RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TBC1D25 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039201

Ensembl transcript IDs: ENSMUST00000039892.9, ENSMUST00000143984.2, ENSMUST00000172020.8, ENSMUST00000239441.2

Found 217 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp CACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGACCCGCGGCCCCACCTTaGACCAGAGCGCAGGCGCAG +
Preference number: 4 (lower is better)
Translates to: HTYSNLGREGLRLQHVWGPAAPP*TRAQAQ
Trigger: CTGCGCCTGCGCTCTGGTGCAAGGTGGGGCCGCGGG...TCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000039892.9
CDS-3UTR CCA 90 bp GCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGCCTGCCCCTCCCACCTaGCTTGGGCTGGAGGTCGCA +
Preference number: 4 (lower is better)
Translates to: ATHTQIWGERASGSNMSGPAPPT*LGLEVA
Trigger: TGCGACCTCCAGCCCAAGCCAGGTGGGAGGGGCAGG...CCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039892.9
CDS-3UTR CCA 90 bp GGCCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTACCGAGGCCGCGGAGGTaGTTGCCATCCCGCCGCTGT +
Preference number: 4 (lower is better)
Translates to: GPHGKEWSTIGVGALEGVPRPRR*LPSRRC
Trigger: ACAGCGGCGGGATGGCAACCACCTCCGCGGCCTCGG...TACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
CDS-3UTR TCA 90 bp GCAGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCAGCATGTGCCTCTaGCGTACTGGCCGTCCCCTG +
Preference number: 4 (lower is better)
Translates to: AVPRLSHTYSNLGREGLRLSMCL*RTGRPL
Trigger: CAGGGGACGGCCAGTACGTCAGAGGCACATGCTGAG...CCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp CCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGGGTGCTGTAGGACCCTaGCCCTCCCACCTGGCTTGG +
Preference number: 4 (lower is better)
Translates to: PHILKSGERGPQAPTCLGGAVGP*PSHLAW
Trigger: CCAAGCCAGGTGGGAGGGGCAGGGTCCTACAGCACC...CCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGG
61% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000039892.9
CDS-3UTR CCA 90 bp GTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCGGGCCGAGAAGAGGTaGAGAGGAGTGGATCTGGGG +
Preference number: 4 (lower is better)
Translates to: VPRLSHTYSNLGREGLRLRAEKR*RGVDLG
Trigger: CCCCAGATCCACTCCTCTCCACCTCTTCTCGGCCCG...GAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GCAGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCCTCGGCCAAACTCCTaGGGTGGGGGAAGGCCCATT +
Preference number: 4 (lower is better)
Translates to: AVPRLSHTYSNLGREGLRPRPNS*GGGRPI
Trigger: AATGGGCCTTCCCCCACCCCAGGAGTTTGGCCGAGG...CCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp ACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGCAGGCCTCGGCCAAACTCCTaGGGTGGGGGAAGGCCCATT +
Preference number: 4 (lower is better)
Translates to: TQIWGERASGSNMSGDGRPRPNS*GGGRPI
Trigger: AATGGGCCTTCCCCCACCCCAGGAGTTTGGCCGAGG...CCTGCCATCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp GCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGCTCAGCATGTGCCTCTaGCGTACTGGCCGTCCCCTG +
Preference number: 4 (lower is better)
Translates to: ATHTQIWGERASGSNMSGLSMCL*RTGRPL
Trigger: CAGGGGACGGCCAGTACGTCAGAGGCACATGCTGAG...CCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp CATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGCGCCATCCTCAGGCCCTaGGTAGTAGGGATGGGCTCG +
Preference number: 4 (lower is better)
Translates to: HTQIWGERASGSNMSGDGAILRP*VVGMGS
Trigger: CGAGCCCATCCCTACTACGCAGGGCCTGAGGATGGC...GCCATCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp CCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGGCCATCCTCAGGCCCTaGGTAGTAGGGATGGGCTCG +
Preference number: 4 (lower is better)
Translates to: PHILKSGERGPQAPTCLGAILRP*VVGMGS
Trigger: CGAGCCCATCCCTACTACGCAGGGCCTGAGGATGGC...CCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTATACCGAGGCCGCGGAGGTaGTTGCCATCCCGCCGCTGT +
Preference number: 4 (lower is better)
Translates to: PSWQRMEYHWGWSVGGSIPRPRR*LPSRRC
Trigger: ACAGCGGCGGGATGGCAACCACCTCCGCGGCCTCGG...TATACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
CDS-3UTR CCA 90 bp GTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCGGTGGGCAAACTTGGTaGCCATGGCACGGCCATCAG +
Preference number: 4 (lower is better)
Translates to: VPRLSHTYSNLGREGLRLGGQTW*PWHGHQ
Trigger: CTGATGGCCGTGCCATGGCCACCAAGTTTGCCCACC...GAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GCAGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCCAGTGTCTGCTACTTaGCTGGGAGGTCCGACGAGC +
Preference number: 4 (lower is better)
Translates to: AVPRLSHTYSNLGREGLRPVSAT*LGGPTS
Trigger: GCTCGTCGGACCTCCCAGCCAAGTAGCAGACACTGG...CCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp AGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCGGGCCGAGAAGAGGTaGAGAGGAGTGGATCTGGGG +
Preference number: 4 (lower is better)
Translates to: SAKAEPHILKSGERGPQARAEKR*RGVDLG
Trigger: CCCCAGATCCACTCCTCTCCACCTCTTCTCGGCCCG...AGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGCGGGCCGAGAAGAGGTaGAGAGGAGTGGATCTGGGG +
Preference number: 4 (lower is better)
Translates to: ATHTQIWGERASGSNMSGRAEKR*RGVDLG
Trigger: CCCCAGATCCACTCCTCTCCACCTCTTCTCGGCCCG...CCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGCCTCGGCCAAACTCCTaGGGTGGGGGAAGGCCCATT +
Preference number: 4 (lower is better)
Translates to: PHILKSGERGPQAPTCLGPRPNS*GGGRPI
Trigger: AATGGGCCTTCCCCCACCCCAGGAGTTTGGCCGAGG...CCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTATATGTCCAGGTCCTGCCTaGCCCGGTCCGTGGCGCCGT +
Preference number: 4 (lower is better)
Translates to: PSWQRMEYHWGWSVGGSICPGPA*PGPWRR
Trigger: ACGGCGCCACGGACCGGGCCAGGCAGGACCTGGACA...TATACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172020.8
CDS-3UTR TCA 90 bp GTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAATGGGCTGTCCTCTaGGGGCCGAATGTCTACACG +
Preference number: 4 (lower is better)
Translates to: VPRLSHTYSNLGREGLRLQWAVL*GPNVYT
Trigger: CGTGTAGACATTCGGCCCTCAGAGGACAGCCCATTG...GAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp GAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGCTCAGCATGTGCCTCTaGCGTACTGGCCGTCCCCTG +
Preference number: 4 (lower is better)
Translates to: EPHILKSGERGPQAPTCLLSMCL*RTGRPL
Trigger: CAGGGGACGGCCAGTACGTCAGAGGCACATGCTGAG...CAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp ACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGCAGGCCAGCCCATTGCGCATaGTGTGGTCACGATGCTCCA +
Preference number: 4 (lower is better)
Translates to: TQIWGERASGSNMSGDGRPAHCA*CGHDAP
Trigger: TGGAGCATCGTGACCACATCATGCGCAATGGGCTGG...CCTGCCATCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp GCAGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCCAGCCCATTGCGCATaGTGTGGTCACGATGCTCCA +
Preference number: 4 (lower is better)
Translates to: AVPRLSHTYSNLGREGLRPAHCA*CGHDAP
Trigger: TGGAGCATCGTGACCACATCATGCGCAATGGGCTGG...CCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp GCAGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCGGATGAGGATGTGCTaGAACACGTCCAGCGAGGTG +
Preference number: 4 (lower is better)
Translates to: AVPRLSHTYSNLGREGLRRMRMC*NTSSEV
Trigger: CACCTCGCTGGACGTGTTGCAGCACATCCTCATCCG...CCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp GGCCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTAGCCATCCTCAGGCCCTaGGTAGTAGGGATGGGCTCG +
Preference number: 4 (lower is better)
Translates to: GPHGKEWSTIGVGALEGVAILRP*VVGMGS
Trigger: CGAGCCCATCCCTACTACGCAGGGCCTGAGGATGGC...TACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAAGCACGGCCATCAGGGTaGAAGTTGGCAGCTAAGCGC +
Preference number: 4 (lower is better)
Translates to: PRLSHTYSNLGREGLRLQARPSG*KLAAKR
Trigger: GCGCTTAGCTGCCAACTTCCACCCTGATGGCCGTGC...TTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGGTGGGCAAACTTGGTaGCCATGGCACGGCCATCAG +
Preference number: 4 (lower is better)
Translates to: ATHTQIWGERASGSNMSGGGQTW*PWHGHQ
Trigger: CTGATGGCCGTGCCATGGCCACCAAGTTTGCCCACC...CCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp AGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAGTGTCTGCTACTTaGCTGGGAGGTCCGACGAGC +
Preference number: 4 (lower is better)
Translates to: SAKAEPHILKSGERGPQAPVSAT*LGGPTS
Trigger: GCTCGTCGGACCTCCCAGCCAAGTAGCAGACACTGG...AGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GCAGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGACTGGCCGTCCCCTGTaGCTACCAAAGCCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: AVPRLSHTYSNLGREGLRTGRPL*LPKPVS
Trigger: AGACACTGGCTTTGGTAGCCACAGGGGACGGCCAGT...CCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCGGGCCGAGAAGAGGTaGAGAGGAGTGGATCTGGGG +
Preference number: 4 (lower is better)
Translates to: AEPHILKSGERGPQAPTCRAEKR*RGVDLG
Trigger: CCCCAGATCCACTCCTCTCCACCTCTTCTCGGCCCG...ACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGCTGGGGGAAGGCCCATTaGAGGTGGAGGTGGTACAGG +
Preference number: 4 (lower is better)
Translates to: HTQIWGERASGSNMSGDGWGKAH*RWRWYR
Trigger: CCTGTACCACCTCCACCTCCAATGGGCCTTCCCCCA...GCCATCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GGCCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTACCTCGGCCAAACTCCTaGGGTGGGGGAAGGCCCATT +
Preference number: 4 (lower is better)
Translates to: GPHGKEWSTIGVGALEGVPRPNS*GGGRPI
Trigger: AATGGGCCTTCCCCCACCCCAGGAGTTTGGCCGAGG...TACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp AGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCAATGGGCTGTCCTCTaGGGGCCGAATGTCTACACG +
Preference number: 4 (lower is better)
Translates to: SAKAEPHILKSGERGPQAQWAVL*GPNVYT
Trigger: CGTGTAGACATTCGGCCCTCAGAGGACAGCCCATTG...AGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp CCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGGGACTGTGCTGCGGATaGATTCCAGGTCCTCAGGGT +
Preference number: 4 (lower is better)
Translates to: PHILKSGERGPQAPTCLGGLCCG*IPGPQG
Trigger: ACCCTGAGGACCTGGAATTCATCCGCAGCACAGTCC...CCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGG
58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp GCAGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGAGCAGAGGAAGAGCATaGATGGGTTCCCTCGGCCAA +
Preference number: 4 (lower is better)
Translates to: AVPRLSHTYSNLGREGLRSRGRA*MGSLGQ
Trigger: TTGGCCGAGGGAACCCATTCATGCTCTTCCTCTGCT...CCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp GCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGCCAGCCCATTGCGCATaGTGTGGTCACGATGCTCCA +
Preference number: 4 (lower is better)
Translates to: ATHTQIWGERASGSNMSGPAHCA*CGHDAP
Trigger: TGGAGCATCGTGACCACATCATGCGCAATGGGCTGG...CCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp CCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGCGGATGAGGATGTGCTaGAACACGTCCAGCGAGGTG +
Preference number: 4 (lower is better)
Translates to: PHILKSGERGPQAPTCLGRMRMC*NTSSEV
Trigger: CACCTCGCTGGACGTGTTGCAGCACATCCTCATCCG...CCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp CATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGCGCTCGGATGAGGATGTaGTGCAACACGTCCAGCGAG +
Preference number: 4 (lower is better)
Translates to: HTQIWGERASGSNMSGDGARMRM*CNTSSE
Trigger: CTCGCTGGACGTGTTGCAGCACATCCTCATCCGAGC...GCCATCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp GCAGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGACCAAAGCCAGTGTCTaGTACTTGGCTGGGAGGTCC +
Preference number: 4 (lower is better)
Translates to: AVPRLSHTYSNLGREGLRTKASV*YLAGRS
Trigger: GGACCTCCCAGCCAAGTAGCAGACACTGGCTTTGGT...CCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp GCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGCTGCCTGTGTGTAAGTaGCTGTCCAGGTCCTGCCTG +
Preference number: 4 (lower is better)
Translates to: ATHTQIWGERASGSNMSGLPVCK*LSRSCL
Trigger: CAGGCAGGACCTGGACAGGCACTTACACACAGGCAG...CCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172020.8
CDS-3UTR CCA 90 bp GTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCTCAGGGTTCACTCGCTaGGCCCACTCACTTTTGAGC +
Preference number: 4 (lower is better)
Translates to: VPRLSHTYSNLGREGLRLSGFTR*AHSLLS
Trigger: GCTCAAAAGTGAGTGGGCCCAGCGAGTGAACCCTGA...GAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGAGCACGGCCATCAGGGTaGAAGTTGGCAGCTAAGCGC +
Preference number: 4 (lower is better)
Translates to: HTYSNLGREGLRLQHVWGARPSG*KLAAKR
Trigger: GCGCTTAGCTGCCAACTTCCACCCTGATGGCCGTGC...TCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTGCACGGCCATCAGGGTaGAAGTTGGCAGCTAAGCGC +
Preference number: 4 (lower is better)
Translates to: AEPHILKSGERGPQAPTCARPSG*KLAAKR
Trigger: GCGCTTAGCTGCCAACTTCCACCCTGATGGCCGTGC...ACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp AGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCAAACTTGGTGGCCATaGCACGGCCATCAGGGTGGA +
Preference number: 4 (lower is better)
Translates to: SAKAEPHILKSGERGPQAQTWWP*HGHQGG
Trigger: TCCACCCTGATGGCCGTGCCATGGCCACCAAGTTTG...AGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACAAACTTGGTGGCCATaGCACGGCCATCAGGGTGGA +
Preference number: 4 (lower is better)
Translates to: PRLSHTYSNLGREGLRLQQTWWP*HGHQGG
Trigger: TCCACCCTGATGGCCGTGCCATGGCCACCAAGTTTG...TTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGCCAAACTTGGTGGCCATaGCACGGCCATCAGGGTGGA +
Preference number: 4 (lower is better)
Translates to: HTQIWGERASGSNMSGDGQTWWP*HGHQGG
Trigger: TCCACCCTGATGGCCGTGCCATGGCCACCAAGTTTG...GCCATCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGAGGTGGGCAAACTTGGTaGCCATGGCACGGCCATCAG +
Preference number: 4 (lower is better)
Translates to: HTYSNLGREGLRLQHVWGGGQTW*PWHGHQ
Trigger: CTGATGGCCGTGCCATGGCCACCAAGTTTGCCCACC...TCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCCAGTGTCTGCTACTTaGCTGGGAGGTCCGACGAGC +
Preference number: 4 (lower is better)
Translates to: AEPHILKSGERGPQAPTCPVSAT*LGGPTS
Trigger: GCTCGTCGGACCTCCCAGCCAAGTAGCAGACACTGG...ACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GGCCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTACCAGTGTCTGCTACTTaGCTGGGAGGTCCGACGAGC +
Preference number: 4 (lower is better)
Translates to: GPHGKEWSTIGVGALEGVPVSAT*LGGPTS
Trigger: GCTCGTCGGACCTCCCAGCCAAGTAGCAGACACTGG...TACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGACTGGCCGTCCCCTGTaGCTACCAAAGCCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: ATHTQIWGERASGSNMSGTGRPL*LPKPVS
Trigger: AGACACTGGCTTTGGTAGCCACAGGGGACGGCCAGT...CCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAAACTGGCCGTCCCCTGTaGCTACCAAAGCCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: PRLSHTYSNLGREGLRLQTGRPL*LPKPVS
Trigger: AGACACTGGCTTTGGTAGCCACAGGGGACGGCCAGT...TTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GCAGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGGGAGAGGAGTGGATCTaGGGAATTCAGCAAGGGCTC +
Preference number: 4 (lower is better)
Translates to: AVPRLSHTYSNLGREGLRGEEWI*GIQQGL
Trigger: GAGCCCTTGCTGAATTCCCCAGATCCACTCCTCTCC...CCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCGGAGAGGAGTGGATCTaGGGAATTCAGCAAGGGCTC +
Preference number: 4 (lower is better)
Translates to: VPRLSHTYSNLGREGLRLGEEWI*GIQQGL
Trigger: GAGCCCTTGCTGAATTCCCCAGATCCACTCCTCTCC...GAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCGCTTCCCAGGGTCTCTaGGAGAACCTACCTCTTGCA +
Preference number: 4 (lower is better)
Translates to: VPRLSHTYSNLGREGLRLASQGL*ENLPLA
Trigger: TGCAAGAGGTAGGTTCTCCCAGAGACCCTGGGAAGC...GAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp ACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGCAGGGCTTCCCAGGGTCTCTaGGAGAACCTACCTCTTGCA +
Preference number: 4 (lower is better)
Translates to: TQIWGERASGSNMSGDGRASQGL*ENLPLA
Trigger: TGCAAGAGGTAGGTTCTCCCAGAGACCCTGGGAAGC...CCTGCCATCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GCAGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGGCTTCCCAGGGTCTCTaGGAGAACCTACCTCTTGCA +
Preference number: 4 (lower is better)
Translates to: AVPRLSHTYSNLGREGLRASQGL*ENLPLA
Trigger: TGCAAGAGGTAGGTTCTCCCAGAGACCCTGGGAAGC...CCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GGCCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTATGGGGGAAGGCCCATTaGAGGTGGAGGTGGTACAGG +
Preference number: 4 (lower is better)
Translates to: GPHGKEWSTIGVGALEGVWGKAH*RWRWYR
Trigger: CCTGTACCACCTCCACCTCCAATGGGCCTTCCCCCA...TACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGGGGAAGGCCCATTaGAGGTGGAGGTGGTACAGG +
Preference number: 4 (lower is better)
Translates to: HTYSNLGREGLRLQHVWGWGKAH*RWRWYR
Trigger: CCTGTACCACCTCCACCTCCAATGGGCCTTCCCCCA...TCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp CATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGCTCCAGCGAGGTGATCTaGGGATCCACCGCAAAAGAG +
Preference number: 4 (lower is better)
Translates to: HTQIWGERASGSNMSGDGSSEVI*GSTAKE
Trigger: CTCTTTTGCGGTGGATCCTCAGATCACCTCGCTGGA...GCCATCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp CCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAATCCAGCGAGGTGATCTaGGGATCCACCGCAAAAGAG +
Preference number: 4 (lower is better)
Translates to: PRLSHTYSNLGREGLRLQSSEVI*GSTAKE
Trigger: CTCTTTTGCGGTGGATCCTCAGATCACCTCGCTGGA...TTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp GTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCAGTCAAAGGCTCGGATaGGGATGTGCTGCAACACGT +
Preference number: 4 (lower is better)
Translates to: VPRLSHTYSNLGREGLRLSQRLG*GCAATR
Trigger: ACGTGTTGCAGCACATCCTCATCCGAGCCTTTGACT...GAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp GAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGCAATGGGCTGTCCTCTaGGGGCCGAATGTCTACACG +
Preference number: 4 (lower is better)
Translates to: EPHILKSGERGPQAPTCLQWAVL*GPNVYT
Trigger: CGTGTAGACATTCGGCCCTCAGAGGACAGCCCATTG...CAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp GTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCAGTGTACGACCCACCTaGGAGAGGATGGACTGTGTA +
Preference number: 4 (lower is better)
Translates to: VPRLSHTYSNLGREGLRLSVRPT*ERMDCV
Trigger: TACACAGTCCATCCTCTCTCAGGTGGGTCGTACACT...GAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp CACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGAGGACTGTGCTGCGGATaGATTCCAGGTCCTCAGGGT +
Preference number: 4 (lower is better)
Translates to: HTYSNLGREGLRLQHVWGGLCCG*IPGPQG
Trigger: ACCCTGAGGACCTGGAATTCATCCGCAGCACAGTCC...TCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp GTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCATCCCCTGGCAGTATaGTACCTGTGGATGGGTAAC +
Preference number: 4 (lower is better)
Translates to: VPRLSHTYSNLGREGLRLHPLAV*YLWMGN
Trigger: GTTACCCATCCACAGGTATCATACTGCCAGGGGATG...GAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp CCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGGACAGCAAGAATTGGTaGGGCCAGGTCACTCATCCC +
Preference number: 4 (lower is better)
Translates to: PHILKSGERGPQAPTCLGDSKNW*GQVTHP
Trigger: GGGATGAGTGACCTGGCCTCACCAATTCTTGCTGTC...CCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp AGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTGACAGCAAGAATTGGTaGGGCCAGGTCACTCATCCC +
Preference number: 4 (lower is better)
Translates to: SAKAEPHILKSGERGPQADSKNW*GQVTHP
Trigger: GGGATGAGTGACCTGGCCTCACCAATTCTTGCTGTC...AGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp GCAGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGGTCTCAATAGCAGCTTaGGGTGGGCAAACTTGGTGG +
Preference number: 4 (lower is better)
Translates to: AVPRLSHTYSNLGREGLRVSIAA*GGQTWW
Trigger: CCACCAAGTTTGCCCACCTCAAGCTGCTATTGAGAC...CCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp ACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGCAGGGTCTCAATAGCAGCTTaGGGTGGGCAAACTTGGTGG +
Preference number: 4 (lower is better)
Translates to: TQIWGERASGSNMSGDGRVSIAA*GGQTWW
Trigger: CCACCAAGTTTGCCCACCTCAAGCTGCTATTGAGAC...CCTGCCATCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp CCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTATACTCAGCATGTGCCTCTaGCGTACTGGCCGTCCCCTG +
Preference number: 4 (lower is better)
Translates to: PSWQRMEYHWGWSVGGSILSMCL*RTGRPL
Trigger: CAGGGGACGGCCAGTACGTCAGAGGCACATGCTGAG...TATACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp CATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGCAGCAGAGGAAGAGCATaGATGGGTTCCCTCGGCCAA +
Preference number: 4 (lower is better)
Translates to: HTQIWGERASGSNMSGDGSRGRA*MGSLGQ
Trigger: TTGGCCGAGGGAACCCATTCATGCTCTTCCTCTGCT...GCCATCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp GCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGAGCAGAGGAAGAGCATaGATGGGTTCCCTCGGCCAA +
Preference number: 4 (lower is better)
Translates to: ATHTQIWGERASGSNMSGSRGRA*MGSLGQ
Trigger: TTGGCCGAGGGAACCCATTCATGCTCTTCCTCTGCT...CCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp GGCCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTACCAGCCCATTGCGCATaGTGTGGTCACGATGCTCCA +
Preference number: 4 (lower is better)
Translates to: GPHGKEWSTIGVGALEGVPAHCA*CGHDAP
Trigger: TGGAGCATCGTGACCACATCATGCGCAATGGGCTGG...TACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp CACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGACGGATGAGGATGTGCTaGAACACGTCCAGCGAGGTG +
Preference number: 4 (lower is better)
Translates to: HTYSNLGREGLRLQHVWGRMRMC*NTSSEV
Trigger: CACCTCGCTGGACGTGTTGCAGCACATCCTCATCCG...TCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp GCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGACCAAAGCCAGTGTCTaGTACTTGGCTGGGAGGTCC +
Preference number: 4 (lower is better)
Translates to: ATHTQIWGERASGSNMSGTKASV*YLAGRS
Trigger: GGACCTCCCAGCCAAGTAGCAGACACTGGCTTTGGT...CCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAATCAGGGTTCACTCGCTaGGCCCACTCACTTTTGAGC +
Preference number: 4 (lower is better)
Translates to: PRLSHTYSNLGREGLRLQSGFTR*AHSLLS
Trigger: GCTCAAAAGTGAGTGGGCCCAGCGAGTGAACCCTGA...TTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp AGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTTCAGGGTTCACTCGCTaGGCCCACTCACTTTTGAGC +
Preference number: 4 (lower is better)
Translates to: SAKAEPHILKSGERGPQASGFTR*AHSLLS
Trigger: GCTCAAAAGTGAGTGGGCCCAGCGAGTGAACCCTGA...AGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGACAAACTTGGTGGCCATaGCACGGCCATCAGGGTGGA +
Preference number: 4 (lower is better)
Translates to: HTYSNLGREGLRLQHVWGQTWWP*HGHQGG
Trigger: TCCACCCTGATGGCCGTGCCATGGCCACCAAGTTTG...TCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTACTGGCCGTCCCCTGTaGCTACCAAAGCCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: AEPHILKSGERGPQAPTCTGRPL*LPKPVS
Trigger: AGACACTGGCTTTGGTAGCCACAGGGGACGGCCAGT...ACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGCTGGGTGGGATAGTTaGACCAGATGGTCCTTCCTG +
Preference number: 4 (lower is better)
Translates to: ATHTQIWGERASGSNMSGAGWDS*TRWSFL
Trigger: CAGGAAGGACCATCTGGTCCAACTATCCCACCCAGC...CCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCGAAGGAGAAGCCTCCTaGGTAGATGGAGGAGATGAC +
Preference number: 4 (lower is better)
Translates to: VPRLSHTYSNLGREGLRLEGEAS*VDGGDD
Trigger: GTCATCTCCTCCATCTACCCAGGAGGCTTCTCCTTC...GAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCATTGGAGGTGGAGGTaGTACAGGCTTCCCAGGGTC +
Preference number: 4 (lower is better)
Translates to: AEPHILKSGERGPQAPTCHWRWR*YRLPRV
Trigger: GACCCTGGGAAGCCTGTACCACCTCCACCTCCAATG...ACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GGCCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTACATTGGAGGTGGAGGTaGTACAGGCTTCCCAGGGTC +
Preference number: 4 (lower is better)
Translates to: GPHGKEWSTIGVGALEGVHWRWR*YRLPRV
Trigger: GACCCTGGGAAGCCTGTACCACCTCCACCTCCAATG...TACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGCATTGGAGGTGGAGGTaGTACAGGCTTCCCAGGGTC +
Preference number: 4 (lower is better)
Translates to: EPHILKSGERGPQAPTCLHWRWR*YRLPRV
Trigger: GACCCTGGGAAGCCTGTACCACCTCCACCTCCAATG...CAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCGAGGAAGAGCATGAATaGGTTCCCTCGGCCAAACTC +
Preference number: 4 (lower is better)
Translates to: VPRLSHTYSNLGREGLRLEEEHE*VPSAKL
Trigger: GAGTTTGGCCGAGGGAACCCATTCATGCTCTTCCTC...GAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp CACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATCCAGCGAGGTGATCTaGGGATCCACCGCAAAAGAG +
Preference number: 4 (lower is better)
Translates to: HTYSNLGREGLRLQHVWGSSEVI*GSTAKE
Trigger: CTCTTTTGCGGTGGATCCTCAGATCACCTCGCTGGA...TCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp CCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGAGTCAAAGGCTCGGATaGGGATGTGCTGCAACACGT +
Preference number: 4 (lower is better)
Translates to: PHILKSGERGPQAPTCLGSQRLG*GCAATR
Trigger: ACGTGTTGCAGCACATCCTCATCCGAGCCTTTGACT...CCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp GCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGCTCGAGCCAGGTAGCTaGTGCCAAAGTTCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: ATHTQIWGERASGSNMSGLEPGS*CQSSSS
Trigger: GGAAGAAGAACTTTGGCATCAGCTACCTGGCTCGAG...CCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp CCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAAAGTGTACGACCCACCTaGGAGAGGATGGACTGTGTA +
Preference number: 4 (lower is better)
Translates to: PRLSHTYSNLGREGLRLQSVRPT*ERMDCV
Trigger: TACACAGTCCATCCTCTCTCAGGTGGGTCGTACACT...TTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp GCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGAGTGTACGACCCACCTaGGAGAGGATGGACTGTGTA +
Preference number: 4 (lower is better)
Translates to: ATHTQIWGERASGSNMSGSVRPT*ERMDCV
Trigger: TACACAGTCCATCCTCTCTCAGGTGGGTCGTACACT...CCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp CCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGCATCCCCTGGCAGTATaGTACCTGTGGATGGGTAAC +
Preference number: 4 (lower is better)
Translates to: PHILKSGERGPQAPTCLGHPLAV*YLWMGN
Trigger: GTTACCCATCCACAGGTATCATACTGCCAGGGGATG...CCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp GCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTGACAGCAAGAATTGGTaGGGCCAGGTCACTCATCCC +
Preference number: 4 (lower is better)
Translates to: AEPHILKSGERGPQAPTCDSKNW*GQVTHP
Trigger: GGGATGAGTGACCTGGCCTCACCAATTCTTGCTGTC...ACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp CCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGGGCCTTCATGGTCCATaGCAGCAAGAATTGGTGAGG +
Preference number: 4 (lower is better)
Translates to: PHILKSGERGPQAPTCLGGLHGP*QQELVR
Trigger: CCTCACCAATTCTTGCTGTCATGGACCATGAAGGCC...CCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGG
56% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp AGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTGGCCTTCATGGTCCATaGCAGCAAGAATTGGTGAGG +
Preference number: 4 (lower is better)
Translates to: SAKAEPHILKSGERGPQAGLHGP*QQELVR
Trigger: CCTCACCAATTCTTGCTGTCATGGACCATGAAGGCC...AGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp AGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTGTCTCAATAGCAGCTTaGGGTGGGCAAACTTGGTGG +
Preference number: 4 (lower is better)
Translates to: SAKAEPHILKSGERGPQAVSIAA*GGQTWW
Trigger: CCACCAAGTTTGCCCACCTCAAGCTGCTATTGAGAC...AGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp GGCCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTAAGCAGAGGAAGAGCATaGATGGGTTCCCTCGGCCAA +
Preference number: 4 (lower is better)
Translates to: GPHGKEWSTIGVGALEGVSRGRA*MGSLGQ
Trigger: TTGGCCGAGGGAACCCATTCATGCTCTTCCTCTGCT...TACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp ACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGCAGGGACCAACTCAGCACCTaGTGGACCTTAGACAGTGTA +
Preference number: 4 (lower is better)
Translates to: TQIWGERASGSNMSGDGRDQLST*WTLDSV
Trigger: TACACTGTCTAAGGTCCAGCAGGTGCTGAGTTGGTC...CCTGCCATCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp GTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCGAGGTCATCGGCACCTaGTTCTTGCAGGTACTGATA +
Preference number: 4 (lower is better)
Translates to: VPRLSHTYSNLGREGLRLEVIGT*FLQVLI
Trigger: TATCAGTACCTGCAAGAAGCAGGTGCCGATGACCTC...GAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp ACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGCAGGGAGGTCATCGGCACCTaGTTCTTGCAGGTACTGATA +
Preference number: 4 (lower is better)
Translates to: TQIWGERASGSNMSGDGREVIGT*FLQVLI
Trigger: TATCAGTACCTGCAAGAAGCAGGTGCCGATGACCTC...CCTGCCATCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp GCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTACCAAAGCCAGTGTCTaGTACTTGGCTGGGAGGTCC +
Preference number: 4 (lower is better)
Translates to: AEPHILKSGERGPQAPTCTKASV*YLAGRS
Trigger: GGACCTCCCAGCCAAGTAGCAGACACTGGCTTTGGT...ACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp ACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGCAGGACTGCAGATAAGGTTTaGAGGCAGTGGCGAAAGCTG +
Preference number: 4 (lower is better)
Translates to: TQIWGERASGSNMSGDGRTADKV*RQWRKL
Trigger: CAGCTTTCGCCACTGCCTCCAAACCTTATCTGCAGT...CCTGCCATCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACTCAGCACCTGCTaGACCTTAGACAGTGTACGA +
Preference number: 4 (lower is better)
Translates to: VPRLSHTYSNLGREGLRLQLSTC*TLDSVR
Trigger: TCGTACACTGTCTAAGGTCCAGCAGGTGCTGAGTTG...GAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATCAGGGTTCACTCGCTaGGCCCACTCACTTTTGAGC +
Preference number: 4 (lower is better)
Translates to: HTYSNLGREGLRLQHVWGSGFTR*AHSLLS
Trigger: GCTCAAAAGTGAGTGGGCCCAGCGAGTGAACCCTGA...TCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp ACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGCAGGAGGTCACTCATCCCCTaGCAGTATGATACCTGTGGA +
Preference number: 4 (lower is better)
Translates to: TQIWGERASGSNMSGDGRRSLIP*QYDTCG
Trigger: TCCACAGGTATCATACTGCCAGGGGATGAGTGACCT...CCTGCCATCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTATAGCACGGCCATCAGGGTaGAAGTTGGCAGCTAAGCGC +
Preference number: 4 (lower is better)
Translates to: PSWQRMEYHWGWSVGGSIARPSG*KLAAKR
Trigger: GCGCTTAGCTGCCAACTTCCACCCTGATGGCCGTGC...TATACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTATAGGTGGGCAAACTTGGTaGCCATGGCACGGCCATCAG +
Preference number: 4 (lower is better)
Translates to: PSWQRMEYHWGWSVGGSIGGQTW*PWHGHQ
Trigger: CTGATGGCCGTGCCATGGCCACCAAGTTTGCCCACC...TATACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGGATAGTTGGACCAGATaGTCCTTCCTGAGGCCCATG +
Preference number: 4 (lower is better)
Translates to: PHILKSGERGPQAPTCLGDSWTR*SFLRPM
Trigger: CATGGGCCTCAGGAAGGACCATCTGGTCCAACTATC...CCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATAGTTGGACCAGATaGTCCTTCCTGAGGCCCATG +
Preference number: 4 (lower is better)
Translates to: ATHTQIWGERASGSNMSGDSWTR*SFLRPM
Trigger: CATGGGCCTCAGGAAGGACCATCTGGTCCAACTATC...CCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGAGCTGGGTGGGATAGTTaGACCAGATGGTCCTTCCTG +
Preference number: 4 (lower is better)
Translates to: HTYSNLGREGLRLQHVWGAGWDS*TRWSFL
Trigger: CAGGAAGGACCATCTGGTCCAACTATCCCACCCAGC...TCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGCTGGGTGGGATAGTTaGACCAGATGGTCCTTCCTG +
Preference number: 4 (lower is better)
Translates to: EPHILKSGERGPQAPTCLAGWDS*TRWSFL
Trigger: CAGGAAGGACCATCTGGTCCAACTATCCCACCCAGC...CAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GGCCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTAGCTGGGTGGGATAGTTaGACCAGATGGTCCTTCCTG +
Preference number: 4 (lower is better)
Translates to: GPHGKEWSTIGVGALEGVAGWDS*TRWSFL
Trigger: CAGGAAGGACCATCTGGTCCAACTATCCCACCCAGC...TACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGAGAGGAGTGGATCTaGGGAATTCAGCAAGGGCTC +
Preference number: 4 (lower is better)
Translates to: EPHILKSGERGPQAPTCLGEEWI*GIQQGL
Trigger: GAGCCCTTGCTGAATTCCCCAGATCCACTCCTCTCC...CAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp AGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTGAGGAAGAGCATGAATaGGTTCCCTCGGCCAAACTC +
Preference number: 4 (lower is better)
Translates to: SAKAEPHILKSGERGPQAEEEHE*VPSAKL
Trigger: GAGTTTGGCCGAGGGAACCCATTCATGCTCTTCCTC...AGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp GAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGCTCGAGCCAGGTAGCTaGTGCCAAAGTTCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: EPHILKSGERGPQAPTCLLEPGS*CQSSSS
Trigger: GGAAGAAGAACTTTGGCATCAGCTACCTGGCTCGAG...CAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp GGCCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTAAGTGTACGACCCACCTaGGAGAGGATGGACTGTGTA +
Preference number: 4 (lower is better)
Translates to: GPHGKEWSTIGVGALEGVSVRPT*ERMDCV
Trigger: TACACAGTCCATCCTCTCTCAGGTGGGTCGTACACT...TACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp CACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGACATCCCCTGGCAGTATaGTACCTGTGGATGGGTAAC +
Preference number: 4 (lower is better)
Translates to: HTYSNLGREGLRLQHVWGHPLAV*YLWMGN
Trigger: GTTACCCATCCACAGGTATCATACTGCCAGGGGATG...TCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp GGCCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTACATCCCCTGGCAGTATaGTACCTGTGGATGGGTAAC +
Preference number: 4 (lower is better)
Translates to: GPHGKEWSTIGVGALEGVHPLAV*YLWMGN
Trigger: GTTACCCATCCACAGGTATCATACTGCCAGGGGATG...TACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp GAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGCCTTCATGGTCCATaGCAGCAAGAATTGGTGAGG +
Preference number: 4 (lower is better)
Translates to: EPHILKSGERGPQAPTCLGLHGP*QQELVR
Trigger: CCTCACCAATTCTTGCTGTCATGGACCATGAAGGCC...CAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp CACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGAGGCCTTCATGGTCCATaGCAGCAAGAATTGGTGAGG +
Preference number: 4 (lower is better)
Translates to: HTYSNLGREGLRLQHVWGGLHGP*QQELVR
Trigger: CCTCACCAATTCTTGCTGTCATGGACCATGAAGGCC...TCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp CCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTATAGCTCGGATGAGGATGTaGTGCAACACGTCCAGCGAG +
Preference number: 4 (lower is better)
Translates to: PSWQRMEYHWGWSVGGSIARMRM*CNTSSE
Trigger: CTCGCTGGACGTGTTGCAGCACATCCTCATCCGAGC...TATACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp GCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGACCAACTCAGCACCTaGTGGACCTTAGACAGTGTA +
Preference number: 4 (lower is better)
Translates to: ATHTQIWGERASGSNMSGDQLST*WTLDSV
Trigger: TACACTGTCTAAGGTCCAGCAGGTGCTGAGTTGGTC...CCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp CCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAAGACCAACTCAGCACCTaGTGGACCTTAGACAGTGTA +
Preference number: 4 (lower is better)
Translates to: PRLSHTYSNLGREGLRLQDQLST*WTLDSV
Trigger: TACACTGTCTAAGGTCCAGCAGGTGCTGAGTTGGTC...TTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp CCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGGAGGTCATCGGCACCTaGTTCTTGCAGGTACTGATA +
Preference number: 4 (lower is better)
Translates to: PHILKSGERGPQAPTCLGEVIGT*FLQVLI
Trigger: TATCAGTACCTGCAAGAAGCAGGTGCCGATGACCTC...CCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp GTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCGGAGAACCTACCTCTTaGATTAAGGGGGATCCTACA +
Preference number: 4 (lower is better)
Translates to: VPRLSHTYSNLGREGLRLGEPTS*IKGDPT
Trigger: TGTAGGATCCCCCTTAATGCAAGAGGTAGGTTCTCC...GAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp GCAGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGGGAGAACCTACCTCTTaGATTAAGGGGGATCCTACA +
Preference number: 4 (lower is better)
Translates to: AVPRLSHTYSNLGREGLRGEPTS*IKGDPT
Trigger: TGTAGGATCCCCCTTAATGCAAGAGGTAGGTTCTCC...CCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGCACTGCAGATAAGGTTTaGAGGCAGTGGCGAAAGCTG +
Preference number: 4 (lower is better)
Translates to: HTQIWGERASGSNMSGDGTADKV*RQWRKL
Trigger: CAGCTTTCGCCACTGCCTCCAAACCTTATCTGCAGT...GCCATCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp AGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCAACTCAGCACCTGCTaGACCTTAGACAGTGTACGA +
Preference number: 4 (lower is better)
Translates to: SAKAEPHILKSGERGPQAQLSTC*TLDSVR
Trigger: TCGTACACTGTCTAAGGTCCAGCAGGTGCTGAGTTG...AGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGCAACTCAGCACCTGCTaGACCTTAGACAGTGTACGA +
Preference number: 4 (lower is better)
Translates to: PHILKSGERGPQAPTCLGQLSTC*TLDSVR
Trigger: TCGTACACTGTCTAAGGTCCAGCAGGTGCTGAGTTG...CCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGAGGTCACTCATCCCCTaGCAGTATGATACCTGTGGA +
Preference number: 4 (lower is better)
Translates to: PHILKSGERGPQAPTCLGRSLIP*QYDTCG
Trigger: TCCACAGGTATCATACTGCCAGGGGATGAGTGACCT...CCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGATAGTTGGACCAGATaGTCCTTCCTGAGGCCCATG +
Preference number: 4 (lower is better)
Translates to: EPHILKSGERGPQAPTCLDSWTR*SFLRPM
Trigger: CATGGGCCTCAGGAAGGACCATCTGGTCCAACTATC...CAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGAGAAGGAGAAGCCTCCTaGGTAGATGGAGGAGATGAC +
Preference number: 4 (lower is better)
Translates to: HTYSNLGREGLRLQHVWGEGEAS*VDGGDD
Trigger: GTCATCTCCTCCATCTACCCAGGAGGCTTCTCCTTC...TCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTGAAGGAGAAGCCTCCTaGGTAGATGGAGGAGATGAC +
Preference number: 4 (lower is better)
Translates to: AEPHILKSGERGPQAPTCEGEAS*VDGGDD
Trigger: GTCATCTCCTCCATCTACCCAGGAGGCTTCTCCTTC...ACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGAAGGAGAAGCCTCCTaGGTAGATGGAGGAGATGAC +
Preference number: 4 (lower is better)
Translates to: EPHILKSGERGPQAPTCLEGEAS*VDGGDD
Trigger: GTCATCTCCTCCATCTACCCAGGAGGCTTCTCCTTC...CAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGAGGAAGAGCATGAATaGGTTCCCTCGGCCAAACTC +
Preference number: 4 (lower is better)
Translates to: EPHILKSGERGPQAPTCLEEEHE*VPSAKL
Trigger: GAGTTTGGCCGAGGGAACCCATTCATGCTCTTCCTC...CAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp GGCCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTAGACCAACTCAGCACCTaGTGGACCTTAGACAGTGTA +
Preference number: 4 (lower is better)
Translates to: GPHGKEWSTIGVGALEGVDQLST*WTLDSV
Trigger: TACACTGTCTAAGGTCCAGCAGGTGCTGAGTTGGTC...TACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp GGCCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTAGAGGTCATCGGCACCTaGTTCTTGCAGGTACTGATA +
Preference number: 4 (lower is better)
Translates to: GPHGKEWSTIGVGALEGVEVIGT*FLQVLI
Trigger: TATCAGTACCTGCAAGAAGCAGGTGCCGATGACCTC...TACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp CCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTATAACCAAAGCCAGTGTCTaGTACTTGGCTGGGAGGTCC +
Preference number: 4 (lower is better)
Translates to: PSWQRMEYHWGWSVGGSITKASV*YLAGRS
Trigger: GGACCTCCCAGCCAAGTAGCAGACACTGGCTTTGGT...TATACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCAACTCAGCACCTGCTaGACCTTAGACAGTGTACGA +
Preference number: 4 (lower is better)
Translates to: AEPHILKSGERGPQAPTCQLSTC*TLDSVR
Trigger: TCGTACACTGTCTAAGGTCCAGCAGGTGCTGAGTTG...ACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTAGGTCACTCATCCCCTaGCAGTATGATACCTGTGGA +
Preference number: 4 (lower is better)
Translates to: AEPHILKSGERGPQAPTCRSLIP*QYDTCG
Trigger: TCCACAGGTATCATACTGCCAGGGGATGAGTGACCT...ACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp ACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGCAGGAAGGCATGGCCTTCATaGTCCATGACAGCAAGAATT +
Preference number: 4 (lower is better)
Translates to: TQIWGERASGSNMSGDGRKAWPS*SMTARI
Trigger: AATTCTTGCTGTCATGGACCATGAAGGCCATGCCTT...CCTGCCATCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR TCA 90 bp CCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTATAGTCTCAATAGCAGCTTaGGGTGGGCAAACTTGGTGG +
Preference number: 4 (lower is better)
Translates to: PSWQRMEYHWGWSVGGSIVSIAA*GGQTWW
Trigger: CCACCAAGTTTGCCCACCTCAAGCTGCTATTGAGAC...TATACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR GCA 90 bp CACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGAGGAGAACCTACCTCTTaGATTAAGGGGGATCCTACA +
Preference number: 4 (lower is better)
Translates to: HTYSNLGREGLRLQHVWGGEPTS*IKGDPT
Trigger: TGTAGGATCCCCCTTAATGCAAGAGGTAGGTTCTCC...TCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAAAAGGCATGGCCTTCATaGTCCATGACAGCAAGAATT +
Preference number: 4 (lower is better)
Translates to: PRLSHTYSNLGREGLRLQKAWPS*SMTARI
Trigger: AATTCTTGCTGTCATGGACCATGAAGGCCATGCCTT...TTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGCAAGCATACAAAGGCATaGCCTTCATGGTCCATGACA +
Preference number: 4 (lower is better)
Translates to: HTQIWGERASGSNMSGDGKHTKA*PSWSMT
Trigger: TGTCATGGACCATGAAGGCCATGCCTTTGTATGCTT...GCCATCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTATAGATAGTTGGACCAGATaGTCCTTCCTGAGGCCCATG +
Preference number: 4 (lower is better)
Translates to: PSWQRMEYHWGWSVGGSIDSWTR*SFLRPM
Trigger: CATGGGCCTCAGGAAGGACCATCTGGTCCAACTATC...TATACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTATAAGGTCACTCATCCCCTaGCAGTATGATACCTGTGGA +
Preference number: 4 (lower is better)
Translates to: PSWQRMEYHWGWSVGGSIRSLIP*QYDTCG
Trigger: TCCACAGGTATCATACTGCCAGGGGATGAGTGACCT...TATACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GGCCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTAAAGGCATGGCCTTCATaGTCCATGACAGCAAGAATT +
Preference number: 4 (lower is better)
Translates to: GPHGKEWSTIGVGALEGVKAWPS*SMTARI
Trigger: AATTCTTGCTGTCATGGACCATGAAGGCCATGCCTT...TACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGAAGCATACAAAGGCATaGCCTTCATGGTCCATGACA +
Preference number: 4 (lower is better)
Translates to: EPHILKSGERGPQAPTCLKHTKA*PSWSMT
Trigger: TGTCATGGACCATGAAGGCCATGCCTTTGTATGCTT...CAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTAAGCATACAAAGGCATaGCCTTCATGGTCCATGACA +
Preference number: 4 (lower is better)
Translates to: AEPHILKSGERGPQAPTCKHTKA*PSWSMT
Trigger: TGTCATGGACCATGAAGGCCATGCCTTTGTATGCTT...ACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGCTAGATGCAGCTAAGTaGACAACAGCATCTTCAAAA +
Preference number: 4 (lower is better)
Translates to: PHILKSGERGPQAPTCLGLDAAK*TTASSK
Trigger: TTTTGAAGATGCTGTTGTCCACTTAGCTGCATCTAG...CCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGCCTAGATGCAGCTAAGTaGACAACAGCATCTTCAAAA +
Preference number: 4 (lower is better)
Translates to: HTQIWGERASGSNMSGDGLDAAK*TTASSK
Trigger: TTTTGAAGATGCTGTTGTCCACTTAGCTGCATCTAG...GCCATCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGCTAGATGCAGCTAAGTaGACAACAGCATCTTCAAAA +
Preference number: 4 (lower is better)
Translates to: ATHTQIWGERASGSNMSGLDAAK*TTASSK
Trigger: TTTTGAAGATGCTGTTGTCCACTTAGCTGCATCTAG...CCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp CCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTATAAAGGCATGGCCTTCATaGTCCATGACAGCAAGAATT +
Preference number: 4 (lower is better)
Translates to: PSWQRMEYHWGWSVGGSIKAWPS*SMTARI
Trigger: AATTCTTGCTGTCATGGACCATGAAGGCCATGCCTT...TATACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CCA 90 bp GAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGCTAGATGCAGCTAAGTaGACAACAGCATCTTCAAAA +
Preference number: 4 (lower is better)
Translates to: EPHILKSGERGPQAPTCLLDAAK*TTASSK
Trigger: TTTTGAAGATGCTGTTGTCCACTTAGCTGCATCTAG...CAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS GCA 90 bp CTCAACCGCCGCGGCCGCCTGGGCACCTCCGACGGGCGGGGGCGCTaGCGAGCACGCCGAGTCCGAGGCCGCGGAGGTGGTTGCCATCCC +
Preference number: 5 (lower is better)
Translates to: LNRRGRLGTSDGRGR*RARRVRGRGGGCHP
Trigger: GGGATGGCAACCACCTCCGCGGCCTCGGACTCGGCGTGCTCGGCAGCGCCCCCGCCCGTCGGAGGTGCCCAGGCGGCCGCGGCGGTTGAG
79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
CDS GCA 90 bp CGGGCGCCCGCGGCCCCACCTTGCACCAGAGCGCAGGCGCAGAGGTaGTGTAGGACCCTGCCCCTCCCACCTGGCTTGGGCTGGAGGTCG +
Preference number: 5 (lower is better)
Translates to: RAPAAPPCTRAQAQR*CRTLPLPPGLGWRS
Trigger: CGACCTCCAGCCCAAGCCAGGTGGGAGGGGCAGGGTCCTACAGCACCTCTGCGCCTGCGCTCTGGTGCAAGGTGGGGCCGCGGGCGCCCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039892.9
CDS CCA 90 bp CGGGCGGGGGCGCTGCCGAGCACGCCGAGTCCGAGGCCGCGGAGGTaGTTGCCATCCCGCCGCTGTCGTCTCTGTCCAGGTGATAACCGA +
Preference number: 5 (lower is better)
Translates to: RAGALPSTPSPRPRR*LPSRRCRLCPGDNR
Trigger: TCGGTTATCACCTGGACAGAGACGACAGCGGCGGGATGGCAACCACCTCCGCGGCCTCGGACTCGGCGTGCTCGGCAGCGCCCCCGCCCG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039892.9
CDS GCA 90 bp TACCCTAACGTACACCCAACAGTGCGGGCGCCCGCGGCCCCACCTTaGACCAGAGCGCAGGCGCAGAGGTGCTGTAGGACCCTGCCCCTC +
Preference number: 5 (lower is better)
Translates to: YPNVHPTVRAPAAPP*TRAQAQRCCRTLPL
Trigger: GAGGGGCAGGGTCCTACAGCACCTCTGCGCCTGCGCTCTGGTGCAAGGTGGGGCCGCGGGCGCCCGCACTGTTGGGTGTACGTTAGGGTA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039892.9
CDS GCA 90 bp CGGGGGCGCTGCCGAGCACGCCGAGTCCGAGGCCGCGGAGGTGGTTaGCATCCCGCCGCTGTCGTCTCTGTCCAGGTGATAACCGATAGT +
Preference number: 5 (lower is better)
Translates to: RGRCRARRVRGRGGG*HPAAVVSVQVITDS
Trigger: ACTATCGGTTATCACCTGGACAGAGACGACAGCGGCGGGATGGCAACCACCTCCGCGGCCTCGGACTCGGCGTGCTCGGCAGCGCCCCCG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039892.9
CDS-3UTR CAA 90 bp CCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAAGCCCGCGGCCCCACCTaGCACCAGAGCGCAGGCGCA +
Preference number: 5 (lower is better)
Translates to: PRLSHTYSNLGREGLRLQARGPT*HQSAGA
Trigger: TGCGCCTGCGCTCTGGTGCAAGGTGGGGCCGCGGGC...TTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039892.9
CDS-3UTR CAA 90 bp GCAGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGAGGCCGCGGAGGTGGTaGCCATCCCGCCGCTGTCGT +
Preference number: 5 (lower is better)
Translates to: AVPRLSHTYSNLGREGLRRPRRW*PSRRCR
Trigger: ACGACAGCGGCGGGATGGCAACCACCTCCGCGGCCT...CCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
CDS-3UTR CAA 90 bp GAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGAGGCCGCGGAGGTGGTaGCCATCCCGCCGCTGTCGT +
Preference number: 5 (lower is better)
Translates to: EPHILKSGERGPQAPTCLRPRRW*PSRRCR
Trigger: ACGACAGCGGCGGGATGGCAACCACCTCCGCGGCCT...CAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
CDS GCA 90 bp CCTCTGACGTACTGGCCGTCCCCTGTGGCTACCAAAGCCAGTGTCTaGTACTTGGCTGGGAGGTCCGACGAGCTCCACTTCGTGTTCAGG +
Preference number: 5 (lower is better)
Translates to: PLTYWPSPVATKASV*YLAGRSDELHFVFR
Trigger: CCTGAACACGAAGTGGAGCTCGTCGGACCTCCCAGCCAAGTAGCAGACACTGGCTTTGGTAGCCACAGGGGACGGCCAGTACGTCAGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CAA 90 bp GTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCGTGCGGAGCACATCCTaGAGGACTGTGCTGCGGATG +
Preference number: 5 (lower is better)
Translates to: VPRLSHTYSNLGREGLRLVRSTS*RTVLRM
Trigger: CATCCGCAGCACAGTCCTCAAGGATGTGCTCCGCAC...GAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CAA 90 bp GCAGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGGTGCGGAGCACATCCTaGAGGACTGTGCTGCGGATG +
Preference number: 5 (lower is better)
Translates to: AVPRLSHTYSNLGREGLRVRSTS*RTVLRM
Trigger: CATCCGCAGCACAGTCCTCAAGGATGTGCTCCGCAC...CCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CAA 90 bp ACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGCAGGGTGCGGAGCACATCCTaGAGGACTGTGCTGCGGATG +
Preference number: 5 (lower is better)
Translates to: TQIWGERASGSNMSGDGRVRSTS*RTVLRM
Trigger: CATCCGCAGCACAGTCCTCAAGGATGTGCTCCGCAC...CCTGCCATCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CAA 90 bp ACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGCAGGTGGGCCCACTCACTTTaGAGCTGCTCGTACTCTCGG +
Preference number: 5 (lower is better)
Translates to: TQIWGERASGSNMSGDGRWAHSL*SCSYSR
Trigger: CCGAGAGTACGAGCAGCTCAAAAGTGAGTGGGCCCA...CCTGCCATCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CAA 90 bp GCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGTTGAGGTGGGCAAACTaGGTGGCCATGGCACGGCCA +
Preference number: 5 (lower is better)
Translates to: ATHTQIWGERASGSNMSGLRWAN*VAMARP
Trigger: TGGCCGTGCCATGGCCACCAAGTTTGCCCACCTCAA...CCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CAA 90 bp AGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTTTGAGGTGGGCAAACTaGGTGGCCATGGCACGGCCA +
Preference number: 5 (lower is better)
Translates to: SAKAEPHILKSGERGPQALRWAN*VAMARP
Trigger: TGGCCGTGCCATGGCCACCAAGTTTGCCCACCTCAA...AGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CAA 90 bp CACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGAGTGCGGAGCACATCCTaGAGGACTGTGCTGCGGATG +
Preference number: 5 (lower is better)
Translates to: HTYSNLGREGLRLQHVWGVRSTS*RTVLRM
Trigger: CATCCGCAGCACAGTCCTCAAGGATGTGCTCCGCAC...TCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CAA 90 bp GTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCCATCAGGGTGGAAGTaGGCAGCTAAGCGCTTCATG +
Preference number: 5 (lower is better)
Translates to: VPRLSHTYSNLGREGLRLPSGWK*AAKRFM
Trigger: CATGAAGCGCTTAGCTGCCAACTTCCACCCTGATGG...GAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CAA 90 bp CACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATTGAGGTGGGCAAACTaGGTGGCCATGGCACGGCCA +
Preference number: 5 (lower is better)
Translates to: HTYSNLGREGLRLQHVWGLRWAN*VAMARP
Trigger: TGGCCGTGCCATGGCCACCAAGTTTGCCCACCTCAA...TCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS TCA 90 bp AAGGCTCGGATGAGGATGTGCTGCAACACGTCCAGCGAGGTGATCTaGGGATCCACCGCAAAAGAGCGGAACTCAGGGGACAAGAAGCTC +
Preference number: 5 (lower is better)
Translates to: KARMRMCCNTSSEVI*GSTAKERNSGDKKL
Trigger: GAGCTTCTTGTCCCCTGAGTTCCGCTCTTTTGCGGTGGATCCTCAGATCACCTCGCTGGACGTGTTGCAGCACATCCTCATCCGAGCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS CCA 90 bp AGGACTGTGCTGCGGATGAATTCCAGGTCCTCAGGGTTCACTCGCTaGGCCCACTCACTTTTGAGCTGCTCGTACTCTCGGCTCTTACGT +
Preference number: 5 (lower is better)
Translates to: RTVLRMNSRSSGFTR*AHSLLSCSYSRLLR
Trigger: ACGTAAGAGCCGAGAGTACGAGCAGCTCAAAAGTGAGTGGGCCCAGCGAGTGAACCCTGAGGACCTGGAATTCATCCGCAGCACAGTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CAA 90 bp CACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGGCCCACTCACTTTaGAGCTGCTCGTACTCTCGG +
Preference number: 5 (lower is better)
Translates to: HTYSNLGREGLRLQHVWGWAHSL*SCSYSR
Trigger: CCGAGAGTACGAGCAGCTCAAAAGTGAGTGGGCCCA...TCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CAA 90 bp GCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGCCATCAGGGTGGAAGTaGGCAGCTAAGCGCTTCATG +
Preference number: 5 (lower is better)
Translates to: ATHTQIWGERASGSNMSGPSGWK*AAKRFM
Trigger: CATGAAGCGCTTAGCTGCCAACTTCCACCCTGATGG...CCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CAA 90 bp CCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGCCATCAGGGTGGAAGTaGGCAGCTAAGCGCTTCATG +
Preference number: 5 (lower is better)
Translates to: PHILKSGERGPQAPTCLGPSGWK*AAKRFM
Trigger: CATGAAGCGCTTAGCTGCCAACTTCCACCCTGATGG...CCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS TCA 90 bp GCAGGTACTGATAGAAGTCTGGGTCAGCATGTCTCAATAGCAGCTTaGGGTGGGCAAACTTGGTGGCCATGGCACGGCCATCAGGGTGGA +
Preference number: 5 (lower is better)
Translates to: AGTDRSLGQHVSIAA*GGQTWWPWHGHQGG
Trigger: TCCACCCTGATGGCCGTGCCATGGCCACCAAGTTTGCCCACCTCAAGCTGCTATTGAGACATGCTGACCCAGACTTCTATCAGTACCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS GCA 90 bp GGAGGTGGTACAGGCTTCCCAGGGTCTCTGGGAGAACCTACCTCTTaGATTAAGGGGGATCCTACAGCTATGTCACCAGAAGGAGAAGCC +
Preference number: 5 (lower is better)
Translates to: GGGTGFPGSLGEPTS*IKGDPTAMSPEGEA
Trigger: GGCTTCTCCTTCTGGTGACATAGCTGTAGGATCCCCCTTAATGCAAGAGGTAGGTTCTCCCAGAGACCCTGGGAAGCCTGTACCACCTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS CCA 90 bp AGCTTGAGGTGGGCAAACTTGGTGGCCATGGCACGGCCATCAGGGTaGAAGTTGGCAGCTAAGCGCTTCATGATGCCACAGAAGCATACA +
Preference number: 5 (lower is better)
Translates to: SLRWANLVAMARPSG*KLAAKRFMMPQKHT
Trigger: TGTATGCTTCTGTGGCATCATGAAGCGCTTAGCTGCCAACTTCCACCCTGATGGCCGTGCCATGGCCACCAAGTTTGCCCACCTCAAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS CCA 90 bp GAAGGCCCATTGGAGGTGGAGGTGGTACAGGCTTCCCAGGGTCTCTaGGAGAACCTACCTCTTGCATTAAGGGGGATCCTACAGCTATGT +
Preference number: 5 (lower is better)
Translates to: EGPLEVEVVQASQGL*ENLPLALRGILQLC
Trigger: ACATAGCTGTAGGATCCCCCTTAATGCAAGAGGTAGGTTCTCCCAGAGACCCTGGGAAGCCTGTACCACCTCCACCTCCAATGGGCCTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CAA 90 bp CACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGACCATCAGGGTGGAAGTaGGCAGCTAAGCGCTTCATG +
Preference number: 5 (lower is better)
Translates to: HTYSNLGREGLRLQHVWGPSGWK*AAKRFM
Trigger: CATGAAGCGCTTAGCTGCCAACTTCCACCCTGATGG...TCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CAA 90 bp CCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTATATTGAGGTGGGCAAACTaGGTGGCCATGGCACGGCCA +
Preference number: 5 (lower is better)
Translates to: PSWQRMEYHWGWSVGGSILRWAN*VAMARP
Trigger: TGGCCGTGCCATGGCCACCAAGTTTGCCCACCTCAA...TATACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CAA 90 bp AGTGCCAAGGCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCGTGGCGCCGTTGTTTaGGCAGTTTACTTCCGGATT +
Preference number: 5 (lower is better)
Translates to: SAKAEPHILKSGERGPQARGAVV*AVYFRI
Trigger: AATCCGGAAGTAAACTGCCAAAACAACGGCGCCACG...AGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGCCTTGGCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172020.8
CDS-3UTR CAA 90 bp CCCTCATGGCAAAGAATGGAGTACCATTGGGGTTGGAGCGTTGGAGGGAGTATATGGGCCCACTCACTTTaGAGCTGCTCGTACTCTCGG +
Preference number: 5 (lower is better)
Translates to: PSWQRMEYHWGWSVGGSIWAHSL*SCSYSR
Trigger: CCGAGAGTACGAGCAGCTCAAAAGTGAGTGGGCCCA...TATACTCCCTCCAACGCTCCAACCCCAATGGTACTCCATTCTTTGCCATGAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS GCA 90 bp CTCCAGCAGCAGCCAGCGGTAACAGAAAAAGAGGTCATCGGCACCTaGTTCTTGCAGGTACTGATAGAAGTCTGGGTCAGCATGTCTCAA +
Preference number: 5 (lower is better)
Translates to: LQQQPAVTEKEVIGT*FLQVLIEVWVSMSQ
Trigger: TTGAGACATGCTGACCCAGACTTCTATCAGTACCTGCAAGAAGCAGGTGCCGATGACCTCTTTTTCTGTTACCGCTGGCTGCTGCTGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS CCA 90 bp AAGCGCTTCATGATGCCACAGAAGCATACAAAGGCATGGCCTTCATaGTCCATGACAGCAAGAATTGGTGAGGCCAGGTCACTCATCCCC +
Preference number: 5 (lower is better)
Translates to: KRFMMPQKHTKAWPS*SMTARIGEARSLIP
Trigger: GGGGATGAGTGACCTGGCCTCACCAATTCTTGCTGTCATGGACCATGAAGGCCATGCCTTTGTATGCTTCTGTGGCATCATGAAGCGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CAA 90 bp CATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTCTGGGGATGGCGATCCAATGACATCTTaGGGGCTAATTATGTCCCAG +
Preference number: 5 (lower is better)
Translates to: HTQIWGERASGSNMSGDGDPMTS*GLIMSQ
Trigger: CTGGGACATAATTAGCCCCAAAGATGTCATTGGATC...GCCATCCCCAGACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS CCA 90 bp TTGGCAGCTAAGCGCTTCATGATGCCACAGAAGCATACAAAGGCATaGCCTTCATGGTCCATGACAGCAAGAATTGGTGAGGCCAGGTCA +
Preference number: 5 (lower is better)
Translates to: LAAKRFMMPQKHTKA*PSWSMTARIGEARS
Trigger: TGACCTGGCCTCACCAATTCTTGCTGTCATGGACCATGAAGGCCATGCCTTTGTATGCTTCTGTGGCATCATGAAGCGCTTAGCTGCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS-3UTR CAA 90 bp GCTGAGCCACACATACTCAAATCTGGGGAGAGAGGGCCTCAGGCTCCAACATGTGATCCAATGACATCTTaGGGGCTAATTATGTCCCAG +
Preference number: 5 (lower is better)
Translates to: AEPHILKSGERGPQAPTCDPMTS*GLIMSQ
Trigger: CTGGGACATAATTAGCCCCAAAGATGTCATTGGATC...ACATGTTGGAGCCTGAGGCCCTCTCTCCCCAGATTTGAGTATGTGTGGCTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS GCA 72 bp GCGGCCCCACCTTGCACCAGAGCGCAGGCGCAGAGGTaGTGTAGGACCCTGCCCCTCCCACCTGGCTTGGGC +
Preference number: 6 (lower is better)
Translates to: AAPPCTRAQAQR*CRTLPLPPGLG
Trigger: GCCCAAGCCAGGTGGGAGGGGCAGGGTCCTACAGCACCTCTGCGCCTGCGCTCTGGTGCAAGGTGGGGCCGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039892.9
CDS CCA 72 bp GCGCTGCCGAGCACGCCGAGTCCGAGGCCGCGGAGGTaGTTGCCATCCCGCCGCTGTCGTCTCTGTCCAGGT +
Preference number: 6 (lower is better)
Translates to: ALPSTPSPRPRR*LPSRRCRLCPG
Trigger: ACCTGGACAGAGACGACAGCGGCGGGATGGCAACCACCTCCGCGGCCTCGGACTCGGCGTGCTCGGCAGCGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039892.9
CDS GCA 72 bp GTACACCCAACAGTGCGGGCGCCCGCGGCCCCACCTTaGACCAGAGCGCAGGCGCAGAGGTGCTGTAGGACC +
Preference number: 6 (lower is better)
Translates to: VHPTVRAPAAPP*TRAQAQRCCRT
Trigger: GGTCCTACAGCACCTCTGCGCCTGCGCTCTGGTGCAAGGTGGGGCCGCGGGCGCCCGCACTGTTGGGTGTAC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039892.9
CDS CAA 72 bp CTGCCGAGCACGCCGAGTCCGAGGCCGCGGAGGTGGTaGCCATCCCGCCGCTGTCGTCTCTGTCCAGGTGAT +
Preference number: 6 (lower is better)
Translates to: LPSTPSPRPRRW*PSRRCRLCPGD
Trigger: ATCACCTGGACAGAGACGACAGCGGCGGGATGGCAACCACCTCCGCGGCCTCGGACTCGGCGTGCTCGGCAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039892.9
CDS GCA 72 bp TGCCGAGCACGCCGAGTCCGAGGCCGCGGAGGTGGTTaGCATCCCGCCGCTGTCGTCTCTGTCCAGGTGATA +
Preference number: 6 (lower is better)
Translates to: CRARRVRGRGGG*HPAAVVSVQVI
Trigger: TATCACCTGGACAGAGACGACAGCGGCGGGATGGCAACCACCTCCGCGGCCTCGGACTCGGCGTGCTCGGCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039892.9
CDS GCA 72 bp TACTGGCCGTCCCCTGTGGCTACCAAAGCCAGTGTCTaGTACTTGGCTGGGAGGTCCGACGAGCTCCACTTC +
Preference number: 6 (lower is better)
Translates to: YWPSPVATKASV*YLAGRSDELHF
Trigger: GAAGTGGAGCTCGTCGGACCTCCCAGCCAAGTAGCAGACACTGGCTTTGGTAGCCACAGGGGACGGCCAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS CCA 72 bp CCCTGTGGCTACCAAAGCCAGTGTCTGCTACTTGGCTaGGAGGTCCGACGAGCTCCACTTCGTGTTCAGGAG +
Preference number: 6 (lower is better)
Translates to: PCGYQSQCLLLG*EVRRAPLRVQE
Trigger: CTCCTGAACACGAAGTGGAGCTCGTCGGACCTCCCAGCCAAGTAGCAGACACTGGCTTTGGTAGCCACAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS CCA 72 bp TACTGCCTGTGTGTAAGTGCCTGTCCAGGTCCTGCCTaGCCCGGTCCGTGGCGCCGTTGTTTTGGCAGTTTA +
Preference number: 6 (lower is better)
Translates to: YCLCVSACPGPA*PGPWRRCFGSL
Trigger: TAAACTGCCAAAACAACGGCGCCACGGACCGGGCCAGGCAGGACCTGGACAGGCACTTACACACAGGCAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172020.8
CDS CCA 72 bp CTGCGGATGAATTCCAGGTCCTCAGGGTTCACTCGCTaGGCCCACTCACTTTTGAGCTGCTCGTACTCTCGG +
Preference number: 6 (lower is better)
Translates to: LRMNSRSSGFTR*AHSLLSCSYSR
Trigger: CCGAGAGTACGAGCAGCTCAAAAGTGAGTGGGCCCAGCGAGTGAACCCTGAGGACCTGGAATTCATCCGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS CCA 72 bp TGGGCAAACTTGGTGGCCATGGCACGGCCATCAGGGTaGAAGTTGGCAGCTAAGCGCTTCATGATGCCACAG +
Preference number: 6 (lower is better)
Translates to: WANLVAMARPSG*KLAAKRFMMPQ
Trigger: CTGTGGCATCATGAAGCGCTTAGCTGCCAACTTCCACCCTGATGGCCGTGCCATGGCCACCAAGTTTGCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS TCA 72 bp ATGAGGATGTGCTGCAACACGTCCAGCGAGGTGATCTaGGGATCCACCGCAAAAGAGCGGAACTCAGGGGAC +
Preference number: 6 (lower is better)
Translates to: MRMCCNTSSEVI*GSTAKERNSGD
Trigger: GTCCCCTGAGTTCCGCTCTTTTGCGGTGGATCCTCAGATCACCTCGCTGGACGTGTTGCAGCACATCCTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039892.9
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS CCA 72 bp AAGTCTGGGTCAGCATGTCTCAATAGCAGCTTGAGGTaGGCAAACTTGGTGGCCATGGCACGGCCATCAGGG +
Preference number: 6 (lower is better)
Translates to: KSGSACLNSSLR*ANLVAMARPSG
Trigger: CCCTGATGGCCGTGCCATGGCCACCAAGTTTGCCCACCTCAAGCTGCTATTGAGACATGCTGACCCAGACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS CAA 90 bp AGGTGGGCAAACTTGGTGGCCATGGCACGGCCATCAGGGTGGAAGTaGGCAGCTAAGCGCTTCATGATGCCACAGAAGCATACAAAGGCA +
Preference number: 6 (lower is better)
Translates to: RWANLVAMARPSGWK*AAKRFMMPQKHTKA
Trigger: TGCCTTTGTATGCTTCTGTGGCATCATGAAGCGCTTAGCTGCCAACTTCCACCCTGATGGCCGTGCCATGGCCACCAAGTTTGCCCACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS CAA 90 bp AAGTCTGGGTCAGCATGTCTCAATAGCAGCTTGAGGTGGGCAAACTaGGTGGCCATGGCACGGCCATCAGGGTGGAAGTTGGCAGCTAAG +
Preference number: 6 (lower is better)
Translates to: KSGSACLNSSLRWAN*VAMARPSGWKLAAK
Trigger: CTTAGCTGCCAACTTCCACCCTGATGGCCGTGCCATGGCCACCAAGTTTGCCCACCTCAAGCTGCTATTGAGACATGCTGACCCAGACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS TCA 72 bp GGTCCTCAGGGTTCACTCGCTGGGCCCACTCACTTTTaGGCTGCTCGTACTCTCGGCTCTTACGTTTCATGT +
Preference number: 6 (lower is better)
Translates to: GPQGSLAGPTHF*AARTLGSYVSC
Trigger: ACATGAAACGTAAGAGCCGAGAGTACGAGCAGCTCAAAAGTGAGTGGGCCCAGCGAGTGAACCCTGAGGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS CCA 72 bp TTGGAGGTGGAGGTGGTACAGGCTTCCCAGGGTCTCTaGGAGAACCTACCTCTTGCATTAAGGGGGATCCTA +
Preference number: 6 (lower is better)
Translates to: LEVEVVQASQGL*ENLPLALRGIL
Trigger: TAGGATCCCCCTTAATGCAAGAGGTAGGTTCTCCCAGAGACCCTGGGAAGCCTGTACCACCTCCACCTCCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS CAA 72 bp AGGTCCTCAGGGTTCACTCGCTGGGCCCACTCACTTTaGAGCTGCTCGTACTCTCGGCTCTTACGTTTCATG +
Preference number: 6 (lower is better)
Translates to: RSSGFTRWAHSL*SCSYSRLLRFM
Trigger: CATGAAACGTAAGAGCCGAGAGTACGAGCAGCTCAAAAGTGAGTGGGCCCAGCGAGTGAACCCTGAGGACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS CAA 72 bp AACTTGGTGGCCATGGCACGGCCATCAGGGTGGAAGTaGGCAGCTAAGCGCTTCATGATGCCACAGAAGCAT +
Preference number: 6 (lower is better)
Translates to: NLVAMARPSGWK*AAKRFMMPQKH
Trigger: ATGCTTCTGTGGCATCATGAAGCGCTTAGCTGCCAACTTCCACCCTGATGGCCGTGCCATGGCCACCAAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS CAA 72 bp TCAGCATGTCTCAATAGCAGCTTGAGGTGGGCAAACTaGGTGGCCATGGCACGGCCATCAGGGTGGAAGTTG +
Preference number: 6 (lower is better)
Translates to: SACLNSSLRWAN*VAMARPSGWKL
Trigger: CAACTTCCACCCTGATGGCCGTGCCATGGCCACCAAGTTTGCCCACCTCAAGCTGCTATTGAGACATGCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS TCA 72 bp GGCCATCAGGGTGGAAGTTGGCAGCTAAGCGCTTCATaGTGCCACAGAAGCATACAAAGGCATGGCCTTCAT +
Preference number: 6 (lower is better)
Translates to: GHQGGSWQLSAS*CHRSIQRHGLH
Trigger: ATGAAGGCCATGCCTTTGTATGCTTCTGTGGCATCATGAAGCGCTTAGCTGCCAACTTCCACCCTGATGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS GCA 72 bp CAGCCAGCGGTAACAGAAAAAGAGGTCATCGGCACCTaGTTCTTGCAGGTACTGATAGAAGTCTGGGTCAGC +
Preference number: 6 (lower is better)
Translates to: QPAVTEKEVIGT*FLQVLIEVWVS
Trigger: GCTGACCCAGACTTCTATCAGTACCTGCAAGAAGCAGGTGCCGATGACCTCTTTTTCTGTTACCGCTGGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS GCA 72 bp ACAGGCTTCCCAGGGTCTCTGGGAGAACCTACCTCTTaGATTAAGGGGGATCCTACAGCTATGTCACCAGAA +
Preference number: 6 (lower is better)
Translates to: TGFPGSLGEPTS*IKGDPTAMSPE
Trigger: TTCTGGTGACATAGCTGTAGGATCCCCCTTAATGCAAGAGGTAGGTTCTCCCAGAGACCCTGGGAAGCCTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS CCA 72 bp CATGTAGTCCATCCGCTCACGGCCAGTCAGCCCATCTaGGTACACATTAAGGAGGTACCGCCATACTACTTT +
Preference number: 6 (lower is better)
Translates to: HVVHPLTASQPI*VHIKEVPPYYF
Trigger: AAAGTAGTATGGCGGTACCTCCTTAATGTGTACCCAGATGGGCTGACTGGCCGTGAGCGGATGGACTACATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS TCA 72 bp CACATTAAGGAGGTACCGCCATACTACTTTTCGAAGTaGAGGCTCCACACCGCCGTGGTAGATCCTCAAACG +
Preference number: 6 (lower is better)
Translates to: HIKEVPPYYFSK*RLHTAVVDPQT
Trigger: CGTTTGAGGATCTACCACGGCGGTGTGGAGCCTTCACTTCGAAAAGTAGTATGGCGGTACCTCCTTAATGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS TCA 72 bp CACAGAAGCATACAAAGGCATGGCCTTCATGGTCCATaGCAGCAAGAATTGGTGAGGCCAGGTCACTCATCC +
Preference number: 6 (lower is better)
Translates to: HRSIQRHGLHGP*QQELVRPGHSS
Trigger: GGATGAGTGACCTGGCCTCACCAATTCTTGCTGTCATGGACCATGAAGGCCATGCCTTTGTATGCTTCTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS CCA 72 bp ATGATGCCACAGAAGCATACAAAGGCATGGCCTTCATaGTCCATGACAGCAAGAATTGGTGAGGCCAGGTCA +
Preference number: 6 (lower is better)
Translates to: MMPQKHTKAWPS*SMTARIGEARS
Trigger: TGACCTGGCCTCACCAATTCTTGCTGTCATGGACCATGAAGGCCATGCCTTTGTATGCTTCTGTGGCATCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS CAA 72 bp GCGGTAACAGAAAAAGAGGTCATCGGCACCTGCTTCTaGCAGGTACTGATAGAAGTCTGGGTCAGCATGTCT +
Preference number: 6 (lower is better)
Translates to: AVTEKEVIGTCF*QVLIEVWVSMS
Trigger: AGACATGCTGACCCAGACTTCTATCAGTACCTGCAAGAAGCAGGTGCCGATGACCTCTTTTTCTGTTACCGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2
CDS CCA 72 bp AAGCGCTTCATGATGCCACAGAAGCATACAAAGGCATaGCCTTCATGGTCCATGACAGCAAGAATTGGTGAG +
Preference number: 6 (lower is better)
Translates to: KRFMMPQKHTKA*PSWSMTARIGE
Trigger: CTCACCAATTCTTGCTGTCATGGACCATGAAGGCCATGCCTTTGTATGCTTCTGTGGCATCATGAAGCGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000039892.9
ENSMUST00000143984.2
ENSMUST00000172020.8
ENSMUST00000239441.2