATCCAGATTAACAAAGAATGGCCTCCACTTGGTCATTaGAGTGAACTTCTACTTTCG +
Preference number: 4 (lower is better)
Translates to: RTELNRNSKETIQINKEWPPLGH*SELLLS
Trigger: CGAAAGTAGAAGTTCACTTCAATGACCAAGTGGAGG...CCATTCTTTGTTAATCTGGATGGTTTCCTTGCTGTTTCTATTTAGTTCTGTTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CCA 90 bp AAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTCACTTCTTCAAGCTTaGGGAATGAATTTAGTTTGT +
Preference number: 4 (lower is better)
Translates to: KEKHAGNKHPAGSPYVSFSLLQA*GMNLVC
Trigger: ACAAACTAAATTCATTCCCCAAGCTTGAAGAAGTGA...AAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS CCA 90 bp CGGGAGGTTGAGGCGATCTTTCATAGGCGAGCCCTGGGGAGTGGCTaGGACATGGACTCCCACCCCAGGGCCACGGCGGTAAGGGAAGTT +
Preference number: 5 (lower is better)
Translates to: REVEAIFHRRALGSG*DMDSHPRATAVREV
Trigger: AACTTCCCTTACCGCCGTGGCCCTGGGGTGGGAGTCCATGTCCCAGCCACTCCCCAGGGCTCGCCTATGAAAGATCGCCTCAACCTCCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000134374.2
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp GGTGGAAAGCCTGCAAGCTTTCTCCCCAGTCCCACCACTTGCTTCACACTCCTGGACTGCAAACCTGACTaGTGGAGGCTGATGGACCGC +
Preference number: 5 (lower is better)
Translates to: GGKPASFLPSPTTCFTLLDCKPD*WRLMDR
Trigger: GCGGTCCATCAGCCTCCACAAGTCAGGTTTGCAGTC...CAGGAGTGTGAAGCAAGTGGTGGGACTGGGGAGAAAGCTTGCAGGCTTTCCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS CCA 90 bp AATGCCAAAGGAGTGCAGTGCCCGGGAGCTGTACTTCATCTCCTCTaGGCCAAACGGGGCCTCGTGGTCAAAGTAGTAGAGAAGCATGCT +
Preference number: 5 (lower is better)
Translates to: NAKGVQCPGAVLHLL*AKRGLVVKVVEKHA
Trigger: AGCATGCTTCTCTACTACTTTGACCACGAGGCCCCGTTTGGCCCAGAGGAGATGAAGTACAGCTCCCGGGCACTGCACTCCTTTGGCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp GGTGGAAAGCCTGCAAGCTTTCTCCCCAGTCCCACCACTTGCTTCACACTCCTGCAGTCTTGGAGGTTGTaGTCTGTGATGTGTAGGAGC +
Preference number: 5 (lower is better)
Translates to: GGKPASFLPSPTTCFTLLQSWRL*SVMCRS
Trigger: GCTCCTACACATCACAGACAACAACCTCCAAGACTG...CAGGAGTGTGAAGCAAGTGGTGGGACTGGGGAGAAAGCTTGCAGGCTTTCCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp GGTGGAAAGCCTGCAAGCTTTCTCCCCAGTCCCACCACTTGCTTCACACTCCTGCAGCAGGCTCCTCGATaGCATTCAAGTGATTGTTGG +
Preference number: 5 (lower is better)
Translates to: GGKPASFLPSPTTCFTLLQQAPR*HSSDCW
Trigger: CCAACAATCACTTGAATGCAATCGAGGAGCCTGCTG...CAGGAGTGTGAAGCAAGTGGTGGGACTGGGGAGAAAGCTTGCAGGCTTTCCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp CAGTCCCACCACTTGCTTCACACTCCTGGCCAGCTTCTCAGCCCATGTTCTGCTGATGCTTTGCTGTTGTaGAGGACAAGTTTGCGAACC +
Preference number: 5 (lower is better)
Translates to: QSHHLLHTPGQLLSPCSADALLL*RTSLRT
Trigger: GGTTCGCAAACTTGTCCTCAACAACAGCAAAGCATC...AGCAGAACATGGGCTGAGAAGCTGGCCAGGAGTGTGAAGCAAGTGGTGGGACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp AGGGAGAGAGGGAGACAGGCATGCTCTCACATAAAGACTGGAGATGCAGCCATGGTCACAACACTGCCATaGAGTTTGGAAACGGAGGGC +
Preference number: 5 (lower is better)
Translates to: RERGRQACSHIKTGDAAMVTTLP*SLETEG
Trigger: GCCCTCCGTTTCCAAACTCAATGGCAGTGTTGTGAC...CATGGCTGCATCTCCAGTCTTTATGTGAGAGCATGCCTGTCTCCCTCTCTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp AAAGCCTGCAAGCTTTCTCCCCAGTCCCACCACTTGCTTCACACTCCTGGCCAGCAGTCTTGGAGCTTGTaGTCAGAAAGATCGAGTTCT +
Preference number: 5 (lower is better)
Translates to: KACKLSPQSHHLLHTPGQQSWSL*SERSSS
Trigger: AGAACTCGATCTTTCTGACAACAAGCTCCAAGACTG...CTGGCCAGGAGTGTGAAGCAAGTGGTGGGACTGGGGAGAAAGCTTGCAGGCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp AGGGAGAGAGGGAGACAGGCATGCTCTCACATAAAGACTGGAGATGCAGCCATGGACCTCATGCCAGTCTaGGAGCTTGTTGTCAGAAAG +
Preference number: 5 (lower is better)
Translates to: RERGRQACSHIKTGDAAMDLMPV*ELVVRK
Trigger: CTTTCTGACAACAAGCTCCAAGACTGGCATGAGGTC...CATGGCTGCATCTCCAGTCTTTATGTGAGAGCATGCCTGTCTCCCTCTCTCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp AAAGCCTGCAAGCTTTCTCCCCAGTCCCACCACTTGCTTCACACTCCTGGCCAGCATGATGCTTTGCTGTaGTTGAGGACAAGTTTGCGA +
Preference number: 5 (lower is better)
Translates to: KACKLSPQSHHLLHTPGQHDALL*LRTSLR
Trigger: TCGCAAACTTGTCCTCAACAACAGCAAAGCATCATG...CTGGCCAGGAGTGTGAAGCAAGTGGTGGGACTGGGGAGAAAGCTTGCAGGCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp AGGGAGAGAGGGAGACAGGCATGCTCTCACATAAAGACTGGAGATGCAGCCATGCAGTCTTGGAGGTTGTaGTCTGTGATGTGTAGGAGC +
Preference number: 5 (lower is better)
Translates to: RERGRQACSHIKTGDAAMQSWRL*SVMCRS
Trigger: GCTCCTACACATCACAGACAACAACCTCCAAGACTG...CATGGCTGCATCTCCAGTCTTTATGTGAGAGCATGCCTGTCTCCCTCTCTCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp TCTTTCCTCAGCCACCCAAGTGAATCTGGAAAGACGCATGCGCAAACGGCTTCCGTCCAGTCTTGGAGGTaGTTGTCTGTGATGTGTAGG +
Preference number: 5 (lower is better)
Translates to: SFLSHPSESGKTHAQTASVQSWR*LSVMCR
Trigger: CCTACACATCACAGACAACAACCTCCAAGACTGGAC...GGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGAGGAAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp AAAGCCTGCAAGCTTTCTCCCCAGTCCCACCACTTGCTTCACACTCCTGGCCAGGATTTCAGTCCAGTCTaGGAGGTTGTTGTCTGTGAT +
Preference number: 5 (lower is better)
Translates to: KACKLSPQSHHLLHTPGQDFSPV*EVVVCD
Trigger: ATCACAGACAACAACCTCCAAGACTGGACTGAAATC...CTGGCCAGGAGTGTGAAGCAAGTGGTGGGACTGGGGAGAAAGCTTGCAGGCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp AGGGAGAGAGGGAGACAGGCATGCTCTCACATAAAGACTGGAGATGCAGCCATGCAGCAGGCTCCTCGATaGCATTCAAGTGATTGTTGG +
Preference number: 5 (lower is better)
Translates to: RERGRQACSHIKTGDAAMQQAPR*HSSDCW
Trigger: CCAACAATCACTTGAATGCAATCGAGGAGCCTGCTG...CATGGCTGCATCTCCAGTCTTTATGTGAGAGCATGCCTGTCTCCCTCTCTCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS TCA 90 bp TGCCAGTCTTGGAGCTTGTTGTCAGAAAGATCGAGTTCTGACACGTaGGCACAGAAGGCTGCGATTTCTCTTTCATCTCCCGCGCAGGTA +
Preference number: 5 (lower is better)
Translates to: CQSWSLLSERSSSDT*AQKAAISLSSPAQV
Trigger: TACCTGCGCGGGAGATGAAAGAGAAATCGCAGCCTTCTGTGCTCACGTGTCAGAACTCGATCTTTCTGACAACAAGCTCCAAGACTGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS TCA 90 bp GACCTCATGCCAGTCTTGGAGCTTGTTGTCAGAAAGATCGAGTTCTaGCACGTGAGCACAGAAGGCTGCGATTTCTCTTTCATCTCCCGC +
Preference number: 5 (lower is better)
Translates to: DLMPVLELVVRKIEF*HVSTEGCDFSFISR
Trigger: GCGGGAGATGAAAGAGAAATCGCAGCCTTCTGTGCTCACGTGTCAGAACTCGATCTTTCTGACAACAAGCTCCAAGACTGGCATGAGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS TCA 90 bp CCTGCAGTATGGTGTGCACTGTTTCCCATGATGCTTTGCTGTTGTTaGGGACAAGTTTGCGAACCCCAGAGAAGGACCCAGCACATGTTC +
Preference number: 5 (lower is better)
Translates to: PAVWCALFPMMLCCC*GQVCEPQRRTQHMF
Trigger: GAACATGTGCTGGGTCCTTCTCTGGGGTTCGCAAACTTGTCCTCAACAACAGCAAAGCATCATGGGAAACAGTGCACACCATACTGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS TCA 90 bp GTCTGGTCCAGGCGGATGCTCATTTCCTCCACTTGGTCATTGAAGTaGACTTCTACTTTCGCACTGCTCTGGGGTCTTAGGTCCACTTCT +
Preference number: 5 (lower is better)
Translates to: VWSRRMLISSTWSLK*TSTFALLWGLRSTS
Trigger: AGAAGTGGACCTAAGACCCCAGAGCAGTGCGAAAGTAGAAGTTCACTTCAATGACCAAGTGGAGGAAATGAGCATCCGCCTGGACCAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp TCTTTCCTCAGCCACCCAAGTGAATCTGGAAAGACGCATGCGCAAACGGCTTCCGATGCTTTGCTGTTGTaGAGGACAAGTTTGCGAACC +
Preference number: 5 (lower is better)
Translates to: SFLSHPSESGKTHAQTASDALLL*RTSLRT
Trigger: GGTTCGCAAACTTGTCCTCAACAACAGCAAAGCATC...GGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGAGGAAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp GTTGGAACTGCATCTGCTCTTCGTTCCCTCACACAGCTCCTTCTTTTTCTCGGGGTCCAGTCTTGGAGGTaGTTGTCTGTGATGTGTAGG +
Preference number: 5 (lower is better)
Translates to: VGTASALRSLTQLLLFLGVQSWR*LSVMCR
Trigger: CCTACACATCACAGACAACAACCTCCAAGACTGGAC...CCCGAGAAAAAGAAGGAGCTGTGTGAGGGAACGAAGAGCAGATGCAGTTCCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS TCA 90 bp AACAACCTAGCCAGGGAGTCAGCAGGCTCCTCGATTGCATTCAAGTaGTTGTTGGCCAGGACCAGGGTATCCAGTGAAGGAAACATTACA +
Preference number: 5 (lower is better)
Translates to: NNLARESAGSSIAFK*LLARTRVSSEGNIT
Trigger: TGTAATGTTTCCTTCACTGGATACCCTGGTCCTGGCCAACAATCACTTGAATGCAATCGAGGAGCCTGCTGACTCCCTGGCTAGGTTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS GCA 90 bp CACAGGAAGAGCTCCTCCAACTCTGGCAACTCCTGCAGTATGGTGTaGACTGTTTCCCATGATGCTTTGCTGTTGTTGAGGACAAGTTTG +
Preference number: 5 (lower is better)
Translates to: HRKSSSNSGNSCSMV*TVSHDALLLLRTSL
Trigger: CAAACTTGTCCTCAACAACAGCAAAGCATCATGGGAAACAGTGCACACCATACTGCAGGAGTTGCCAGAGTTGGAGGAGCTCTTCCTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS CCA 90 bp AAACGGAGGGCAATCTGGCCACCACCAATTTCCTGCGTTCCTCGGTaGTATACGGCTGTAGAAGAGGAATTCCTAGCAATCTCACTTCTT +
Preference number: 5 (lower is better)
Translates to: KRRAIWPPPISCVPR*YTAVEEEFLAISLL
Trigger: AAGAAGTGAGATTGCTAGGAATTCCTCTTCTACAGCCGTATACCACCGAGGAACGCAGGAAATTGGTGGTGGCCAGATTGCCCTCCGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp AGGGAGAGAGGGAGACAGGCATGCTCTCACATAAAGACTGGAGATGCAGCCATGCAGTCTTGGAGCTTGTaGTCAGAAAGATCGAGTTCT +
Preference number: 5 (lower is better)
Translates to: RERGRQACSHIKTGDAAMQSWSL*SERSSS
Trigger: AGAACTCGATCTTTCTGACAACAAGCTCCAAGACTG...CATGGCTGCATCTCCAGTCTTTATGTGAGAGCATGCCTGTCTCCCTCTCTCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp ACATGCAGGCTCAAAGGTCCACGGTCTTTTCTCTCCTCCTTCTGGGTCTGTTATTTGTTGAGGACAAGTTaGCGAACCCCAGAGAAGGAC +
Preference number: 5 (lower is better)
Translates to: TCRLKGPRSFLSSFWVCYLLRTS*RTPEKD
Trigger: GTCCTTCTCTGGGGTTCGCAAACTTGTCCTCAACAA...ATAACAGACCCAGAAGGAGGAGAGAAAAGACCGTGGACCTTTGAGCCTGCATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp TCAGCCACCCAAGTGAATCTGGAAAGACGCATGCGCAAACGGCTTCCTCATTTAGTCCAGTCTTGGAGGTaGTTGTCTGTGATGTGTAGG +
Preference number: 5 (lower is better)
Translates to: SATQVNLERRMRKRLPHLVQSWR*LSVMCR
Trigger: CCTACACATCACAGACAACAACCTCCAAGACTGGAC...TAAATGAGGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp TCTTTCCTCAGCCACCCAAGTGAATCTGGAAAGACGCATGCGCAAACGGCTTCCGATTTCAGTCCAGTCTaGGAGGTTGTTGTCTGTGAT +
Preference number: 5 (lower is better)
Translates to: SFLSHPSESGKTHAQTASDFSPV*EVVVCD
Trigger: ATCACAGACAACAACCTCCAAGACTGGACTGAAATC...GGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGAGGAAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp TCCTTTCCTTCCCCACAACCGAAAAGACTTTCTGCTTTAGAAAGGCATGTTCTCGACTGCAAACCTGACTaGTGGAGGCTGATGGACCGC +
Preference number: 5 (lower is better)
Translates to: SFPSPQPKRLSALERHVLDCKPD*WRLMDR
Trigger: GCGGTCCATCAGCCTCCACAAGTCAGGTTTGCAGTC...GAGAACATGCCTTTCTAAAGCAGAAAGTCTTTTCGGTTGTGGGGAAGGAAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS GCA 90 bp TTTGATTCCACAAAAATTTTATCTCCATCCCTAATGCCAAAGGAGTaGAGTGCCCGGGAGCTGTACTTCATCTCCTCTGGGCCAAACGGG +
Preference number: 5 (lower is better)
Translates to: FDSTKILSPSLMPKE*SARELYFISSGPNG
Trigger: CCCGTTTGGCCCAGAGGAGATGAAGTACAGCTCCCGGGCACTGCACTCCTTTGGCATTAGGGATGGAGATAAAATTTTTGTGGAATCAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp TCAGCCACCCAAGTGAATCTGGAAAGACGCATGCGCAAACGGCTTCCTCATTTAGATGCTTTGCTGTTGTaGAGGACAAGTTTGCGAACC +
Preference number: 5 (lower is better)
Translates to: SATQVNLERRMRKRLPHLDALLL*RTSLRT
Trigger: GGTTCGCAAACTTGTCCTCAACAACAGCAAAGCATC...TAAATGAGGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp AAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTGACTGCAAACCTGACTaGTGGAGGCTGATGGACCGC +
Preference number: 5 (lower is better)
Translates to: KEKHAGNKHPAGSPYVSFDCKPD*WRLMDR
Trigger: GCGGTCCATCAGCCTCCACAAGTCAGGTTTGCAGTC...AAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp GAAAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCACAACACTGCCATaGAGTTTGGAAACGGAGGGC +
Preference number: 5 (lower is better)
Translates to: EKSFLLKKSTLETNTLQEVTTLP*SLETEG
Trigger: GCCCTCCGTTTCCAAACTCAATGGCAGTGTTGTGAC...TTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp AAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTGTCACAACACTGCCATaGAGTTTGGAAACGGAGGGC +
Preference number: 5 (lower is better)
Translates to: KVLPPKEKHAGNKHPAGSVTTLP*SLETEG
Trigger: GCCCTCCGTTTCCAAACTCAATGGCAGTGTTGTGAC...ACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS TCA 90 bp CTCGATTGCATTCAAGTGATTGTTGGCCAGGACCAGGGTATCCAGTaGAGGAAACATTACACCCAGCTTTCGGATTTCAGTCCAGTCTTG +
Preference number: 5 (lower is better)
Translates to: LDCIQVIVGQDQGIQ*RKHYTQLSDFSPVL
Trigger: CAAGACTGGACTGAAATCCGAAAGCTGGGTGTAATGTTTCCTTCACTGGATACCCTGGTCCTGGCCAACAATCACTTGAATGCAATCGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp TCAGCCACCCAAGTGAATCTGGAAAGACGCATGCGCAAACGGCTTCCTCATTTACAGTCTTGGAGCTTGTaGTCAGAAAGATCGAGTTCT +
Preference number: 5 (lower is better)
Translates to: SATQVNLERRMRKRLPHLQSWSL*SERSSS
Trigger: AGAACTCGATCTTTCTGACAACAAGCTCCAAGACTG...TAAATGAGGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp GAAAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGACCTCATGCCAGTCTaGGAGCTTGTTGTCAGAAAG +
Preference number: 5 (lower is better)
Translates to: EKSFLLKKSTLETNTLQEDLMPV*ELVVRK
Trigger: CTTTCTGACAACAAGCTCCAAGACTGGCATGAGGTC...TTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp AAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTTTGTTGAGGACAAGTTaGCGAACCCCAGAGAAGGAC +
Preference number: 5 (lower is better)
Translates to: KVLPPKEKHAGNKHPAGSLLRTS*RTPEKD
Trigger: GTCCTTCTCTGGGGTTCGCAAACTTGTCCTCAACAA...ACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp CCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTGTTGAGGACAAGTTaGCGAACCCCAGAGAAGGAC +
Preference number: 5 (lower is better)
Translates to: PKEKHAGNKHPAGSPYVSLLRTS*RTPEKD
Trigger: GTCCTTCTCTGGGGTTCGCAAACTTGTCCTCAACAA...ACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp CCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTCAGTCTTGGAGGTTGTaGTCTGTGATGTGTAGGAGC +
Preference number: 5 (lower is better)
Translates to: PKEKHAGNKHPAGSPYVSQSWRL*SVMCRS
Trigger: GCTCCTACACATCACAGACAACAACCTCCAAGACTG...ACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp CCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTGTCCAGTCTTGGAGGTaGTTGTCTGTGATGTGTAGG +
Preference number: 5 (lower is better)
Translates to: PKEKHAGNKHPAGSPYVSVQSWR*LSVMCR
Trigger: CCTACACATCACAGACAACAACCTCCAAGACTGGAC...ACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp GAAAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAACAGCAGGCTCCTCGATaGCATTCAAGTGATTGTTGG +
Preference number: 5 (lower is better)
Translates to: EKSFLLKKSTLETNTLQEQQAPR*HSSDCW
Trigger: CCAACAATCACTTGAATGCAATCGAGGAGCCTGCTG...TTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp AGAGTAAAACTACCAGGTAAGTGGGTACAAGTCAGAATGAAAACCAGACCCAGGGTCACAACACTGCCATaGAGTTTGGAAACGGAGGGC +
Preference number: 5 (lower is better)
Translates to: RVKLPGKWVQVRMKTRPRVTTLP*SLETEG
Trigger: GCCCTCCGTTTCCAAACTCAATGGCAGTGTTGTGAC...CCTGGGTCTGGTTTTCATTCTGACTTGTACCCACTTACCTGGTAGTTTTACTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp AAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACAAGGACCTCATGCCAGTCTaGGAGCTTGTTGTCAGAAAG +
Preference number: 5 (lower is better)
Translates to: KHAGNKHPAGSPYVSFYKDLMPV*ELVVRK
Trigger: CTTTCTGACAACAAGCTCCAAGACTGGCATGAGGTC...CTTGTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp CCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGGTTTCCCATGATGCTTaGCTGTTGTTGAGGACAAGT +
Preference number: 5 (lower is better)
Translates to: PPKEKHAGNKHPAGSPYVVSHDA*LLLRTS
Trigger: ACTTGTCCTCAACAACAGCAAAGCATCATGGGAAAC...CACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp AAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACAAGACACTGCCATTGAGTTaGGAAACGGAGGGCAATCTG +
Preference number: 5 (lower is better)
Translates to: KHAGNKHPAGSPYVSFYKTLPLS*ETEGNL
Trigger: CAGATTGCCCTCCGTTTCCAAACTCAATGGCAGTGT...CTTGTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp AAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCAGTCTTGGAGCTTGTaGTCAGAAAGATCGAGTTCT +
Preference number: 5 (lower is better)
Translates to: KVLPPKEKHAGNKHPAGSQSWSL*SERSSS
Trigger: AGAACTCGATCTTTCTGACAACAAGCTCCAAGACTG...ACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp AAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTGACCTCATGCCAGTCTaGGAGCTTGTTGTCAGAAAG +
Preference number: 5 (lower is better)
Translates to: KEKHAGNKHPAGSPYVSFDLMPV*ELVVRK
Trigger: CTTTCTGACAACAAGCTCCAAGACTGGCATGAGGTC...AAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp GAAAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGACAGACTCAGAGGATaGGAACTCAGGTTTAGAAAC +
Preference number: 5 (lower is better)
Translates to: EKSFLLKKSTLETNTLQEDRLRG*ELRFRN
Trigger: GTTTCTAAACCTGAGTTCCAATCCTCTGAGTCTGTC...TTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp CCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTGACAGACTCAGAGGATaGGAACTCAGGTTTAGAAAC +
Preference number: 5 (lower is better)
Translates to: PKEKHAGNKHPAGSPYVSDRLRG*ELRFRN
Trigger: GTTTCTAAACCTGAGTTCCAATCCTCTGAGTCTGTC...ACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp GAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACGATGCTTTGCTGTTGTaGAGGACAAGTTTGCGAACC +
Preference number: 5 (lower is better)
Translates to: EKHAGNKHPAGSPYVSFYDALLL*RTSLRT
Trigger: GGTTCGCAAACTTGTCCTCAACAACAGCAAAGCATC...GTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp GAAAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAACATGATGCTTTGCTGTaGTTGAGGACAAGTTTGCGA +
Preference number: 5 (lower is better)
Translates to: EKSFLLKKSTLETNTLQEHDALL*LRTSLR
Trigger: TCGCAAACTTGTCCTCAACAACAGCAAAGCATCATG...TTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp CCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTCATGATGCTTTGCTGTaGTTGAGGACAAGTTTGCGA +
Preference number: 5 (lower is better)
Translates to: PKEKHAGNKHPAGSPYVSHDALL*LRTSLR
Trigger: TCGCAAACTTGTCCTCAACAACAGCAAAGCATCATG...ACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp CCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTGTTTCCCATGATGCTTaGCTGTTGTTGAGGACAAGT +
Preference number: 5 (lower is better)
Translates to: PKEKHAGNKHPAGSPYVSVSHDA*LLLRTS
Trigger: ACTTGTCCTCAACAACAGCAAAGCATCATGGGAAAC...ACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp GAAAAGTCCTTCCTCCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGATTTCAGTCCAGTCTaGGAGGTTGTTGTCTGTGAT +
Preference number: 5 (lower is better)
Translates to: EKSFLLKKSTLETNTLQEDFSPV*EVVVCD
Trigger: ATCACAGACAACAACCTCCAAGACTGGACTGAAATC...TTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGGAGGAAGGACTTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp CCCGATTTAAAACAATCCAGGGTATCTCAACAACCCAAACTAAGAGATCCCTCTCAGCAGGCTCCTCGATaGCATTCAAGTGATTGTTGG +
Preference number: 5 (lower is better)
Translates to: PDLKQSRVSQQPKLRDPSQQAPR*HSSDCW
Trigger: CCAACAATCACTTGAATGCAATCGAGGAGCCTGCTG...AGAGGGATCTCTTAGTTTGGGTTGTTGAGATACCCTGGATTGTTTTAAATCGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp TCAGCCACCCAAGTGAATCTGGAAAGACGCATGCGCAAACGGCTTCCTCATTTACTCACTTCTTCAAGCTaGGGGAATGAATTTAGTTTG +
Preference number: 5 (lower is better)
Translates to: SATQVNLERRMRKRLPHLLTSSS*GNEFSL
Trigger: CAAACTAAATTCATTCCCCAAGCTTGAAGAAGTGAG...TAAATGAGGAAGCCGTTTGCGCATGCGTCTTTCCAGATTCACTTGGGTGGCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp TGGCTCCAAAGTTCAAAAATAAGAGTGCAACTGTTTCCCAGGCTGACAAAGCAAACACTGCCATTGAGTTaGGAAACGGAGGGCAATCTG +
Preference number: 5 (lower is better)
Translates to: WLQSSKIRVQLFPRLTKQTLPLS*ETEGNL
Trigger: CAGATTGCCCTCCGTTTCCAAACTCAATGGCAGTGT...TTGCTTTGTCAGCCTGGGAAACAGTTGCACTCTTATTTTTGAACTTTGGAGCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp AAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTACACTGCCATTGAGTTaGGAAACGGAGGGCAATCTG +
Preference number: 5 (lower is better)
Translates to: KEKHAGNKHPAGSPYVSFTLPLS*ETEGNL
Trigger: CAGATTGCCCTCCGTTTCCAAACTCAATGGCAGTGT...AAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp AGAGTAAAACTACCAGGTAAGTGGGTACAAGTCAGAATGAAAACCAGACCCAGGGACAGACTCAGAGGATaGGAACTCAGGTTTAGAAAC +
Preference number: 5 (lower is better)
Translates to: RVKLPGKWVQVRMKTRPRDRLRG*ELRFRN
Trigger: GTTTCTAAACCTGAGTTCCAATCCTCTGAGTCTGTC...CCTGGGTCTGGTTTTCATTCTGACTTGTACCCACTTACCTGGTAGTTTTACTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp AAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACAAGGATTTCAGTCCAGTCTaGGAGGTTGTTGTCTGTGAT +
Preference number: 5 (lower is better)
Translates to: KHAGNKHPAGSPYVSFYKDFSPV*EVVVCD
Trigger: ATCACAGACAACAACCTCCAAGACTGGACTGAAATC...CTTGTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp CACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTTACAAGGCTGGGAATGAATTTAGTTaGTCAATGTCTTCCCAGGAC +
Preference number: 5 (lower is better)
Translates to: HAGNKHPAGSPYVSFYKAGNEFS*SMSSQD
Trigger: GTCCTGGGAAGACATTGACAAACTAAATTCATTCCC...AGCCTTGTAAAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp CCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTGGGAATGAATTTAGTTaGTCAATGTCTTCCCAGGAC +
Preference number: 5 (lower is better)
Translates to: PKEKHAGNKHPAGSPYVSGNEFS*SMSSQD
Trigger: GTCCTGGGAAGACATTGACAAACTAAATTCATTCCC...ACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS CCA 90 bp ACGGCTGTAGAAGAGGAATTCCTAGCAATCTCACTTCTTCAAGCTTaGGGAATGAATTTAGTTTGTCAATGTCTTCCCAGGACTGCAAAC +
Preference number: 5 (lower is better)
Translates to: TAVEEEFLAISLLQA*GMNLVCQCLPRTAN
Trigger: GTTTGCAGTCCTGGGAAGACATTGACAAACTAAATTCATTCCCCAAGCTTGAAGAAGTGAGATTGCTAGGAATTCCTCTTCTACAGCCGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp AAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTGACAGACTCAGAGGATaGGAACTCAGGTTTAGAAAC +
Preference number: 5 (lower is better)
Translates to: KEKHAGNKHPAGSPYVSFDRLRG*ELRFRN
Trigger: GTTTCTAAACCTGAGTTCCAATCCTCTGAGTCTGTC...AAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp TGGCTCCAAAGTTCAAAAATAAGAGTGCAACTGTTTCCCAGGCTGACAAAGCAACATGATGCTTTGCTGTaGTTGAGGACAAGTTTGCGA +
Preference number: 5 (lower is better)
Translates to: WLQSSKIRVQLFPRLTKQHDALL*LRTSLR
Trigger: TCGCAAACTTGTCCTCAACAACAGCAAAGCATCATG...TTGCTTTGTCAGCCTGGGAAACAGTTGCACTCTTATTTTTGAACTTTGGAGCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp TGGCTCCAAAGTTCAAAAATAAGAGTGCAACTGTTTCCCAGGCTGACAAAGCAAGTTTCCCATGATGCTTaGCTGTTGTTGAGGACAAGT +
Preference number: 5 (lower is better)
Translates to: WLQSSKIRVQLFPRLTKQVSHDA*LLLRTS
Trigger: ACTTGTCCTCAACAACAGCAAAGCATCATGGGAAAC...TTGCTTTGTCAGCCTGGGAAACAGTTGCACTCTTATTTTTGAACTTTGGAGCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp CCTAAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTCTCACTTCTTCAAGCTaGGGGAATGAATTTAGTTTG +
Preference number: 5 (lower is better)
Translates to: PKEKHAGNKHPAGSPYVSLTSSS*GNEFSL
Trigger: CAAACTAAATTCATTCCCCAAGCTTGAAGAAGTGAG...ACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTTAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp AAATGTCTACACAGCACCGATTTTATTTCAAAACCAGCTTCTTTCCTCAGCCACGTTTCCCATGATGCTTaGCTGTTGTTGAGGACAAGT +
Preference number: 5 (lower is better)
Translates to: KCLHSTDFISKPASFLSHVSHDA*LLLRTS
Trigger: ACTTGTCCTCAACAACAGCAAAGCATCATGGGAAAC...GTGGCTGAGGAAAGAAGCTGGTTTTGAAATAAAATCGGTGCTGTGTAGACATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp AAAGAAAAGCACGCTGGAAACAAACACCCTGCAGGAAGTCCTTATGTGAGTTTTGGGAATGAATTTAGTTaGTCAATGTCTTCCCAGGAC +
Preference number: 5 (lower is better)
Translates to: KEKHAGNKHPAGSPYVSFGNEFS*SMSSQD
Trigger: GTCCTGGGAAGACATTGACAAACTAAATTCATTCCC...AAAACTCACATAAGGACTTCCTGCAGGGTGTTTGTTTCCAGCGTGCTTTTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000138506.8
CDS-3UTR CAA 90 bp AGAACAGAACTAAATAGAAACAGCAAGGAAACCATCCAGATTAACAAAGAATGGTTGTTGAGGACAAGTTaGCGAACCCCAGAGAAGGAC +
Preference number: 5 (lower is better)
Translates to: RTELNRNSKETIQINKEWLLRTS*RTPEKD
Trigger: GTCCTTCTCTGGGGTTCGCAAACTTGTCCTCAACAA...CCATTCTTTGTTAATCTGGATGGTTTCCTTGCTGTTTCTATTTAGTTCTGTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp AGAACAGAACTAAATAGAAACAGCAAGGAAACCATCCAGATTAACAAAGAATGGTGCCAGTCTTGGAGCTaGTTGTCAGAAAGATCGAGT +
Preference number: 5 (lower is better)
Translates to: RTELNRNSKETIQINKEWCQSWS*LSERSS
Trigger: ACTCGATCTTTCTGACAACAAGCTCCAAGACTGGCA...CCATTCTTTGTTAATCTGGATGGTTTCCTTGCTGTTTCTATTTAGTTCTGTTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
CDS-3UTR CAA 90 bp AAATGTCTACACAGCACCGATTTTATTTCAAAACCAGCTTCTTTCCTCAGCCACCTCACTTCTTCAAGCTaGGGGAATGAATTTAGTTTG +
Preference number: 5 (lower is better)
Translates to: KCLHSTDFISKPASFLSHLTSSS*GNEFSL
Trigger: CAAACTAAATTCATTCCCCAAGCTTGAAGAAGTGAG...GTGGCTGAGGAAAGAAGCTGGTTTTGAAATAAAATCGGTGCTGTGTAGACATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000066148.12
ENSMUST00000125995.8
CDS CCA 72 bp GAGGCGATCTTTCATAGGCGAGCCCTGGGGAGTGGCTaGGACATGGACTCCCACCCCAGGGCCACGGCGGTA +
Preference number: 6 (lower is better)
Translates to: EAIFHRRALGSG*DMDSHPRATAV
Trigger: TACCGCCGTGGCCCTGGGGTGGGAGTCCATGTCCCAGCCACTCCCCAGGGCTCGCCTATGAAAGATCGCCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000134374.2
ENSMUST00000138506.8
CDS CCA 72 bp CTCGGGAGGTTGAGGCGATCTTTCATAGGCGAGCCCTaGGGAGTGGCTGGGACATGGACTCCCACCCCAGGG +
Preference number: 6 (lower is better)
Translates to: LGRLRRSFIGEP*GVAGTWTPTPG
Trigger: CCCTGGGGTGGGAGTCCATGTCCCAGCCACTCCCCAGGGCTCGCCTATGAAAGATCGCCTCAACCTCCCGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000134374.2
ENSMUST00000138506.8
CDS CAA 72 bp ATGCCGCAGCTGTTCAACACGAGCACGCTCGGGAGGTaGAGGCGATCTTTCATAGGCGAGCCCTGGGGAGTG +
Preference number: 6 (lower is better)
Translates to: MPQLFNTSTLGR*RRSFIGEPWGV
Trigger: CACTCCCCAGGGCTCGCCTATGAAAGATCGCCTCAACCTCCCGAGCGTGCTCGTGTTGAACAGCTGCGGCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000134374.2
ENSMUST00000138506.8
CDS CCA 72 bp GGAGTGCAGTGCCCGGGAGCTGTACTTCATCTCCTCTaGGCCAAACGGGGCCTCGTGGTCAAAGTAGTAGAG +
Preference number: 6 (lower is better)
Translates to: GVQCPGAVLHLL*AKRGLVVKVVE
Trigger: CTCTACTACTTTGACCACGAGGCCCCGTTTGGCCCAGAGGAGATGAAGTACAGCTCCCGGGCACTGCACTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS CAA 72 bp GAATCCTCTCGCTCACCATCCGTCACAACACTGCCATaGAGTTTGGAAACGGAGGGCAATCTGGCCACCACC +
Preference number: 6 (lower is better)
Translates to: ESSRSPSVTTLP*SLETEGNLATT
Trigger: GGTGGTGGCCAGATTGCCCTCCGTTTCCAAACTCAATGGCAGTGTTGTGACGGATGGTGAGCGAGAGGATTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS TCA 72 bp AATCCTCTCGCTCACCATCCGTCACAACACTGCCATTaGGTTTGGAAACGGAGGGCAATCTGGCCACCACCA +
Preference number: 6 (lower is better)
Translates to: NPLAHHPSQHCH*VWKRRAIWPPP
Trigger: TGGTGGTGGCCAGATTGCCCTCCGTTTCCAAACTCAATGGCAGTGTTGTGACGGATGGTGAGCGAGAGGATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS TCA 72 bp GCACTTCCTCCTGAGGAACATCCACGTAGTACCGGATaGAAAACCTCTCGGAATCCTCTCGCTCACCATCCG +
Preference number: 6 (lower is better)
Translates to: ALPPEEHPRSTG*KTSRNPLAHHP
Trigger: CGGATGGTGAGCGAGAGGATTCCGAGAGGTTTTTCATCCGGTACTACGTGGATGTTCCTCAGGAGGAAGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS GCA 72 bp GAACAACCTAGCCAGGGAGTCAGCAGGCTCCTCGATTaGATTCAAGTGATTGTTGGCCAGGACCAGGGTATC +
Preference number: 6 (lower is better)
Translates to: EQPSQGVSRLLD*IQVIVGQDQGI
Trigger: GATACCCTGGTCCTGGCCAACAATCACTTGAATGCAATCGAGGAGCCTGCTGACTCCCTGGCTAGGTTGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS CAA 90 bp AACCTCTCGGAATCCTCTCGCTCACCATCCGTCACAACACTGCCATaGAGTTTGGAAACGGAGGGCAATCTGGCCACCACCAATTTCCTG +
Preference number: 6 (lower is better)
Translates to: NLSESSRSPSVTTLP*SLETEGNLATTNFL
Trigger: CAGGAAATTGGTGGTGGCCAGATTGCCCTCCGTTTCCAAACTCAATGGCAGTGTTGTGACGGATGGTGAGCGAGAGGATTCCGAGAGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS GCA 72 bp AGGCACAGGAAGAGCTCCTCCAACTCTGGCAACTCCTaGAGTATGGTGTGCACTGTTTCCCATGATGCTTTG +
Preference number: 6 (lower is better)
Translates to: RHRKSSSNSGNS*SMVCTVSHDAL
Trigger: CAAAGCATCATGGGAAACAGTGCACACCATACTGCAGGAGTTGCCAGAGTTGGAGGAGCTCTTCCTGTGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS CAA 90 bp TCTGGCAACTCCTGCAGTATGGTGTGCACTGTTTCCCATGATGCTTaGCTGTTGTTGAGGACAAGTTTGCGAACCCCAGAGAAGGACCCA +
Preference number: 6 (lower is better)
Translates to: SGNSCSMVCTVSHDA*LLLRTSLRTPEKDP
Trigger: TGGGTCCTTCTCTGGGGTTCGCAAACTTGTCCTCAACAACAGCAAAGCATCATGGGAAACAGTGCACACCATACTGCAGGAGTTGCCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS GCA 72 bp AGCTCCTCCAACTCTGGCAACTCCTGCAGTATGGTGTaGACTGTTTCCCATGATGCTTTGCTGTTGTTGAGG +
Preference number: 6 (lower is better)
Translates to: SSSNSGNSCSMV*TVSHDALLLLR
Trigger: CCTCAACAACAGCAAAGCATCATGGGAAACAGTGCACACCATACTGCAGGAGTTGCCAGAGTTGGAGGAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS CCA 72 bp GCAATCTGGCCACCACCAATTTCCTGCGTTCCTCGGTaGTATACGGCTGTAGAAGAGGAATTCCTAGCAATC +
Preference number: 6 (lower is better)
Translates to: AIWPPPISCVPR*YTAVEEEFLAI
Trigger: GATTGCTAGGAATTCCTCTTCTACAGCCGTATACCACCGAGGAACGCAGGAAATTGGTGGTGGCCAGATTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS CCA 72 bp AGGGTCTTTAGCTGTTTCTTCAGTTCGGCTACTGTCTaGTCCAGGCGGATGCTCATTTCCTCCACTTGGTCA +
Preference number: 6 (lower is better)
Translates to: RVFSCFFSSATV*SRRMLISSTWS
Trigger: TGACCAAGTGGAGGAAATGAGCATCCGCCTGGACCAGACAGTAGCCGAACTGAAGAAACAGCTAAAGACCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS CAA 90 bp TCCTGCAGTATGGTGTGCACTGTTTCCCATGATGCTTTGCTGTTGTaGAGGACAAGTTTGCGAACCCCAGAGAAGGACCCAGCACATGTT +
Preference number: 6 (lower is better)
Translates to: SCSMVCTVSHDALLL*RTSLRTPEKDPAHV
Trigger: AACATGTGCTGGGTCCTTCTCTGGGGTTCGCAAACTTGTCCTCAACAACAGCAAAGCATCATGGGAAACAGTGCACACCATACTGCAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS CAA 90 bp AACTCCTGCAGTATGGTGTGCACTGTTTCCCATGATGCTTTGCTGTaGTTGAGGACAAGTTTGCGAACCCCAGAGAAGGACCCAGCACAT +
Preference number: 6 (lower is better)
Translates to: NSCSMVCTVSHDALL*LRTSLRTPEKDPAH
Trigger: ATGTGCTGGGTCCTTCTCTGGGGTTCGCAAACTTGTCCTCAACAACAGCAAAGCATCATGGGAAACAGTGCACACCATACTGCAGGAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS TCA 72 bp AGGCGGATGCTCATTTCCTCCACTTGGTCATTGAAGTaGACTTCTACTTTCGCACTGCTCTGGGGTCTTAGG +
Preference number: 6 (lower is better)
Translates to: RRMLISSTWSLK*TSTFALLWGLR
Trigger: CCTAAGACCCCAGAGCAGTGCGAAAGTAGAAGTTCACTTCAATGACCAAGTGGAGGAAATGAGCATCCGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS GCA 72 bp AATTTTATCTCCATCCCTAATGCCAAAGGAGTGCAGTaGCCGGGAGCTGTACTTCATCTCCTCTGGGCCAAA +
Preference number: 6 (lower is better)
Translates to: NFISIPNAKGVQ*PGAVLHLLWAK
Trigger: TTTGGCCCAGAGGAGATGAAGTACAGCTCCCGGGCACTGCACTCCTTTGGCATTAGGGATGGAGATAAAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS CAA 72 bp ATGGTGTGCACTGTTTCCCATGATGCTTTGCTGTTGTaGAGGACAAGTTTGCGAACCCCAGAGAAGGACCCA +
Preference number: 6 (lower is better)
Translates to: MVCTVSHDALLL*RTSLRTPEKDP
Trigger: TGGGTCCTTCTCTGGGGTTCGCAAACTTGTCCTCAACAACAGCAAAGCATCATGGGAAACAGTGCACACCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS CAA 72 bp TCCTGCAGTATGGTGTGCACTGTTTCCCATGATGCTTaGCTGTTGTTGAGGACAAGTTTGCGAACCCCAGAG +
Preference number: 6 (lower is better)
Translates to: SCSMVCTVSHDA*LLLRTSLRTPE
Trigger: CTCTGGGGTTCGCAAACTTGTCCTCAACAACAGCAAAGCATCATGGGAAACAGTGCACACCATACTGCAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS TCA 72 bp TGGAGCTTGTTGTCAGAAAGATCGAGTTCTGACACGTaGGCACAGAAGGCTGCGATTTCTCTTTCATCTCCC +
Preference number: 6 (lower is better)
Translates to: WSLLSERSSSDT*AQKAAISLSSP
Trigger: GGGAGATGAAAGAGAAATCGCAGCCTTCTGTGCTCACGTGTCAGAACTCGATCTTTCTGACAACAAGCTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS GCA 72 bp ACAAAAATTTTATCTCCATCCCTAATGCCAAAGGAGTaGAGTGCCCGGGAGCTGTACTTCATCTCCTCTGGG +
Preference number: 6 (lower is better)
Translates to: TKILSPSLMPKE*SARELYFISSG
Trigger: CCCAGAGGAGATGAAGTACAGCTCCCGGGCACTGCACTCCTTTGGCATTAGGGATGGAGATAAAATTTTTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS CAA 72 bp GTTTCCCATGATGCTTTGCTGTTGTTGAGGACAAGTTaGCGAACCCCAGAGAAGGACCCAGCACATGTTCTT +
Preference number: 6 (lower is better)
Translates to: VSHDALLLLRTS*RTPEKDPAHVL
Trigger: AAGAACATGTGCTGGGTCCTTCTCTGGGGTTCGCAAACTTGTCCTCAACAACAGCAAAGCATCATGGGAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS CAA 72 bp AGTATGGTGTGCACTGTTTCCCATGATGCTTTGCTGTaGTTGAGGACAAGTTTGCGAACCCCAGAGAAGGAC +
Preference number: 6 (lower is better)
Translates to: SMVCTVSHDALL*LRTSLRTPEKD
Trigger: GTCCTTCTCTGGGGTTCGCAAACTTGTCCTCAACAACAGCAAAGCATCATGGGAAACAGTGCACACCATACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS CAA 90 bp GTGTGCACTGTTTCCCATGATGCTTTGCTGTTGTTGAGGACAAGTTaGCGAACCCCAGAGAAGGACCCAGCACATGTTCTTTCTAGAACT +
Preference number: 6 (lower is better)
Translates to: VCTVSHDALLLLRTS*RTPEKDPAHVLSRT
Trigger: AGTTCTAGAAAGAACATGTGCTGGGTCCTTCTCTGGGGTTCGCAAACTTGTCCTCAACAACAGCAAAGCATCATGGGAAACAGTGCACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS TCA 72 bp GAAACTTCTCCCACTAGGCTGGTCCATCTTCTTTTCTaGAAAGTTCAGAGCAGGGCTAGACGCGTTTACTTC +
Preference number: 6 (lower is better)
Translates to: ETSPTRLVHLLF*KVQSRARRVYF
Trigger: GAAGTAAACGCGTCTAGCCCTGCTCTGAACTTTTCAGAAAAGAAGATGGACCAGCCTAGTGGGAGAAGTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066179.14
CDS CCA 72 bp AACATTACACCCAGCTTTCGGATTTCAGTCCAGTCTTaGAGGTTGTTGTCTGTGATGTGTAGGAGCTTGAGG +
Preference number: 6 (lower is better)
Translates to: NITPSFRISVQS*RLLSVMCRSLR
Trigger: CCTCAAGCTCCTACACATCACAGACAACAACCTCCAAGACTGGACTGAAATCCGAAAGCTGGGTGTAATGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS TCA 72 bp ATTCAAGTGATTGTTGGCCAGGACCAGGGTATCCAGTaGAGGAAACATTACACCCAGCTTTCGGATTTCAGT +
Preference number: 6 (lower is better)
Translates to: IQVIVGQDQGIQ*RKHYTQLSDFS
Trigger: ACTGAAATCCGAAAGCTGGGTGTAATGTTTCCTTCACTGGATACCCTGGTCCTGGCCAACAATCACTTGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS CCA 72 bp TCACACAATACTTGCATGAAACTTCTCCCACTAGGCTaGTCCATCTTCTTTTCTGAAAAGTTCAGAGCAGGG +
Preference number: 6 (lower is better)
Translates to: SHNTCMKLLPLG*SIFFSEKFRAG
Trigger: CCCTGCTCTGAACTTTTCAGAAAAGAAGATGGACCAGCCTAGTGGGAGAAGTTTCATGCAAGTATTGTGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066179.14
CDS CAA 90 bp TACGGCTGTAGAAGAGGAATTCCTAGCAATCTCACTTCTTCAAGCTaGGGGAATGAATTTAGTTTGTCAATGTCTTCCCAGGACTGCAAA +
Preference number: 6 (lower is better)
Translates to: YGCRRGIPSNLTSSS*GNEFSLSMSSQDCK
Trigger: TTTGCAGTCCTGGGAAGACATTGACAAACTAAATTCATTCCCCAAGCTTGAAGAAGTGAGATTGCTAGGAATTCCTCTTCTACAGCCGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS CAA 72 bp AATCTCACTTCTTCAAGCTTGGGGAATGAATTTAGTTaGTCAATGTCTTCCCAGGACTGCAAACCTGACTTG +
Preference number: 6 (lower is better)
Translates to: NLTSSSLGNEFS*SMSSQDCKPDL
Trigger: CAAGTCAGGTTTGCAGTCCTGGGAAGACATTGACAAACTAAATTCATTCCCCAAGCTTGAAGAAGTGAGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8
CDS CAA 72 bp AGAAGAGGAATTCCTAGCAATCTCACTTCTTCAAGCTaGGGGAATGAATTTAGTTTGTCAATGTCTTCCCAG +
Preference number: 6 (lower is better)
Translates to: RRGIPSNLTSSS*GNEFSLSMSSQ
Trigger: CTGGGAAGACATTGACAAACTAAATTCATTCCCCAAGCTTGAAGAAGTGAGATTGCTAGGAATTCCTCTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000066148.12
ENSMUST00000066179.14
ENSMUST00000125995.8
ENSMUST00000128959.8
ENSMUST00000138506.8