Pregenerated sensors for TBCC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036430Ensembl transcript IDs: ENSMUST00000040434.9
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | CTCACAGGAGGGGAGTTTCAACAATTTCTAACCCCTATCACCGCAAACATAAGACGTCGGCCAGAGCCATaGAGCAGTCCACACCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: LTGGEFQQFLTPITANIRRRPEP*SSPHPP Trigger: TGGAGGGTGTGGACTGCTCCATGGCTCTGGCCGACG...TCTTATGTTTGCGGTGATAGGGGTTAGAAATTGTTGAAACTCCCCTCCTGTGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR CCA 90 bp | TTAATAGGACTCACAGGAGGGGAGTTTCAACAATTTCTAACCCCTATCACCGCACTCCCTCCTCCTCCTTaGTCACCGGTGGAGAAGGGG | + |
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Preference number: 4 (lower is better) Translates to: LIGLTGGEFQQFLTPITALPPPP*SPVEKG Trigger: CCCCTTCTCCACCGGTGACCAAGGAGGAGGAGGGAG...TGCGGTGATAGGGGTTAGAAATTGTTGAAACTCCCCTCCTGTGAGTCCTATTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR CCA 90 bp | TATGAATTTAATAGGACTCACAGGAGGGGAGTTTCAACAATTTCTAACCCCTATAGCCACAGGCCCAGCTaGCCCCGGGAGCTCCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: YEFNRTHRRGVSTISNPYSHRPS*PRELPP Trigger: AGGAGGGAGCTCCCGGGGCCAGCTGGGCCTGTGGCT...ATAGGGGTTAGAAATTGTTGAAACTCCCCTCCTGTGAGTCCTATTAAATTCATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR GCA 90 bp | ACTCACAGGAGGGGAGTTTCAACAATTTCTAACCCCTATCACCGCAAACATAAGCTCTCCACCTCTATCTaGCTCTCCTGTTCGCGCCTC | + |
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Preference number: 4 (lower is better) Translates to: THRRGVSTISNPYHRKHKLSTSI*LSCSRL Trigger: GAGGCGCGAACAGGAGAGGCAGATAGAGGTGGAGAG...CTTATGTTTGCGGTGATAGGGGTTAGAAATTGTTGAAACTCCCCTCCTGTGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR CCA 90 bp | AGGAGGGGAGTTTCAACAATTTCTAACCCCTATCACCGCAAACATAAGACAATAAGGCGAAGCGCTTCTTaGGCTGCAACTCCTGGCGAC | + |
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Preference number: 4 (lower is better) Translates to: RRGVSTISNPYHRKHKTIRRSAS*AATPGD Trigger: GTCGCCAGGAGTTGCAGCCCAAGAAGCGCTTCGCCT...TATTGTCTTATGTTTGCGGTGATAGGGGTTAGAAATTGTTGAAACTCCCCTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR TCA 90 bp | AGGACTCACAGGAGGGGAGTTTCAACAATTTCTAACCCCTATCACCGCAAACATGATTGCCACACAGTTTaGCAGTGCAGTTGGTCAGGT | + |
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Preference number: 4 (lower is better) Translates to: RTHRRGVSTISNPYHRKHDCHTV*QCSWSG Trigger: ACCTGACCAACTGCACTGTCAAACTGTGTGGCAATC...ATGTTTGCGGTGATAGGGGTTAGAAATTGTTGAAACTCCCCTCCTGTGAGTCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR GCA 90 bp | AGGAGGGGAGTTTCAACAATTTCTAACCCCTATCACCGCAAACATAAGACAATAGCCCTGCTGGTCACTTaGAAGAAGACGCGCGTGTCT | + |
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Preference number: 4 (lower is better) Translates to: RRGVSTISNPYHRKHKTIALLVT*KKTRVS Trigger: AGACACGCGCGTCTTCTTGCAAGTGACCAGCAGGGC...TATTGTCTTATGTTTGCGGTGATAGGGGTTAGAAATTGTTGAAACTCCCCTCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR GCA 90 bp | CACTGCTATGAATTTAATAGGACTCACAGGAGGGGAGTTTCAACAATTTCTAACAAGGGGCAAACTGGATaGCGCTGCAGTCCTCCACGA | + |
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Preference number: 4 (lower is better) Translates to: HCYEFNRTHRRGVSTISNKGQTG*RCSPPR Trigger: TCGTGGAGGACTGCAGCGGCATCCAGTTTGCCCCTT...GTTAGAAATTGTTGAAACTCCCCTCCTGTGAGTCCTATTAAATTCATAGCAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR TCA 90 bp | AGGGGAGTTTCAACAATTTCTAACCCCTATCACCGCAAACATAAGACAATATCATTCGGGCCAGCCAGTTaGAATCATCAACCTGGTCCC | + |
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Preference number: 4 (lower is better) Translates to: RGVSTISNPYHRKHKTISFGPAS*NHQPGP Trigger: GGGACCAGGTTGATGATTTCAACTGGCTGGCCCGAA...TGATATTGTCTTATGTTTGCGGTGATAGGGGTTAGAAATTGTTGAAACTCCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR GCA 90 bp | CACTGCTATGAATTTAATAGGACTCACAGGAGGGGAGTTTCAACAATTTCTAACCCTGCCGCTTCTGCTTaGGTCTCTCCACCTCTATCT | + |
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Preference number: 4 (lower is better) Translates to: HCYEFNRTHRRGVSTISNPAASA*VSPPLS Trigger: AGATAGAGGTGGAGAGACGCAAGCAGAAGCGGCAGG...GTTAGAAATTGTTGAAACTCCCCTCCTGTGAGTCCTATTAAATTCATAGCAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR CCA 90 bp | TATGAATTTAATAGGACTCACAGGAGGGGAGTTTCAACAATTTCTAACCCCTATCCAGAAACACAGAGGTaGTCACTGGGCCGCAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: YEFNRTHRRGVSTISNPYPETQR*SLGRRA Trigger: TGCTCTGCGGCCCAGTGACCACCTCTGTGTTTCTGG...ATAGGGGTTAGAAATTGTTGAAACTCCCCTCCTGTGAGTCCTATTAAATTCATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR CCA 90 bp | GAATTTAATAGGACTCACAGGAGGGGAGTTTCAACAATTTCTAACCCCTATCACTCTAAACCGGAGTCCTaGAAGTCCTTGTCGATCCCC | + |
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Preference number: 4 (lower is better) Translates to: EFNRTHRRGVSTISNPYHSKPES*KSLSIP Trigger: GGGGATCGACAAGGACTTCCAGGACTCCGGTTTAGA...GTGATAGGGGTTAGAAATTGTTGAAACTCCCCTCCTGTGAGTCCTATTAAATTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR CCA 90 bp | AGGAGGGGAGTTTCAACAATTTCTAACCCCTATCACCGCAAACATAAGACAATAAAGAATACTCCAGTTTaGGGAGGCCACGTTTCGGGC | + |
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Preference number: 4 (lower is better) Translates to: RRGVSTISNPYHRKHKTIKNTPV*GGHVSG Trigger: GCCCGAAACGTGGCCTCCCCAAACTGGAGTATTCTT...TATTGTCTTATGTTTGCGGTGATAGGGGTTAGAAATTGTTGAAACTCCCCTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR GCA 90 bp | GAATTTAATAGGACTCACAGGAGGGGAGTTTCAACAATTTCTAACCCCTATCACGGTCCCAGTTATTTTTaGTCCTATCTAAACCGGAGT | + |
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Preference number: 4 (lower is better) Translates to: EFNRTHRRGVSTISNPYHGPSYF*SYLNRS Trigger: ACTCCGGTTTAGATAGGAGCAAAAATAACTGGGACC...GTGATAGGGGTTAGAAATTGTTGAAACTCCCCTCCTGTGAGTCCTATTAAATTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR CCA 90 bp | GAATTTAATAGGACTCACAGGAGGGGAGTTTCAACAATTTCTAACCCCTATCACTTGAAATCATCAACCTaGTCCCAGTTATTTTTGCTC | + |
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Preference number: 4 (lower is better) Translates to: EFNRTHRRGVSTISNPYHLKSST*SQLFLL Trigger: GAGCAAAAATAACTGGGACCAGGTTGATGATTTCAA...GTGATAGGGGTTAGAAATTGTTGAAACTCCCCTCCTGTGAGTCCTATTAAATTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CCA 90 bp | GGCCCAGCTGGCCCCGGGAGCTCCCTCCTCCTCCTTGGTCACCGGTaGAGAAGGGGCCGCCGAGGCGACGGGTGCGGCGTCTACCTGGGC | + |
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Preference number: 5 (lower is better) Translates to: GPAGPGSSLLLLGHR*RRGRRGDGCGVYLG Trigger: GCCCAGGTAGACGCCGCACCCGTCGCCTCGGCGGCCCCTTCTCCACCGGTGACCAAGGAGGAGGAGGGAGCTCCCGGGGCCAGCTGGGCC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CCA 90 bp | AGAAGCCACAGGCCCAGCTGGCCCCGGGAGCTCCCTCCTCCTCCTTaGTCACCGGTGGAGAAGGGGCCGCCGAGGCGACGGGTGCGGCGT | + |
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Preference number: 5 (lower is better) Translates to: RSHRPSWPRELPPPP*SPVEKGPPRRRVRR Trigger: ACGCCGCACCCGTCGCCTCGGCGGCCCCTTCTCCACCGGTGACCAAGGAGGAGGAGGGAGCTCCCGGGGCCAGCTGGGCCTGTGGCTTCT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CCA 90 bp | AGAGCACCGAGTCGTTCAGGAGCTTCCGCAGGCCCTGGAGCCGGTTaGCCGCCTCTTCCAGCCGCTCCGCCGACGCCTCGCCCCGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: RAPSRSGASAGPGAG*PPLPAAPPTPRPAA Trigger: TGCTGCGGGGCGAGGCGTCGGCGGAGCGGCTGGAAGAGGCGGCCAACCGGCTCCAGGGCCTGCGGAAGCTCCTGAACGACTCGGTGCTCT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CCA 90 bp | GCGGCGAGGAAGAGCACCGAGTCGTTCAGGAGCTTCCGCAGGCCCTaGAGCCGGTTGGCCGCCTCTTCCAGCCGCTCCGCCGACGCCTCG | + |
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Preference number: 5 (lower is better) Translates to: AARKSTESFRSFRRP*SRLAASSSRSADAS Trigger: CGAGGCGTCGGCGGAGCGGCTGGAAGAGGCGGCCAACCGGCTCCAGGGCCTGCGGAAGCTCCTGAACGACTCGGTGCTCTTCCTCGCCGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS TCA 90 bp | CGGCGTCTACCTGGGCGGTCCCCGCAGCATCCTTCTTCCGTGCCTTaGAGGCGAAGCGCTTCTTGGGCTGCAACTCCTGGCGACGTTCCG | + |
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Preference number: 5 (lower is better) Translates to: RRLPGRSPQHPSSVP*RRSASWAATPGDVP Trigger: CGGAACGTCGCCAGGAGTTGCAGCCCAAGAAGCGCTTCGCCTTCAAGGCACGGAAGAAGGATGCTGCGGGGACCGCCCAGGTAGACGCCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CCA 90 bp | TTCTTCCGTGCCTTGAAGGCGAAGCGCTTCTTGGGCTGCAACTCCTaGCGACGTTCCGTTAGGACAGCCTGCAGCTGCGCCAACGCCGCC | + |
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Preference number: 5 (lower is better) Translates to: FFRALKAKRFLGCNS*RRSVRTACSCANAA Trigger: GGCGGCGTTGGCGCAGCTGCAGGCTGTCCTAACGGAACGTCGCCAGGAGTTGCAGCCCAAGAAGCGCTTCGCCTTCAAGGCACGGAAGAA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS GCA 90 bp | GCAGCATCCTTCTTCCGTGCCTTGAAGGCGAAGCGCTTCTTGGGCTaGAACTCCTGGCGACGTTCCGTTAGGACAGCCTGCAGCTGCGCC | + |
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Preference number: 5 (lower is better) Translates to: AASFFRALKAKRFLG*NSWRRSVRTACSCA Trigger: GGCGCAGCTGCAGGCTGTCCTAACGGAACGTCGCCAGGAGTTGCAGCCCAAGAAGCGCTTCGCCTTCAAGGCACGGAAGAAGGATGCTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS GCA 90 bp | AATCCTCCAGAAACACAGAGGTGGTCACTGGGCCGCAGAGCACCTTaGAGCCGCGGGCCTTCGCAAGCCGCAAGGTGTTGGGATTGCCAC | + |
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Preference number: 5 (lower is better) Translates to: NPPETQRWSLGRRAP*SRGPSQAARCWDCH Trigger: GTGGCAATCCCAACACCTTGCGGCTTGCGAAGGCCCGCGGCTGCAAGGTGCTCTGCGGCCCAGTGACCACCTCTGTGTTTCTGGAGGATT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CCA 90 bp | CAGGACGCAATCTCGACAATCCTCCAGAAACACAGAGGTGGTCACTaGGCCGCAGAGCACCTTGCAGCCGCGGGCCTTCGCAAGCCGCAA | + |
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Preference number: 5 (lower is better) Translates to: QDAISTILQKHRGGH*AAEHLAAAGLRKPQ Trigger: TTGCGGCTTGCGAAGGCCCGCGGCTGCAAGGTGCTCTGCGGCCCAGTGACCACCTCTGTGTTTCTGGAGGATTGTCGAGATTGCGTCCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CCA 90 bp | CCACAGCCAGGACGCAATCTCGACAATCCTCCAGAAACACAGAGGTaGTCACTGGGCCGCAGAGCACCTTGCAGCCGCGGGCCTTCGCAA | + |
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Preference number: 5 (lower is better) Translates to: PQPGRNLDNPPETQR*SLGRRAPCSRGPSQ Trigger: TTGCGAAGGCCCGCGGCTGCAAGGTGCTCTGCGGCCCAGTGACCACCTCTGTGTTTCTGGAGGATTGTCGAGATTGCGTCCTGGCTGTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS TCA 90 bp | CGCGGGCCTTCGCAAGCCGCAAGGTGTTGGGATTGCCACACAGTTTaGCAGTGCAGTTGGTCAGGTCGCTCAAAAGGACGTCGCGCTGGT | + |
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Preference number: 5 (lower is better) Translates to: RGPSQAARCWDCHTV*QCSWSGRSKGRRAG Trigger: ACCAGCGCGACGTCCTTTTGAGCGACCTGACCAACTGCACTGTCAAACTGTGTGGCAATCCCAACACCTTGCGGCTTGCGAAGGCCCGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS GCA 90 bp | AACTGGATGCCGCTGCAGTCCTCCACGATAGCCCTGCTGGTCACTTaGAAGAAGACGCGCGTGTCTTTGGTAGTGTGCACACGGAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: NWMPLQSSTIALLVT*KKTRVSLVVCTRSC Trigger: GCAGCTCCGTGTGCACACTACCAAAGACACGCGCGTCTTCTTGCAAGTGACCAGCAGGGCTATCGTGGAGGACTGCAGCGGCATCCAGTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR CAA 90 bp | TTAATAGGACTCACAGGAGGGGAGTTTCAACAATTTCTAACCCCTATCACCGCAGGGCCGCAGAGCACCTaGCAGCCGCGGGCCTTCGCA | + |
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Preference number: 5 (lower is better) Translates to: LIGLTGGEFQQFLTPITAGPQST*QPRAFA Trigger: TGCGAAGGCCCGCGGCTGCAAGGTGCTCTGCGGCCC...TGCGGTGATAGGGGTTAGAAATTGTTGAAACTCCCCTCCTGTGAGTCCTATTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR CAA 90 bp | AGGAGGGGAGTTTCAACAATTTCTAACCCCTATCACCGCAAACATAAGACAATAAGGCCCTGGAGCCGGTaGGCCGCCTCTTCCAGCCGC | + |
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Preference number: 5 (lower is better) Translates to: RRGVSTISNPYHRKHKTIRPWSR*AASSSR Trigger: GCGGCTGGAAGAGGCGGCCAACCGGCTCCAGGGCCT...TATTGTCTTATGTTTGCGGTGATAGGGGTTAGAAATTGTTGAAACTCCCCTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR CAA 90 bp | TTTAATAGGACTCACAGGAGGGGAGTTTCAACAATTTCTAACCCCTATCACCGCGCTCCCTCCTCCTCCTaGGTCACCGGTGGAGAAGGG | + |
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Preference number: 5 (lower is better) Translates to: FNRTHRRGVSTISNPYHRAPSSS*VTGGEG Trigger: CCCTTCTCCACCGGTGACCAAGGAGGAGGAGGGAGC...GCGGTGATAGGGGTTAGAAATTGTTGAAACTCCCCTCCTGTGAGTCCTATTAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CCA 90 bp | ATCCCACTGGATGTCTCTCTCCTCTTCAGGAAGAATACTCCAGTTTaGGGAGGCCACGTTTCGGGCCAGCCAGTTGAAATCATCAACCTG | + |
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Preference number: 5 (lower is better) Translates to: IPLDVSLLFRKNTPV*GGHVSGQPVEIINL Trigger: CAGGTTGATGATTTCAACTGGCTGGCCCGAAACGTGGCCTCCCCAAACTGGAGTATTCTTCCTGAAGAGGAGAGAGACATCCAGTGGGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR CAA 90 bp | AGGACTCACAGGAGGGGAGTTTCAACAATTTCTAACCCCTATCACCGCAAACATAGCCCTGCTGGTCACTaGCAAGAAGACGCGCGTGTC | + |
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Preference number: 5 (lower is better) Translates to: RTHRRGVSTISNPYHRKHSPAGH*QEDARV Trigger: GACACGCGCGTCTTCTTGCAAGTGACCAGCAGGGCT...ATGTTTGCGGTGATAGGGGTTAGAAATTGTTGAAACTCCCCTCCTGTGAGTCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CCA 90 bp | TTTGGGGAGGCCACGTTTCGGGCCAGCCAGTTGAAATCATCAACCTaGTCCCAGTTATTTTTGCTCCTATCTAAACCGGAGTCCTGGAAG | + |
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Preference number: 5 (lower is better) Translates to: FGEATFRASQLKSST*SQLFLLLSKPESWK Trigger: CTTCCAGGACTCCGGTTTAGATAGGAGCAAAAATAACTGGGACCAGGTTGATGATTTCAACTGGCTGGCCCGAAACGTGGCCTCCCCAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR CAA 90 bp | ACTCACAGGAGGGGAGTTTCAACAATTTCTAACCCCTATCACCGCAAACATAAGAAGGCGAAGCGCTTCTaGGGCTGCAACTCCTGGCGA | + |
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Preference number: 5 (lower is better) Translates to: THRRGVSTISNPYHRKHKKAKRF*GCNSWR Trigger: TCGCCAGGAGTTGCAGCCCAAGAAGCGCTTCGCCTT...CTTATGTTTGCGGTGATAGGGGTTAGAAATTGTTGAAACTCCCCTCCTGTGAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR CAA 90 bp | ATAGGACTCACAGGAGGGGAGTTTCAACAATTTCTAACCCCTATCACCGCAAACCGCAAGGTGTTGGGATaGCCACACAGTTTGACAGTG | + |
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Preference number: 5 (lower is better) Translates to: IGLTGGEFQQFLTPITANRKVLG*PHSLTV Trigger: CACTGTCAAACTGTGTGGCAATCCCAACACCTTGCG...GTTTGCGGTGATAGGGGTTAGAAATTGTTGAAACTCCCCTCCTGTGAGTCCTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR CAA 90 bp | TTAATAGGACTCACAGGAGGGGAGTTTCAACAATTTCTAACCCCTATCACCGCAGCAAGCCGCAAGGTGTaGGGATTGCCACACAGTTTG | + |
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Preference number: 5 (lower is better) Translates to: LIGLTGGEFQQFLTPITAASRKV*GLPHSL Trigger: CAAACTGTGTGGCAATCCCAACACCTTGCGGCTTGC...TGCGGTGATAGGGGTTAGAAATTGTTGAAACTCCCCTCCTGTGAGTCCTATTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR CAA 90 bp | ACTCACAGGAGGGGAGTTTCAACAATTTCTAACCCCTATCACCGCAAACATAAGGAAGAATACTCCAGTTaGGGGAGGCCACGTTTCGGG | + |
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Preference number: 5 (lower is better) Translates to: THRRGVSTISNPYHRKHKEEYSS*GRPRFG Trigger: CCCGAAACGTGGCCTCCCCAAACTGGAGTATTCTTC...CTTATGTTTGCGGTGATAGGGGTTAGAAATTGTTGAAACTCCCCTCCTGTGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS TCA 90 bp | GAAGAATACTCCAGTTTGGGGAGGCCACGTTTCGGGCCAGCCAGTTaGAATCATCAACCTGGTCCCAGTTATTTTTGCTCCTATCTAAAC | + |
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Preference number: 5 (lower is better) Translates to: EEYSSLGRPRFGPAS*NHQPGPSYFCSYLN Trigger: GTTTAGATAGGAGCAAAAATAACTGGGACCAGGTTGATGATTTCAACTGGCTGGCCCGAAACGTGGCCTCCCCAAACTGGAGTATTCTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR CAA 90 bp | AGGAGGGGAGTTTCAACAATTTCTAACCCCTATCACCGCAAACATAAGACAATAGGATTGCCACACAGTTaGACAGTGCAGTTGGTCAGG | + |
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Preference number: 5 (lower is better) Translates to: RRGVSTISNPYHRKHKTIGLPHS*TVQLVR Trigger: CCTGACCAACTGCACTGTCAAACTGTGTGGCAATCC...TATTGTCTTATGTTTGCGGTGATAGGGGTTAGAAATTGTTGAAACTCCCCTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS-3UTR CAA 90 bp | TATGAATTTAATAGGACTCACAGGAGGGGAGTTTCAACAATTTCTAACCCCTATTGGTCCCAGTTATTTTaGCTCCTATCTAAACCGGAG | + |
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Preference number: 5 (lower is better) Translates to: YEFNRTHRRGVSTISNPYWSQLF*LLSKPE Trigger: CTCCGGTTTAGATAGGAGCAAAAATAACTGGGACCA...ATAGGGGTTAGAAATTGTTGAAACTCCCCTCCTGTGAGTCCTATTAAATTCATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 90 bp | GAGAAGCCACAGGCCCAGCTGGCCCCGGGAGCTCCCTCCTCCTCCTaGGTCACCGGTGGAGAAGGGGCCGCCGAGGCGACGGGTGCGGCG | + |
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Preference number: 6 (lower is better) Translates to: EKPQAQLAPGAPSSS*VTGGEGAAEATGAA Trigger: CGCCGCACCCGTCGCCTCGGCGGCCCCTTCTCCACCGGTGACCAAGGAGGAGGAGGGAGCTCCCGGGGCCAGCTGGGCCTGTGGCTTCTC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 90 bp | AAGAGCACCGAGTCGTTCAGGAGCTTCCGCAGGCCCTGGAGCCGGTaGGCCGCCTCTTCCAGCCGCTCCGCCGACGCCTCGCCCCGCAGC | + |
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Preference number: 6 (lower is better) Translates to: KSTESFRSFRRPWSR*AASSSRSADASPRS Trigger: GCTGCGGGGCGAGGCGTCGGCGGAGCGGCTGGAAGAGGCGGCCAACCGGCTCCAGGGCCTGCGGAAGCTCCTGAACGACTCGGTGCTCTT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CCA 72 bp | AGTCGTTCAGGAGCTTCCGCAGGCCCTGGAGCCGGTTaGCCGCCTCTTCCAGCCGCTCCGCCGACGCCTCGC | + |
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Preference number: 6 (lower is better) Translates to: SRSGASAGPGAG*PPLPAAPPTPR Trigger: GCGAGGCGTCGGCGGAGCGGCTGGAAGAGGCGGCCAACCGGCTCCAGGGCCTGCGGAAGCTCCTGAACGACT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS GCA 72 bp | GGCTGCAACTCCTGGCGACGTTCCGTTAGGACAGCCTaGAGCTGCGCCAACGCCGCCTGGCCCTGCCGCAGG | + |
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Preference number: 6 (lower is better) Translates to: GCNSWRRSVRTA*SCANAAWPCRR Trigger: CCTGCGGCAGGGCCAGGCGGCGTTGGCGCAGCTGCAGGCTGTCCTAACGGAACGTCGCCAGGAGTTGCAGCC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CCA 72 bp | AAGAGCACCGAGTCGTTCAGGAGCTTCCGCAGGCCCTaGAGCCGGTTGGCCGCCTCTTCCAGCCGCTCCGCC | + |
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Preference number: 6 (lower is better) Translates to: KSTESFRSFRRP*SRLAASSSRSA Trigger: GGCGGAGCGGCTGGAAGAGGCGGCCAACCGGCTCCAGGGCCTGCGGAAGCTCCTGAACGACTCGGTGCTCTT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 90 bp | GCGGCGTCTACCTGGGCGGTCCCCGCAGCATCCTTCTTCCGTGCCTaGAAGGCGAAGCGCTTCTTGGGCTGCAACTCCTGGCGACGTTCC | + |
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Preference number: 6 (lower is better) Translates to: AASTWAVPAASFFRA*KAKRFLGCNSWRRS Trigger: GGAACGTCGCCAGGAGTTGCAGCCCAAGAAGCGCTTCGCCTTCAAGGCACGGAAGAAGGATGCTGCGGGGACCGCCCAGGTAGACGCCGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS TCA 72 bp | CCTGGGCGGTCCCCGCAGCATCCTTCTTCCGTGCCTTaGAGGCGAAGCGCTTCTTGGGCTGCAACTCCTGGC | + |
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Preference number: 6 (lower is better) Translates to: PGRSPQHPSSVP*RRSASWAATPG Trigger: GCCAGGAGTTGCAGCCCAAGAAGCGCTTCGCCTTCAAGGCACGGAAGAAGGATGCTGCGGGGACCGCCCAGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CCA 72 bp | GCCTTGAAGGCGAAGCGCTTCTTGGGCTGCAACTCCTaGCGACGTTCCGTTAGGACAGCCTGCAGCTGCGCC | + |
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Preference number: 6 (lower is better) Translates to: ALKAKRFLGCNS*RRSVRTACSCA Trigger: GGCGCAGCTGCAGGCTGTCCTAACGGAACGTCGCCAGGAGTTGCAGCCCAAGAAGCGCTTCGCCTTCAAGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 72 bp | ACCTGGGCGGTCCCCGCAGCATCCTTCTTCCGTGCCTaGAAGGCGAAGCGCTTCTTGGGCTGCAACTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: TWAVPAASFFRA*KAKRFLGCNSW Trigger: CCAGGAGTTGCAGCCCAAGAAGCGCTTCGCCTTCAAGGCACGGAAGAAGGATGCTGCGGGGACCGCCCAGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 72 bp | AGAAACACAGAGGTGGTCACTGGGCCGCAGAGCACCTaGCAGCCGCGGGCCTTCGCAAGCCGCAAGGTGTTG | + |
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Preference number: 6 (lower is better) Translates to: RNTEVVTGPQST*QPRAFASRKVL Trigger: CAACACCTTGCGGCTTGCGAAGGCCCGCGGCTGCAAGGTGCTCTGCGGCCCAGTGACCACCTCTGTGTTTCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 90 bp | GTCCCCGCAGCATCCTTCTTCCGTGCCTTGAAGGCGAAGCGCTTCTaGGGCTGCAACTCCTGGCGACGTTCCGTTAGGACAGCCTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: VPAASFFRALKAKRF*GCNSWRRSVRTACS Trigger: GCTGCAGGCTGTCCTAACGGAACGTCGCCAGGAGTTGCAGCCCAAGAAGCGCTTCGCCTTCAAGGCACGGAAGAAGGATGCTGCGGGGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 90 bp | CCGCAGAGCACCTTGCAGCCGCGGGCCTTCGCAAGCCGCAAGGTGTaGGGATTGCCACACAGTTTGACAGTGCAGTTGGTCAGGTCGCTC | + |
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Preference number: 6 (lower is better) Translates to: PQSTLQPRAFASRKV*GLPHSLTVQLVRSL Trigger: GAGCGACCTGACCAACTGCACTGTCAAACTGTGTGGCAATCCCAACACCTTGCGGCTTGCGAAGGCCCGCGGCTGCAAGGTGCTCTGCGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 90 bp | CAATCCTCCAGAAACACAGAGGTGGTCACTGGGCCGCAGAGCACCTaGCAGCCGCGGGCCTTCGCAAGCCGCAAGGTGTTGGGATTGCCA | + |
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Preference number: 6 (lower is better) Translates to: QSSRNTEVVTGPQST*QPRAFASRKVLGLP Trigger: TGGCAATCCCAACACCTTGCGGCTTGCGAAGGCCCGCGGCTGCAAGGTGCTCTGCGGCCCAGTGACCACCTCTGTGTTTCTGGAGGATTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CCA 72 bp | ATCTCGACAATCCTCCAGAAACACAGAGGTGGTCACTaGGCCGCAGAGCACCTTGCAGCCGCGGGCCTTCGC | + |
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Preference number: 6 (lower is better) Translates to: ISTILQKHRGGH*AAEHLAAAGLR Trigger: GCGAAGGCCCGCGGCTGCAAGGTGCTCTGCGGCCCAGTGACCACCTCTGTGTTTCTGGAGGATTGTCGAGAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CCA 72 bp | GGACGCAATCTCGACAATCCTCCAGAAACACAGAGGTaGTCACTGGGCCGCAGAGCACCTTGCAGCCGCGGG | + |
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Preference number: 6 (lower is better) Translates to: GRNLDNPPETQR*SLGRRAPCSRG Trigger: CCCGCGGCTGCAAGGTGCTCTGCGGCCCAGTGACCACCTCTGTGTTTCTGGAGGATTGTCGAGATTGCGTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 90 bp | CCGCGGGCCTTCGCAAGCCGCAAGGTGTTGGGATTGCCACACAGTTaGACAGTGCAGTTGGTCAGGTCGCTCAAAAGGACGTCGCGCTGG | + |
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Preference number: 6 (lower is better) Translates to: PRAFASRKVLGLPHS*TVQLVRSLKRTSRW Trigger: CCAGCGCGACGTCCTTTTGAGCGACCTGACCAACTGCACTGTCAAACTGTGTGGCAATCCCAACACCTTGCGGCTTGCGAAGGCCCGCGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 72 bp | CAGCCGCGGGCCTTCGCAAGCCGCAAGGTGTTGGGATaGCCACACAGTTTGACAGTGCAGTTGGTCAGGTCG | + |
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Preference number: 6 (lower is better) Translates to: QPRAFASRKVLG*PHSLTVQLVRS Trigger: CGACCTGACCAACTGCACTGTCAAACTGTGTGGCAATCCCAACACCTTGCGGCTTGCGAAGGCCCGCGGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 90 bp | TCCACGATAGCCCTGCTGGTCACTTGCAAGAAGACGCGCGTGTCTTaGGTAGTGTGCACACGGAGCTGCTGGCAAGCCACAGCCAGGACG | + |
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Preference number: 6 (lower is better) Translates to: STIALLVTCKKTRVS*VVCTRSCWQATART Trigger: CGTCCTGGCTGTGGCTTGCCAGCAGCTCCGTGTGCACACTACCAAAGACACGCGCGTCTTCTTGCAAGTGACCAGCAGGGCTATCGTGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS GCA 72 bp | TTCTTCCGTGCCTTGAAGGCGAAGCGCTTCTTGGGCTaGAACTCCTGGCGACGTTCCGTTAGGACAGCCTGC | + |
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Preference number: 6 (lower is better) Translates to: FFRALKAKRFLG*NSWRRSVRTAC Trigger: GCAGGCTGTCCTAACGGAACGTCGCCAGGAGTTGCAGCCCAAGAAGCGCTTCGCCTTCAAGGCACGGAAGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS GCA 72 bp | GTCACTTGCAAGAAGACGCGCGTGTCTTTGGTAGTGTaGACACGGAGCTGCTGGCAAGCCACAGCCAGGACG | + |
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Preference number: 6 (lower is better) Translates to: VTCKKTRVSLVV*TRSCWQATART Trigger: CGTCCTGGCTGTGGCTTGCCAGCAGCTCCGTGTGCACACTACCAAAGACACGCGCGTCTTCTTGCAAGTGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 72 bp | GCCCTGCTGGTCACTTGCAAGAAGACGCGCGTGTCTTaGGTAGTGTGCACACGGAGCTGCTGGCAAGCCACA | + |
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Preference number: 6 (lower is better) Translates to: ALLVTCKKTRVS*VVCTRSCWQAT Trigger: TGTGGCTTGCCAGCAGCTCCGTGTGCACACTACCAAAGACACGCGCGTCTTCTTGCAAGTGACCAGCAGGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 72 bp | GCCGCTGCAGTCCTCCACGATAGCCCTGCTGGTCACTaGCAAGAAGACGCGCGTGTCTTTGGTAGTGTGCAC | + |
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Preference number: 6 (lower is better) Translates to: AAAVLHDSPAGH*QEDARVFGSVH Trigger: GTGCACACTACCAAAGACACGCGCGTCTTCTTGCAAGTGACCAGCAGGGCTATCGTGGAGGACTGCAGCGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 90 bp | AGCACCTTGCAGCCGCGGGCCTTCGCAAGCCGCAAGGTGTTGGGATaGCCACACAGTTTGACAGTGCAGTTGGTCAGGTCGCTCAAAAGG | + |
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Preference number: 6 (lower is better) Translates to: STLQPRAFASRKVLG*PHSLTVQLVRSLKR Trigger: CCTTTTGAGCGACCTGACCAACTGCACTGTCAAACTGTGTGGCAATCCCAACACCTTGCGGCTTGCGAAGGCCCGCGGCTGCAAGGTGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 90 bp | AAACTGGATGCCGCTGCAGTCCTCCACGATAGCCCTGCTGGTCACTaGCAAGAAGACGCGCGTGTCTTTGGTAGTGTGCACACGGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: KLDAAAVLHDSPAGH*QEDARVFGSVHTEL Trigger: CAGCTCCGTGTGCACACTACCAAAGACACGCGCGTCTTCTTGCAAGTGACCAGCAGGGCTATCGTGGAGGACTGCAGCGGCATCCAGTTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS GCA 72 bp | CAGTTGGTCAGGTCGCTCAAAAGGACGTCGCGCTGGTaGAGCTCTTCAGCTCTCTTCTCCAGGTCTTGGGAC | + |
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Preference number: 6 (lower is better) Translates to: QLVRSLKRTSRW*SSSALFSRSWD Trigger: GTCCCAAGACCTGGAGAAGAGAGCTGAAGAGCTGCACCAGCGCGACGTCCTTTTGAGCGACCTGACCAACTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS GCA 72 bp | AAGACGCGCGTGTCTTTGGTAGTGTGCACACGGAGCTaGTGGCAAGCCACAGCCAGGACGCAATCTCGACAA | + |
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Preference number: 6 (lower is better) Translates to: KTRVSLVVCTRS*WQATARTQSRQ Trigger: TTGTCGAGATTGCGTCCTGGCTGTGGCTTGCCAGCAGCTCCGTGTGCACACTACCAAAGACACGCGCGTCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS GCA 72 bp | CCGCTGCAGTCCTCCACGATAGCCCTGCTGGTCACTTaGAAGAAGACGCGCGTGTCTTTGGTAGTGTGCACA | + |
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Preference number: 6 (lower is better) Translates to: PLQSSTIALLVT*KKTRVSLVVCT Trigger: TGTGCACACTACCAAAGACACGCGCGTCTTCTTGCAAGTGACCAGCAGGGCTATCGTGGAGGACTGCAGCGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 72 bp | GCATCCTTCTTCCGTGCCTTGAAGGCGAAGCGCTTCTaGGGCTGCAACTCCTGGCGACGTTCCGTTAGGACA | + |
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Preference number: 6 (lower is better) Translates to: ASFFRALKAKRF*GCNSWRRSVRT Trigger: TGTCCTAACGGAACGTCGCCAGGAGTTGCAGCCCAAGAAGCGCTTCGCCTTCAAGGCACGGAAGAAGGATGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 90 bp | GCAAGCCGCAAGGTGTTGGGATTGCCACACAGTTTGACAGTGCAGTaGGTCAGGTCGCTCAAAAGGACGTCGCGCTGGTGCAGCTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: ASRKVLGLPHSLTVQ*VRSLKRTSRWCSSS Trigger: TGAAGAGCTGCACCAGCGCGACGTCCTTTTGAGCGACCTGACCAACTGCACTGTCAAACTGTGTGGCAATCCCAACACCTTGCGGCTTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 72 bp | AAGGTGTTGGGATTGCCACACAGTTTGACAGTGCAGTaGGTCAGGTCGCTCAAAAGGACGTCGCGCTGGTGC | + |
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Preference number: 6 (lower is better) Translates to: KVLGLPHSLTVQ*VRSLKRTSRWC Trigger: GCACCAGCGCGACGTCCTTTTGAGCGACCTGACCAACTGCACTGTCAAACTGTGTGGCAATCCCAACACCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS TCA 72 bp | TCGCAAGCCGCAAGGTGTTGGGATTGCCACACAGTTTaGCAGTGCAGTTGGTCAGGTCGCTCAAAAGGACGT | + |
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Preference number: 6 (lower is better) Translates to: SQAARCWDCHTV*QCSWSGRSKGR Trigger: ACGTCCTTTTGAGCGACCTGACCAACTGCACTGTCAAACTGTGTGGCAATCCCAACACCTTGCGGCTTGCGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 72 bp | TTCGCAAGCCGCAAGGTGTTGGGATTGCCACACAGTTaGACAGTGCAGTTGGTCAGGTCGCTCAAAAGGACG | + |
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Preference number: 6 (lower is better) Translates to: FASRKVLGLPHS*TVQLVRSLKRT Trigger: CGTCCTTTTGAGCGACCTGACCAACTGCACTGTCAAACTGTGTGGCAATCCCAACACCTTGCGGCTTGCGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS TCA 72 bp | TCCAGTTTGGGGAGGCCACGTTTCGGGCCAGCCAGTTaGAATCATCAACCTGGTCCCAGTTATTTTTGCTCC | + |
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Preference number: 6 (lower is better) Translates to: SSLGRPRFGPAS*NHQPGPSYFCS Trigger: GGAGCAAAAATAACTGGGACCAGGTTGATGATTTCAACTGGCTGGCCCGAAACGTGGCCTCCCCAAACTGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CCA 72 bp | GATGTCTCTCTCCTCTTCAGGAAGAATACTCCAGTTTaGGGAGGCCACGTTTCGGGCCAGCCAGTTGAAATC | + |
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Preference number: 6 (lower is better) Translates to: DVSLLFRKNTPV*GGHVSGQPVEI Trigger: GATTTCAACTGGCTGGCCCGAAACGTGGCCTCCCCAAACTGGAGTATTCTTCCTGAAGAGGAGAGAGACATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 90 bp | TTTCGGGCCAGCCAGTTGAAATCATCAACCTGGTCCCAGTTATTTTaGCTCCTATCTAAACCGGAGTCCTGGAAGTCCTTGTCGATCCCC | + |
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Preference number: 6 (lower is better) Translates to: FRASQLKSSTWSQLF*LLSKPESWKSLSIP Trigger: GGGGATCGACAAGGACTTCCAGGACTCCGGTTTAGATAGGAGCAAAAATAACTGGGACCAGGTTGATGATTTCAACTGGCTGGCCCGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CCA 72 bp | GCCACGTTTCGGGCCAGCCAGTTGAAATCATCAACCTaGTCCCAGTTATTTTTGCTCCTATCTAAACCGGAG | + |
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Preference number: 6 (lower is better) Translates to: ATFRASQLKSST*SQLFLLLSKPE Trigger: CTCCGGTTTAGATAGGAGCAAAAATAACTGGGACCAGGTTGATGATTTCAACTGGCTGGCCCGAAACGTGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 90 bp | GGAAGAATACTCCAGTTTGGGGAGGCCACGTTTCGGGCCAGCCAGTaGAAATCATCAACCTGGTCCCAGTTATTTTTGCTCCTATCTAAA | + |
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Preference number: 6 (lower is better) Translates to: GRILQFGEATFRASQ*KSSTWSQLFLLLSK Trigger: TTTAGATAGGAGCAAAAATAACTGGGACCAGGTTGATGATTTCAACTGGCTGGCCCGAAACGTGGCCTCCCCAAACTGGAGTATTCTTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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| CDS CAA 72 bp | AGCCAGTTGAAATCATCAACCTGGTCCCAGTTATTTTaGCTCCTATCTAAACCGGAGTCCTGGAAGTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: SQLKSSTWSQLF*LLSKPESWKSL Trigger: CAAGGACTTCCAGGACTCCGGTTTAGATAGGAGCAAAAATAACTGGGACCAGGTTGATGATTTCAACTGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040434.9 |
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