RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TBC1D16 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039976

Ensembl transcript IDs: ENSMUST00000036113.4, ENSMUST00000207655.2

Found 377 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCTGGGAGGGCATTCGACTGGGAGTGGACAACCCCTCTCGGTCAATaGTGCGGAAGGCTAAGGCCAGTGGGCTCGTCCCTGAGTGGCGGG +
Preference number: 1 (lower is better)
Translates to: PGRAFDWEWTTPLGQ*CGRLRPVGSSLSGG
Trigger: CCCGCCACTCAGGGACGAGCCCACTGGCCTTAGCCTTCCGCAGCATTGACCGAGAGGGGTTGTCCACTCCCAGTCGAATGCCCTCCCAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 90 bp GACCCTGCCTTGCCCACAGCTTGCGGAGAGACTCCTGGTCTCTGCTaGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTAGCC +
Preference number: 1 (lower is better)
Translates to: DPALPTACGETPGLC*NTPASQQPAFQWLA
Trigger: GGCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAGCAGAGACCAGGAGTCTCTCCGCAAGCTGTGGGCAAGGCAGGGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR CCA 90 bp CCATCCTGCCCTGGCCATCGAAGGCACCAGCTCCAGAGCCTCTCTTaGGCTGGTGTCCTGCACTCAAAGCCAGGCCCCCAGTCATCCCCT +
Preference number: 1 (lower is better)
Translates to: PSCPGHRRHQLQSLS*AGVLHSKPGPQSSP
Trigger: AGGGGATGACTGGGGGCCTGGCTTTGAGTGCAGGACACCAGCCCAAGAGAGGCTCTGGAGCTGGTGCCTTCGATGGCCAGGGCAGGATGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 90 bp GCAGGGTGGCCTCCAGGGATCTCTGCCAGGTTCCTTCCCTCTGTCTaGCCAGCCCCGGGTATGCCTGACACTCCTGGCCTGACTGCAGTA +
Preference number: 1 (lower is better)
Translates to: AGWPPGISARFLPSV*PAPGMPDTPGLTAV
Trigger: TACTGCAGTCAGGCCAGGAGTGTCAGGCATACCCGGGGCTGGCCAGACAGAGGGAAGGAACCTGGCAGAGATCCCTGGAGGCCACCCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR TCA 90 bp CTCTGCCAGGTTCCTTCCCTCTGTCTGGCCAGCCCCGGGTATGCCTaGCACTCCTGGCCTGACTGCAGTAGAAGGGAACTGACAGAGCGG +
Preference number: 1 (lower is better)
Translates to: LCQVPSLCLASPGYA*HSWPDCSRRELTER
Trigger: CCGCTCTGTCAGTTCCCTTCTACTGCAGTCAGGCCAGGAGTGTCAGGCATACCCGGGGCTGGCCAGACAGAGGGAAGGAACCTGGCAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 90 bp CTAGACCCTGCCTTGCCCACAGCTTGCGGAGAGACTCCTGGTCTCTaGTGGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTA +
Preference number: 1 (lower is better)
Translates to: LDPALPTACGETPGL*WNTPASQQPAFQWL
Trigger: TAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAGCAGAGACCAGGAGTCTCTCCGCAAGCTGTGGGCAAGGCAGGGTCTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR GCA 90 bp AAAGGCCTGGTGGCAGCAGGCATCTGCACGCAGCTGCTCAGAAAGTaGAGAGTCCTCAGAAAGGGTCTCCCCCTCCGAGGGCCGTCCATG +
Preference number: 1 (lower is better)
Translates to: KGLVAAGICTQLLRK*RVLRKGLPLRGPSM
Trigger: CATGGACGGCCCTCGGAGGGGGAGACCCTTTCTGAGGACTCTGCACTTTCTGAGCAGCTGCGTGCAGATGCCTGCTGCCACCAGGCCTTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 90 bp GGTCTCTGCTGGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTaGCTAGCCAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCC +
Preference number: 1 (lower is better)
Translates to: GLCWNTPASQQPAFQ*LARHPGLAFQELNS
Trigger: GGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAGCAGAGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR CCA 90 bp GCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAGAGACTCCTaGTCTCTGCTGGAACACCCCAGCCAGCCAGCAGCCTGCATTCCA +
Preference number: 1 (lower is better)
Translates to: ALSRPCLAHSLRRDS*SLLEHPSQPAACIP
Trigger: TGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAGCAGAGACCAGGAGTCTCTCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR GCA 90 bp CTAGGTCCAGCATGGCGGCGGAGGCAGCTTCCAAGCCAGGCCAGATaGCTTTGTCTTGGCTGGGGAGTTATATTCTCCCCCTTCTCCGGG +
Preference number: 1 (lower is better)
Translates to: LGPAWRRRQLPSQAR*LCLGWGVIFSPFSG
Trigger: CCCGGAGAAGGGGGAGAATATAACTCCCCAGCCAAGACAAAGGCATCTGGCCTGGCTTGGAAGCTGCCTCCGCCGCCATGCTGGACCTAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 90 bp CCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACCCTaGGCTAGCCTTTCAGGAGCTGAACTCCAGGGACAGCTGATACCT +
Preference number: 1 (lower is better)
Translates to: PSQPAACIPVASQTP*ASLSGAELQGQLIP
Trigger: AGGTATCAGCTGTCCCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR TCA 90 bp TCCGAGGCCCCGCCCTTTCAATCGGTGATCCCGCCCATCTCATTTTaGGGCCTCGCCCTCTCTCATTCTGAGGGCCCACCCTTCTCATTC +
Preference number: 1 (lower is better)
Translates to: SEAPPFQSVIPPISF*GLALSHSEGPPFSF
Trigger: GAATGAGAAGGGTGGGCCCTCAGAATGAGAGAGGGCGAGGCCTCAAAATGAGATGGGCGGGATCACCGATTGAAAGGGCGGGGCCTCGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR TCA 90 bp CCCCTCCCTTGCCCTCTCCCTTCTCCTTGGAGGGTGAGTCAGAAGTaGGGGCGCCCTTTCCAAGGTAGGCATCATGTCTCAGCAGTGACA +
Preference number: 1 (lower is better)
Translates to: PLPCPLPSPWRVSQK*GRPFQGRHHVSAVT
Trigger: TGTCACTGCTGAGACATGATGCCTACCTTGGAAAGGGCGCCCTCACTTCTGACTCACCCTCCAAGGAGAAGGGAGAGGGCAAGGGAGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 90 bp GGCTGCGCACACCACACCCATCAACCTATTCAGGCCCCAGTGGGTTaGTGTTTCTGCACACACCTTAGATCCTCAGGGGAGGATCCCAGT +
Preference number: 1 (lower is better)
Translates to: GCAHHTHQPIQAPVG*CFCTHLRSSGEDPS
Trigger: ACTGGGATCCTCCCCTGAGGATCTAAGGTGTGTGCAGAAACAGCAACCCACTGGGGCCTGAATAGGTTGATGGGTGTGGTGTGCGCAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 90 bp ATGGCGGCGGAGGCAGCTTCCAAGCCAGGCCAGATGCCTTTGTCTTaGCTGGGGAGTTATATTCTCCCCCTTCTCCGGGACCAAGTATTC +
Preference number: 1 (lower is better)
Translates to: MAAEAASKPGQMPLS*LGSYILPLLRDQVF
Trigger: GAATACTTGGTCCCGGAGAAGGGGGAGAATATAACTCCCCAGCCAAGACAAAGGCATCTGGCCTGGCTTGGAAGCTGCCTCCGCCGCCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 90 bp CATTGGTTTGCTGACTTCAGACCTGGGAGGGCATTCGACTGGGAGTaGACAACCCCTCTCGGTCAATGCTGCGGAAGGCTAAGGCCAGTG +
Preference number: 1 (lower is better)
Translates to: HWFADFRPGRAFDWE*TTPLGQCCGRLRPV
Trigger: CACTGGCCTTAGCCTTCCGCAGCATTGACCGAGAGGGGTTGTCCACTCCCAGTCGAATGCCCTCCCAGGTCTGAAGTCAGCAAACCAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR TCA 90 bp GAGGACACTCAGCAAGGTAGAAGTGCAGGAGAGGCATTGGTTTGCTaGCTTCAGACCTGGGAGGGCATTCGACTGGGAGTGGACAACCCC +
Preference number: 1 (lower is better)
Translates to: EDTQQGRSAGEALVC*LQTWEGIRLGVDNP
Trigger: GGGGTTGTCCACTCCCAGTCGAATGCCCTCCCAGGTCTGAAGTCAGCAAACCAATGCCTCTCCTGCACTTCTACCTTGCTGAGTGTCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 90 bp TTTGGCTGGTTTCCTCTAATTGCATCCAGATTAAGGTTGCTGCTCTaGGCGGGGCCTCTCTCGTCCTCAGAGCAGAGCAGGGCTCCGAGA +
Preference number: 1 (lower is better)
Translates to: FGWFPLIASRLRLLL*AGPLSSSEQSRAPR
Trigger: TCTCGGAGCCCTGCTCTGCTCTGAGGACGAGAGAGGCCCCGCGCAGAGCAGCAACCTTAATCTGGATGCAATTAGAGGAAACCAGCCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 90 bp CACTCAAAGCCAGGCCCCCAGTCATCCCCTTCTGAATGTAGCATGTaGCCCTCCCTAACCCGGGTCGGTTTGATCAGCAACCACATAGCT +
Preference number: 1 (lower is better)
Translates to: HSKPGPQSSPSECSM*PSLTRVGLISNHIA
Trigger: AGCTATGTGGTTGCTGATCAAACCGACCCGGGTTAGGGAGGGGCACATGCTACATTCAGAAGGGGATGACTGGGGGCCTGGCTTTGAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 90 bp ACCCTGACAGCAAGCATTCCTCTTCCCACTTATTTACTGCCATCCTaGCCTGGCCATCGAAGGCACCAGCTCCAGAGCCTCTCTTGGGCT +
Preference number: 1 (lower is better)
Translates to: TLTASIPLPTYLLPS*PGHRRHQLQSLSWA
Trigger: AGCCCAAGAGAGGCTCTGGAGCTGGTGCCTTCGATGGCCAGGGCAGGATGGCAGTAAATAAGTGGGAAGAGGAATGCTTGCTGTCAGGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 90 bp CAGTTTCCCTATGTCGTCTCTGGTGGCCCAGCTGGGTGGCAGTCCTaGCTCCCCTATAACCCAGGCCATAGCATAGCCCTGCATAAGTTT +
Preference number: 1 (lower is better)
Translates to: QFPYVVSGGPAGWQS*LPYNPGHSIALHKF
Trigger: AAACTTATGCAGGGCTATGCTATGGCCTGGGTTATAGGGGAGCCAGGACTGCCACCCAGCTGGGCCACCAGAGACGACATAGGGAAACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR TCA 90 bp TTCCTAGAAGGACTCACATTCTCAGGAGGGCCTTCAGATAGGGGATaGGCTCACGGAGCAAGGGAAGCTGAGAAAGGAGGCCTAGAGGCC +
Preference number: 1 (lower is better)
Translates to: FLEGLTFSGGPSDRG*AHGAREAEKGGLEA
Trigger: GGCCTCTAGGCCTCCTTTCTCAGCTTCCCTTGCTCCGTGAGCTCATCCCCTATCTGAAGGCCCTCCTGAGAATGTGAGTCCTTCTAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR TCA 90 bp TGGACTGCAGTCTGTGCCAGCCAGGTGCACAGAGTTCTAGGTCACTaGGGCTCTGCCCTGCATTTCTGTTACTGGGGTGATAGGCAGTGT +
Preference number: 1 (lower is better)
Translates to: WTAVCASQVHRVLGH*GSALHFCYWGDRQC
Trigger: ACACTGCCTATCACCCCAGTAACAGAAATGCAGGGCAGAGCCTCAGTGACCTAGAACTCTGTGCACCTGGCTGGCACAGACTGCAGTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 90 bp GCTGAGGCGGCTTTGTGGCTCATTTTTCTTCAGGGTAGGCGTGGGTaGCACAGAGTGAACGTTACAGAGAGATTTGCCCTCTGCGGAGGA +
Preference number: 1 (lower is better)
Translates to: AEAALWLIFLQGRRG*HRVNVTERFALCGG
Trigger: TCCTCCGCAGAGGGCAAATCTCTCTGTAACGTTCACTCTGTGCCACCCACGCCTACCCTGAAGAAAAATGAGCCACAAAGCCGCCTCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 90 bp AGTGATGAGGCAAACTACACAAGACCAGAACCACCCAACCTGGACTaGAGTCTGTGCCAGCCAGGTGCACAGAGTTCTAGGTCACTGAGG +
Preference number: 1 (lower is better)
Translates to: SDEANYTRPEPPNLD*SLCQPGAQSSRSLR
Trigger: CCTCAGTGACCTAGAACTCTGTGCACCTGGCTGGCACAGACTGCAGTCCAGGTTGGGTGGTTCTGGTCTTGTGTAGTTTGCCTCATCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 90 bp CATGCCAGTCTTGCAGCTGTGACCATGAAGCTTCGCAAGTGTGCTTaGTTCACTCAGACAACAATCCTGCTCCTCTCTGTCCCCTGGCAT +
Preference number: 1 (lower is better)
Translates to: HASLAAVTMKLRKCA*FTQTTILLLSVPWH
Trigger: ATGCCAGGGGACAGAGAGGAGCAGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGTCACAGCTGCAAGACTGGCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR CCA 90 bp TTATTAAAAGGAAGAGAGCATCCCAGAAGTTCCCTAGGTCCAGCATaGCGGCGGAGGCAGCTTCCAAGCCAGGCCAGATGCCTTTGTCTT +
Preference number: 1 (lower is better)
Translates to: LLKGREHPRSSLGPA*RRRQLPSQARCLCL
Trigger: AAGACAAAGGCATCTGGCCTGGCTTGGAAGCTGCCTCCGCCGCCATGCTGGACCTAGGGAACTTCTGGGATGCTCTCTTCCTTTTAATAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 90 bp GGAATTGAACACAATGTATTTAAAGGCCTGGTGGCAGCAGGCATCTaGACGCAGCTGCTCAGAAAGTGCAGAGTCCTCAGAAAGGGTCTC +
Preference number: 1 (lower is better)
Translates to: GIEHNVFKGLVAAGI*TQLLRKCRVLRKGL
Trigger: GAGACCCTTTCTGAGGACTCTGCACTTTCTGAGCAGCTGCGTGCAGATGCCTGCTGCCACCAGGCCTTTAAATACATTGTGTTCAATTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 90 bp CTATCTTCCCACCTGGAATTGAACACAATGTATTTAAAGGCCTGGTaGCAGCAGGCATCTGCACGCAGCTGCTCAGAAAGTGCAGAGTCC +
Preference number: 1 (lower is better)
Translates to: LSSHLELNTMYLKAW*QQASARSCSESAES
Trigger: GGACTCTGCACTTTCTGAGCAGCTGCGTGCAGATGCCTGCTGCCACCAGGCCTTTAAATACATTGTGTTCAATTCCAGGTGGGAAGATAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR TCA 90 bp AGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGGACAGCTaGTACCTAATGTCAGTTCTAGAGCCCGATTTTGTCATCATGACA +
Preference number: 1 (lower is better)
Translates to: RHPGLAFQELNSRDS*YLMSVLEPDFVIMT
Trigger: TGTCATGATGACAAAATCGGGCTCTAGAACTGACATTAGGTATCAGCTGTCCCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR CCA 90 bp ATGCTATCTTCCCACCTGGAATTGAACACAATGTATTTAAAGGCCTaGTGGCAGCAGGCATCTGCACGCAGCTGCTCAGAAAGTGCAGAG +
Preference number: 1 (lower is better)
Translates to: MLSSHLELNTMYLKA*WQQASARSCSESAE
Trigger: CTCTGCACTTTCTGAGCAGCTGCGTGCAGATGCCTGCTGCCACCAGGCCTTTAAATACATTGTGTTCAATTCCAGGTGGGAAGATAGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 90 bp CCTTCCTTTTCTTTCTCTTTTGGACAGGAGTCTTCATGCCAGTCTTaGAGCTGTGACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCA +
Preference number: 1 (lower is better)
Translates to: PSFSFSFGQESSCQS*SCDHEASQVCLVHS
Trigger: TGAGTGAACCAAGCACACTTGCGAAGCTTCATGGTCACAGCTGCAAGACTGGCATGAAGACTCCTGTCCAAAAGAGAAAGAAAAGGAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR TCA 90 bp AAGCTGTCCTCCTTATCCTCAAAGTGTGGAAGGAAGACAGTCATGTaGCTTGATTTCTGCAAACCTGAAATGCTATCTTCCCACCTGGAA +
Preference number: 1 (lower is better)
Translates to: KLSSLSSKCGRKTVM*LDFCKPEMLSSHLE
Trigger: TTCCAGGTGGGAAGATAGCATTTCAGGTTTGCAGAAATCAAGTCACATGACTGTCTTCCTTCCACACTTTGAGGATAAGGAGGACAGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CAA 90 bp GCCATCCTGCCCTGGCCATCGAAGGCACCAGCTCCAGAGCCTCTCTaGGGCTGGTGTCCTGCACTCAAAGCCAGGCCCCCAGTCATCCCC +
Preference number: 2 (lower is better)
Translates to: AILPWPSKAPAPEPL*GWCPALKARPPVIP
Trigger: GGGGATGACTGGGGGCCTGGCTTTGAGTGCAGGACACCAGCCCAAGAGAGGCTCTGGAGCTGGTGCCTTCGATGGCCAGGGCAGGATGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR-3UTR GCA 90 bp CTAGACCCTGCCTTGCCCACAGCTTGCGGAGAGACTCCTGGTCTCTGCTGGAACCCTCCCCCACCCCCTTaGCCAGGACCTCATGGCGGT +
Preference number: 2 (lower is better)
Translates to: LDPALPTACGETPGLCWNPPPPP*PGPHGG
Trigger: ACCGCCATGAGGTCCTGGGCAAGGGGGTGGGGGAGG...GTTCCAGCAGAGACCAGGAGTCTCTCCGCAAGCTGTGGGCAAGGCAGGGTCTAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR-3UTR GCA 90 bp CTGCCCTGGCCATCGAAGGCACCAGCTCCAGAGCCTCTCTTGGGCTGGTGTCCTCACACCATGTCTGGCTaGAGAGGCCCCAGCTGGCCT +
Preference number: 2 (lower is better)
Translates to: LPWPSKAPAPEPLLGWCPHTMSG*RGPSWP
Trigger: AGGCCAGCTGGGGCCTCTGCAGCCAGACATGGTGTG...AGGACACCAGCCCAAGAGAGGCTCTGGAGCTGGTGCCTTCGATGGCCAGGGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR-3UTR GCA 90 bp TTCCAGTGGCTAGCCAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGCCTCCCCCACCCCCTTaGCCAGGACCTCATGGCGGT +
Preference number: 2 (lower is better)
Translates to: FQWLARHPGLAFQELNSRPPPPP*PGPHGG
Trigger: ACCGCCATGAGGTCCTGGGCAAGGGGGTGGGGGAGG...CCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCACTGGAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR-3UTR GCA 90 bp AGACAACAATCCTGCTCCTCTCTGTCCCCTGGCATGGGTGTGAGCACGAGGCCCAGCCAGCCAGCAGCCTaGATTCCAGTGGCTAGCCAG +
Preference number: 2 (lower is better)
Translates to: RQQSCSSLSPGMGVSTRPSQPAA*IPVASQ
Trigger: CTGGCTAGCCACTGGAATGCAGGCTGCTGGCTGGCT...GGGCCTCGTGCTCACACCCATGCCAGGGGACAGAGAGGAGCAGGATTGTTGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR-3UTR GCA 90 bp ATGGGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAAGCCAGCCAGCAGCCTaGATTCCAGTGGCTAGCCAG +
Preference number: 2 (lower is better)
Translates to: MGVSTRPFLDPALPTACGSQPAA*IPVASQ
Trigger: CTGGCTAGCCACTGGAATGCAGGCTGCTGGCTGGCT...TCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACCCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR-3UTR GCA 90 bp CTGCCCTGGCCATCGAAGGCACCAGCTCCAGAGCCTCTCTTGGGCTGGTGTCCTCTCAGACAACAATCCTaGTCCTCTCTGTCCCCTGGC +
Preference number: 2 (lower is better)
Translates to: LPWPSKAPAPEPLLGWCPLRQQS*SSLSPG
Trigger: GCCAGGGGACAGAGAGGAGCAGGATTGTTGTCTGAG...AGGACACCAGCCCAAGAGAGGCTCTGGAGCTGGTGCCTTCGATGGCCAGGGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR-3UTR CCA 90 bp CTGGGAGGGCATTCGACTGGGAGTGGACAACCCCTCTCGGTCAATGCTGCGGAATTCCTTCCCTCTGTCTaGCCAGCCCCGGGTATGCCT +
Preference number: 2 (lower is better)
Translates to: LGGHSTGSGQPLSVNAAEFLPSV*PAPGMP
Trigger: AGGCATACCCGGGGCTGGCCAGACAGAGGGAAGGAA...TTCCGCAGCATTGACCGAGAGGGGTTGTCCACTCCCAGTCGAATGCCCTCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CAA 90 bp TCCAGCATGGCGGCGGAGGCAGCTTCCAAGCCAGGCCAGATGCCTTaGTCTTGGCTGGGGAGTTATATTCTCCCCCTTCTCCGGGACCAA +
Preference number: 2 (lower is better)
Translates to: SSMAAEAASKPGQMP*SWLGSYILPLLRDQ
Trigger: TTGGTCCCGGAGAAGGGGGAGAATATAACTCCCCAGCCAAGACAAAGGCATCTGGCCTGGCTTGGAAGCTGCCTCCGCCGCCATGCTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR-3UTR GCA 90 bp CTGGGAGGGCATTCGACTGGGAGTGGACAACCCCTCTCGGTCAATGCTGCGGAATCCTGGGGTAACAGCTaGCACAGGGCATTTGGCTGG +
Preference number: 2 (lower is better)
Translates to: LGGHSTGSGQPLSVNAAESWGNS*HRAFGW
Trigger: CCAGCCAAATGCCCTGTGGCAGCTGTTACCCCAGGA...TTCCGCAGCATTGACCGAGAGGGGTTGTCCACTCCCAGTCGAATGCCCTCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR-3UTR GCA 90 bp TCAGACCTGGGAGGGCATTCGACTGGGAGTGGACAACCCCTCTCGGTCAATGCTGACACATTCTGCTGCTaGCCCCTCCCTTGCCCTCTC +
Preference number: 2 (lower is better)
Translates to: SDLGGHSTGSGQPLSVNADTFCC*PLPCPL
Trigger: GAGAGGGCAAGGGAGGGGGCAGCAGCAGAATGTGTC...AGCATTGACCGAGAGGGGTTGTCCACTCCCAGTCGAATGCCCTCCCAGGTCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR-3UTR GCA 90 bp CTGGGAGGGCATTCGACTGGGAGTGGACAACCCCTCTCGGTCAATGCTGCGGAACCCCTTGCTCCCTGCTaGAGAAGCTCTGGGAGAAAC +
Preference number: 2 (lower is better)
Translates to: LGGHSTGSGQPLSVNAAEPLAPC*RSSGRN
Trigger: GTTTCTCCCAGAGCTTCTGCAGCAGGGAGCAAGGGG...TTCCGCAGCATTGACCGAGAGGGGTTGTCCACTCCCAGTCGAATGCCCTCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR-3UTR GCA 90 bp CTGGGAGGGCATTCGACTGGGAGTGGACAACCCCTCTCGGTCAATGCTGCGGAAGAACCCCTTGCTCCCTaGTGCAGAAGCTCTGGGAGA +
Preference number: 2 (lower is better)
Translates to: LGGHSTGSGQPLSVNAAEEPLAP*CRSSGR
Trigger: TCTCCCAGAGCTTCTGCAGCAGGGAGCAAGGGGTTC...TTCCGCAGCATTGACCGAGAGGGGTTGTCCACTCCCAGTCGAATGCCCTCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR-3UTR CCA 90 bp TGCTGGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACAGGTTCCCTTCACCCTaGCCAGAGGCTTTTCCTTGT +
Preference number: 2 (lower is better)
Translates to: CWNTPASQQPAFQWLARHRFPSP*PEAFPC
Trigger: ACAAGGAAAAGCCTCTGGCCAGGGTGAAGGGAACCT...GTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR-3UTR CCA 90 bp TCAGACCTGGGAGGGCATTCGACTGGGAGTGGACAACCCCTCTCGGTCAATGCTTTGCGGAGAGACTCCTaGTCTCTGCTGGAACACCCC +
Preference number: 2 (lower is better)
Translates to: SDLGGHSTGSGQPLSVNALRRDS*SLLEHP
Trigger: GGGGTGTTCCAGCAGAGACCAGGAGTCTCTCCGCAA...AGCATTGACCGAGAGGGGTTGTCCACTCCCAGTCGAATGCCCTCCCAGGTCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CAA 90 bp CATGGCGGCGGAGGCAGCTTCCAAGCCAGGCCAGATGCCTTTGTCTaGGCTGGGGAGTTATATTCTCCCCCTTCTCCGGGACCAAGTATT +
Preference number: 2 (lower is better)
Translates to: HGGGGSFQARPDAFV*AGELYSPPSPGPSI
Trigger: AATACTTGGTCCCGGAGAAGGGGGAGAATATAACTCCCCAGCCAAGACAAAGGCATCTGGCCTGGCTTGGAAGCTGCCTCCGCCGCCATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR-3UTR GCA 90 bp CTGGGAGGGCATTCGACTGGGAGTGGACAACCCCTCTCGGTCAATGCTGCGGAAGGACAGGAGTCTTCATaGCAGTCTTGCAGCTGTGAC +
Preference number: 2 (lower is better)
Translates to: LGGHSTGSGQPLSVNAAEGQESS*QSCSCD
Trigger: GTCACAGCTGCAAGACTGGCATGAAGACTCCTGTCC...TTCCGCAGCATTGACCGAGAGGGGTTGTCCACTCCCAGTCGAATGCCCTCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR-3UTR GCA 90 bp CCACCCTCATGGCAGCCTCAGAGAAGTCTTTTGAAGGAGTCTGTGGGAGGGCCTACCGACCCTGCCGCCTaGACCCACTATGAGGATTCA +
Preference number: 2 (lower is better)
Translates to: PPSWQPQRSLLKESVGGPTDPAA*THYEDS
Trigger: TGAATCCTCATAGTGGGTGCAGGCGGCAGGGTCGGT...AGGCCCTCCCACAGACTCCTTCAAAAGACTTCTCTGAGGCTGCCATGAGGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR-3UTR CCA 90 bp CTGGGAGGGCATTCGACTGGGAGTGGACAACCCCTCTCGGTCAATGCTGCGGAAAGGTTCCCTTCACCCTaGCCAGAGGCTTTTCCTTGT +
Preference number: 2 (lower is better)
Translates to: LGGHSTGSGQPLSVNAAERFPSP*PEAFPC
Trigger: ACAAGGAAAAGCCTCTGGCCAGGGTGAAGGGAACCT...TTCCGCAGCATTGACCGAGAGGGGTTGTCCACTCCCAGTCGAATGCCCTCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CAA 90 bp CACAGGGCATTTGGCTGGTTTCCTCTAATTGCATCCAGATTAAGGTaGCTGCTCTGCGCGGGGCCTCTCTCGTCCTCAGAGCAGAGCAGG +
Preference number: 2 (lower is better)
Translates to: HRAFGWFPLIASRLR*LLCAGPLSSSEQSR
Trigger: CCTGCTCTGCTCTGAGGACGAGAGAGGCCCCGCGCAGAGCAGCAACCTTAATCTGGATGCAATTAGAGGAAACCAGCCAAATGCCCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR-3UTR TCA 90 bp TCAGACCTGGGAGGGCATTCGACTGGGAGTGGACAACCCCTCTCGGTCAATGCTCAGGCTTCTGTCACATaGCTACCAAGAGAAGACCCC +
Preference number: 2 (lower is better)
Translates to: SDLGGHSTGSGQPLSVNAQASVT*LPREDP
Trigger: GGGGTCTTCTCTTGGTAGTCATGTGACAGAAGCCTG...AGCATTGACCGAGAGGGGTTGTCCACTCCCAGTCGAATGCCCTCCCAGGTCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR-3UTR GCA 90 bp AACACTAACACCCAGAGGCCACTTGTCTCTTCAGAGACTCCAGGGATCTGCCAGGAGGACACATTCTGCTaGTGCCCCCTCCCTTGCCCT +
Preference number: 2 (lower is better)
Translates to: NTNTQRPLVSSETPGICQEDTFC*CPLPCP
Trigger: AGGGCAAGGGAGGGGGCAGCAGCAGAATGTGTCCTC...CTGGCAGATCCCTGGAGTCTCTGAAGAGACAAGTGGCCTCTGGGTGTTAGTGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CAA 90 bp TCCCCTTCTGAATGTAGCATGTGCCCCTCCCTAACCCGGGTCGGTTaGATCAGCAACCACATAGCTCTGCAACAGATCGCCCAGCTCAAG +
Preference number: 2 (lower is better)
Translates to: SPSECSMCPSLTRVG*ISNHIALQQIAQLK
Trigger: CTTGAGCTGGGCGATCTGTTGCAGAGCTATGTGGTTGCTGATCAAACCGACCCGGGTTAGGGAGGGGCACATGCTACATTCAGAAGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR-3UTR TCA 90 bp CCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACCCTGGGCTAGCCTTTCAGGACCGATTTTGTCATCATaGCAAGGTTCCCTTCACCCT +
Preference number: 2 (lower is better)
Translates to: PAACIPVASQTPWASLSGPILSS*QGSLHP
Trigger: AGGGTGAAGGGAACCTTGTCATGATGACAAAATCGG...TCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR-3UTR TCA 90 bp CTGGGAGGGCATTCGACTGGGAGTGGACAACCCCTCTCGGTCAATGCTGCGGAAAGAAAGCAATTCAGATaGAAGGCCACTCCCAGGACT +
Preference number: 2 (lower is better)
Translates to: LGGHSTGSGQPLSVNAAERKQFR*KATPRT
Trigger: AGTCCTGGGAGTGGCCTTTCATCTGAATTGCTTTCT...TTCCGCAGCATTGACCGAGAGGGGTTGTCCACTCCCAGTCGAATGCCCTCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR-3UTR TCA 90 bp AACACTAACACCCAGAGGCCACTTGTCTCTTCAGAGACTCCAGGGATCTGCCAGTCTACCGTCATGGGGTaGCCTAAGACCCAGAGGCCA +
Preference number: 2 (lower is better)
Translates to: NTNTQRPLVSSETPGICQSTVMG*PKTQRP
Trigger: TGGCCTCTGGGTCTTAGGTCACCCCATGACGGTAGA...CTGGCAGATCCCTGGAGTCTCTGAAGAGACAAGTGGCCTCTGGGTGTTAGTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR-3UTR GCA 90 bp ACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTGCTCCTCGCCCTTTCTAGACCCTaGCTTGCCCACAGCTTGCGG +
Preference number: 2 (lower is better)
Translates to: TMKLRKCAWFTQTTILLLALSRP*LAHSLR
Trigger: CCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGC...GAGGAGCAGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR-3UTR GCA 90 bp TTCCTGTGCCCAGTGAAGACATCCTCTAACCCAGAGAGAGGAGGACACATTCTGCCAAGCCAGGCCAGATaGCTTTGTCTTGGCTGGGGA +
Preference number: 2 (lower is better)
Translates to: FLCPVKTSSNPERGGHILPSQAR*LCLGWG
Trigger: TCCCCAGCCAAGACAAAGGCATCTGGCCTGGCTTGG...CAGAATGTGTCCTCCTCTCTCTGGGTTAGAGGATGTCTTCACTGGGCACAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR-3UTR CCA 90 bp AAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTGCTCCTCTCTGTCCAGCCTGCATTCCAGTaGCTAGCCAGACACCCTGGG +
Preference number: 2 (lower is better)
Translates to: KLRKCAWFTQTTILLLSVQPAFQ*LARHPG
Trigger: CCCAGGGTGTCTGGCTAGCCACTGGAATGCAGGCTG...GACAGAGAGGAGCAGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR-3UTR CCA 90 bp CTGGGAGGGCATTCGACTGGGAGTGGACAACCCCTCTCGGTCAATGCTGCGGAACAGATGCCTTTGTCTTaGCTGGGGAGTTATATTCTC +
Preference number: 2 (lower is better)
Translates to: LGGHSTGSGQPLSVNAAEQMPLS*LGSYIL
Trigger: GAGAATATAACTCCCCAGCCAAGACAAAGGCATCTG...TTCCGCAGCATTGACCGAGAGGGGTTGTCCACTCCCAGTCGAATGCCCTCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CAA 90 bp TCAGCCCTCCGTGGAGGAATCCAGGCTCCTTGCTTGCACCAGCTTTaGGGACACTGGCTAGGAAAGCTCTGGAACACACTTTTATCCAAC +
Preference number: 2 (lower is better)
Translates to: SALRGGIQAPCLHQL*GHWLGKLWNTLLSN
Trigger: GTTGGATAAAAGTGTGTTCCAGAGCTTTCCTAGCCAGTGTCCCAAAAGCTGGTGCAAGCAAGGAGCCTGGATTCCTCCACGGAGGGCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CAA 90 bp CATCACAGCTTCTGTAGAAACACAACACTAACACCCAGAGGCCACTaGTCTCTTCAGAGACTCCAGGGATCTGCCAGGTCCAGCCTCAGG +
Preference number: 2 (lower is better)
Translates to: HHSFCRNTTLTPRGH*SLQRLQGSARSSLR
Trigger: CCTGAGGCTGGACCTGGCAGATCCCTGGAGTCTCTGAAGAGACAAGTGGCCTCTGGGTGTTAGTGTTGTGTTTCTACAGAAGCTGTGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR-3UTR GCA 90 bp TTGGACAGGAGTCTTCATGCCAGTCTTGCAGCTGTGACCATGAAGCTTCGCAAGCTCAGACAACAATCCTaGTCCTCTCTGTCCCCTGGC +
Preference number: 2 (lower is better)
Translates to: LDRSLHASLAAVTMKLRKLRQQS*SSLSPG
Trigger: GCCAGGGGACAGAGAGGAGCAGGATTGTTGTCTGAG...CTTGCGAAGCTTCATGGTCACAGCTGCAAGACTGGCATGAAGACTCCTGTCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR-3UTR CCA 90 bp ACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTGCTCCTCTTGCGGAGAGACTCCTaGTCTCTGCTGGAACACCCC +
Preference number: 2 (lower is better)
Translates to: TMKLRKCAWFTQTTILLLLRRDS*SLLEHP
Trigger: GGGGTGTTCCAGCAGAGACCAGGAGTCTCTCCGCAA...GAGGAGCAGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR-3UTR CCA 90 bp TTCCTGTGCCCAGTGAAGACATCCTCTAACCCAGAGAGAGGAGGACACATTCTGAGGGGAGGATCCCAGTaGAGGGTGCATCTGACACTT +
Preference number: 2 (lower is better)
Translates to: FLCPVKTSSNPERGGHILRGGSQ*RVHLTL
Trigger: AAGTGTCAGATGCACCCTCCACTGGGATCCTCCCCT...CAGAATGTGTCCTCCTCTCTCTGGGTTAGAGGATGTCTTCACTGGGCACAGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR-3UTR CCA 90 bp TTCCTGTGCCCAGTGAAGACATCCTCTAACCCAGAGAGAGGAGGACACATTCTGCTCAGCTTTGGAGGATaGAGTGTGGGCGTTTTCCTT +
Preference number: 2 (lower is better)
Translates to: FLCPVKTSSNPERGGHILLSFGG*SVGVFL
Trigger: AAGGAAAACGCCCACACTCCATCCTCCAAAGCTGAG...CAGAATGTGTCCTCCTCTCTCTGGGTTAGAGGATGTCTTCACTGGGCACAGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 72 bp GTCTCCGTTCTAGGCAGGGTGGCCTCCAGGGATCTCTaGCAGGTTCCTTCCCTCTGTCTGGCCAGCCCCGGG +
Preference number: 3 (lower is better)
Translates to: VSVLGRVASRDL*QVPSLCLASPG
Trigger: CCCGGGGCTGGCCAGACAGAGGGAAGGAACCTGGCAGAGATCCCTGGAGGCCACCCTGCCTAGAACGGAGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 72 bp AGACCCTGCCTTGCCCACAGCTTGCGGAGAGACTCCTaGTCTCTGCTGGAACACCCCAGCCAGCCAGCAGCC +
Preference number: 3 (lower is better)
Translates to: RPCLAHSLRRDS*SLLEHPSQPAA
Trigger: GGCTGCTGGCTGGCTGGGGTGTTCCAGCAGAGACCAGGAGTCTCTCCGCAAGCTGTGGGCAAGGCAGGGTCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR TCA 72 bp AGGCATCTCCACCGACCCTGCCGCCTGCACCCACTATaGGGATTCAGCCCTCCGTGGAGGAATCCAGGCTCC +
Preference number: 3 (lower is better)
Translates to: RHLHRPCRLHPL*GFSPPWRNPGS
Trigger: GGAGCCTGGATTCCTCCACGGAGGGCTGAATCCTCATAGTGGGTGCAGGCGGCAGGGTCGGTGGAGATGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 72 bp TGGTCTCTGCTGGAACACCCCAGCCAGCCAGCAGCCTaGATTCCAGTGGCTAGCCAGACACCCTGGGCTAGC +
Preference number: 3 (lower is better)
Translates to: WSLLEHPSQPAA*IPVASQTPWAS
Trigger: GCTAGCCCAGGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAGCAGAGACCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR GCA 72 bp GCCTTGCCCACAGCTTGCGGAGAGACTCCTGGTCTCTaGTGGAACACCCCAGCCAGCCAGCAGCCTGCATTC +
Preference number: 3 (lower is better)
Translates to: ALPTACGETPGL*WNTPASQQPAF
Trigger: GAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAGCAGAGACCAGGAGTCTCTCCGCAAGCTGTGGGCAAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR CCA 72 bp TGGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTaGCTAGCCAGACACCCTGGGCTAGCCTTTCAGGAG +
Preference number: 3 (lower is better)
Translates to: WNTPASQQPAFQ*LARHPGLAFQE
Trigger: CTCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR CCA 72 bp TTGCCCACAGCTTGCGGAGAGACTCCTGGTCTCTGCTaGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAG +
Preference number: 3 (lower is better)
Translates to: LPTACGETPGLC*NTPASQQPAFQ
Trigger: CTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAGCAGAGACCAGGAGTCTCTCCGCAAGCTGTGGGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR CCA 72 bp GGAAGAGAGCATCCCAGAAGTTCCCTAGGTCCAGCATaGCGGCGGAGGCAGCTTCCAAGCCAGGCCAGATGC +
Preference number: 3 (lower is better)
Translates to: GREHPRSSLGPA*RRRQLPSQARC
Trigger: GCATCTGGCCTGGCTTGGAAGCTGCCTCCGCCGCCATGCTGGACCTAGGGAACTTCTGGGATGCTCTCTTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 72 bp CCATCGAAGGCACCAGCTCCAGAGCCTCTCTTGGGCTaGTGTCCTGCACTCAAAGCCAGGCCCCCAGTCATC +
Preference number: 3 (lower is better)
Translates to: PSKAPAPEPLLG*CPALKARPPVI
Trigger: GATGACTGGGGGCCTGGCTTTGAGTGCAGGACACCAGCCCAAGAGAGGCTCTGGAGCTGGTGCCTTCGATGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR TCA 72 bp GTTCCTTCCCTCTGTCTGGCCAGCCCCGGGTATGCCTaGCACTCCTGGCCTGACTGCAGTAGAAGGGAACTG +
Preference number: 3 (lower is better)
Translates to: VPSLCLASPGYA*HSWPDCSRREL
Trigger: CAGTTCCCTTCTACTGCAGTCAGGCCAGGAGTGTCAGGCATACCCGGGGCTGGCCAGACAGAGGGAAGGAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 72 bp ACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTaGGGAGAGACTCCTGGTCTCTGCTGGAACACCCCA +
Preference number: 3 (lower is better)
Translates to: TRPFLDPALPTA*GETPGLCWNTP
Trigger: TGGGGTGTTCCAGCAGAGACCAGGAGTCTCTCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR GCA 72 bp GCATGGCGGCGGAGGCAGCTTCCAAGCCAGGCCAGATaGCTTTGTCTTGGCTGGGGAGTTATATTCTCCCCC +
Preference number: 3 (lower is better)
Translates to: AWRRRQLPSQAR*LCLGWGVIFSP
Trigger: GGGGGAGAATATAACTCCCCAGCCAAGACAAAGGCATCTGGCCTGGCTTGGAAGCTGCCTCCGCCGCCATGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 72 bp AGGGCCGTCCATGGAAGAGCTCTGCAAACACCTATGTaGATAGCTAGGCGCAGACCGAGACCGCTGAGGCGG +
Preference number: 3 (lower is better)
Translates to: RAVHGRALQTPM*IARRRPRPLRR
Trigger: CCGCCTCAGCGGTCTCGGTCTGCGCCTAGCTATGCACATAGGTGTTTGCAGAGCTCTTCCATGGACGGCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 72 bp TATGTCGTCTCTGGTGGCCCAGCTGGGTGGCAGTCCTaGCTCCCCTATAACCCAGGCCATAGCATAGCCCTG +
Preference number: 3 (lower is better)
Translates to: YVVSGGPAGWQS*LPYNPGHSIAL
Trigger: CAGGGCTATGCTATGGCCTGGGTTATAGGGGAGCCAGGACTGCCACCCAGCTGGGCCACCAGAGACGACATA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR-3UTR CAA 90 bp CTGGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACCCGCCAGAGGCTTTTCCTaGTGTCCTCGCCATATCCAT +
Preference number: 3 (lower is better)
Translates to: LEHPSQPAACIPVASQTPARGFS*CPRHIH
Trigger: ATGGATATGGCGAGGACACAAGGAAAAGCCTCTGGC...GGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR GCA 72 bp CCAGGCCCCCAGTCATCCCCTTCTGAATGTAGCATGTaGCCCTCCCTAACCCGGGTCGGTTTGATCAGCAAC +
Preference number: 3 (lower is better)
Translates to: PGPQSSPSECSM*PSLTRVGLISN
Trigger: GTTGCTGATCAAACCGACCCGGGTTAGGGAGGGGCACATGCTACATTCAGAAGGGGATGACTGGGGGCCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 72 bp GCTGACTTCAGACCTGGGAGGGCATTCGACTGGGAGTaGACAACCCCTCTCGGTCAATGCTGCGGAAGGCTA +
Preference number: 3 (lower is better)
Translates to: ADFRPGRAFDWE*TTPLGQCCGRL
Trigger: TAGCCTTCCGCAGCATTGACCGAGAGGGGTTGTCCACTCCCAGTCGAATGCCCTCCCAGGTCTGAAGTCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR-3UTR CAA 90 bp ACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAGAGACTCCTGGTGCCAGAGGCTTTTCCTaGTGTCCTCGCCATATCCAT +
Preference number: 3 (lower is better)
Translates to: TRPFLDPALPTACGETPGARGFS*CPRHIH
Trigger: ATGGATATGGCGAGGACACAAGGAAAAGCCTCTGGC...ACCAGGAGTCTCTCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR TCA 72 bp GGACTAGAGGGGACATACCTGGCACAAGGCTGTCACTaGACAGGTTGGGTCAGGTCTTGGGGAGCACTGGAG +
Preference number: 3 (lower is better)
Translates to: GLEGTYLAQGCH*TGWVRSWGALE
Trigger: CTCCAGTGCTCCCCAAGACCTGACCCAACCTGTTCAGTGACAGCCTTGTGCCAGGTATGTCCCCTCTAGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 72 bp GAGGCAGCTTCCAAGCCAGGCCAGATGCCTTTGTCTTaGCTGGGGAGTTATATTCTCCCCCTTCTCCGGGAC +
Preference number: 3 (lower is better)
Translates to: EAASKPGQMPLS*LGSYILPLLRD
Trigger: GTCCCGGAGAAGGGGGAGAATATAACTCCCCAGCCAAGACAAAGGCATCTGGCCTGGCTTGGAAGCTGCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 72 bp TGGTTTGCTGACTTCAGACCTGGGAGGGCATTCGACTaGGAGTGGACAACCCCTCTCGGTCAATGCTGCGGA +
Preference number: 3 (lower is better)
Translates to: WFADFRPGRAFD*EWTTPLGQCCG
Trigger: TCCGCAGCATTGACCGAGAGGGGTTGTCCACTCCCAGTCGAATGCCCTCCCAGGTCTGAAGTCAGCAAACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR TCA 72 bp GGACTCACATTCTCAGGAGGGCCTTCAGATAGGGGATaGGCTCACGGAGCAAGGGAAGCTGAGAAAGGAGGC +
Preference number: 3 (lower is better)
Translates to: GLTFSGGPSDRG*AHGAREAEKGG
Trigger: GCCTCCTTTCTCAGCTTCCCTTGCTCCGTGAGCTCATCCCCTATCTGAAGGCCCTCCTGAGAATGTGAGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR TCA 72 bp TGCCCTCTCCCTTCTCCTTGGAGGGTGAGTCAGAAGTaGGGGCGCCCTTTCCAAGGTAGGCATCATGTCTCA +
Preference number: 3 (lower is better)
Translates to: CPLPSPWRVSQK*GRPFQGRHHVS
Trigger: TGAGACATGATGCCTACCTTGGAAAGGGCGCCCTCACTTCTGACTCACCCTCCAAGGAGAAGGGAGAGGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 72 bp GAGGATTCAGCCCTCCGTGGAGGAATCCAGGCTCCTTaGTTGCACCAGCTTTTGGGACACTGGCTAGGAAAG +
Preference number: 3 (lower is better)
Translates to: EDSALRGGIQAP*LHQLLGHWLGK
Trigger: CTTTCCTAGCCAGTGTCCCAAAAGCTGGTGCAAGCAAGGAGCCTGGATTCCTCCACGGAGGGCTGAATCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 72 bp ACAAGACCAGAACCACCCAACCTGGACTGCAGTCTGTaGCAGCCAGGTGCACAGAGTTCTAGGTCACTGAGG +
Preference number: 3 (lower is better)
Translates to: TRPEPPNLDCSL*QPGAQSSRSLR
Trigger: CCTCAGTGACCTAGAACTCTGTGCACCTGGCTGGCACAGACTGCAGTCCAGGTTGGGTGGTTCTGGTCTTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 72 bp CAGCTGCCACAGGGCATTTGGCTGGTTTCCTCTAATTaGATCCAGATTAAGGTTGCTGCTCTGCGCGGGGCC +
Preference number: 3 (lower is better)
Translates to: QLPQGIWLVSSN*IQIKVAALRGA
Trigger: GGCCCCGCGCAGAGCAGCAACCTTAATCTGGATGCAATTAGAGGAAACCAGCCAAATGCCCTGTGGCAGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 72 bp GCAAGCATTCCTCTTCCCACTTATTTACTGCCATCCTaGCCTGGCCATCGAAGGCACCAGCTCCAGAGCCTC +
Preference number: 3 (lower is better)
Translates to: ASIPLPTYLLPS*PGHRRHQLQSL
Trigger: GAGGCTCTGGAGCTGGTGCCTTCGATGGCCAGGGCAGGATGGCAGTAAATAAGTGGGAAGAGGAATGCTTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 72 bp CAGAGGCCACTTGTCTCTTCAGAGACTCCAGGGATCTaGCAGGTCCAGCCTCAGGCTAGCCAGTTTCCCTAT +
Preference number: 3 (lower is better)
Translates to: QRPLVSSETPGI*QVQPQASQFPY
Trigger: ATAGGGAAACTGGCTAGCCTGAGGCTGGACCTGGCAGATCCCTGGAGTCTCTGAAGAGACAAGTGGCCTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 72 bp TTAAAGGCCTGGTGGCAGCAGGCATCTGCACGCAGCTaGTCAGAAAGTGCAGAGTCCTCAGAAAGGGTCTCC +
Preference number: 3 (lower is better)
Translates to: LKAWWQQASARS*SESAESSERVS
Trigger: GGAGACCCTTTCTGAGGACTCTGCACTTTCTGAGCAGCTGCGTGCAGATGCCTGCTGCCACCAGGCCTTTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 72 bp CAGCTTCCAAGCCAGGCCAGATGCCTTTGTCTTGGCTaGGGAGTTATATTCTCCCCCTTCTCCGGGACCAAG +
Preference number: 3 (lower is better)
Translates to: QLPSQARCLCLG*GVIFSPFSGTK
Trigger: CTTGGTCCCGGAGAAGGGGGAGAATATAACTCCCCAGCCAAGACAAAGGCATCTGGCCTGGCTTGGAAGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR TCA 72 bp GTCTGTGCCAGCCAGGTGCACAGAGTTCTAGGTCACTaGGGCTCTGCCCTGCATTTCTGTTACTGGGGTGAT +
Preference number: 3 (lower is better)
Translates to: VCASQVHRVLGH*GSALHFCYWGD
Trigger: ATCACCCCAGTAACAGAAATGCAGGGCAGAGCCTCAGTGACCTAGAACTCTGTGCACCTGGCTGGCACAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR TCA 72 bp CAGCAAGGTAGAAGTGCAGGAGAGGCATTGGTTTGCTaGCTTCAGACCTGGGAGGGCATTCGACTGGGAGTG +
Preference number: 3 (lower is better)
Translates to: QQGRSAGEALVC*LQTWEGIRLGV
Trigger: CACTCCCAGTCGAATGCCCTCCCAGGTCTGAAGTCAGCAAACCAATGCCTCTCCTGCACTTCTACCTTGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 72 bp TTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTaGTCCTCTCTGTCCCCTGGCATGGGTGTGAGCACG +
Preference number: 3 (lower is better)
Translates to: FASVLGSLRQQS*SSLSPGMGVST
Trigger: CGTGCTCACACCCATGCCAGGGGACAGAGAGGAGCAGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR GCA 72 bp CACCACACCCATCAACCTATTCAGGCCCCAGTGGGTTaGTGTTTCTGCACACACCTTAGATCCTCAGGGGAG +
Preference number: 3 (lower is better)
Translates to: HHTHQPIQAPVG*CFCTHLRSSGE
Trigger: CTCCCCTGAGGATCTAAGGTGTGTGCAGAAACAGCAACCCACTGGGGCCTGAATAGGTTGATGGGTGTGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 72 bp GCAAACTACACAAGACCAGAACCACCCAACCTGGACTaGAGTCTGTGCCAGCCAGGTGCACAGAGTTCTAGG +
Preference number: 3 (lower is better)
Translates to: ANYTRPEPPNLD*SLCQPGAQSSR
Trigger: CCTAGAACTCTGTGCACCTGGCTGGCACAGACTGCAGTCCAGGTTGGGTGGTTCTGGTCTTGTGTAGTTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 72 bp CAAGGAAGTGGGCTGGGGGAACCCCTTGCTCCCTGCTaGAGAAGCTCTGGGAGAAACTGGCTTCTTAGATTT +
Preference number: 3 (lower is better)
Translates to: QGSGLGEPLAPC*RSSGRNWLLRF
Trigger: AAATCTAAGAAGCCAGTTTCTCCCAGAGCTTCTGCAGCAGGGAGCAAGGGGTTCCCCCAGCCCACTTCCTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 72 bp ACCCTTCTCATTCTGAGGCTCCGCCCCCTCTTATTCTaGTCAGCACCTTTAAACGTGGCACTGTCCTGCAGC +
Preference number: 3 (lower is better)
Translates to: TLLILRLRPLLF*SAPLNVALSCS
Trigger: GCTGCAGGACAGTGCCACGTTTAAAGGTGCTGACCAGAATAAGAGGGGGCGGAGCCTCAGAATGAGAAGGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 72 bp AGGACACTCAGCAAGGTAGAAGTGCAGGAGAGGCATTaGTTTGCTGACTTCAGACCTGGGAGGGCATTCGAC +
Preference number: 3 (lower is better)
Translates to: RTLSKVEVQERH*FADFRPGRAFD
Trigger: GTCGAATGCCCTCCCAGGTCTGAAGTCAGCAAACCAATGCCTCTCCTGCACTTCTACCTTGCTGAGTGTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 72 bp TTCCCAGGGCTGGATGCTGGCTTCAGCCGTTCAACTTaGTTTGACATGGTTAGCAAGTGGGGGTATCCACTT +
Preference number: 3 (lower is better)
Translates to: FPGLDAGFSRST*FDMVSKWGYPL
Trigger: AAGTGGATACCCCCACTTGCTAACCATGTCAAAGCAAGTTGAACGGCTGAAGCCAGCATCCAGCCCTGGGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 72 bp CCCGATTTTGTCATCATGACAAGGTTCCCTTCACCCTaGCCAGAGGCTTTTCCTTGTGTCCTCGCCATATCC +
Preference number: 3 (lower is better)
Translates to: PDFVIMTRFPSP*PEAFPCVLAIS
Trigger: GGATATGGCGAGGACACAAGGAAAAGCCTCTGGCCAGGGTGAAGGGAACCTTGTCATGATGACAAAATCGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR-3UTR CAA 90 bp ACACTGGCTAGGAAAGCTCTGGAACACACTTTTATCCAACCACAATCCTCAGCTTCAGGCCCCAGTGGGTaGCTGTTTCTGCACACACCT +
Preference number: 3 (lower is better)
Translates to: TLARKALEHTFIQPQSSASGPSG*LFLHTP
Trigger: AGGTGTGTGCAGAAACAGCAACCCACTGGGGCCTGA...AGCTGAGGATTGTGGTTGGATAAAAGTGTGTTCCAGAGCTTTCCTAGCCAGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR TCA 72 bp ATGGGACCCCCTCTGAATTACCAGGCTTCTGTCACATaGCTACCAAGAGAAGACCCCAAGACAAGGGTTCAC +
Preference number: 3 (lower is better)
Translates to: MGPPLNYQASVT*LPREDPKTRVH
Trigger: GTGAACCCTTGTCTTGGGGTCTTCTCTTGGTAGTCATGTGACAGAAGCCTGGTAATTCAGAGGGGGTCCCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 72 bp GCTTTGTGGCTCATTTTTCTTCAGGGTAGGCGTGGGTaGCACAGAGTGAACGTTACAGAGAGATTTGCCCTC +
Preference number: 3 (lower is better)
Translates to: ALWLIFLQGRRG*HRVNVTERFAL
Trigger: GAGGGCAAATCTCTCTGTAACGTTCACTCTGTGCCACCCACGCCTACCCTGAAGAAAAATGAGCCACAAAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 72 bp TCCCACCTGGAATTGAACACAATGTATTTAAAGGCCTaGTGGCAGCAGGCATCTGCACGCAGCTGCTCAGAA +
Preference number: 3 (lower is better)
Translates to: SHLELNTMYLKA*WQQASARSCSE
Trigger: TTCTGAGCAGCTGCGTGCAGATGCCTGCTGCCACCAGGCCTTTAAATACATTGTGTTCAATTCCAGGTGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR TCA 72 bp AACTTTCTAGGCAGGCAATGTCTTTCCTGTGCCCAGTaGAGACATCCTCTAACCCAGAGAGAGGAGGACACA +
Preference number: 3 (lower is better)
Translates to: NFLGRQCLSCAQ*RHPLTQREEDT
Trigger: TGTGTCCTCCTCTCTCTGGGTTAGAGGATGTCTTCACTGGGCACAGGAAAGACATTGCCTGCCTAGAAAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 72 bp ATCCAGGCTCCTTGCTTGCACCAGCTTTTGGGACACTaGCTAGGAAAGCTCTGGAACACACTTTTATCCAAC +
Preference number: 3 (lower is better)
Translates to: IQAPCLHQLLGH*LGKLWNTLLSN
Trigger: GTTGGATAAAAGTGTGTTCCAGAGCTTTCCTAGCCAGTGTCCCAAAAGCTGGTGCAAGCAAGGAGCCTGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 72 bp CACCTGGAATTGAACACAATGTATTTAAAGGCCTGGTaGCAGCAGGCATCTGCACGCAGCTGCTCAGAAAGT +
Preference number: 3 (lower is better)
Translates to: HLELNTMYLKAW*QQASARSCSES
Trigger: ACTTTCTGAGCAGCTGCGTGCAGATGCCTGCTGCCACCAGGCCTTTAAATACATTGTGTTCAATTCCAGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR TCA 72 bp GGAAGAGTCAGAAGCCAGTATAGAAAGCAATTCAGATaGAAGGCCACTCCCAGGACTGCACTGTTGCTCACA +
Preference number: 3 (lower is better)
Translates to: GRVRSQYRKQFR*KATPRTALLLT
Trigger: TGTGAGCAACAGTGCAGTCCTGGGAGTGGCCTTTCATCTGAATTGCTTTCTATACTGGCTTCTGACTCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR TCA 72 bp AGGGAGGTCACAGGTGGATTCCAGGAACCCTGGGGTTaGTCGCCATCTAAATTAATGTTGTCAAAGACGACT +
Preference number: 3 (lower is better)
Translates to: REVTGGFQEPWG*SPSKLMLSKTT
Trigger: AGTCGTCTTTGACAACATTAATTTAGATGGCGATCAACCCCAGGGTTCCTGGAATCCACCTGTGACCTCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR GCA 72 bp TTATTCTGGTCAGCACCTTTAAACGTGGCACTGTCCTaGAGCACCACTCTTAGTGAGAAAAGCCAAAAGGCA +
Preference number: 3 (lower is better)
Translates to: LFWSAPLNVALS*STTLSEKSQKA
Trigger: TGCCTTTTGGCTTTTCTCACTAAGAGTGGTGCTGCAGGACAGTGCCACGTTTAAAGGTGCTGACCAGAATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 72 bp ATCCAACCACAATCCTCAGCTTTGGAGGATGGAGTGTaGGCGTTTTCCTTATTAAAAGGAAGAGAGCATCCC +
Preference number: 3 (lower is better)
Translates to: IQPQSSALEDGV*AFSLLKGREHP
Trigger: GGGATGCTCTCTTCCTTTTAATAAGGAAAACGCCCACACTCCATCCTCCAAAGCTGAGGATTGTGGTTGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CCA 72 bp TTGCACCAGCTTTTGGGACACTGGCTAGGAAAGCTCTaGAACACACTTTTATCCAACCACAATCCTCAGCTT +
Preference number: 3 (lower is better)
Translates to: LHQLLGHWLGKL*NTLLSNHNPQL
Trigger: AAGCTGAGGATTGTGGTTGGATAAAAGTGTGTTCCAGAGCTTTCCTAGCCAGTGTCCCAAAAGCTGGTGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR TCA 72 bp TCCTTATCCTCAAAGTGTGGAAGGAAGACAGTCATGTaGCTTGATTTCTGCAAACCTGAAATGCTATCTTCC +
Preference number: 3 (lower is better)
Translates to: SLSSKCGRKTVM*LDFCKPEMLSS
Trigger: GGAAGATAGCATTTCAGGTTTGCAGAAATCAAGTCACATGACTGTCTTCCTTCCACACTTTGAGGATAAGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS-3UTR TCA 90 bp TGCTGGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACCCGCAAGGGCCGCACTaGTGGGGGAGAGGCAGAAGG +
Preference number: 4 (lower is better)
Translates to: CWNTPASQQPAFQWLARHPQGPH*WGRGRR
Trigger: CCTTCTGCCTCTCCCCCATCAGTGCGGCCCTTGCGG...GTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp CTGGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACCCGGCCCCATCCACCTCTaGGCCCTGGGCCAGCTTTTC +
Preference number: 4 (lower is better)
Translates to: LEHPSQPAACIPVASQTPGPIHL*ALGQLF
Trigger: GAAAAGCTGGCCCAGGGCCCAGAGGTGGATGGGGCC...GGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR CAA 72 bp CCCTGGCCATCGAAGGCACCAGCTCCAGAGCCTCTCTaGGGCTGGTGTCCTGCACTCAAAGCCAGGCCCCCA +
Preference number: 4 (lower is better)
Translates to: PWPSKAPAPEPL*GWCPALKARPP
Trigger: TGGGGGCCTGGCTTTGAGTGCAGGACACCAGCCCAAGAGAGGCTCTGGAGCTGGTGCCTTCGATGGCCAGGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS-3UTR GCA 90 bp GGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAGAGGAGGACGGGGTGCCTTaGGCACAGGAGAGCTCTCGG +
Preference number: 4 (lower is better)
Translates to: GVSTRPFLDPALPTACGEEDGVP*AQESSR
Trigger: CCGAGAGCTCTCCTGTGCGCAAGGCACCCCGTCCTC...CTCTCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp GGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAGAGGGCCCCATCCACCTCTaGGCCCTGGGCCAGCTTTTC +
Preference number: 4 (lower is better)
Translates to: GVSTRPFLDPALPTACGEGPIHL*ALGQLF
Trigger: GAAAAGCTGGCCCAGGGCCCAGAGGTGGATGGGGCC...CTCTCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp ATGGGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAGGTTGGCATCGGAGCTaGAGGGGGAGCTGCCCTCGC +
Preference number: 4 (lower is better)
Translates to: MGVSTRPFLDPALPTACGGWHRS*RGSCPR
Trigger: GCGAGGGCAGCTCCCCCTCCAGCTCCGATGCCAACC...TCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACCCAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp TGGTCTCTGCTGGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTAGCCAGGGAACCGCAGGTTaGCATCGGAGCTGGAGGGGG +
Preference number: 4 (lower is better)
Translates to: WSLLEHPSQPAACIPVASQGTAG*HRSWRG
Trigger: CCCCCTCCAGCTCCGATGCCAACCTGCGGTTCCCTG...GCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAGCAGAGACCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp CTTGCCCAGGACCTCATGGCGGTCCCCTCGTCGATGGTCAAGGGCAGGGGCTTTATTGGCTCTCTCGGCTaGCCACCACCAGCTGGCCAC +
Preference number: 4 (lower is better)
Translates to: LAQDLMAVPSSMVKGRGFIGSLG*PPPAGH
Trigger: GTGGCCAGCTGGTGGTGGCCAGCCGAGAGAGCCAAT...AAAGCCCCTGCCCTTGACCATCGACGAGGGGACCGCCATGAGGTCCTGGGCAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR TCA 90 bp CTGGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACCCAAGTGCAGCAGCATCTaGTCCGTGGCCAGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: LEHPSQPAACIPVASQTPKCSSI*SVASCC
Trigger: GCAGCAGCTGGCCACGGATCAGATGCTGCTGCACTT...GGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR TCA 90 bp CTGCCAGGTTCCTTCCCTCTGTCTGGCCAGCCCCGGGTATGCCTGACACTCCTGGGCTCCTGGCCTTCCTaGGCACCAGCTCTCCATTCA +
Preference number: 4 (lower is better)
Translates to: LPGSFPLSGQPRVCLTLLGSWPS*APALHS
Trigger: TGAATGGAGAGCTGGTGCTCAGGAAGGCCAGGAGCC...CAGGAGTGTCAGGCATACCCGGGGCTGGCCAGACAGAGGGAAGGAACCTGGCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS-3UTR GCA 90 bp GTGGCTAGCCAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGGACAGAGATACCCTGGGTGGTaGTCCCCAGGGCCCTGCAGC +
Preference number: 4 (lower is better)
Translates to: VASQTPWASLSGAELQGQRYPGW*SPGPCS
Trigger: GCTGCAGGGCCCTGGGGAGCACCACCCAGGGTATCT...CTGTCCCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp ATGGGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAGAGGACGGGGTGCCTTaGGCACAGGAGAGCTCTCGG +
Preference number: 4 (lower is better)
Translates to: MGVSTRPFLDPALPTACGEDGVP*AQESSR
Trigger: CCGAGAGCTCTCCTGTGCGCAAGGCACCCCGTCCTC...TCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACCCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp GCTAGCCAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGGACAGCTGCAGGCACAGATACCCTaGGTGGTGCTCCCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: ASQTPWASLSGAELQGQLQAQIP*VVLPRA
Trigger: GGCCCTGGGGAGCACCACCCAGGGTATCTGTGCCTG...CAGCTGTCCCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp CTTGCCCAGGACCTCATGGCGGTCCCCTCGTCGATGGTCAAGGGCAGGGGCTTTGAGGCCTTGGCTCTGTaGGAGAGGGTTGGTAGAGGG +
Preference number: 4 (lower is better)
Translates to: LAQDLMAVPSSMVKGRGFEALAL*ERVGRG
Trigger: CCCTCTACCAACCCTCTCCCACAGAGCCAAGGCCTC...AAAGCCCCTGCCCTTGACCATCGACGAGGGGACCGCCATGAGGTCCTGGGCAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp ATGGGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGACAGGGAACCGCAGGTTaGCATCGGAGCTGGAGGGGG +
Preference number: 4 (lower is better)
Translates to: MGVSTRPFLDPALPTACGQGTAG*HRSWRG
Trigger: CCCCCTCCAGCTCCGATGCCAACCTGCGGTTCCCTG...TCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACCCAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp GTGGCTAGCCAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGGACAGCGCAGGGAGCGCATGTaGCCCAGGTCCACTCGGAAC +
Preference number: 4 (lower is better)
Translates to: VASQTPWASLSGAELQGQRRERM*PRSTRN
Trigger: GTTCCGAGTGGACCTGGGCCACATGCGCTCCCTGCG...CTGTCCCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp GGCATGGGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCATTGGCTCTCTCGGCTaGCCACCACCAGCTGGCCAC +
Preference number: 4 (lower is better)
Translates to: GMGVSTRPFLDPALPTACIGSLG*PPPAGH
Trigger: GTGGCCAGCTGGTGGTGGCCAGCCGAGAGAGCCAAT...GCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACCCATGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp AACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACCCTGGGTGGCAGAAGAGCATCTaGAGGCCGTCCTCACCCAGG +
Preference number: 4 (lower is better)
Translates to: NTPASQQPAFQWLARHPGWQKSI*RPSSPR
Trigger: CCTGGGTGAGGACGGCCTCCAGATGCTCTTCTGCCA...CCCAGGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp TGGTCTCTGCTGGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTAGCTCCCAGCGAGGCGTCTaGAGGAGGCCATTGCTGTCA +
Preference number: 4 (lower is better)
Translates to: WSLLEHPSQPAACIPVASSQRGV*RRPLLS
Trigger: TGACAGCAATGGCCTCCTGCAGACGCCTCGCTGGGA...GCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAGCAGAGACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp CTGCCCTGGCCATCGAAGGCACCAGCTCCAGAGCCTCTCTTGGGCTGGTGTCCTAGGCTCTCCTCAGGGTaGATTTCAGAGGACGGCAGC +
Preference number: 4 (lower is better)
Translates to: LPWPSKAPAPEPLLGWCPRLSSG*ISEDGS
Trigger: GCTGCCGTCCTCTGAAATCCACCCTGAGGAGAGCCT...AGGACACCAGCCCAAGAGAGGCTCTGGAGCTGGTGCCTTCGATGGCCAGGGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS-3UTR CCA 90 bp GGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAGAGTCTGAGCCTGGGTGGTaGCCAGCACACTCCACAGCT +
Preference number: 4 (lower is better)
Translates to: GVSTRPFLDPALPTACGESEPGW*PAHSTA
Trigger: AGCTGTGGAGTGTGCTGGCCACCACCCAGGCTCAGA...CTCTCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp CTGGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACCCCTCCCGCGGTGCCTTTaGGCCTTTCTTGCCTTCTCT +
Preference number: 4 (lower is better)
Translates to: LEHPSQPAACIPVASQTPLPRCL*AFLAFS
Trigger: AGAGAAGGCAAGAAAGGCCCAAAGGCACCGCGGGAG...GGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR CAA 72 bp CACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTaGCGGAGAGACTCCTGGTCTCTGCTGGAACACCCC +
Preference number: 4 (lower is better)
Translates to: HEALSRPCLAHS*RRDSWSLLEHP
Trigger: GGGGTGTTCCAGCAGAGACCAGGAGTCTCTCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR TCA 90 bp GGCATGGGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGTCATTCAGGTGGTTaGGCCAGGCAGACACGTCCA +
Preference number: 4 (lower is better)
Translates to: GMGVSTRPFLDPALPTACGHSGG*ARQTRP
Trigger: TGGACGTGTCTGCCTGGCTCAACCACCTGAATGACC...GCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACCCATGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR TCA 90 bp TGGTCTCTGCTGGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTAGCGGTCATTCAGGTGGTTaGGCCAGGCAGACACGTCCA +
Preference number: 4 (lower is better)
Translates to: WSLLEHPSQPAACIPVASGHSGG*ARQTRP
Trigger: TGGACGTGTCTGCCTGGCTCAACCACCTGAATGACC...GCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAGCAGAGACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR TCA 90 bp AGACAACAATCCTGCTCCTCTCTGTCCCCTGGCATGGGTGTGAGCACGAGGCCCAAGTGCAGCAGCATCTaGTCCGTGGCCAGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: RQQSCSSLSPGMGVSTRPKCSSI*SVASCC
Trigger: GCAGCAGCTGGCCACGGATCAGATGCTGCTGCACTT...GGGCCTCGTGCTCACACCCATGCCAGGGGACAGAGAGGAGCAGGATTGTTGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp TGGTCTCTGCTGGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTAGCCTGCAGCCCCTCGGGTaGATGCACGCAGACATTGTT +
Preference number: 4 (lower is better)
Translates to: WSLLEHPSQPAACIPVASLQPLG*MHADIV
Trigger: AACAATGTCTGCGTGCATGCACCCGAGGGGCTGCAG...GCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAGCAGAGACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp AACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACCCTGGGTCCTCGTCCTGTCTCTaGATGCGAGAGTTGGGAACC +
Preference number: 4 (lower is better)
Translates to: NTPASQQPAFQWLARHPGSSSCL*MRELGT
Trigger: GGTTCCCAACTCTCGCATCCAGAGACAGGACGAGGA...CCCAGGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp CAGCCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACCCTGGGCTAGCCTTTCATCCACCTCTGGGCCCTaGGCCAGCTTTTCCCCATCT +
Preference number: 4 (lower is better)
Translates to: QPAACIPVASQTPWASLSSTSGP*ASFSPS
Trigger: AGATGGGGAAAAGCTGGCCCAGGGCCCAGAGGTGGA...TGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp TCAGACCTGGGAGGGCATTCGACTGGGAGTGGACAACCCCTCTCGGTCAATGCTGCACAGGCTGTGAGGTaGACAGGGCCCCATCCACCT +
Preference number: 4 (lower is better)
Translates to: SDLGGHSTGSGQPLSVNAAQAVR*TGPHPP
Trigger: AGGTGGATGGGGCCCTGTCCACCTCACAGCCTGTGC...AGCATTGACCGAGAGGGGTTGTCCACTCCCAGTCGAATGCCCTCCCAGGTCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS-3UTR CCA 90 bp TCCTGGTCTCTGCTGGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTCCCAGGTCATTCAGGTaGTTGAGCCAGGCAGACACG +
Preference number: 4 (lower is better)
Translates to: SWSLLEHPSQPAACIPVAPRSFR*LSQADT
Trigger: CGTGTCTGCCTGGCTCAACCACCTGAATGACCTGGG...AGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAGCAGAGACCAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp GGCATGGGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCAGCAGGAGCCATCGGTaGCAGAAGAGCATCTGGAGG +
Preference number: 4 (lower is better)
Translates to: GMGVSTRPFLDPALPTACSRSHR*QKSIWR
Trigger: CCTCCAGATGCTCTTCTGCCACCGATGGCTCCTGCT...GCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACCCATGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp GCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAGAGACTCCTGGTCTCTGTCTGAGCCTGGGTGGTaGCCAGCACACTCCACAGCT +
Preference number: 4 (lower is better)
Translates to: ALSRPCLAHSLRRDSWSLSEPGW*PAHSTA
Trigger: AGCTGTGGAGTGTGCTGGCCACCACCCAGGCTCAGA...CAGAGACCAGGAGTCTCTCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR TCA 90 bp ATGGGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAGAGAGCTCTCGGGAGTaGTATAGCGTAGGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: MGVSTRPFLDPALPTACGESSRE*YSVGPP
Trigger: AGGAGGCCCTACGCTATATCACTCCCGAGAGCTCTC...TCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACCCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR TCA 90 bp GTGGCTAGCCAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGGACAGGAGAGCTCTCGGGAGTaGTATAGCGTAGGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: VASQTPWASLSGAELQGQESSRE*YSVGPP
Trigger: AGGAGGCCCTACGCTATATCACTCCCGAGAGCTCTC...CTGTCCCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR TCA 90 bp TCAGACCTGGGAGGGCATTCGACTGGGAGTGGACAACCCCTCTCGGTCAATGCTTGCAAGCCTCGTCACTaGAGAAGAGCCGCAGGGAGC +
Preference number: 4 (lower is better)
Translates to: SDLGGHSTGSGQPLSVNACKPRH*RRAAGS
Trigger: GCTCCCTGCGGCTCTTCTTCAGTGACGAGGCTTGCA...AGCATTGACCGAGAGGGGTTGTCCACTCCCAGTCGAATGCCCTCCCAGGTCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS-3UTR GCA 90 bp TGGTCTCTGCTGGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTAGCAGCCCCTCGGGTGCATaGACGCAGACATTGTTCTTG +
Preference number: 4 (lower is better)
Translates to: WSLLEHPSQPAACIPVASSPSGA*TQTLFL
Trigger: CAAGAACAATGTCTGCGTGCATGCACCCGAGGGGCT...GCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAGCAGAGACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp ATGGGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGACTGCAGCCCCTCGGGTaGATGCACGCAGACATTGTT +
Preference number: 4 (lower is better)
Translates to: MGVSTRPFLDPALPTACGLQPLG*MHADIV
Trigger: AACAATGTCTGCGTGCATGCACCCGAGGGGCTGCAG...TCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp GTTCTAGAGCCCGATTTTGTCATCATGACAAGGTTCCCTTCACCCTGGCCAGAGTGCTCCCCAGGGCCCTaGAGCCCCTCGGGTGCATGC +
Preference number: 4 (lower is better)
Translates to: VLEPDFVIMTRFPSPWPECSPGP*SPSGAC
Trigger: GCATGCACCCGAGGGGCTGCAGGGCCCTGGGGAGCA...CTCTGGCCAGGGTGAAGGGAACCTTGTCATGATGACAAAATCGGGCTCTAGAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp ACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAGAGACTCCTGGTTCTGCAGGAGGCCATTaGTGTCAGGGAACCGCAGGT +
Preference number: 4 (lower is better)
Translates to: TRPFLDPALPTACGETPGSAGGH*CQGTAG
Trigger: ACCTGCGGTTCCCTGACAGCAATGGCCTCCTGCAGA...ACCAGGAGTCTCTCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp CAACAATCCTGCTCCTCTCTGTCCCCTGGCATGGGTGTGAGCACGAGGCCCTTTTCCGTGGCCAGCTGCTaGTCGATGACATCATCCCCG +
Preference number: 4 (lower is better)
Translates to: QQSCSSLSPGMGVSTRPFSVASC*SMTSSP
Trigger: CGGGGATGATGTCATCGAGCAGCAGCTGGCCACGGA...AAAGGGCCTCGTGCTCACACCCATGCCAGGGGACAGAGAGGAGCAGGATTGTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp GGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAGAGACCCACTGTCCCACATaGCTGTCCCACACAGCTTAC +
Preference number: 4 (lower is better)
Translates to: GVSTRPFLDPALPTACGETHCPT*LSHTAY
Trigger: GTAAGCTGTGTGGGACAGGCATGTGGGACAGTGGGT...CTCTCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp TGGTCTCTGCTGGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTAGCATGGCAACTCCACTGTaGCCCCATAGGGACAGCTCT +
Preference number: 4 (lower is better)
Translates to: WSLLEHPSQPAACIPVASMATPL*PHRDSS
Trigger: AGAGCTGTCCCTATGGGGGCACAGTGGAGTTGCCAT...GCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAGCAGAGACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp GGCATGGGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCTCCTCGTCCTGTCTCTaGATGCGAGAGTTGGGAACC +
Preference number: 4 (lower is better)
Translates to: GMGVSTRPFLDPALPTACSSSCL*MRELGT
Trigger: GGTTCCCAACTCTCGCATCCAGAGACAGGACGAGGA...GCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACCCATGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp ATGGGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAAATCAGGGGAGGCCTTaGCTCTGTGGGAGAGGGTTG +
Preference number: 4 (lower is better)
Translates to: MGVSTRPFLDPALPTACGNQGRP*LCGRGL
Trigger: CAACCCTCTCCCACAGAGCCAAGGCCTCCCCTGATT...TCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp GTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAGAGACTCAGAGGACGGCAGCTTaGGCCTTCGGATGGAGAACT +
Preference number: 4 (lower is better)
Translates to: VSTRPFLDPALPTACGETQRTAA*AFGWRT
Trigger: AGTTCTCCATCCGAAGGCCCAAGCTGCCGTCCTCTG...AGTCTCTCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp GCTAGCCAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGGACAGCTGAGGCTCTCCTCAGGGTaGATTTCAGAGGACGGCAGC +
Preference number: 4 (lower is better)
Translates to: ASQTPWASLSGAELQGQLRLSSG*ISEDGS
Trigger: GCTGCCGTCCTCTGAAATCCACCCTGAGGAGAGCCT...CAGCTGTCCCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp GGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAGAGCATCATCCCCGTAGATaGCGACGATGGCCACACAGA +
Preference number: 4 (lower is better)
Translates to: GVSTRPFLDPALPTACGEHHPRR*RRWPHR
Trigger: TCTGTGTGGCCATCGTCGCCATCTACGGGGATGATG...CTCTCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR TCA 90 bp CTTGCCCAGGACCTCATGGCGGTCCCCTCGTCGATGGTCAAGGGCAGGGGCTTTGCACCAGAAGGTGTCTaGTTCATCCAAGACTTCAGC +
Preference number: 4 (lower is better)
Translates to: LAQDLMAVPSSMVKGRGFAPEGV*FIQDFS
Trigger: GCTGAAGTCTTGGATGAATCAGACACCTTCTGGTGC...AAAGCCCCTGCCCTTGACCATCGACGAGGGGACCGCCATGAGGTCCTGGGCAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp ATGGGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAAGCCCCTCGGGTGCATaGACGCAGACATTGTTCTTG +
Preference number: 4 (lower is better)
Translates to: MGVSTRPFLDPALPTACGSPSGA*TQTLFL
Trigger: CAAGAACAATGTCTGCGTGCATGCACCCGAGGGGCT...TCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp AGACAACAATCCTGCTCCTCTCTGTCCCCTGGCATGGGTGTGAGCACGAGGCCCCGTCCTGTCTCTGGATaGGAGAGTTGGGAACCCATG +
Preference number: 4 (lower is better)
Translates to: RQQSCSSLSPGMGVSTRPRPVSG*ESWEPM
Trigger: CATGGGTTCCCAACTCTCGCATCCAGAGACAGGACG...GGGCCTCGTGCTCACACCCATGCCAGGGGACAGAGAGGAGCAGGATTGTTGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp ATGGGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGACGTCCTGTCTCTGGATaGGAGAGTTGGGAACCCATG +
Preference number: 4 (lower is better)
Translates to: MGVSTRPFLDPALPTACGRPVSG*ESWEPM
Trigger: CATGGGTTCCCAACTCTCGCATCCAGAGACAGGACG...TCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACCCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp GTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAGAGACTATGGCAACTCCACTGTaGCCCCATAGGGACAGCTCT +
Preference number: 4 (lower is better)
Translates to: VSTRPFLDPALPTACGETMATPL*PHRDSS
Trigger: AGAGCTGTCCCTATGGGGGCACAGTGGAGTTGCCAT...AGTCTCTCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp TCAGACCTGGGAGGGCATTCGACTGGGAGTGGACAACCCCTCTCGGTCAATGCTTACTCCTCCTCCACCTaGCCCAGGTCATTCAGGTGG +
Preference number: 4 (lower is better)
Translates to: SDLGGHSTGSGQPLSVNAYSSST*PRSFRW
Trigger: CCACCTGAATGACCTGGGCCAGGTGGAGGAGGAGTA...AGCATTGACCGAGAGGGGTTGTCCACTCCCAGTCGAATGCCCTCCCAGGTCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS-3UTR CCA 90 bp TTCCAGTGGCTAGCCAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGCTCCCGCGGTGCCTTTaGGCCTTTCTTGCCTTCTCT +
Preference number: 4 (lower is better)
Translates to: FQWLARHPGLAFQELNSRLPRCL*AFLAFS
Trigger: AGAGAAGGCAAGAAAGGCCCAAAGGCACCGCGGGAG...CCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCACTGGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR TCA 90 bp GCTAGCCAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGGACAGCTGTGTTCTTGGAGTAGATaGCCTCTCCATCCAGGACGG +
Preference number: 4 (lower is better)
Translates to: ASQTPWASLSGAELQGQLCSWSR*PLHPGR
Trigger: CCGTCCTGGATGGAGAGGTCATCTACTCCAAGAACA...CAGCTGTCCCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR TCA 90 bp CTAGACCCTGCCTTGCCCACAGCTTGCGGAGAGACTCCTGGTCTCTGCTGGAACTGTTCTTGGAGTAGATaGCCTCTCCATCCAGGACGG +
Preference number: 4 (lower is better)
Translates to: LDPALPTACGETPGLCWNCSWSR*PLHPGR
Trigger: CCGTCCTGGATGGAGAGGTCATCTACTCCAAGAACA...GTTCCAGCAGAGACCAGGAGTCTCTCCGCAAGCTGTGGGCAAGGCAGGGTCTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR TCA 90 bp TCCTGGTCTCTGCTGGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTCGTCTTTGTCCACAGTaGACTGCACATTACGCCAGA +
Preference number: 4 (lower is better)
Translates to: SWSLLEHPSQPAACIPVARLCPQ*TAHYAR
Trigger: TCTGGCGTAATGTGCAGTTCACTGTGGACAAAGACG...AGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAGCAGAGACCAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR TCA 90 bp CAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGGACAGCTGATACCTCCAGCTGCTGCTCGATaGCATCATCCCCGTAGATGG +
Preference number: 4 (lower is better)
Translates to: QTPWASLSGAELQGQLIPPAAAR*HHPRRW
Trigger: CCATCTACGGGGATGATGTCATCGAGCAGCAGCTGG...AGGTATCAGCTGTCCCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp AGCCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACCCTGGGCTAGCCTTTCAGATCCCTGAGTCACTATaGACAGGCTGTGAGGTGGAC +
Preference number: 4 (lower is better)
Translates to: SQQPAFQWLARHPGLAFQIPESL*TGCEVD
Trigger: GTCCACCTCACAGCCTGTGCATAGTGACTCAGGGAT...CTGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp GGCATGGGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGTGCAGAATTTCCATTaGTGGAACACCTCGGAGAGC +
Preference number: 4 (lower is better)
Translates to: GMGVSTRPFLDPALPTACVQNFH*WNTSES
Trigger: GCTCTCCGAGGTGTTCCAGCAATGGAAATTCTGCAC...GCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACCCATGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp GGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAGAGGTGCAGAATTTCCATTaGTGGAACACCTCGGAGAGC +
Preference number: 4 (lower is better)
Translates to: GVSTRPFLDPALPTACGEVQNFH*WNTSES
Trigger: GCTCTCCGAGGTGTTCCAGCAATGGAAATTCTGCAC...CTCTCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp GGGGTGATAGGCAGTGTGGATATACCTGTTTGTGGCTCTAGCTTCCAGGAAGAGCAGGCACAGATACCCTaGGTGGTGCTCCCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: GVIGSVDIPVCGSSFQEEQAQIP*VVLPRA
Trigger: GGCCCTGGGGAGCACCACCCAGGGTATCTGTGCCTG...CTCTTCCTGGAAGCTAGAGCCACAAACAGGTATATCCACACTGCCTATCACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS-3UTR CCA 90 bp CAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGGACAGCTGATACCTTCCTCCGTCCCATCCTaGGAGCTGACTGTAGACAGG +
Preference number: 4 (lower is better)
Translates to: QTPWASLSGAELQGQLIPSSVPS*ELTVDR
Trigger: CCTGTCTACAGTCAGCTCCCAGGATGGGACGGAGGA...AGGTATCAGCTGTCCCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp ACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTGCTCCTCGGTTGGCATCGGAGCTaGAGGGGGAGCTGCCCTCGC +
Preference number: 4 (lower is better)
Translates to: TMKLRKCAWFTQTTILLLGWHRS*RGSCPR
Trigger: GCGAGGGCAGCTCCCCCTCCAGCTCCGATGCCAACC...GAGGAGCAGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp GCTAGCCAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGGACAGCTGGCTTGGGCCTTCGGATaGAGAACTGCATACATGTCC +
Preference number: 4 (lower is better)
Translates to: ASQTPWASLSGAELQGQLAWAFG*RTAYMS
Trigger: GGACATGTATGCAGTTCTCCATCCGAAGGCCCAAGC...CAGCTGTCCCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp CAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGGACAGCTGATACCTCAGAGGACGGCAGCTTaGGCCTTCGGATGGAGAACT +
Preference number: 4 (lower is better)
Translates to: QTPWASLSGAELQGQLIPQRTAA*AFGWRT
Trigger: AGTTCTCCATCCGAAGGCCCAAGCTGCCGTCCTCTG...AGGTATCAGCTGTCCCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp CCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACCCTGGGCTAGCCTTTCAGGAGCTCCTCTGGAGTCATaGAGAGCCTCTTTTGCTGGA +
Preference number: 4 (lower is better)
Translates to: PAACIPVASQTPWASLSGAPLES*RASFAG
Trigger: TCCAGCAAAAGAGGCTCTCCATGACTCCAGAGGAGC...TCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp GTGGCTAGCCAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGGACAGGCTCCTCTGGAGTCATaGAGAGCCTCTTTTGCTGGA +
Preference number: 4 (lower is better)
Translates to: VASQTPWASLSGAELQGQAPLES*RASFAG
Trigger: TCCAGCAAAAGAGGCTCTCCATGACTCCAGAGGAGC...CTGTCCCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp CAGCCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACCCTGGGCTAGCCTTTCACATGCTCTCCACGTTTaGATTGTCCTCCCCTCGGAA +
Preference number: 4 (lower is better)
Translates to: QPAACIPVASQTPWASLSHALHV*IVLPSE
Trigger: TTCCGAGGGGAGGACAATCCAAACGTGGAGAGCATG...TGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp CTGGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACCCCTCCATTCATATGCATaGCCAGGTTTCCGAAGTGCA +
Preference number: 4 (lower is better)
Translates to: LEHPSQPAACIPVASQTPLHSYA*PGFRSA
Trigger: TGCACTTCGGAAACCTGGCCATGCATATGAATGGAG...GGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR CAA 72 bp GGAGGCAGCTTCCAAGCCAGGCCAGATGCCTTTGTCTaGGCTGGGGAGTTATATTCTCCCCCTTCTCCGGGA +
Preference number: 4 (lower is better)
Translates to: GGSFQARPDAFV*AGELYSPPSPG
Trigger: TCCCGGAGAAGGGGGAGAATATAACTCCCCAGCCAAGACAAAGGCATCTGGCCTGGCTTGGAAGCTGCCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS-3UTR TCA 90 bp GTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAGAGACTCGTCTTTGTCCACAGTaGACTGCACATTACGCCAGA +
Preference number: 4 (lower is better)
Translates to: VSTRPFLDPALPTACGETRLCPQ*TAHYAR
Trigger: TCTGGCGTAATGTGCAGTTCACTGTGGACAAAGACG...AGTCTCTCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp GACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTGCTCCTAGATACCCTGGGTGGTaGTCCCCAGGGCCCTGCAGC +
Preference number: 4 (lower is better)
Translates to: DHEASQVCLVHSDNNPAPRYPGW*SPGPCS
Trigger: GCTGCAGGGCCCTGGGGAGCACCACCCAGGGTATCT...AGGAGCAGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp TTCCAGTGGCTAGCCAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGTCTGTAGGGCTGATGTaGGCAGTATCCTGCGTGTTC +
Preference number: 4 (lower is better)
Translates to: FQWLARHPGLAFQELNSRSVGLM*AVSCVF
Trigger: GAACACGCAGGATACTGCGCACATCAGCCCTACAGA...CCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCACTGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp TGCTGGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACCTTTTGCTGGATGGCTaGGTATTCCTTTCGCTTCTG +
Preference number: 4 (lower is better)
Translates to: CWNTPASQQPAFQWLARHLLLDG*VFLSLL
Trigger: CAGAAGCGAAAGGAATACGCAGCCATCCAGCAAAAG...GTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp CTGTGCCCAGTGAAGACATCCTCTAACCCAGAGAGAGGAGGACACATTCTGCTGTCCGTGGCCAGCTGCTaGTCGATGACATCATCCCCG +
Preference number: 4 (lower is better)
Translates to: LCPVKTSSNPERGGHILLSVASC*SMTSSP
Trigger: CGGGGATGATGTCATCGAGCAGCAGCTGGCCACGGA...CAGCAGAATGTGTCCTCCTCTCTCTGGGTTAGAGGATGTCTTCACTGGGCACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS-3UTR CCA 90 bp TGCTGGAACACCCCAGCCAGCCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACTGCCACCAAAGAAAATaGCCTGGCGTAGCTTGTACT +
Preference number: 4 (lower is better)
Translates to: CWNTPASQQPAFQWLARHCHQRK*PGVACT
Trigger: AGTACAAGCTACGCCAGGCCATTTTCTTTGGTGGCA...GTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCTGGCTGGGGTGTTCCAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp CAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGGACAGCTGATACCTCATCATCCCCGTAGATaGCGACGATGGCCACACAGA +
Preference number: 4 (lower is better)
Translates to: QTPWASLSGAELQGQLIPHHPRR*RRWPHR
Trigger: TCTGTGTGGCCATCGTCGCCATCTACGGGGATGATG...AGGTATCAGCTGTCCCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp CAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGGACAGCTGATACCTATCCCTGAGTCACTATaGACAGGCTGTGAGGTGGAC +
Preference number: 4 (lower is better)
Translates to: QTPWASLSGAELQGQLIPIPESL*TGCEVD
Trigger: GTCCACCTCACAGCCTGTGCATAGTGACTCAGGGAT...AGGTATCAGCTGTCCCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp GTCAAAGGAGCCTTTCAGGAGCTGACCCTGACAGCAAGCATTCCTCTTCCCACTTCTGCAGGAGGCCATTaGTGTCAGGGAACCGCAGGT +
Preference number: 4 (lower is better)
Translates to: VKGAFQELTLTASIPLPTSAGGH*CQGTAG
Trigger: ACCTGCGGTTCCCTGACAGCAATGGCCTCCTGCAGA...AGTGGGAAGAGGAATGCTTGCTGTCAGGGTCAGCTCCTGAAAGGCTCCTTTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS-3UTR GCA 90 bp CAACAATCCTGCTCCTCTCTGTCCCCTGGCATGGGTGTGAGCACGAGGCCCTTTATGGAGAGCCTCTTTTaGTGGATGGCTGCGTATTCC +
Preference number: 4 (lower is better)
Translates to: QQSCSSLSPGMGVSTRPFMESLF*WMAAYS
Trigger: GGAATACGCAGCCATCCAGCAAAAGAGGCTCTCCAT...AAAGGGCCTCGTGCTCACACCCATGCCAGGGGACAGAGAGGAGCAGGATTGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp GTGGCTAGCCAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGGACAGTTGTCCACAGTGAACTaGACATTACGCCAGAAGGCT +
Preference number: 4 (lower is better)
Translates to: VASQTPWASLSGAELQGQLSTVN*TLRQKA
Trigger: AGCCTTCTGGCGTAATGTGCAGTTCACTGTGGACAA...CTGTCCCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp CCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACCCTGGGCTAGCCTTTCAGGATTGTCCACAGTGAACTaGACATTACGCCAGAAGGCT +
Preference number: 4 (lower is better)
Translates to: PAACIPVASQTPWASLSGLSTVN*TLRQKA
Trigger: AGCCTTCTGGCGTAATGTGCAGTTCACTGTGGACAA...TCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp GCCCGATTTTGTCATCATGACAAGGTTCCCTTCACCCTGGCCAGAGGCTTTTCCTCCTCCGTCCCATCCTaGGAGCTGACTGTAGACAGG +
Preference number: 4 (lower is better)
Translates to: ARFCHHDKVPFTLARGFSSSVPS*ELTVDR
Trigger: CCTGTCTACAGTCAGCTCCCAGGATGGGACGGAGGA...GGAAAAGCCTCTGGCCAGGGTGAAGGGAACCTTGTCATGATGACAAAATCGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp AGCCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACCCTGGGCTAGCCTTTCAGCAGAATTTCCATTGCTaGAACACCTCGGAGAGCTTG +
Preference number: 4 (lower is better)
Translates to: SQQPAFQWLARHPGLAFQQNFHC*NTSESL
Trigger: CAAGCTCTCCGAGGTGTTCCAGCAATGGAAATTCTG...CTGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp GTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAGAGACTTGCCACCAAAGAAAATaGCCTGGCGTAGCTTGTACT +
Preference number: 4 (lower is better)
Translates to: VSTRPFLDPALPTACGETCHQRK*PGVACT
Trigger: AGTACAAGCTACGCCAGGCCATTTTCTTTGGTGGCA...AGTCTCTCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp CAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGGACAGCTGATACCTCGCGTTCCTCCGACGTaGACTCGTGGCTATAATAGT +
Preference number: 4 (lower is better)
Translates to: QTPWASLSGAELQGQLIPRVPPT*TRGYNS
Trigger: ACTATTATAGCCACGAGTCCACGTCGGAGGAACGCG...AGGTATCAGCTGTCCCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR TCA 90 bp ACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTGCTCCTCTGCAAGCCTCGTCACTaGAGAAGAGCCGCAGGGAGC +
Preference number: 4 (lower is better)
Translates to: TMKLRKCAWFTQTTILLLCKPRH*RRAAGS
Trigger: GCTCCCTGCGGCTCTTCTTCAGTGACGAGGCTTGCA...GAGGAGCAGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR TCA 90 bp TTAGTGAGAAAAGCCAAAAGGCAGAGGCATCTCCACCGACCCTGCCGCCTGCACGCACCAGAAGGTGTCTaGTTCATCCAAGACTTCAGC +
Preference number: 4 (lower is better)
Translates to: LVRKAKRQRHLHRPCRLHAPEGV*FIQDFS
Trigger: GCTGAAGTCTTGGATGAATCAGACACCTTCTGGTGC...GTGCAGGCGGCAGGGTCGGTGGAGATGCCTCTGCCTTTTGGCTTTTCTCACTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS-3UTR TCA 90 bp GACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTGCTCCTGGCTCCTGGCCTTCCTaGGCACCAGCTCTCCATTCA +
Preference number: 4 (lower is better)
Translates to: DHEASQVCLVHSDNNPAPGSWPS*APALHS
Trigger: TGAATGGAGAGCTGGTGCTCAGGAAGGCCAGGAGCC...AGGAGCAGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGTC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp CGATTTTGTCATCATGACAAGGTTCCCTTCACCCTGGCCAGAGGCTTTTCCTTGTCCCAGCGAGGCGTCTaGAGGAGGCCATTGCTGTCA +
Preference number: 4 (lower is better)
Translates to: RFCHHDKVPFTLARGFSLSQRGV*RRPLLS
Trigger: TGACAGCAATGGCCTCCTGCAGACGCCTCGCTGGGA...CAAGGAAAAGCCTCTGGCCAGGGTGAAGGGAACCTTGTCATGATGACAAAATCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp CTAGACCCTGCCTTGCCCACAGCTTGCGGAGAGACTCCTGGTCTCTGCTGGAACGGATCGACACATCAATaGCACCAAAGAAAATGGCCT +
Preference number: 4 (lower is better)
Translates to: LDPALPTACGETPGLCWNGSTHQ*HQRKWP
Trigger: AGGCCATTTTCTTTGGTGGCATTGATGTGTCGATCC...GTTCCAGCAGAGACCAGGAGTCTCTCCGCAAGCTGTGGGCAAGGCAGGGTCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp CAGCCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACCCTGGGCTAGCCTTTCAACAAAGATGGTGTTCTaGATCAAACCCACGAAGCAC +
Preference number: 4 (lower is better)
Translates to: QPAACIPVASQTPWASLSTKMVF*IKPTKH
Trigger: GTGCTTCGTGGGTTTGATGCAGAACACCATCTTTGT...TGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp ATGGGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAACAAAGATGGTGTTCTaGATCAAACCCACGAAGCAC +
Preference number: 4 (lower is better)
Translates to: MGVSTRPFLDPALPTACGTKMVF*IKPTKH
Trigger: GTGCTTCGTGGGTTTGATGCAGAACACCATCTTTGT...TCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp CAACAATCCTGCTCCTCTCTGTCCCCTGGCATGGGTGTGAGCACGAGGCCCTTTAGCTCTCCATTCATATaGATGGCCAGGTTTCCGAAG +
Preference number: 4 (lower is better)
Translates to: QQSCSSLSPGMGVSTRPFSSPFI*MARFPK
Trigger: CTTCGGAAACCTGGCCATGCATATGAATGGAGAGCT...AAAGGGCCTCGTGCTCACACCCATGCCAGGGGACAGAGAGGAGCAGGATTGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp TTGGACAGGAGTCTTCATGCCAGTCTTGCAGCTGTGACCATGAAGCTTCGCAAGAATCAGGGGAGGCCTTaGCTCTGTGGGAGAGGGTTG +
Preference number: 4 (lower is better)
Translates to: LDRSLHASLAAVTMKLRKNQGRP*LCGRGL
Trigger: CAACCCTCTCCCACAGAGCCAAGGCCTCCCCTGATT...CTTGCGAAGCTTCATGGTCACAGCTGCAAGACTGGCATGAAGACTCCTGTCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp AGCTGTGACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTGCACAGGCTGTGAGGTaGACAGGGCCCCATCCACCT +
Preference number: 4 (lower is better)
Translates to: SCDHEASQVCLVHSDNNPAQAVR*TGPHPP
Trigger: AGGTGGATGGGGCCCTGTCCACCTCACAGCCTGTGC...AGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGTCACAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp TTTCTTTCTCTTTTGGACAGGAGTCTTCATGCCAGTCTTGCAGCTGTGACCATGCGCAGGGAGCGCATGTaGCCCAGGTCCACTCGGAAC +
Preference number: 4 (lower is better)
Translates to: FLSLLDRSLHASLAAVTMRRERM*PRSTRN
Trigger: GTTCCGAGTGGACCTGGGCCACATGCGCTCCCTGCG...CATGGTCACAGCTGCAAGACTGGCATGAAGACTCCTGTCCAAAAGAGAAAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS-3UTR CCA 90 bp GACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTGCTCCTTGGCAGAAGAGCATCTaGAGGCCGTCCTCACCCAGG +
Preference number: 4 (lower is better)
Translates to: DHEASQVCLVHSDNNPAPWQKSI*RPSSPR
Trigger: CCTGGGTGAGGACGGCCTCCAGATGCTCTTCTGCCA...AGGAGCAGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR CAA 72 bp CGTGGAGGAATCCAGGCTCCTTGCTTGCACCAGCTTTaGGGACACTGGCTAGGAAAGCTCTGGAACACACTT +
Preference number: 4 (lower is better)
Translates to: RGGIQAPCLHQL*GHWLGKLWNTL
Trigger: AAGTGTGTTCCAGAGCTTTCCTAGCCAGTGTCCCAAAAGCTGGTGCAAGCAAGGAGCCTGGATTCCTCCACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS-3UTR TCA 90 bp ACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTGCTCCTCCCAGCTGCTGCTCGATaGCATCATCCCCGTAGATGG +
Preference number: 4 (lower is better)
Translates to: TMKLRKCAWFTQTTILLLPAAAR*HHPRRW
Trigger: CCATCTACGGGGATGATGTCATCGAGCAGCAGCTGG...GAGGAGCAGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp GCCCGATTTTGTCATCATGACAAGGTTCCCTTCACCCTGGCCAGAGGCTTTTCCTCTGTAGGGCTGATGTaGGCAGTATCCTGCGTGTTC +
Preference number: 4 (lower is better)
Translates to: ARFCHHDKVPFTLARGFSSVGLM*AVSCVF
Trigger: GAACACGCAGGATACTGCGCACATCAGCCCTACAGA...GGAAAAGCCTCTGGCCAGGGTGAAGGGAACCTTGTCATGATGACAAAATCGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp AGCTGTGACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTTCCACCTCTGGGCCCTaGGCCAGCTTTTCCCCATCT +
Preference number: 4 (lower is better)
Translates to: SCDHEASQVCLVHSDNNPSTSGP*ASFSPS
Trigger: AGATGGGGAAAAGCTGGCCCAGGGCCCAGAGGTGGA...AGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGTCACAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp CGATTTTGTCATCATGACAAGGTTCCCTTCACCCTGGCCAGAGGCTTTTCCTTGTACTCCTCCTCCACCTaGCCCAGGTCATTCAGGTGG +
Preference number: 4 (lower is better)
Translates to: RFCHHDKVPFTLARGFSLYSSST*PRSFRW
Trigger: CCACCTGAATGACCTGGGCCAGGTGGAGGAGGAGTA...CAAGGAAAAGCCTCTGGCCAGGGTGAAGGGAACCTTGTCATGATGACAAAATCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp TTCCCAGGGCTGGATGCTGGCTTCAGCCGTTCAACTTGCTTTGACATGGTTAGCCGCGTTCCTCCGACGTaGACTCGTGGCTATAATAGT +
Preference number: 4 (lower is better)
Translates to: FPGLDAGFSRSTCFDMVSRVPPT*TRGYNS
Trigger: ACTATTATAGCCACGAGTCCACGTCGGAGGAACGCG...GCTAACCATGTCAAAGCAAGTTGAACGGCTGAAGCCAGCATCCAGCCCTGGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS-3UTR CCA 90 bp CGATTTTGTCATCATGACAAGGTTCCCTTCACCCTGGCCAGAGGCTTTTCCTTGAGCAGGAGCCATCGGTaGCAGAAGAGCATCTGGAGG +
Preference number: 4 (lower is better)
Translates to: RFCHHDKVPFTLARGFSLSRSHR*QKSIWR
Trigger: CCTCCAGATGCTCTTCTGCCACCGATGGCTCCTGCT...CAAGGAAAAGCCTCTGGCCAGGGTGAAGGGAACCTTGTCATGATGACAAAATCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp TTGGACAGGAGTCTTCATGCCAGTCTTGCAGCTGTGACCATGAAGCTTCGCAAGTATTCCTTTCGCTTCTaGGACCGAAGTGCCTCGCGT +
Preference number: 4 (lower is better)
Translates to: LDRSLHASLAAVTMKLRKYSFRF*DRSASR
Trigger: ACGCGAGGCACTTCGGTCGCAGAAGCGAAAGGAATA...CTTGCGAAGCTTCATGGTCACAGCTGCAAGACTGGCATGAAGACTCCTGTCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp CGATTTTGTCATCATGACAAGGTTCCCTTCACCCTGGCCAGAGGCTTTTCCTTGACCCACTGTCCCACATaGCTGTCCCACACAGCTTAC +
Preference number: 4 (lower is better)
Translates to: RFCHHDKVPFTLARGFSLTHCPT*LSHTAY
Trigger: GTAAGCTGTGTGGGACAGGCATGTGGGACAGTGGGT...CAAGGAAAAGCCTCTGGCCAGGGTGAAGGGAACCTTGTCATGATGACAAAATCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp TTGGACAGGAGTCTTCATGCCAGTCTTGCAGCTGTGACCATGAAGCTTCGCAAGAGCTTACACAGGTCATaGAGGCTGCAGGGTATCCGT +
Preference number: 4 (lower is better)
Translates to: LDRSLHASLAAVTMKLRKSLHRS*RLQGIR
Trigger: ACGGATACCCTGCAGCCTCCATGACCTGTGTAAGCT...CTTGCGAAGCTTCATGGTCACAGCTGCAAGACTGGCATGAAGACTCCTGTCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp CACTGTCCTGCAGCACCACTCTTAGTGAGAAAAGCCAAAAGGCAGAGGCATCTCATGGAGAGCCTCTTTTaGTGGATGGCTGCGTATTCC +
Preference number: 4 (lower is better)
Translates to: HCPAAPLLVRKAKRQRHLMESLF*WMAAYS
Trigger: GGAATACGCAGCCATCCAGCAAAAGAGGCTCTCCAT...GAGATGCCTCTGCCTTTTGGCTTTTCTCACTAAGAGTGGTGCTGCAGGACAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS-3UTR CCA 90 bp ACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTGCTCCTCGCTTGGGCCTTCGGATaGAGAACTGCATACATGTCC +
Preference number: 4 (lower is better)
Translates to: TMKLRKCAWFTQTTILLLAWAFG*RTAYMS
Trigger: GGACATGTATGCAGTTCTCCATCCGAAGGCCCAAGC...GAGGAGCAGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp ACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTGCTCCTCCATGCTCTCCACGTTTaGATTGTCCTCCCCTCGGAA +
Preference number: 4 (lower is better)
Translates to: TMKLRKCAWFTQTTILLLHALHV*IVLPSE
Trigger: TTCCGAGGGGAGGACAATCCAAACGTGGAGAGCATG...GAGGAGCAGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp GACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTGCTCCTAGCTTACACAGGTCATaGAGGCTGCAGGGTATCCGT +
Preference number: 4 (lower is better)
Translates to: DHEASQVCLVHSDNNPAPSLHRS*RLQGIR
Trigger: ACGGATACCCTGCAGCCTCCATGACCTGTGTAAGCT...AGGAGCAGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR CAA 72 bp GCGTCCTTCTCTCCCAGAGCCCTAGATGACAAGGCCTaGGTGACATTAAGCAATGTCGTCAGCACAGACATT +
Preference number: 4 (lower is better)
Translates to: ASFSPRALDDKA*VTLSNVVSTDI
Trigger: AATGTCTGTGCTGACGACATTGCTTAATGTCACCAAGGCCTTGTCATCTAGGGCTCTGGGAGAGAAGGACGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CAA 72 bp TTCTGTAGAAACACAACACTAACACCCAGAGGCCACTaGTCTCTTCAGAGACTCCAGGGATCTGCCAGGTCC +
Preference number: 4 (lower is better)
Translates to: FCRNTTLTPRGH*SLQRLQGSARS
Trigger: GGACCTGGCAGATCCCTGGAGTCTCTGAAGAGACAAGTGGCCTCTGGGTGTTAGTGTTGTGTTTCTACAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CAA 72 bp TCAGAGAAGTCTTTTGAAGGAGTCTGTGGGAGGGCCTaGTTCTCCTTTTATAGGCAAGGAAGTGGGCTGGGG +
Preference number: 4 (lower is better)
Translates to: SEKSFEGVCGRA*FSFYRQGSGLG
Trigger: CCCCAGCCCACTTCCTTGCCTATAAAAGGAGAACAAGGCCCTCCCACAGACTCCTTCAAAAGACTTCTCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS-3UTR CCA 90 bp CACTGTCCTGCAGCACCACTCTTAGTGAGAAAAGCCAAAAGGCAGAGGCATCTCCTCCATTCATATGCATaGCCAGGTTTCCGAAGTGCA +
Preference number: 4 (lower is better)
Translates to: HCPAAPLLVRKAKRQRHLLHSYA*PGFRSA
Trigger: TGCACTTCGGAAACCTGGCCATGCATATGAATGGAG...GAGATGCCTCTGCCTTTTGGCTTTTCTCACTAAGAGTGGTGCTGCAGGACAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CAA 72 bp TCTTGCAGCTGTGACCATGAAGCTTCGCAAGTGTGCTaGGTTCACTCAGACAACAATCCTGCTCCTCTCTGT +
Preference number: 4 (lower is better)
Translates to: SCSCDHEASQVC*VHSDNNPAPLC
Trigger: ACAGAGAGGAGCAGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGTCACAGCTGCAAGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp GTTCTAGAGCCCGATTTTGTCATCATGACAAGGTTCCCTTCACCCTGGCCAGAGGGATCGACACATCAATaGCACCAAAGAAAATGGCCT +
Preference number: 4 (lower is better)
Translates to: VLEPDFVIMTRFPSPWPEGSTHQ*HQRKWP
Trigger: AGGCCATTTTCTTTGGTGGCATTGATGTGTCGATCC...CTCTGGCCAGGGTGAAGGGAACCTTGTCATGATGACAAAATCGGGCTCTAGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CCA 90 bp GACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTGCTCCTCAGAATTTCCATTGCTaGAACACCTCGGAGAGCTTG +
Preference number: 4 (lower is better)
Translates to: DHEASQVCLVHSDNNPAPQNFHC*NTSESL
Trigger: CAAGCTCTCCGAGGTGTTCCAGCAATGGAAATTCTG...AGGAGCAGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp GATTTTGTCATCATGACAAGGTTCCCTTCACCCTGGCCAGAGGCTTTTCCTTGTCTTTTGCTGGATGGCTaGGTATTCCTTTCGCTTCTG +
Preference number: 4 (lower is better)
Translates to: DFVIMTRFPSPWPEAFPCLLLDG*VFLSLL
Trigger: CAGAAGCGAAAGGAATACGCAGCCATCCAGCAAAAG...ACAAGGAAAAGCCTCTGGCCAGGGTGAAGGGAACCTTGTCATGATGACAAAATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR GCA 90 bp GATTTTGTCATCATGACAAGGTTCCCTTCACCCTGGCCAGAGGCTTTTCCTTGTAGCTCTCCATTCATATaGATGGCCAGGTTTCCGAAG +
Preference number: 4 (lower is better)
Translates to: DFVIMTRFPSPWPEAFPCSSPFI*MARFPK
Trigger: CTTCGGAAACCTGGCCATGCATATGAATGGAGAGCT...ACAAGGAAAAGCCTCTGGCCAGGGTGAAGGGAACCTTGTCATGATGACAAAATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
3UTR CAA 72 bp TTCTGCAAACCTGAAATGCTATCTTCCCACCTGGAATaGAACACAATGTATTTAAAGGCCTGGTGGCAGCAG +
Preference number: 4 (lower is better)
Translates to: FCKPEMLSSHLE*NTMYLKAWWQQ
Trigger: CTGCTGCCACCAGGCCTTTAAATACATTGTGTTCAATTCCAGGTGGGAAGATAGCATTTCAGGTTTGCAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CAA 72 bp CTGGAACACACTTTTATCCAACCACAATCCTCAGCTTaGGAGGATGGAGTGTGGGCGTTTTCCTTATTAAAA +
Preference number: 4 (lower is better)
Translates to: LEHTFIQPQSSA*EDGVWAFSLLK
Trigger: TTTTAATAAGGAAAACGCCCACACTCCATCCTCCAAAGCTGAGGATTGTGGTTGGATAAAAGTGTGTTCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
3UTR CAA 72 bp TATCCTCAAAGTGTGGAAGGAAGACAGTCATGTGACTaGATTTCTGCAAACCTGAAATGCTATCTTCCCACC +
Preference number: 4 (lower is better)
Translates to: YPQSVEGRQSCD*ISANLKCYLPT
Trigger: GGTGGGAAGATAGCATTTCAGGTTTGCAGAAATCAAGTCACATGACTGTCTTCCTTCCACACTTTGAGGATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS CCA 90 bp GCCTTGGCTCTGTGGGAGAGGGTTGGTAGAGGGCCCCCAGGCTTGTaGTGCGCCGCCGCCGAGGACGGGGTGCCTTGCGCACAGGAGAGC +
Preference number: 5 (lower is better)
Translates to: ALALWERVGRGPPGL*CAAAEDGVPCAQES
Trigger: GCTCTCCTGTGCGCAAGGCACCCCGTCCTCGGCGGCGGCGCACCACAAGCCTGGGGGCCCTCTACCAACCCTCTCCCACAGAGCCAAGGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 90 bp TTGGCTCTGTGGGAGAGGGTTGGTAGAGGGCCCCCAGGCTTGTGGTaGGCCGCCGCCGAGGACGGGGTGCCTTGCGCACAGGAGAGCTCT +
Preference number: 5 (lower is better)
Translates to: LALWERVGRGPPGLW*AAAEDGVPCAQESS
Trigger: AGAGCTCTCCTGTGCGCAAGGCACCCCGTCCTCGGCGGCGGCGCACCACAAGCCTGGGGGCCCTCTACCAACCCTCTCCCACAGAGCCAA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 90 bp TGCTGTCAGGGAACCGCAGGTTGGCATCGGAGCTGGAGGGGGAGCTaGCCTCGCTCTCCAGGAATGCAGAGCTGTTCCCCTCCGCAAGGG +
Preference number: 5 (lower is better)
Translates to: CCQGTAGWHRSWRGS*PRSPGMQSCSPPQG
Trigger: CCCTTGCGGAGGGGAACAGCTCTGCATTCCTGGAGAGCGAGGGCAGCTCCCCCTCCAGCTCCGATGCCAACCTGCGGTTCCCTGACAGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 90 bp AGGGAGCGCATGTGGCCCAGGTCCACTCGGAACACACCACAGATCTaGTCCAGAGCACATCCCCGCTGGGGCTCATCCCAGCGAGGCGTC +
Preference number: 5 (lower is better)
Translates to: RERMWPRSTRNTPQI*SRAHPRWGSSQRGV
Trigger: GACGCCTCGCTGGGATGAGCCCCAGCGGGGATGTGCTCTGGAGCAGATCTGTGGTGTGTTCCGAGTGGACCTGGGCCACATGCGCTCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 90 bp AGCGAGGCGTCTGCAGGAGGCCATTGCTGTCAGGGAACCGCAGGTTaGCATCGGAGCTGGAGGGGGAGCTGCCCTCGCTCTCCAGGAATG +
Preference number: 5 (lower is better)
Translates to: SEASAGGHCCQGTAG*HRSWRGSCPRSPGM
Trigger: CATTCCTGGAGAGCGAGGGCAGCTCCCCCTCCAGCTCCGATGCCAACCTGCGGTTCCCTGACAGCAATGGCCTCCTGCAGACGCCTCGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp CTTGCCCAGGACCTCATGGCGGTCCCCTCGTCGATGGTCAAGGGCAGGGGCTTTAGGAGGTCTGAGGCCTaGGAGGAGGCCCGACGAAGG +
Preference number: 5 (lower is better)
Translates to: LAQDLMAVPSSMVKGRGFRRSEA*EEARRR
Trigger: CCTTCGTCGGGCCTCCTCCAAGGCCTCAGACCTCCT...AAAGCCCCTGCCCTTGACCATCGACGAGGGGACCGCCATGAGGTCCTGGGCAAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS TCA 90 bp GCCGCCGAGGACGGGGTGCCTTGCGCACAGGAGAGCTCTCGGGAGTaGTATAGCGTAGGGCCTCCTCGTCCTGTCTCTGGATGCGAGAGT +
Preference number: 5 (lower is better)
Translates to: AAEDGVPCAQESSRE*YSVGPPRPVSGCES
Trigger: ACTCTCGCATCCAGAGACAGGACGAGGAGGCCCTACGCTATATCACTCCCGAGAGCTCTCCTGTGCGCAAGGCACCCCGTCCTCGGCGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 90 bp TCCACAGCCTCGGGCCGAGGCTCCCGGCCATCCTCCGTCCCATCCTaGGAGCTGACTGTAGACAGGATCCCTGAGTCACTATGCACAGGC +
Preference number: 5 (lower is better)
Translates to: STASGRGSRPSSVPS*ELTVDRIPESLCTG
Trigger: GCCTGTGCATAGTGACTCAGGGATCCTGTCTACAGTCAGCTCCCAGGATGGGACGGAGGATGGCCGGGAGCCTCGGCCCGAGGCTGTGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 90 bp GCAGGAGGCCATTGCTGTCAGGGAACCGCAGGTTGGCATCGGAGCTaGAGGGGGAGCTGCCCTCGCTCTCCAGGAATGCAGAGCTGTTCC +
Preference number: 5 (lower is better)
Translates to: AGGHCCQGTAGWHRS*RGSCPRSPGMQSCS
Trigger: GGAACAGCTCTGCATTCCTGGAGAGCGAGGGCAGCTCCCCCTCCAGCTCCGATGCCAACCTGCGGTTCCCTGACAGCAATGGCCTCCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp GGCATGGGTGTGAGCACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCCTCTGTGGGAGAGGGTaGGTAGAGGGCCCCCAGGCT +
Preference number: 5 (lower is better)
Translates to: GMGVSTRPFLDPALPTACLCGRG*VEGPQA
Trigger: AGCCTGGGGGCCCTCTACCAACCCTCTCCCACAGAG...GCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGTGCTCACACCCATGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp ACGAGGCCCTTTCTAGACCCTGCCTTGCCCACAGCTTGCGGAGAGACTCCTGGTTCAGGGAACCGCAGGTaGGCATCGGAGCTGGAGGGG +
Preference number: 5 (lower is better)
Translates to: TRPFLDPALPTACGETPGSGNRR*ASELEG
Trigger: CCCCTCCAGCTCCGATGCCAACCTGCGGTTCCCTGA...ACCAGGAGTCTCTCCGCAAGCTGTGGGCAAGGCAGGGTCTAGAAAGGGCCTCGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 90 bp TCCACTCGGAACACACCACAGATCTGCTCCAGAGCACATCCCCGCTaGGGCTCATCCCAGCGAGGCGTCTGCAGGAGGCCATTGCTGTCA +
Preference number: 5 (lower is better)
Translates to: STRNTPQICSRAHPR*GSSQRGVCRRPLLS
Trigger: TGACAGCAATGGCCTCCTGCAGACGCCTCGCTGGGATGAGCCCCAGCGGGGATGTGCTCTGGAGCAGATCTGTGGTGTGTTCCGAGTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 90 bp AGCCAGGCAGACACGTCCAGCCTCCGGTACAGGCTCTCCTCAGGGTaGATTTCAGAGGACGGCAGCTTGGGCCTTCGGATGGAGAACTGC +
Preference number: 5 (lower is better)
Translates to: SQADTSSLRYRLSSG*ISEDGSLGLRMENC
Trigger: GCAGTTCTCCATCCGAAGGCCCAAGCTGCCGTCCTCTGAAATCCACCCTGAGGAGAGCCTGTACCGGAGGCTGGACGTGTCTGCCTGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 90 bp CAGATACCCTGGGTGGTGCTCCCCAGGGCCCTGCAGCCCCTCGGGTaGATGCACGCAGACATTGTTCTTGGAGTAGATGACCTCTCCATC +
Preference number: 5 (lower is better)
Translates to: QIPWVVLPRALQPLG*MHADIVLGVDDLSI
Trigger: GATGGAGAGGTCATCTACTCCAAGAACAATGTCTGCGTGCATGCACCCGAGGGGCTGCAGGGCCCTGGGGAGCACCACCCAGGGTATCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 90 bp CTCGTGCAAGCCTCGTCACTGAAGAAGAGCCGCAGGGAGCGCATGTaGCCCAGGTCCACTCGGAACACACCACAGATCTGCTCCAGAGCA +
Preference number: 5 (lower is better)
Translates to: LVQASSLKKSRRERM*PRSTRNTPQICSRA
Trigger: TGCTCTGGAGCAGATCTGTGGTGTGTTCCGAGTGGACCTGGGCCACATGCGCTCCCTGCGGCTCTTCTTCAGTGACGAGGCTTGCACGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp CAACAATCCTGCTCCTCTCTGTCCCCTGGCATGGGTGTGAGCACGAGGCCCTTTGTCTGCAGGAGGCCATaGCTGTCAGGGAACCGCAGG +
Preference number: 5 (lower is better)
Translates to: QQSCSSLSPGMGVSTRPFVCRRP*LSGNRR
Trigger: CCTGCGGTTCCCTGACAGCAATGGCCTCCTGCAGAC...AAAGGGCCTCGTGCTCACACCCATGCCAGGGGACAGAGAGGAGCAGGATTGTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp CTGCCAGGTTCCTTCCCTCTGTCTGGCCAGCCCCGGGTATGCCTGACACTCCTGTCATGCTCTCCACGTTaGGATTGTCCTCCCCTCGGA +
Preference number: 5 (lower is better)
Translates to: LPGSFPLSGQPRVCLTLLSCSPR*DCPPLG
Trigger: TCCGAGGGGAGGACAATCCAAACGTGGAGAGCATGA...CAGGAGTGTCAGGCATACCCGGGGCTGGCCAGACAGAGGGAAGGAACCTGGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS-3UTR CAA 90 bp CTTGCCCAGGACCTCATGGCGGTCCCCTCGTCGATGGTCAAGGGCAGGGGCTTTTCATGCTCTCCACGTTaGGATTGTCCTCCCCTCGGA +
Preference number: 5 (lower is better)
Translates to: LAQDLMAVPSSMVKGRGFSCSPR*DCPPLG
Trigger: TCCGAGGGGAGGACAATCCAAACGTGGAGAGCATGA...AAAGCCCCTGCCCTTGACCATCGACGAGGGGACCGCCATGAGGTCCTGGGCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 90 bp GGGCCCTGGGCCAGCTTTTCCCCATCTTCATCTGTAGGGCTGATGTaGGCAGTATCCTGCGTGTTCTGGACCACCACCAGGATGTCCTCG +
Preference number: 5 (lower is better)
Translates to: GPWASFSPSSSVGLM*AVSCVFWTTTRMSS
Trigger: CGAGGACATCCTGGTGGTGGTCCAGAACACGCAGGATACTGCGCACATCAGCCCTACAGATGAAGATGGGGAAAAGCTGGCCCAGGGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 90 bp CCTCCCGCGGTGCCTTTGGGCCTTTCTTGCCTTCTCTTGAAGGCTTaGGTGATGGCAACTCCACTGTGCCCCCATAGGGACAGCTCTCTG +
Preference number: 5 (lower is better)
Translates to: PPAVPLGLSCLLLKA*VMATPLCPHRDSSL
Trigger: CAGAGAGCTGTCCCTATGGGGGCACAGTGGAGTTGCCATCACCCAAGCCTTCAAGAGAAGGCAAGAAAGGCCCAAAGGCACCGCGGGAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp GTGGCTAGCCAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGGACAGCTCTGGATGCGAGAGTaGGGAACCCATGCCAGGATG +
Preference number: 5 (lower is better)
Translates to: VASQTPWASLSGAELQGQLWMRE*GTHARM
Trigger: CATCCTGGCATGGGTTCCCAACTCTCGCATCCAGAG...CTGTCCCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp TCAGACCTGGGAGGGCATTCGACTGGGAGTGGACAACCCCTCTCGGTCAATGCTATGGCCTGGCGTAGCTaGTACTCCTCCTCCACCTGG +
Preference number: 5 (lower is better)
Translates to: SDLGGHSTGSGQPLSVNAMAWRS*YSSSTW
Trigger: CCAGGTGGAGGAGGAGTACAAGCTACGCCAGGCCAT...AGCATTGACCGAGAGGGGTTGTCCACTCCCAGTCGAATGCCCTCCCAGGTCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS GCA 90 bp AGGGCGAAGAGAAGGCGTCAGAGTCCGAGTCAAAGGAGCTATCCCTaGTCACGCCATCGGCCGACAACTCCAAAGAGCCCTCTTCCTCCA +
Preference number: 5 (lower is better)
Translates to: RAKRRRQSPSQRSYP*SRHRPTTPKSPLPP
Trigger: TGGAGGAAGAGGGCTCTTTGGAGTTGTCGGCCGATGGCGTGAGCAGGGATAGCTCCTTTGACTCGGACTCTGACGCCTTCTCTTCGCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 90 bp TGTCCCACATGCCTGTCCCACACAGCTTACACAGGTCATGGAGGCTaGAGGGTATCCGTGGTAGAAGGCGGAACTGGTACAGGAGGCTCC +
Preference number: 5 (lower is better)
Translates to: CPTCLSHTAYTGHGG*RVSVVEGGTGTGGS
Trigger: GGAGCCTCCTGTACCAGTTCCGCCTTCTACCACGGATACCCTGCAGCCTCCATGACCTGTGTAAGCTGTGTGGGACAGGCATGTGGGACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 90 bp CTTTCTTGCCTTCTCTTGAAGGCTTGGGTGATGGCAACTCCACTGTaGCCCCATAGGGACAGCTCTCTGAGCCTGGGTGGTGGCCAGCAC +
Preference number: 5 (lower is better)
Translates to: LSCLLLKAWVMATPL*PHRDSSLSLGGGQH
Trigger: GTGCTGGCCACCACCCAGGCTCAGAGAGCTGTCCCTATGGGGGCACAGTGGAGTTGCCATCACCCAAGCCTTCAAGAGAAGGCAAGAAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 90 bp CCACCAAAGAAAATGGCCTGGCGTAGCTTGTACTCCTCCTCCACCTaGCCCAGGTCATTCAGGTGGTTGAGCCAGGCAGACACGTCCAGC +
Preference number: 5 (lower is better)
Translates to: PPKKMAWRSLYSSST*PRSFRWLSQADTSS
Trigger: GCTGGACGTGTCTGCCTGGCTCAACCACCTGAATGACCTGGGCCAGGTGGAGGAGGAGTACAAGCTACGCCAGGCCATTTTCTTTGGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp CCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACCCTGGGCTAGCCTTTCAGGAAGGATGTCCTCGTCTTaGGGAATCAGGGGAGGCCTT +
Preference number: 5 (lower is better)
Translates to: PAACIPVASQTPWASLSGRMSSS*GIRGGL
Trigger: AAGGCCTCCCCTGATTCCCAAAGACGAGGACATCCT...TCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp CCACCCTCATGGCAGCCTCAGAGAAGTCTTTTGAAGGAGTCTGTGGGAGGGCCTTCAGAGGACGGCAGCTaGGGCCTTCGGATGGAGAAC +
Preference number: 5 (lower is better)
Translates to: PPSWQPQRSLLKESVGGPSEDGS*GLRMEN
Trigger: GTTCTCCATCCGAAGGCCCAAGCTGCCGTCCTCTGA...AGGCCCTCCCACAGACTCCTTCAAAAGACTTCTCTGAGGCTGCCATGAGGGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS GCA 90 bp GGGTGGATTTCAGAGGACGGCAGCTTGGGCCTTCGGATGGAGAACTaGATACATGTCCTCTCATCCGTGACCTGCTGGTCCCTGAGGTGT +
Preference number: 5 (lower is better)
Translates to: GWISEDGSLGLRMEN*IHVLSSVTCWSLRC
Trigger: ACACCTCAGGGACCAGCAGGTCACGGATGAGAGGACATGTATGCAGTTCTCCATCCGAAGGCCCAAGCTGCCGTCCTCTGAAATCCACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS GCA 90 bp ATGGAGAGCCTCTTTTGCTGGATGGCTGCGTATTCCTTTCGCTTCTaGGACCGAAGTGCCTCGCGTTCCTCCGACGTGGACTCGTGGCTA +
Preference number: 5 (lower is better)
Translates to: MESLFCWMAAYSFRF*DRSASRSSDVDSWL
Trigger: TAGCCACGAGTCCACGTCGGAGGAACGCGAGGCACTTCGGTCGCAGAAGCGAAAGGAATACGCAGCCATCCAGCAAAAGAGGCTCTCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 90 bp ATCTTCGGAAACCAAAGGCCTCCCGCGGTGCCTTTGGGCCTTTCTTaGCTTCTCTTGAAGGCTTGGGTGATGGCAACTCCACTGTGCCCC +
Preference number: 5 (lower is better)
Translates to: IFGNQRPPAVPLGLS*LLLKAWVMATPLCP
Trigger: GGGGCACAGTGGAGTTGCCATCACCCAAGCCTTCAAGAGAAGGCAAGAAAGGCCCAAAGGCACCGCGGGAGGCCTTTGGTTTCCGAAGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 90 bp GGGTGGATTTCAGAGGACGGCAGCTTGGGCCTTCGGATGGAGAACTaGATACATGTCCTCTCATCCGTGACCTGGTCCCTGAGGTGTGTC +
Preference number: 5 (lower is better)
Translates to: GWISEDGSLGLRMEN*IHVLSSVTWSLRCV
Trigger: GACACACCTCAGGGACCAGGTCACGGATGAGAGGACATGTATGCAGTTCTCCATCCGAAGGCCCAAGCTGCCGTCCTCTGAAATCCACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207655.2
CDS CCA 90 bp CAGTATCCTGCGTGTTCTGGACCACCACCAGGATGTCCTCGTCTTTaGGAATCAGGGGAGGCCTTGGCTCTGTGGGAGAGGGTTGGTAGA +
Preference number: 5 (lower is better)
Translates to: QYPACSGPPPGCPRL*ESGEALALWERVGR
Trigger: TCTACCAACCCTCTCCCACAGAGCCAAGGCCTCCCCTGATTCCCAAAGACGAGGACATCCTGGTGGTGGTCCAGAACACGCAGGATACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 90 bp TACCCACTGTCCCACATGCCTGTCCCACACAGCTTACACAGGTCATaGAGGCTGCAGGGTATCCGTGGTAGAAGGCGGAACTGGTACAGG +
Preference number: 5 (lower is better)
Translates to: YPLSHMPVPHSLHRS*RLQGIRGRRRNWYR
Trigger: CCTGTACCAGTTCCGCCTTCTACCACGGATACCCTGCAGCCTCCATGACCTGTGTAAGCTGTGTGGGACAGGCATGTGGGACAGTGGGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp CAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGGACAGCTGATACCTCTCTGGATGCGAGAGTaGGGAACCCATGCCAGGATG +
Preference number: 5 (lower is better)
Translates to: QTPWASLSGAELQGQLIPLWMRE*GTHARM
Trigger: CATCCTGGCATGGGTTCCCAACTCTCGCATCCAGAG...AGGTATCAGCTGTCCCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp CAGCCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACCCTGGGCTAGCCTTTCACGTGCAGAATTTCCATaGCTGGAACACCTCGGAGAG +
Preference number: 5 (lower is better)
Translates to: QPAACIPVASQTPWASLSRAEFP*LEHLGE
Trigger: CTCTCCGAGGTGTTCCAGCAATGGAAATTCTGCACG...TGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp CCACCCTCATGGCAGCCTCAGAGAAGTCTTTTGAAGGAGTCTGTGGGAGGGCCTAGGTCATTCAGGTGGTaGAGCCAGGCAGACACGTCC +
Preference number: 5 (lower is better)
Translates to: PPSWQPQRSLLKESVGGPRSFRW*SQADTS
Trigger: GGACGTGTCTGCCTGGCTCAACCACCTGAATGACCT...AGGCCCTCCCACAGACTCCTTCAAAAGACTTCTCTGAGGCTGCCATGAGGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS-3UTR CAA 90 bp GCTAGCCAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGGACAGCTGGTCCGAACCACGTCTTaGTCCACAGTGAACTGCACA +
Preference number: 5 (lower is better)
Translates to: ASQTPWASLSGAELQGQLVRTTS*STVNCT
Trigger: TGTGCAGTTCACTGTGGACAAAGACGTGGTTCGGAC...CAGCTGTCCCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp CAGCCAGCAGCCTGCATTCCAGTGGCTAGCCAGACACCCTGGGCTAGCCTTTCACCTCGGAAGAACTGGTaGTTCCTATCTGTCCGAACC +
Preference number: 5 (lower is better)
Translates to: QPAACIPVASQTPWASLSPRKNW*FLSVRT
Trigger: GGTTCGGACAGATAGGAACAACCAGTTCTTCCGAGG...TGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCACTGGAATGCAGGCTGCTGGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp AACACTAACACCCAGAGGCCACTTGTCTCTTCAGAGACTCCAGGGATCTGCCAGCCTCCCGCGGTGCCTTaGGGCCTTTCTTGCCTTCTC +
Preference number: 5 (lower is better)
Translates to: NTNTQRPLVSSETPGICQPPAVP*GLSCLL
Trigger: GAGAAGGCAAGAAAGGCCCAAAGGCACCGCGGGAGG...CTGGCAGATCCCTGGAGTCTCTGAAGAGACAAGTGGCCTCTGGGTGTTAGTGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS CCA 90 bp ATTCCTTTCGCTTCTGCGACCGAAGTGCCTCGCGTTCCTCCGACGTaGACTCGTGGCTATAATAGTGCAGCAGAAAAGGCCAGACCTCCC +
Preference number: 5 (lower is better)
Translates to: IPFASATEVPRVPPT*TRGYNSAAEKARPP
Trigger: GGGAGGTCTGGCCTTTTCTGCTGCACTATTATAGCCACGAGTCCACGTCGGAGGAACGCGAGGCACTTCGGTCGCAGAAGCGAAAGGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp GACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTGCTCCTAGGAGGTCTGAGGCCTaGGAGGAGGCCCGACGAAGG +
Preference number: 5 (lower is better)
Translates to: DHEASQVCLVHSDNNPAPRRSEA*EEARRR
Trigger: CCTTCGTCGGGCCTCCTCCAAGGCCTCAGACCTCCT...AGGAGCAGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp ACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTGCTCCTCTCAGGGAACCGCAGGTaGGCATCGGAGCTGGAGGGG +
Preference number: 5 (lower is better)
Translates to: TMKLRKCAWFTQTTILLLSGNRR*ASELEG
Trigger: CCCCTCCAGCTCCGATGCCAACCTGCGGTTCCCTGA...GAGGAGCAGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp GTTCTAGAGCCCGATTTTGTCATCATGACAAGGTTCCCTTCACCCTGGCCAGAGGTCTGCAGGAGGCCATaGCTGTCAGGGAACCGCAGG +
Preference number: 5 (lower is better)
Translates to: VLEPDFVIMTRFPSPWPEVCRRP*LSGNRR
Trigger: CCTGCGGTTCCCTGACAGCAATGGCCTCCTGCAGAC...CTCTGGCCAGGGTGAAGGGAACCTTGTCATGATGACAAAATCGGGCTCTAGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp TTCCAGTGGCTAGCCAGACACCCTGGGCTAGCCTTTCAGGAGCTGAACTCCAGGGTCCGAACCACGTCTTaGTCCACAGTGAACTGCACA +
Preference number: 5 (lower is better)
Translates to: FQWLARHPGLAFQELNSRVRTTS*STVNCT
Trigger: TGTGCAGTTCACTGTGGACAAAGACGTGGTTCGGAC...CCTGGAGTTCAGCTCCTGAAAGGCTAGCCCAGGGTGTCTGGCTAGCCACTGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 90 bp GGCCTTCGGATGGAGAACTGCATACATGTCCTCTCATCCGTGACCTaGTGGTCCCTGAGGTGTGTCTCCGTGCAGAATTTCCATTGCTGG +
Preference number: 5 (lower is better)
Translates to: GLRMENCIHVLSSVT*WSLRCVSVQNFHCW
Trigger: CCAGCAATGGAAATTCTGCACGGAGACACACCTCAGGGACCAGCAGGTCACGGATGAGAGGACATGTATGCAGTTCTCCATCCGAAGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS GCA 90 bp CTTTTGCTGGATGGCTGCGTATTCCTTTCGCTTCTGCGACCGAAGTaGCTCGCGTTCCTCCGACGTGGACTCGTGGCTATAATAGTGCAG +
Preference number: 5 (lower is better)
Translates to: LLLDGCVFLSLLRPK*LAFLRRGLVAIIVQ
Trigger: CTGCACTATTATAGCCACGAGTCCACGTCGGAGGAACGCGAGGCACTTCGGTCGCAGAAGCGAAAGGAATACGCAGCCATCCAGCAAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp CCACCCTCATGGCAGCCTCAGAGAAGTCTTTTGAAGGAGTCTGTGGGAGGGCCTCCTCGGAAGAACTGGTaGTTCCTATCTGTCCGAACC +
Preference number: 5 (lower is better)
Translates to: PPSWQPQRSLLKESVGGPPRKNW*FLSVRT
Trigger: GGTTCGGACAGATAGGAACAACCAGTTCTTCCGAGG...AGGCCCTCCCACAGACTCCTTCAAAAGACTTCTCTGAGGCTGCCATGAGGGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS GCA 90 bp ACGTCTTTGTCCACAGTGAACTGCACATTACGCCAGAAGGCTCTCTaGTCCTCTGGAGTCATGGAGAGCCTCTTTTGCTGGATGGCTGCG +
Preference number: 5 (lower is better)
Translates to: TSLSTVNCTLRQKAL*SSGVMESLFCWMAA
Trigger: CGCAGCCATCCAGCAAAAGAGGCTCTCCATGACTCCAGAGGAGCAGAGAGCCTTCTGGCGTAATGTGCAGTTCACTGTGGACAAAGACGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 90 bp GGCCTTCGGATGGAGAACTGCATACATGTCCTCTCATCCGTGACCTaGTCCCTGAGGTGTGTCTCCGTGCAGAATTTCCATTGCTGGAAC +
Preference number: 5 (lower is better)
Translates to: GLRMENCIHVLSSVT*SLRCVSVQNFHCWN
Trigger: GTTCCAGCAATGGAAATTCTGCACGGAGACACACCTCAGGGACCAGGTCACGGATGAGAGGACATGTATGCAGTTCTCCATCCGAAGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp GACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTGCTCCTTCAGAGGACGGCAGCTaGGGCCTTCGGATGGAGAAC +
Preference number: 5 (lower is better)
Translates to: DHEASQVCLVHSDNNPAPSEDGS*GLRMEN
Trigger: GTTCTCCATCCGAAGGCCCAAGCTGCCGTCCTCTGA...AGGAGCAGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp AGCTGTGACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTCCTCCCGCGGTGCCTTaGGGCCTTTCTTGCCTTCTC +
Preference number: 5 (lower is better)
Translates to: SCDHEASQVCLVHSDNNPPPAVP*GLSCLL
Trigger: GAGAAGGCAAGAAAGGCCCAAAGGCACCGCGGGAGG...AGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGTCACAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 90 bp AGCTTTTCCCCATCTTCATCTGTAGGGCTGATGTGCGCAGTATCCTaGGTGTTCTGGACCACCACCAGGATGTCCTCGTCTTTGGGAATC +
Preference number: 5 (lower is better)
Translates to: SFSPSSSVGLMCAVS*VFWTTTRMSSSLGI
Trigger: GATTCCCAAAGACGAGGACATCCTGGTGGTGGTCCAGAACACGCAGGATACTGCGCACATCAGCCCTACAGATGAAGATGGGGAAAAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 90 bp CTTCGGATGGAGAACTGCATACATGTCCTCTCATCCGTGACCTGCTaGTCCCTGAGGTGTGTCTCCGTGCAGAATTTCCATTGCTGGAAC +
Preference number: 5 (lower is better)
Translates to: LRMENCIHVLSSVTC*SLRCVSVQNFHCWN
Trigger: GTTCCAGCAATGGAAATTCTGCACGGAGACACACCTCAGGGACCAGCAGGTCACGGATGAGAGGACATGTATGCAGTTCTCCATCCGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS-3UTR CAA 90 bp AGCTGTGACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTATGGCCTGGCGTAGCTaGTACTCCTCCTCCACCTGG +
Preference number: 5 (lower is better)
Translates to: SCDHEASQVCLVHSDNNPMAWRS*YSSSTW
Trigger: CCAGGTGGAGGAGGAGTACAAGCTACGCCAGGCCAT...AGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGTCACAGCT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 90 bp TGGTTGTTCCTATCTGTCCGAACCACGTCTTTGTCCACAGTGAACTaGACATTACGCCAGAAGGCTCTCTGCTCCTCTGGAGTCATGGAG +
Preference number: 5 (lower is better)
Translates to: WLFLSVRTTSLSTVN*TLRQKALCSSGVME
Trigger: CTCCATGACTCCAGAGGAGCAGAGAGCCTTCTGGCGTAATGTGCAGTTCACTGTGGACAAAGACGTGGTTCGGACAGATAGGAACAACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 90 bp CTCCTCATGCTCTCCACGTTTGGATTGTCCTCCCCTCGGAAGAACTaGTTGTTCCTATCTGTCCGAACCACGTCTTTGTCCACAGTGAAC +
Preference number: 5 (lower is better)
Translates to: LLMLSTFGLSSPRKN*LFLSVRTTSLSTVN
Trigger: GTTCACTGTGGACAAAGACGTGGTTCGGACAGATAGGAACAACCAGTTCTTCCGAGGGGAGGACAATCCAAACGTGGAGAGCATGAGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp TTGGACAGGAGTCTTCATGCCAGTCTTGCAGCTGTGACCATGAAGCTTCGCAAGCGTGCAGAATTTCCATaGCTGGAACACCTCGGAGAG +
Preference number: 5 (lower is better)
Translates to: LDRSLHASLAAVTMKLRKRAEFP*LEHLGE
Trigger: CTCTCCGAGGTGTTCCAGCAATGGAAATTCTGCACG...CTTGCGAAGCTTCATGGTCACAGCTGCAAGACTGGCATGAAGACTCCTGTCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp AGCTGTGACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTAGGTCATTCAGGTGGTaGAGCCAGGCAGACACGTCC +
Preference number: 5 (lower is better)
Translates to: SCDHEASQVCLVHSDNNPRSFRW*SQADTS
Trigger: GGACGTGTCTGCCTGGCTCAACCACCTGAATGACCT...AGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGTCACAGCT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS TCA 90 bp AGAACTGGTTGTTCCTATCTGTCCGAACCACGTCTTTGTCCACAGTaGACTGCACATTACGCCAGAAGGCTCTCTGCTCCTCTGGAGTCA +
Preference number: 5 (lower is better)
Translates to: RTGCSYLSEPRLCPQ*TAHYARRLSAPLES
Trigger: TGACTCCAGAGGAGCAGAGAGCCTTCTGGCGTAATGTGCAGTTCACTGTGGACAAAGACGTGGTTCGGACAGATAGGAACAACCAGTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp GACCATGAAGCTTCGCAAGTGTGCTTGGTTCACTCAGACAACAATCCTGCTCCTGTGAAAAATCTTGTATaGGCTCTCTCGGCTGGCCAC +
Preference number: 5 (lower is better)
Translates to: DHEASQVCLVHSDNNPAPVKNLV*ALSAGH
Trigger: GTGGCCAGCCGAGAGAGCCAATACAAGATTTTTCAC...AGGAGCAGGATTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS-3UTR CAA 90 bp CGATTTTGTCATCATGACAAGGTTCCCTTCACCCTGGCCAGAGGCTTTTCCTTGGTGAAAAATCTTGTATaGGCTCTCTCGGCTGGCCAC +
Preference number: 5 (lower is better)
Translates to: RFCHHDKVPFTLARGFSLVKNLV*ALSAGH
Trigger: GTGGCCAGCCGAGAGAGCCAATACAAGATTTTTCAC...CAAGGAAAAGCCTCTGGCCAGGGTGAAGGGAACCTTGTCATGATGACAAAATCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 72 bp TGGGAGAGGGTTGGTAGAGGGCCCCCAGGCTTGTGGTaGGCCGCCGCCGAGGACGGGGTGCCTTGCGCACAG +
Preference number: 6 (lower is better)
Translates to: WERVGRGPPGLW*AAAEDGVPCAQ
Trigger: CTGTGCGCAAGGCACCCCGTCCTCGGCGGCGGCGCACCACAAGCCTGGGGGCCCTCTACCAACCCTCTCCCA
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 72 bp CTGTGGGAGAGGGTTGGTAGAGGGCCCCCAGGCTTGTaGTGCGCCGCCGCCGAGGACGGGGTGCCTTGCGCA +
Preference number: 6 (lower is better)
Translates to: LWERVGRGPPGL*CAAAEDGVPCA
Trigger: TGCGCAAGGCACCCCGTCCTCGGCGGCGGCGCACCACAAGCCTGGGGGCCCTCTACCAACCCTCTCCCACAG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CAA 72 bp GCTCTGTGGGAGAGGGTTGGTAGAGGGCCCCCAGGCTaGTGGTGCGCCGCCGCCGAGGACGGGGTGCCTTGC +
Preference number: 6 (lower is better)
Translates to: ALWERVGRGPPG*WCAAAEDGVPC
Trigger: GCAAGGCACCCCGTCCTCGGCGGCGGCGCACCACAAGCCTGGGGGCCCTCTACCAACCCTCTCCCACAGAGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CAA 90 bp GAGGCCTTGGCTCTGTGGGAGAGGGTTGGTAGAGGGCCCCCAGGCTaGTGGTGCGCCGCCGCCGAGGACGGGGTGCCTTGCGCACAGGAG +
Preference number: 6 (lower is better)
Translates to: EALALWERVGRGPPG*WCAAAEDGVPCAQE
Trigger: CTCCTGTGCGCAAGGCACCCCGTCCTCGGCGGCGGCGCACCACAAGCCTGGGGGCCCTCTACCAACCCTCTCCCACAGAGCCAAGGCCTC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 72 bp CCCCAGGCTTGTGGTGCGCCGCCGCCGAGGACGGGGTaGCTTGCGCACAGGAGAGCTCTCGGGAGTGATATA +
Preference number: 6 (lower is better)
Translates to: PQACGAPPPRTG*LAHRRALGSDI
Trigger: TATATCACTCCCGAGAGCTCTCCTGTGCGCAAGGCACCCCGTCCTCGGCGGCGGCGCACCACAAGCCTGGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 72 bp GGAGCTGGAGGGGGAGCTGCCCTCGCTCTCCAGGAATaGAGAGCTGTTCCCCTCCGCAAGGGCCGCACTGAT +
Preference number: 6 (lower is better)
Translates to: GAGGGAALALQE*RAVPLRKGRTD
Trigger: ATCAGTGCGGCCCTTGCGGAGGGGAACAGCTCTGCATTCCTGGAGAGCGAGGGCAGCTCCCCCTCCAGCTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 72 bp GGGGCTCATCCCAGCGAGGCGTCTGCAGGAGGCCATTaGTGTCAGGGAACCGCAGGTTGGCATCGGAGCTGG +
Preference number: 6 (lower is better)
Translates to: GAHPSEASAGGH*CQGTAGWHRSW
Trigger: CCAGCTCCGATGCCAACCTGCGGTTCCCTGACAGCAATGGCCTCCTGCAGACGCCTCGCTGGGATGAGCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CAA 72 bp GTCTGCAGGAGGCCATTGCTGTCAGGGAACCGCAGGTaGGCATCGGAGCTGGAGGGGGAGCTGCCCTCGCTC +
Preference number: 6 (lower is better)
Translates to: VCRRPLLSGNRR*ASELEGELPSL
Trigger: GAGCGAGGGCAGCTCCCCCTCCAGCTCCGATGCCAACCTGCGGTTCCCTGACAGCAATGGCCTCCTGCAGAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CAA 90 bp CAGCGAGGCGTCTGCAGGAGGCCATTGCTGTCAGGGAACCGCAGGTaGGCATCGGAGCTGGAGGGGGAGCTGCCCTCGCTCTCCAGGAAT +
Preference number: 6 (lower is better)
Translates to: QRGVCRRPLLSGNRR*ASELEGELPSLSRN
Trigger: ATTCCTGGAGAGCGAGGGCAGCTCCCCCTCCAGCTCCGATGCCAACCTGCGGTTCCCTGACAGCAATGGCCTCCTGCAGACGCCTCGCTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 72 bp AGGCACAGATACCCTGGGTGGTGCTCCCCAGGGCCCTaGAGCCCCTCGGGTGCATGCACGCAGACATTGTTC +
Preference number: 6 (lower is better)
Translates to: RHRYPGWCSPGP*SPSGACTQTLF
Trigger: GAACAATGTCTGCGTGCATGCACCCGAGGGGCTGCAGGGCCCTGGGGAGCACCACCCAGGGTATCTGTGCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 72 bp GGAACCGCAGGTTGGCATCGGAGCTGGAGGGGGAGCTaGCCTCGCTCTCCAGGAATGCAGAGCTGTTCCCCT +
Preference number: 6 (lower is better)
Translates to: GTAGWHRSWRGS*PRSPGMQSCSP
Trigger: AGGGGAACAGCTCTGCATTCCTGGAGAGCGAGGGCAGCTCCCCCTCCAGCTCCGATGCCAACCTGCGGTTCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 72 bp TCTGCAGGAGGCCATTGCTGTCAGGGAACCGCAGGTTaGCATCGGAGCTGGAGGGGGAGCTGCCCTCGCTCT +
Preference number: 6 (lower is better)
Translates to: SAGGHCCQGTAG*HRSWRGSCPRS
Trigger: AGAGCGAGGGCAGCTCCCCCTCCAGCTCCGATGCCAACCTGCGGTTCCCTGACAGCAATGGCCTCCTGCAGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CAA 72 bp TGGGGCTCATCCCAGCGAGGCGTCTGCAGGAGGCCATaGCTGTCAGGGAACCGCAGGTTGGCATCGGAGCTG +
Preference number: 6 (lower is better)
Translates to: WGSSQRGVCRRP*LSGNRRLASEL
Trigger: CAGCTCCGATGCCAACCTGCGGTTCCCTGACAGCAATGGCCTCCTGCAGACGCCTCGCTGGGATGAGCCCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 72 bp CCTCGTCTTTGGGAATCAGGGGAGGCCTTGGCTCTGTaGGAGAGGGTTGGTAGAGGGCCCCCAGGCTTGTGG +
Preference number: 6 (lower is better)
Translates to: PRLWESGEALAL*ERVGRGPPGLW
Trigger: CCACAAGCCTGGGGGCCCTCTACCAACCCTCTCCCACAGAGCCAAGGCCTCCCCTGATTCCCAAAGACGAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 72 bp CATTGCTGTCAGGGAACCGCAGGTTGGCATCGGAGCTaGAGGGGGAGCTGCCCTCGCTCTCCAGGAATGCAG +
Preference number: 6 (lower is better)
Translates to: HCCQGTAGWHRS*RGSCPRSPGMQ
Trigger: CTGCATTCCTGGAGAGCGAGGGCAGCTCCCCCTCCAGCTCCGATGCCAACCTGCGGTTCCCTGACAGCAATG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 72 bp AACACACCACAGATCTGCTCCAGAGCACATCCCCGCTaGGGCTCATCCCAGCGAGGCGTCTGCAGGAGGCCA +
Preference number: 6 (lower is better)
Translates to: NTPQICSRAHPR*GSSQRGVCRRP
Trigger: TGGCCTCCTGCAGACGCCTCGCTGGGATGAGCCCCAGCGGGGATGTGCTCTGGAGCAGATCTGTGGTGTGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CAA 90 bp GCAGAAGAGCATCTGGAGGCCGTCCTCACCCAGGGACACCAGGTGTaGGTAGAAGCGCTGGTGTGTCAGCCGCAGCAGCTCCCGCAGGTA +
Preference number: 6 (lower is better)
Translates to: AEEHLEAVLTQGHQV*VEALVCQPQQLPQV
Trigger: TACCTGCGGGAGCTGCTGCGGCTGACACACCAGCGCTTCTACCAACACCTGGTGTCCCTGGGTGAGGACGGCCTCCAGATGCTCTTCTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CAA 90 bp CAGGCCTCCCAGATACGCAGGGCCTCGGCCTCAGGAAACTCTCGCTaGAAGCAGAGCAGGAGCCATCGGTGGCAGAAGAGCATCTGGAGG +
Preference number: 6 (lower is better)
Translates to: QASQIRRASASGNSR*KQSRSHRWQKSIWR
Trigger: CCTCCAGATGCTCTTCTGCCACCGATGGCTCCTGCTCTGCTTCAAGCGAGAGTTTCCTGAGGCCGAGGCCCTGCGTATCTGGGAGGCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS TCA 72 bp GACGGGGTGCCTTGCGCACAGGAGAGCTCTCGGGAGTaGTATAGCGTAGGGCCTCCTCGTCCTGTCTCTGGA +
Preference number: 6 (lower is better)
Translates to: DGVPCAQESSRE*YSVGPPRPVSG
Trigger: TCCAGAGACAGGACGAGGAGGCCCTACGCTATATCACTCCCGAGAGCTCTCCTGTGCGCAAGGCACCCCGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 72 bp ATGTGGCCCAGGTCCACTCGGAACACACCACAGATCTaGTCCAGAGCACATCCCCGCTGGGGCTCATCCCAG +
Preference number: 6 (lower is better)
Translates to: MWPRSTRNTPQI*SRAHPRWGSSQ
Trigger: CTGGGATGAGCCCCAGCGGGGATGTGCTCTGGAGCAGATCTGTGGTGTGTTCCGAGTGGACCTGGGCCACAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 72 bp GCCTCGTCACTGAAGAAGAGCCGCAGGGAGCGCATGTaGCCCAGGTCCACTCGGAACACACCACAGATCTGC +
Preference number: 6 (lower is better)
Translates to: ASSLKKSRRERM*PRSTRNTPQIC
Trigger: GCAGATCTGTGGTGTGTTCCGAGTGGACCTGGGCCACATGCGCTCCCTGCGGCTCTTCTTCAGTGACGAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 72 bp GACACGTCCAGCCTCCGGTACAGGCTCTCCTCAGGGTaGATTTCAGAGGACGGCAGCTTGGGCCTTCGGATG +
Preference number: 6 (lower is better)
Translates to: DTSSLRYRLSSG*ISEDGSLGLRM
Trigger: CATCCGAAGGCCCAAGCTGCCGTCCTCTGAAATCCACCCTGAGGAGAGCCTGTACCGGAGGCTGGACGTGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 72 bp TGGAGGCTGCAGGGTATCCGTGGTAGAAGGCGGAACTaGTACAGGAGGCTCCTGGCCTTCCTGAGCACCAGC +
Preference number: 6 (lower is better)
Translates to: WRLQGIRGRRRN*YRRLLAFLSTS
Trigger: GCTGGTGCTCAGGAAGGCCAGGAGCCTCCTGTACCAGTTCCGCCTTCTACCACGGATACCCTGCAGCCTCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS TCA 72 bp GCAGCAGCATCTGATCCGTGGCCAGCTGCTGCTCGATaGCATCATCCCCGTAGATGGCGACGATGGCCACAC +
Preference number: 6 (lower is better)
Translates to: AAASDPWPAAAR*HHPRRWRRWPH
Trigger: GTGTGGCCATCGTCGCCATCTACGGGGATGATGTCATCGAGCAGCAGCTGGCCACGGATCAGATGCTGCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 72 bp GCGTGTTCTGGACCACCACCAGGATGTCCTCGTCTTTaGGAATCAGGGGAGGCCTTGGCTCTGTGGGAGAGG +
Preference number: 6 (lower is better)
Translates to: ACSGPPPGCPRL*ESGEALALWER
Trigger: CCTCTCCCACAGAGCCAAGGCCTCCCCTGATTCCCAAAGACGAGGACATCCTGGTGGTGGTCCAGAACACGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CAA 72 bp CAGATACGCAGGGCCTCGGCCTCAGGAAACTCTCGCTaGAAGCAGAGCAGGAGCCATCGGTGGCAGAAGAGC +
Preference number: 6 (lower is better)
Translates to: QIRRASASGNSR*KQSRSHRWQKS
Trigger: GCTCTTCTGCCACCGATGGCTCCTGCTCTGCTTCAAGCGAGAGTTTCCTGAGGCCGAGGCCCTGCGTATCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 72 bp TGGGAGCTGACTGTAGACAGGATCCCTGAGTCACTATaGACAGGCTGTGAGGTGGACAGGGCCCCATCCACC +
Preference number: 6 (lower is better)
Translates to: WELTVDRIPESL*TGCEVDRAPST
Trigger: GGTGGATGGGGCCCTGTCCACCTCACAGCCTGTGCATAGTGACTCAGGGATCCTGTCTACAGTCAGCTCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 72 bp TGGTCCCTGAGGTGTGTCTCCGTGCAGAATTTCCATTaGTGGAACACCTCGGAGAGCTTGTCCAGGCCGCCG +
Preference number: 6 (lower is better)
Translates to: WSLRCVSVQNFH*WNTSESLSRPP
Trigger: CGGCGGCCTGGACAAGCTCTCCGAGGTGTTCCAGCAATGGAAATTCTGCACGGAGACACACCTCAGGGACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 72 bp TCCCTGAGGTGTGTCTCCGTGCAGAATTTCCATTGCTaGAACACCTCGGAGAGCTTGTCCAGGCCGCCGTGG +
Preference number: 6 (lower is better)
Translates to: SLRCVSVQNFHC*NTSESLSRPPW
Trigger: CCACGGCGGCCTGGACAAGCTCTCCGAGGTGTTCCAGCAATGGAAATTCTGCACGGAGACACACCTCAGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CAA 72 bp TGCGTGTTCTGGACCACCACCAGGATGTCCTCGTCTTaGGGAATCAGGGGAGGCCTTGGCTCTGTGGGAGAG +
Preference number: 6 (lower is better)
Translates to: CVFWTTTRMSSS*GIRGGLGSVGE
Trigger: CTCTCCCACAGAGCCAAGGCCTCCCCTGATTCCCAAAGACGAGGACATCCTGGTGGTGGTCCAGAACACGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CAA 72 bp CTGGTCCCTGAGGTGTGTCTCCGTGCAGAATTTCCATaGCTGGAACACCTCGGAGAGCTTGTCCAGGCCGCC +
Preference number: 6 (lower is better)
Translates to: LVPEVCLRAEFP*LEHLGELVQAA
Trigger: GGCGGCCTGGACAAGCTCTCCGAGGTGTTCCAGCAATGGAAATTCTGCACGGAGACACACCTCAGGGACCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CAA 90 bp GGAGAGCTTGTCCAGGCCGCCGTGGTGAAAGTGAAAAATCTTGTATaGGCTCTCTCGGCTGGCCACCACCAGCTGGCCACTCGTGCAAGC +
Preference number: 6 (lower is better)
Translates to: GELVQAAVVKVKNLV*ALSAGHHQLATRAS
Trigger: GCTTGCACGAGTGGCCAGCTGGTGGTGGCCAGCCGAGAGAGCCAATACAAGATTTTTCACTTTCACCACGGCGGCCTGGACAAGCTCTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CAA 90 bp CGTGACCTGCTGGTCCCTGAGGTGTGTCTCCGTGCAGAATTTCCATaGCTGGAACACCTCGGAGAGCTTGTCCAGGCCGCCGTGGTGAAA +
Preference number: 6 (lower is better)
Translates to: RDLLVPEVCLRAEFP*LEHLGELVQAAVVK
Trigger: TTTCACCACGGCGGCCTGGACAAGCTCTCCGAGGTGTTCCAGCAATGGAAATTCTGCACGGAGACACACCTCAGGGACCAGCAGGTCACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS CAA 90 bp CTCCGGTACAGGCTCTCCTCAGGGTGGATTTCAGAGGACGGCAGCTaGGGCCTTCGGATGGAGAACTGCATACATGTCCTCTCATCCGTG +
Preference number: 6 (lower is better)
Translates to: LRYRLSSGWISEDGS*GLRMENCIHVLSSV
Trigger: CACGGATGAGAGGACATGTATGCAGTTCTCCATCCGAAGGCCCAAGCTGCCGTCCTCTGAAATCCACCCTGAGGAGAGCCTGTACCGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CAA 90 bp ATCCGTGACCTGGTCCCTGAGGTGTGTCTCCGTGCAGAATTTCCATaGCTGGAACACCTCGGAGAGCTTGTCCAGGCCGCCGTGGTGAAA +
Preference number: 6 (lower is better)
Translates to: IRDLVPEVCLRAEFP*LEHLGELVQAAVVK
Trigger: TTTCACCACGGCGGCCTGGACAAGCTCTCCGAGGTGTTCCAGCAATGGAAATTCTGCACGGAGACACACCTCAGGGACCAGGTCACGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207655.2
CDS GCA 72 bp AGAAGGCGTCAGAGTCCGAGTCAAAGGAGCTATCCCTaGTCACGCCATCGGCCGACAACTCCAAAGAGCCCT +
Preference number: 6 (lower is better)
Translates to: RRRQSPSQRSYP*SRHRPTTPKSP
Trigger: AGGGCTCTTTGGAGTTGTCGGCCGATGGCGTGAGCAGGGATAGCTCCTTTGACTCGGACTCTGACGCCTTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 72 bp GATGGCTGCGTATTCCTTTCGCTTCTGCGACCGAAGTaGCTCGCGTTCCTCCGACGTGGACTCGTGGCTATA +
Preference number: 6 (lower is better)
Translates to: DGCVFLSLLRPK*LAFLRRGLVAI
Trigger: TATAGCCACGAGTCCACGTCGGAGGAACGCGAGGCACTTCGGTCGCAGAAGCGAAAGGAATACGCAGCCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 72 bp CTCTTTTGCTGGATGGCTGCGTATTCCTTTCGCTTCTaGGACCGAAGTGCCTCGCGTTCCTCCGACGTGGAC +
Preference number: 6 (lower is better)
Translates to: LFCWMAAYSFRF*DRSASRSSDVD
Trigger: GTCCACGTCGGAGGAACGCGAGGCACTTCGGTCGCAGAAGCGAAAGGAATACGCAGCCATCCAGCAAAAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 72 bp CACACTCCACAGCTGGCATGTACCCACTGTCCCACATaGCTGTCCCACACAGCTTACACAGGTCATGGAGGC +
Preference number: 6 (lower is better)
Translates to: HTPQLACTHCPT*LSHTAYTGHGG
Trigger: GCCTCCATGACCTGTGTAAGCTGTGTGGGACAGGCATGTGGGACAGTGGGTACATGCCAGCTGTGGAGTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 72 bp CTTCTCTTGAAGGCTTGGGTGATGGCAACTCCACTGTaGCCCCATAGGGACAGCTCTCTGAGCCTGGGTGGT +
Preference number: 6 (lower is better)
Translates to: LLLKAWVMATPL*PHRDSSLSLGG
Trigger: ACCACCCAGGCTCAGAGAGCTGTCCCTATGGGGGCACAGTGGAGTTGCCATCACCCAAGCCTTCAAGAGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 72 bp ATCTTGTATTGGCTCTCTCGGCTGGCCACCACCAGCTaGCCACTCGTGCAAGCCTCGTCACTGAAGAAGAGC +
Preference number: 6 (lower is better)
Translates to: ILYWLSRLATTS*PLVQASSLKKS
Trigger: GCTCTTCTTCAGTGACGAGGCTTGCACGAGTGGCCAGCTGGTGGTGGCCAGCCGAGAGAGCCAATACAAGAT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 72 bp GCTTCTGCGACCGAAGTGCCTCGCGTTCCTCCGACGTaGACTCGTGGCTATAATAGTGCAGCAGAAAAGGCC +
Preference number: 6 (lower is better)
Translates to: ASATEVPRVPPT*TRGYNSAAEKA
Trigger: GGCCTTTTCTGCTGCACTATTATAGCCACGAGTCCACGTCGGAGGAACGCGAGGCACTTCGGTCGCAGAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CAA 72 bp GTCCAGGCCGCCGTGGTGAAAGTGAAAAATCTTGTATaGGCTCTCTCGGCTGGCCACCACCAGCTGGCCACT +
Preference number: 6 (lower is better)
Translates to: VQAAVVKVKNLV*ALSAGHHQLAT
Trigger: AGTGGCCAGCTGGTGGTGGCCAGCCGAGAGAGCCAATACAAGATTTTTCACTTTCACCACGGCGGCCTGGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 72 bp CTCGTCCTGTCTCTGGATGCGAGAGTTGGGAACCCATaGCAGGATGAGGGTAGCTCCCAGCAGCTCATCTTT +
Preference number: 6 (lower is better)
Translates to: LVLSLDARVGNP*QDEGSSQQLIF
Trigger: AAAGATGAGCTGCTGGGAGCTACCCTCATCCTGGCATGGGTTCCCAACTCTCGCATCCAGAGACAGGACGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 72 bp GCCAGCTTTTCCCCATCTTCATCTGTAGGGCTGATGTaGGCAGTATCCTGCGTGTTCTGGACCACCACCAGG +
Preference number: 6 (lower is better)
Translates to: ASFSPSSSVGLM*AVSCVFWTTTR
Trigger: CCTGGTGGTGGTCCAGAACACGCAGGATACTGCGCACATCAGCCCTACAGATGAAGATGGGGAAAAGCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 72 bp TGCCTGTCCCACACAGCTTACACAGGTCATGGAGGCTaGAGGGTATCCGTGGTAGAAGGCGGAACTGGTACA +
Preference number: 6 (lower is better)
Translates to: CLSHTAYTGHGG*RVSVVEGGTGT
Trigger: TGTACCAGTTCCGCCTTCTACCACGGATACCCTGCAGCCTCCATGACCTGTGTAAGCTGTGTGGGACAGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 72 bp GGCTCTCCTCAGGGTGGATTTCAGAGGACGGCAGCTTaGGCCTTCGGATGGAGAACTGCATACATGTCCTCT +
Preference number: 6 (lower is better)
Translates to: GSPQGGFQRTAA*AFGWRTAYMSS
Trigger: AGAGGACATGTATGCAGTTCTCCATCCGAAGGCCCAAGCTGCCGTCCTCTGAAATCCACCCTGAGGAGAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 72 bp GTGCCTTTGGGCCTTTCTTGCCTTCTCTTGAAGGCTTaGGTGATGGCAACTCCACTGTGCCCCCATAGGGAC +
Preference number: 6 (lower is better)
Translates to: VPLGLSCLLLKA*VMATPLCPHRD
Trigger: GTCCCTATGGGGGCACAGTGGAGTTGCCATCACCCAAGCCTTCAAGAGAAGGCAAGAAAGGCCCAAAGGCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CAA 72 bp AGGCTCTCCTCAGGGTGGATTTCAGAGGACGGCAGCTaGGGCCTTCGGATGGAGAACTGCATACATGTCCTC +
Preference number: 6 (lower is better)
Translates to: RLSSGWISEDGS*GLRMENCIHVL
Trigger: GAGGACATGTATGCAGTTCTCCATCCGAAGGCCCAAGCTGCCGTCCTCTGAAATCCACCCTGAGGAGAGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 72 bp CCATCTTCATCTGTAGGGCTGATGTGCGCAGTATCCTaGGTGTTCTGGACCACCACCAGGATGTCCTCGTCT +
Preference number: 6 (lower is better)
Translates to: PSSSVGLMCAVS*VFWTTTRMSSS
Trigger: AGACGAGGACATCCTGGTGGTGGTCCAGAACACGCAGGATACTGCGCACATCAGCCCTACAGATGAAGATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 72 bp CTCTGGAGTCATGGAGAGCCTCTTTTGCTGGATGGCTaGGTATTCCTTTCGCTTCTGCGACCGAAGTGCCTC +
Preference number: 6 (lower is better)
Translates to: LWSHGEPLLLDG*VFLSLLRPKCL
Trigger: GAGGCACTTCGGTCGCAGAAGCGAAAGGAATACGCAGCCATCCAGCAAAAGAGGCTCTCCATGACTCCAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 72 bp TCTGTAGGGCTGATGTGCGCAGTATCCTGCGTGTTCTaGACCACCACCAGGATGTCCTCGTCTTTGGGAATC +
Preference number: 6 (lower is better)
Translates to: SVGLMCAVSCVF*TTTRMSSSLGI
Trigger: GATTCCCAAAGACGAGGACATCCTGGTGGTGGTCCAGAACACGCAGGATACTGCGCACATCAGCCCTACAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 72 bp GGTGAAAGTGAAAAATCTTGTATTGGCTCTCTCGGCTaGCCACCACCAGCTGGCCACTCGTGCAAGCCTCGT +
Preference number: 6 (lower is better)
Translates to: GESEKSCIGSLG*PPPAGHSCKPR
Trigger: ACGAGGCTTGCACGAGTGGCCAGCTGGTGGTGGCCAGCCGAGAGAGCCAATACAAGATTTTTCACTTTCACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 72 bp GCTCCTCTGGAGTCATGGAGAGCCTCTTTTGCTGGATaGCTGCGTATTCCTTTCGCTTCTGCGACCGAAGTG +
Preference number: 6 (lower is better)
Translates to: APLESWRASFAG*LRIPFASATEV
Trigger: CACTTCGGTCGCAGAAGCGAAAGGAATACGCAGCCATCCAGCAAAAGAGGCTCTCCATGACTCCAGAGGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 72 bp GCGCCACCAGATCTGACATGCCCTGTGAGTAGCCGATaGCTGGGTTGTACACAGCATAGTTCAACAGGATCC +
Preference number: 6 (lower is better)
Translates to: APPDLTCPVSSR*LGCTQHSSTGS
Trigger: GGATCCTGTTGAACTATGCTGTGTACAACCCAGCCATCGGCTACTCACAGGGCATGTCAGATCTGGTGGCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CAA 90 bp TCCCCTCGGAAGAACTGGTTGTTCCTATCTGTCCGAACCACGTCTTaGTCCACAGTGAACTGCACATTACGCCAGAAGGCTCTCTGCTCC +
Preference number: 6 (lower is better)
Translates to: SPRKNWLFLSVRTTS*STVNCTLRQKALCS
Trigger: GGAGCAGAGAGCCTTCTGGCGTAATGTGCAGTTCACTGTGGACAAAGACGTGGTTCGGACAGATAGGAACAACCAGTTCTTCCGAGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS TCA 72 bp GTTCTGCATCAAACCCACGAAGCACCAGAAGGTGTCTaGTTCATCCAAGACTTCAGCCAGGATAGGCGCCAC +
Preference number: 6 (lower is better)
Translates to: VLHQTHEAPEGV*FIQDFSQDRRH
Trigger: GTGGCGCCTATCCTGGCTGAAGTCTTGGATGAATCAGACACCTTCTGGTGCTTCGTGGGTTTGATGCAGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS GCA 72 bp ATGGAGAACTGCATACATGTCCTCTCATCCGTGACCTaGTGGTCCCTGAGGTGTGTCTCCGTGCAGAATTTC +
Preference number: 6 (lower is better)
Translates to: MENCIHVLSSVT*WSLRCVSVQNF
Trigger: GAAATTCTGCACGGAGACACACCTCAGGGACCAGCAGGTCACGGATGAGAGGACATGTATGCAGTTCTCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036113.4
CDS GCA 72 bp CTATCTGTCCGAACCACGTCTTTGTCCACAGTGAACTaGACATTACGCCAGAAGGCTCTCTGCTCCTCTGGA +
Preference number: 6 (lower is better)
Translates to: LSVRTTSLSTVN*TLRQKALCSSG
Trigger: TCCAGAGGAGCAGAGAGCCTTCTGGCGTAATGTGCAGTTCACTGTGGACAAAGACGTGGTTCGGACAGATAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 72 bp CTCTCCACGTTTGGATTGTCCTCCCCTCGGAAGAACTaGTTGTTCCTATCTGTCCGAACCACGTCTTTGTCC +
Preference number: 6 (lower is better)
Translates to: LSTFGLSSPRKN*LFLSVRTTSLS
Trigger: GGACAAAGACGTGGTTCGGACAGATAGGAACAACCAGTTCTTCCGAGGGGAGGACAATCCAAACGTGGAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CAA 90 bp CTCATGCTCTCCACGTTTGGATTGTCCTCCCCTCGGAAGAACTGGTaGTTCCTATCTGTCCGAACCACGTCTTTGTCCACAGTGAACTGC +
Preference number: 6 (lower is better)
Translates to: LMLSTFGLSSPRKNW*FLSVRTTSLSTVNC
Trigger: GCAGTTCACTGTGGACAAAGACGTGGTTCGGACAGATAGGAACAACCAGTTCTTCCGAGGGGAGGACAATCCAAACGTGGAGAGCATGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS TCA 72 bp TGTTCCTATCTGTCCGAACCACGTCTTTGTCCACAGTaGACTGCACATTACGCCAGAAGGCTCTCTGCTCCT +
Preference number: 6 (lower is better)
Translates to: CSYLSEPRLCPQ*TAHYARRLSAP
Trigger: AGGAGCAGAGAGCCTTCTGGCGTAATGTGCAGTTCACTGTGGACAAAGACGTGGTTCGGACAGATAGGAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CAA 72 bp TCCACGTTTGGATTGTCCTCCCCTCGGAAGAACTGGTaGTTCCTATCTGTCCGAACCACGTCTTTGTCCACA +
Preference number: 6 (lower is better)
Translates to: STFGLSSPRKNW*FLSVRTTSLST
Trigger: TGTGGACAAAGACGTGGTTCGGACAGATAGGAACAACCAGTTCTTCCGAGGGGAGGACAATCCAAACGTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CAA 72 bp CATAGTTCAACAGGATCCTCCTCATGCTCTCCACGTTaGGATTGTCCTCCCCTCGGAAGAACTGGTTGTTCC +
Preference number: 6 (lower is better)
Translates to: HSSTGSSSCSPR*DCPPLGRTGCS
Trigger: GGAACAACCAGTTCTTCCGAGGGGAGGACAATCCAAACGTGGAGAGCATGAGGAGGATCCTGTTGAACTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CCA 72 bp ATAGTTCAACAGGATCCTCCTCATGCTCTCCACGTTTaGATTGTCCTCCCCTCGGAAGAACTGGTTGTTCCT +
Preference number: 6 (lower is better)
Translates to: IVQQDPPHALHV*IVLPSEELVVP
Trigger: AGGAACAACCAGTTCTTCCGAGGGGAGGACAATCCAAACGTGGAGAGCATGAGGAGGATCCTGTTGAACTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CAA 72 bp TTCAACAGGATCCTCCTCATGCTCTCCACGTTTGGATaGTCCTCCCCTCGGAAGAACTGGTTGTTCCTATCT +
Preference number: 6 (lower is better)
Translates to: FNRILLMLSTFG*SSPRKNWLFLS
Trigger: AGATAGGAACAACCAGTTCTTCCGAGGGGAGGACAATCCAAACGTGGAGAGCATGAGGAGGATCCTGTTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2
CDS CAA 72 bp AAGAACTGGTTGTTCCTATCTGTCCGAACCACGTCTTaGTCCACAGTGAACTGCACATTACGCCAGAAGGCT +
Preference number: 6 (lower is better)
Translates to: KNWLFLSVRTTS*STVNCTLRQKA
Trigger: AGCCTTCTGGCGTAATGTGCAGTTCACTGTGGACAAAGACGTGGTTCGGACAGATAGGAACAACCAGTTCTT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036113.4
ENSMUST00000207655.2