Pregenerated sensors for TBC1D21 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036244Ensembl transcript IDs: ENSMUST00000040217.6, ENSMUST00000213847.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | AGTGTCAGTGTCCTTAGAGAAGGAACTCCTTTAATGGCTGAGGGACCTCCTTTTTCAAGGTCGATAAGGTaGTTGCAGGCCATGAGAATG | + |
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Preference number: 3 (lower is better) Translates to: SVSVLREGTPLMAEGPPFSRSIR*LQAMRM Trigger: CATTCTCATGGCCTGCAACAACCTTATCGACCTTGA...AAAAGGAGGTCCCTCAGCCATTAAAGGAGTTCCTTCTCTAAGGACACTGACACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR CCA 90 bp | GATCAGCTCATCCGCATCAAGGTCGATAAGGTTGTTGCAGGCCATGAGAATGGCCGTCAGCAGGACCTGTaGGCAGCCAGCAGGCTTCAA | + |
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Preference number: 4 (lower is better) Translates to: DQLIRIKVDKVVAGHENGRQQDL*AASRLQ Trigger: TTGAAGCCTGCTGGCTGCCCACAGGTCCTGCTGACG...GCCATTCTCATGGCCTGCAACAACCTTATCGACCTTGATGCGGATGAGCTGATC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR TCA 90 bp | GGGCAGGTGTCCATTGTGAGTGTCAGTGTCCTTAGAGAAGGAACTCCTTTAATGGGACTGCACAGCCCCTaGGCCCTTCCCTTTGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: GQVSIVSVSVLREGTPLMGLHSP*ALPFEV Trigger: CACCTCAAAGGGAAGGGCTCAGGGGCTGTGCAGTCC...CATTAAAGGAGTTCCTTCTCTAAGGACACTGACACTCACAATGGACACCTGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR TCA 90 bp | GAGATCAGCTCATCCGCATCAAGGTCGATAAGGTTGTTGCAGGCCATGAGAATGGAGCCGCTCATCCCGTaGACTCTGCCACGAGTAGTA | + |
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Preference number: 4 (lower is better) Translates to: EISSSASRSIRLLQAMRMEPLIP*TLPRVV Trigger: TACTACTCGTGGCAGAGTTCACGGGATGAGCGGCTC...CATTCTCATGGCCTGCAACAACCTTATCGACCTTGATGCGGATGAGCTGATCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR GCA 90 bp | AGCAGAGATCAGCTCATCCGCATCAAGGTCGATAAGGTTGTTGCAGGCCATGAGGCACCATCTGTAGCATaGTGTAGGCCACCAGCACCT | + |
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Preference number: 4 (lower is better) Translates to: SRDQLIRIKVDKVVAGHEAPSVA*CRPPAP Trigger: AGGTGCTGGTGGCCTACAGCATGCTACAGATGGTGC...CTCATGGCCTGCAACAACCTTATCGACCTTGATGCGGATGAGCTGATCTCTGCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR CCA 90 bp | AGCAGAGATCAGCTCATCCGCATCAAGGTCGATAAGGTTGTTGCAGGCCATGAGAGGTGGCTGATCGCCTaGCAGAGAGGCTGTTTTCTG | + |
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Preference number: 4 (lower is better) Translates to: SRDQLIRIKVDKVVAGHERWLIA*QRGCFL Trigger: CAGAAAACAGCCTCTCTGCCAGGCGATCAGCCACCT...CTCATGGCCTGCAACAACCTTATCGACCTTGATGCGGATGAGCTGATCTCTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR GCA 90 bp | GGGCAGGTGTCCATTGTGAGTGTCAGTGTCCTTAGAGAAGGAACTCCTTTAATGGCACCTGGAAGTTTCTaGAGGGCTTCCCCGTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: GQVSIVSVSVLREGTPLMAPGSF*RASPSA Trigger: TGCTGACGGGGAAGCCCTGCAGAAACTTCCAGGTGC...CATTAAAGGAGTTCCTTCTCTAAGGACACTGACACTCACAATGGACACCTGCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR CCA 90 bp | GTGAGTGTCAGTGTCCTTAGAGAAGGAACTCCTTTAATGGCTGAGGGACCTCCTAGCCAGAAGGTCTCATaGTCGTGCTCCACCATCAGC | + |
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Preference number: 4 (lower is better) Translates to: VSVSVLREGTPLMAEGPPSQKVS*SCSTIS Trigger: GCTGATGGTGGAGCACGACCATGAGACCTTCTGGCT...AGGAGGTCCCTCAGCCATTAAAGGAGTTCCTTCTCTAAGGACACTGACACTCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR CCA 90 bp | GCAGGCAGCAGAGATCAGCTCATCCGCATCAAGGTCGATAAGGTTGTTGCAGGCTTCTGCAGGAAGAACTaGAAGAGCCAGAAGGTCTCA | + |
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Preference number: 4 (lower is better) Translates to: AGSRDQLIRIKVDKVVAGFCRKN*KSQKVS Trigger: TGAGACCTTCTGGCTCTTCCAGTTCTTCCTGCAGAA...GCCTGCAACAACCTTATCGACCTTGATGCGGATGAGCTGATCTCTGCTGCCTGC 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR TCA 90 bp | GTGAGTGTCAGTGTCCTTAGAGAAGGAACTCCTTTAATGGCTGAGGGACCTCCTTTCTCTTCTCCAGAATaGAGGTGGCTGATCGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: VSVSVLREGTPLMAEGPPFSSPE*RWLIAW Trigger: CCAGGCGATCAGCCACCTTCATTCTGGAGAAGAGAA...AGGAGGTCCCTCAGCCATTAAAGGAGTTCCTTCTCTAAGGACACTGACACTCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR TCA 90 bp | GAGATCAGCTCATCCGCATCAAGGTCGATAAGGTTGTTGCAGGCCATGAGAATGACGAGTAGTAGCCTGTaGGGAACTTCCAGGCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: EISSSASRSIRLLQAMRMTSSSL*GTSRLL Trigger: CAGAAGCCTGGAAGTTCCTCACAGGCTACTACTCGT...CATTCTCATGGCCTGCAACAACCTTATCGACCTTGATGCGGATGAGCTGATCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR TCA 90 bp | AGTGTCAGTGTCCTTAGAGAAGGAACTCCTTTAATGGCTGAGGGACCTCCTTTTTGTTGCTGTCCACCATaGGCCGCTCATCCCGTGAAC | + |
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Preference number: 4 (lower is better) Translates to: SVSVLREGTPLMAEGPPFCCCPP*AAHPVN Trigger: GTTCACGGGATGAGCGGCTCATGGTGGACAGCAACA...AAAAGGAGGTCCCTCAGCCATTAAAGGAGTTCCTTCTCTAAGGACACTGACACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR TCA 90 bp | GATCAGCTCATCCGCATCAAGGTCGATAAGGTTGTTGCAGGCCATGAGAATGGCGCAAATGAAGTCTCGTaGCTTGGCCAAGTGACCATT | + |
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Preference number: 4 (lower is better) Translates to: DQLIRIKVDKVVAGHENGANEVS*LGQVTI Trigger: AATGGTCACTTGGCCAAGTCACGAGACTTCATTTGC...GCCATTCTCATGGCCTGCAACAACCTTATCGACCTTGATGCGGATGAGCTGATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR TCA 90 bp | GTGAGTGTCAGTGTCCTTAGAGAAGGAACTCCTTTAATGGCTGAGGGACCTCCTCTGAGCCCTTCCCTTTaGGGTGTTCAGCAAATTCAG | + |
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Preference number: 4 (lower is better) Translates to: VSVSVLREGTPLMAEGPPLSPSL*GVQQIQ Trigger: CTGAATTTGCTGAACACCTCAAAGGGAAGGGCTCAG...AGGAGGTCCCTCAGCCATTAAAGGAGTTCCTTCTCTAAGGACACTGACACTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR TCA 90 bp | GATCAGCTCATCCGCATCAAGGTCGATAAGGTTGTTGCAGGCCATGAGAATGGCCATCATCGAAGGTTTTaGAGGCACGCTGGAAGCAAA | + |
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Preference number: 4 (lower is better) Translates to: DQLIRIKVDKVVAGHENGHHRRF*RHAGSK Trigger: TTTGCTTCCAGCGTGCCTTCAAAACCTTCGATGATG...GCCATTCTCATGGCCTGCAACAACCTTATCGACCTTGATGCGGATGAGCTGATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR GCA 90 bp | GAGATCAGCTCATCCGCATCAAGGTCGATAAGGTTGTTGCAGGCCATGAGAATGAAGGTCTCATGGTCGTaGTCCACCATCAGCTGGAAA | + |
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Preference number: 4 (lower is better) Translates to: EISSSASRSIRLLQAMRMKVSWS*STISWK Trigger: TTTCCAGCTGATGGTGGAGCACGACCATGAGACCTT...CATTCTCATGGCCTGCAACAACCTTATCGACCTTGATGCGGATGAGCTGATCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR GCA 90 bp | AGCAGAGATCAGCTCATCCGCATCAAGGTCGATAAGGTTGTTGCAGGCCATGAGCTGTGCTCTGTTTTCTaGAGGAAGAACTGGAAGAGC | + |
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Preference number: 4 (lower is better) Translates to: SRDQLIRIKVDKVVAGHELCSVF*RKNWKS Trigger: GCTCTTCCAGTTCTTCCTGCAGAAAACAGAGCACAG...CTCATGGCCTGCAACAACCTTATCGACCTTGATGCGGATGAGCTGATCTCTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR GCA 90 bp | GTGAGTGTCAGTGTCCTTAGAGAAGGAACTCCTTTAATGGCTGAGGGACCTCCTAGGCTTCAACTCTGTTaGCTGAGACCAGGATACCCT | + |
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Preference number: 4 (lower is better) Translates to: VSVSVLREGTPLMAEGPPRLQLC*LRPGYP Trigger: AGGGTATCCTGGTCTCAGGCAACAGAGTTGAAGCCT...AGGAGGTCCCTCAGCCATTAAAGGAGTTCCTTCTCTAAGGACACTGACACTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR GCA 90 bp | AGCAGAGATCAGCTCATCCGCATCAAGGTCGATAAGGTTGTTGCAGGCCATGAGTTGATGACACAGCTGTaGTCTGTTTTCTGCAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: SRDQLIRIKVDKVVAGHELMTQL*SVFCRK Trigger: CTTCCTGCAGAAAACAGAGCACAGCTGTGTCATCAA...CTCATGGCCTGCAACAACCTTATCGACCTTGATGCGGATGAGCTGATCTCTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR CCA 90 bp | AGTGTCAGTGTCCTTAGAGAAGGAACTCCTTTAATGGCTGAGGGACCTCCTTTTGTTTTGAAGGCACGCTaGAAGCAAAGGCAGAACCAC | + |
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Preference number: 4 (lower is better) Translates to: SVSVLREGTPLMAEGPPFVLKAR*KQRQNH Trigger: GTGGTTCTGCCTTTGCTTCCAGCGTGCCTTCAAAAC...AAAAGGAGGTCCCTCAGCCATTAAAGGAGTTCCTTCTCTAAGGACACTGACACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR GCA 90 bp | GGGCAGGTGTCCATTGTGAGTGTCAGTGTCCTTAGAGAAGGAACTCCTTTAATGACTCAGCCTTTGTGTTaGAGACATAACTCAGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: GQVSIVSVSVLREGTPLMTQPLC*RHNSAA Trigger: TGCTGCTGAGTTATGTCTGCAACACAAAGGCTGAGT...CATTAAAGGAGTTCCTTCTCTAAGGACACTGACACTCACAATGGACACCTGCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS CCA 90 bp | CAGCACCTGGAAGTTTCTGCAGGGCTTCCCCGTCAGCAGGACCTGTaGGCAGCCAGCAGGCTTCAACTCTGTTGCCTGAGACCAGGATAC | + |
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Preference number: 5 (lower is better) Translates to: QHLEVSAGLPRQQDL*AASRLQLCCLRPGY Trigger: GTATCCTGGTCTCAGGCAACAGAGTTGAAGCCTGCTGGCTGCCCACAGGTCCTGCTGACGGGGAAGCCCTGCAGAAACTTCCAGGTGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS CCA 90 bp | CCCTCCCAGAGCCTCCAGACATCATCGAAGGTTTTGAAGGCACGCTaGAAGCAAAGGCAGAACCACGGGAAGAGGGACTGCACAGCCCCT | + |
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Preference number: 5 (lower is better) Translates to: PSQSLQTSSKVLKAR*KQRQNHGKRDCTAP Trigger: AGGGGCTGTGCAGTCCCTCTTCCCGTGGTTCTGCCTTTGCTTCCAGCGTGCCTTCAAAACCTTCGATGATGTCTGGAGGCTCTGGGAGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS CCA 90 bp | ACCTCCCAGAGCCTCCAGACATCATCGAAGGTTTTGAAGGCACGCTaGAAGCAAAGGCAGAACCACGGGAAGAGGGACTGCACAGCCCCT | + |
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Preference number: 5 (lower is better) Translates to: TSQSLQTSSKVLKAR*KQRQNHGKRDCTAP Trigger: AGGGGCTGTGCAGTCCCTCTTCCCGTGGTTCTGCCTTTGCTTCCAGCGTGCCTTCAAAACCTTCGATGATGTCTGGAGGCTCTGGGAGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040217.6 |
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| CDS TCA 90 bp | ATAGTTCCTCCTCCTGTTGCTGTCCACCATGAGCCGCTCATCCCGTaGACTCTGCCACGAGTAGTAGCCTGTGAGGAACTTCCAGGCTTC | + |
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Preference number: 5 (lower is better) Translates to: IVPPPVAVHHEPLIP*TLPRVVACEELPGF Trigger: GAAGCCTGGAAGTTCCTCACAGGCTACTACTCGTGGCAGAGTTCACGGGATGAGCGGCTCATGGTGGACAGCAACAGGAGGAGGAACTAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040217.6 ENSMUST00000213847.2 |
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| CDS CCA 90 bp | CCGATGTTGATGACACAGCTGTGCTCTGTTTTCTGCAGGAAGAACTaGAAGAGCCAGAAGGTCTCATGGTCGTGCTCCACCATCAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: PMLMTQLCSVFCRKN*KSQKVSWSCSTISW Trigger: CCAGCTGATGGTGGAGCACGACCATGAGACCTTCTGGCTCTTCCAGTTCTTCCTGCAGAAAACAGAGCACAGCTGTGTCATCAACATCGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040217.6 ENSMUST00000213847.2 |
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| CDS-3UTR CAA 90 bp | GCAGGCAGCAGAGATCAGCTCATCCGCATCAAGGTCGATAAGGTTGTTGCAGGCTTGCCTACACCGATGTaGATGACACAGCTGTGCTCT | + |
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Preference number: 5 (lower is better) Translates to: AGSRDQLIRIKVDKVVAGLPTPM*MTQLCS Trigger: AGAGCACAGCTGTGTCATCAACATCGGTGTAGGCAA...GCCTGCAACAACCTTATCGACCTTGATGCGGATGAGCTGATCTCTGCTGCCTGC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR CAA 90 bp | AGCAGAGATCAGCTCATCCGCATCAAGGTCGATAAGGTTGTTGCAGGCCATGAGACATCATCGAAGGTTTaGAAGGCACGCTGGAAGCAA | + |
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Preference number: 5 (lower is better) Translates to: SRDQLIRIKVDKVVAGHETSSKV*KARWKQ Trigger: TTGCTTCCAGCGTGCCTTCAAAACCTTCGATGATGT...CTCATGGCCTGCAACAACCTTATCGACCTTGATGCGGATGAGCTGATCTCTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS GCA 90 bp | GCATCACCATCTCATGGAAGCCTCGCTGGTACTCAGCCTTTGTGTTaGAGACATAACTCAGCAGCAGGGTCTTCTCCAATTTCTTCTTGT | + |
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Preference number: 5 (lower is better) Translates to: ASPSHGSLAGTQPLC*RHNSAAGSSPISSC Trigger: ACAAGAAGAAATTGGAGAAGACCCTGCTGCTGAGTTATGTCTGCAACACAAAGGCTGAGTACCAGCGAGGCTTCCATGAGATGGTGATGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040217.6 ENSMUST00000213847.2 |
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| CDS-3UTR CAA 90 bp | GATCAGCTCATCCGCATCAAGGTCGATAAGGTTGTTGCAGGCCATGAGAATGGCTTGTCTATAAGCACATaGCCCAGGGGATCTTTATCA | + |
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Preference number: 5 (lower is better) Translates to: DQLIRIKVDKVVAGHENGLSIST*PRGSLS Trigger: TGATAAAGATCCCCTGGGCAATGTGCTTATAGACAA...GCCATTCTCATGGCCTGCAACAACCTTATCGACCTTGATGCGGATGAGCTGATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS-3UTR CAA 90 bp | GGGCAGGTGTCCATTGTGAGTGTCAGTGTCCTTAGAGAAGGAACTCCTTTAATGGCTGGTACTCAGCCTTaGTGTTGCAGACATAACTCA | + |
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Preference number: 5 (lower is better) Translates to: GQVSIVSVSVLREGTPLMAGTQP*CCRHNS Trigger: TGAGTTATGTCTGCAACACAAAGGCTGAGTACCAGC...CATTAAAGGAGTTCCTTCTCTAAGGACACTGACACTCACAATGGACACCTGCCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS TCA 90 bp | CTTTCCAGGATGTTAATGCAAATGAAGTCTCGTGACTTGGCCAAGTaGCCATTCTCATCGAAGAAGCTGTCCCATTCTGCCTTGTCAATG | + |
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Preference number: 5 (lower is better) Translates to: LSRMLMQMKSRDLAK*PFSSKKLSHSALSM Trigger: CATTGACAAGGCAGAATGGGACAGCTTCTTCGATGAGAATGGTCACTTGGCCAAGTCACGAGACTTCATTTGCATTAACATCCTGGAAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040217.6 ENSMUST00000213847.2 |
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| CDS GCA 72 bp | GTAGCATGCTGTAGGCCACCAGCACCTGGAAGTTTCTaGAGGGCTTCCCCGTCAGCAGGACCTCCCAGAGCC | + |
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Preference number: 6 (lower is better) Translates to: VACCRPPAPGSF*RASPSAGPPRA Trigger: GGCTCTGGGAGGTCCTGCTGACGGGGAAGCCCTGCAGAAACTTCCAGGTGCTGGTGGCCTACAGCATGCTAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040217.6 |
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| CDS GCA 72 bp | GTAGCATGCTGTAGGCCACCAGCACCTGGAAGTTTCTaGAGGGCTTCCCCGTCAGCAGGACCTGTGGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: VACCRPPAPGSF*RASPSAGPVGS Trigger: GCTGCCCACAGGTCCTGCTGACGGGGAAGCCCTGCAGAAACTTCCAGGTGCTGGTGGCCTACAGCATGCTAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS CAA 72 bp | GCAGGACCTGTGGGCAGCCAGCAGGCTTCAACTCTGTaGCCTGAGACCAGGATACCCTCCCAGAGCCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: AGPVGSQQASTL*PETRIPSQSLQ Trigger: CTGGAGGCTCTGGGAGGGTATCCTGGTCTCAGGCAACAGAGTTGAAGCCTGCTGGCTGCCCACAGGTCCTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS GCA 72 bp | ACTCCAGAAGCGCCTGCTCGCGCACCATCTGTAGCATaGTGTAGGCCACCAGCACCTGGAAGTTTCTGCAGG | + |
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Preference number: 6 (lower is better) Translates to: TPEAPARAPSVA*CRPPAPGSFCR Trigger: CCTGCAGAAACTTCCAGGTGCTGGTGGCCTACAGCATGCTACAGATGGTGCGCGAGCAGGCGCTTCTGGAGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040217.6 ENSMUST00000213847.2 |
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| CDS TCA 72 bp | GCTCATCCCGTGAACTCTGCCACGAGTAGTAGCCTGTaGGGAACTTCCAGGCTTCTGTCCTCACGAAGGGGT | + |
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Preference number: 6 (lower is better) Translates to: AHPVNSATSSSL*GTSRLLSSRRG Trigger: ACCCCTTCGTGAGGACAGAAGCCTGGAAGTTCCTCACAGGCTACTACTCGTGGCAGAGTTCACGGGATGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040217.6 ENSMUST00000213847.2 |
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| CDS TCA 72 bp | CCTCCTGTTGCTGTCCACCATGAGCCGCTCATCCCGTaGACTCTGCCACGAGTAGTAGCCTGTGAGGAACTT | + |
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Preference number: 6 (lower is better) Translates to: PPVAVHHEPLIP*TLPRVVACEEL Trigger: AAGTTCCTCACAGGCTACTACTCGTGGCAGAGTTCACGGGATGAGCGGCTCATGGTGGACAGCAACAGGAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040217.6 ENSMUST00000213847.2 |
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| CDS TCA 72 bp | AAGGCAGAACCACGGGAAGAGGGACTGCACAGCCCCTaGGCCCTTCCCTTTGAGGTGTTCAGCAAATTCAGG | + |
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Preference number: 6 (lower is better) Translates to: KAEPREEGLHSP*ALPFEVFSKFR Trigger: CCTGAATTTGCTGAACACCTCAAAGGGAAGGGCTCAGGGGCTGTGCAGTCCCTCTTCCCGTGGTTCTGCCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040217.6 ENSMUST00000213847.2 |
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| CDS TCA 72 bp | GGACCTCCCAGAGCCTCCAGACATCATCGAAGGTTTTaGAGGCACGCTGGAAGCAAAGGCAGAACCACGGGA | + |
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Preference number: 6 (lower is better) Translates to: GPPRASRHHRRF*RHAGSKGRTTG Trigger: TCCCGTGGTTCTGCCTTTGCTTCCAGCGTGCCTTCAAAACCTTCGATGATGTCTGGAGGCTCTGGGAGGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040217.6 |
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| CDS CAA 72 bp | AGGACCTCCCAGAGCCTCCAGACATCATCGAAGGTTTaGAAGGCACGCTGGAAGCAAAGGCAGAACCACGGG | + |
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Preference number: 6 (lower is better) Translates to: RTSQSLQTSSKV*KARWKQRQNHG Trigger: CCCGTGGTTCTGCCTTTGCTTCCAGCGTGCCTTCAAAACCTTCGATGATGTCTGGAGGCTCTGGGAGGTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040217.6 |
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| CDS TCA 72 bp | TACCCTCCCAGAGCCTCCAGACATCATCGAAGGTTTTaGAGGCACGCTGGAAGCAAAGGCAGAACCACGGGA | + |
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Preference number: 6 (lower is better) Translates to: YPPRASRHHRRF*RHAGSKGRTTG Trigger: TCCCGTGGTTCTGCCTTTGCTTCCAGCGTGCCTTCAAAACCTTCGATGATGTCTGGAGGCTCTGGGAGGGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS CCA 72 bp | AGCCTCCAGACATCATCGAAGGTTTTGAAGGCACGCTaGAAGCAAAGGCAGAACCACGGGAAGAGGGACTGC | + |
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Preference number: 6 (lower is better) Translates to: SLQTSSKVLKAR*KQRQNHGKRDC Trigger: GCAGTCCCTCTTCCCGTGGTTCTGCCTTTGCTTCCAGCGTGCCTTCAAAACCTTCGATGATGTCTGGAGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040217.6 ENSMUST00000213847.2 |
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| CDS CAA 72 bp | ATACCCTCCCAGAGCCTCCAGACATCATCGAAGGTTTaGAAGGCACGCTGGAAGCAAAGGCAGAACCACGGG | + |
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Preference number: 6 (lower is better) Translates to: IPSQSLQTSSKV*KARWKQRQNHG Trigger: CCCGTGGTTCTGCCTTTGCTTCCAGCGTGCCTTCAAAACCTTCGATGATGTCTGGAGGCTCTGGGAGGGTAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213847.2 |
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| CDS CAA 90 bp | ACGCAGGCAGCAGAGATCAGCTCATCCGCATCAAGGTCGATAAGGTaGTTGCAGGCCATGAGAATGGCGTCACCGCTCATACACTCCAGA | + |
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Preference number: 6 (lower is better) Translates to: TQAAEISSSASRSIR*LQAMRMASPLIHSR Trigger: TCTGGAGTGTATGAGCGGTGACGCCATTCTCATGGCCTGCAACAACCTTATCGACCTTGATGCGGATGAGCTGATCTCTGCTGCCTGCGT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040217.6 |
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| CDS CCA 72 bp | ATGACACAGCTGTGCTCTGTTTTCTGCAGGAAGAACTaGAAGAGCCAGAAGGTCTCATGGTCGTGCTCCACC | + |
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Preference number: 6 (lower is better) Translates to: MTQLCSVFCRKN*KSQKVSWSCST Trigger: GGTGGAGCACGACCATGAGACCTTCTGGCTCTTCCAGTTCTTCCTGCAGAAAACAGAGCACAGCTGTGTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040217.6 ENSMUST00000213847.2 |
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| CDS CAA 72 bp | GCAGAGATCAGCTCATCCGCATCAAGGTCGATAAGGTaGTTGCAGGCCATGAGAATGGCGTCACCGCTCATA | + |
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Preference number: 6 (lower is better) Translates to: AEISSSASRSIR*LQAMRMASPLI Trigger: TATGAGCGGTGACGCCATTCTCATGGCCTGCAACAACCTTATCGACCTTGATGCGGATGAGCTGATCTCTGC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040217.6 |
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| CDS TCA 72 bp | TCTGGATGTCGTACGCGATGTTGTTCCGAGTCTCTGTaGAGTTCCCATGTAAGTTTTCCAGCAGGGGCTGGA | + |
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Preference number: 6 (lower is better) Translates to: SGCRTRCCSESL*SSHVSFPAGAG Trigger: TCCAGCCCCTGCTGGAAAACTTACATGGGAACTTCACAGAGACTCGGAACAACATCGCGTACGACATCCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040217.6 ENSMUST00000213847.2 |
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| CDS CCA 72 bp | AGCACATTGCCCAGGGGATCTTTATCATACAGCCTCTaGATGTCGTACGCGATGTTGTTCCGAGTCTCTGTG | + |
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Preference number: 6 (lower is better) Translates to: STLPRGSLSYSL*MSYAMLFRVSV Trigger: CACAGAGACTCGGAACAACATCGCGTACGACATCCAGAGGCTGTATGATAAAGATCCCCTGGGCAATGTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040217.6 ENSMUST00000213847.2 |
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| CDS CAA 90 bp | CCCAGGGGATCTTTATCATACAGCCTCTGGATGTCGTACGCGATGTaGTTCCGAGTCTCTGTGAAGTTCCCATGTAAGTTTTCCAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: PRGSLSYSLWMSYAM*FRVSVKFPCKFSSR Trigger: CCTGCTGGAAAACTTACATGGGAACTTCACAGAGACTCGGAACAACATCGCGTACGACATCCAGAGGCTGTATGATAAAGATCCCCTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040217.6 ENSMUST00000213847.2 |
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| CDS GCA 72 bp | TCTCATGGAAGCCTCGCTGGTACTCAGCCTTTGTGTTaGAGACATAACTCAGCAGCAGGGTCTTCTCCAATT | + |
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Preference number: 6 (lower is better) Translates to: SHGSLAGTQPLC*RHNSAAGSSPI Trigger: AATTGGAGAAGACCCTGCTGCTGAGTTATGTCTGCAACACAAAGGCTGAGTACCAGCGAGGCTTCCATGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040217.6 ENSMUST00000213847.2 |
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| CDS CAA 90 bp | GTGATCAGGCTGTTGAGCATGTCCAGATTCTTGCCTACACCGATGTaGATGACACAGCTGTGCTCTGTTTTCTGCAGGAAGAACTGGAAG | + |
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Preference number: 6 (lower is better) Translates to: VIRLLSMSRFLPTPM*MTQLCSVFCRKNWK Trigger: CTTCCAGTTCTTCCTGCAGAAAACAGAGCACAGCTGTGTCATCAACATCGGTGTAGGCAAGAATCTGGACATGCTCAACAGCCTGATCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040217.6 ENSMUST00000213847.2 |
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| CDS CAA 72 bp | AGTAGAGTGATCAGGCTGTTGAGCATGTCCAGATTCTaGCCTACACCGATGTTGATGACACAGCTGTGCTCT | + |
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Preference number: 6 (lower is better) Translates to: SRVIRLLSMSRF*PTPMLMTQLCS Trigger: AGAGCACAGCTGTGTCATCAACATCGGTGTAGGCAAGAATCTGGACATGCTCAACAGCCTGATCACTCTACT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040217.6 ENSMUST00000213847.2 |
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| CDS CAA 72 bp | TCAGCAAATTCAGGGTCCAGTAGAGTGATCAGGCTGTaGAGCATGTCCAGATTCTTGCCTACACCGATGTTG | + |
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Preference number: 6 (lower is better) Translates to: SANSGSSRVIRL*SMSRFLPTPML Trigger: CAACATCGGTGTAGGCAAGAATCTGGACATGCTCAACAGCCTGATCACTCTACTGGACCCTGAATTTGCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040217.6 ENSMUST00000213847.2 |
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| CDS CAA 90 bp | TTGAGGTGTTCAGCAAATTCAGGGTCCAGTAGAGTGATCAGGCTGTaGAGCATGTCCAGATTCTTGCCTACACCGATGTTGATGACACAG | + |
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Preference number: 6 (lower is better) Translates to: LRCSANSGSSRVIRL*SMSRFLPTPMLMTQ Trigger: CTGTGTCATCAACATCGGTGTAGGCAAGAATCTGGACATGCTCAACAGCCTGATCACTCTACTGGACCCTGAATTTGCTGAACACCTCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040217.6 ENSMUST00000213847.2 |
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| CDS TCA 72 bp | ATGTTAATGCAAATGAAGTCTCGTGACTTGGCCAAGTaGCCATTCTCATCGAAGAAGCTGTCCCATTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: MLMQMKSRDLAK*PFSSKKLSHSA Trigger: GGCAGAATGGGACAGCTTCTTCGATGAGAATGGTCACTTGGCCAAGTCACGAGACTTCATTTGCATTAACAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040217.6 ENSMUST00000213847.2 |
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| CDS TCA 72 bp | TCCCCTTTCCAGGATGTTAATGCAAATGAAGTCTCGTaGCTTGGCCAAGTGACCATTCTCATCGAAGAAGCT | + |
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Preference number: 6 (lower is better) Translates to: SPFQDVNANEVS*LGQVTILIEEA Trigger: AGCTTCTTCGATGAGAATGGTCACTTGGCCAAGTCACGAGACTTCATTTGCATTAACATCCTGGAAAGGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040217.6 ENSMUST00000213847.2 |
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| CDS CAA 72 bp | TCTTTATCATACAGCCTCTGGATGTCGTACGCGATGTaGTTCCGAGTCTCTGTGAAGTTCCCATGTAAGTTT | + |
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Preference number: 6 (lower is better) Translates to: SLSYSLWMSYAM*FRVSVKFPCKF Trigger: AAACTTACATGGGAACTTCACAGAGACTCGGAACAACATCGCGTACGACATCCAGAGGCTGTATGATAAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040217.6 ENSMUST00000213847.2 |
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