Pregenerated sensors for TAX1BP3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040158Ensembl transcript IDs: ENSMUST00000040687.12, ENSMUST00000108477.2
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTACTTGGCACTTCCAAGCTTTGGCAGCTCTCAGAGGTGTTTCCTaGCTGCCCAGCCCATGCTGTGGCAGAACCCATAGGAGGTCTCTG | + |
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Preference number: 1 (lower is better) Translates to: PTWHFQALAALRGVS*LPSPCCGRTHRRSL Trigger: CAGAGACCTCCTATGGGTTCTGCCACAGCATGGGCTGGGCAGTCAGGAAACACCTCTGAGAGCTGCCAAAGCTTGGAAGTGCCAAGTAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR CCA 90 bp | CCTGACTGCCCAGCCCATGCTGTGGCAGAACCCATAGGAGGTCTCTaGCTGGGCCTACTATGGTTACTGAAGACTGGAAACTACTCCAGG | + |
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Preference number: 1 (lower is better) Translates to: PDCPAHAVAEPIGGL*LGLLWLLKTGNYSR Trigger: CCTGGAGTAGTTTCCAGTCTTCAGTAACCATAGTAGGCCCAGCCAGAGACCTCCTATGGGTTCTGCCACAGCATGGGCTGGGCAGTCAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR GCA 90 bp | AAAGCTAGACCCACAGGTGCAGAGAAAAATGGCAATCCTGAGAGCTaGCTTGAAATGTCAGTCTTGAAACTTGTGGGGAGGCCAGCACCC | + |
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Preference number: 1 (lower is better) Translates to: KARPTGAEKNGNPES*LEMSVLKLVGRPAP Trigger: GGGTGCTGGCCTCCCCACAAGTTTCAAGACTGACATTTCAAGGCAGCTCTCAGGATTGCCATTTTTCTCTGCACCTGTGGGTCTAGCTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR CCA 90 bp | ACCCATAGGAGGTCTCTGGCTGGGCCTACTATGGTTACTGAAGACTaGAAACTACTCCAGGCCTTATTCCCAATCCTCAGTATCCCAGGA | + |
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Preference number: 1 (lower is better) Translates to: THRRSLAGPTMVTED*KLLQALFPILSIPG Trigger: TCCTGGGATACTGAGGATTGGGAATAAGGCCTGGAGTAGTTTCCAGTCTTCAGTAACCATAGTAGGCCCAGCCAGAGACCTCCTATGGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR CCA 90 bp | GAACATGGGATACCATCATACTGCCCCATTTCCATAGTAACCAACTaGCTTGGTCACATGCTACAAGTTGCTGCTTCCAGGTGTGTGAAT | + |
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Preference number: 1 (lower is better) Translates to: EHGIPSYCPISIVTN*LGHMLQVAASRCVN Trigger: ATTCACACACCTGGAAGCAGCAACTTGTAGCATGTGACCAAGCCAGTTGGTTACTATGGAAATGGGGCAGTATGATGGTATCCCATGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR CCA 90 bp | TGGGATACCATCATACTGCCCCATTTCCATAGTAACCAACTGGCTTaGTCACATGCTACAAGTTGCTGCTTCCAGGTGTGTGAATTAGTA | + |
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Preference number: 1 (lower is better) Translates to: WDTIILPHFHSNQLA*SHATSCCFQVCELV Trigger: TACTAATTCACACACCTGGAAGCAGCAACTTGTAGCATGTGACCAAGCCAGTTGGTTACTATGGAAATGGGGCAGTATGATGGTATCCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR CAA 90 bp | GTCCCAGGGCCTCGGGCTGGGAGGTTGAGGGATAAGAAGGTTGGCTaGGACCTTTGGGATCAGCTGTTAGCCCTCAAAGCTGGGGCCCAG | + |
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Preference number: 2 (lower is better) Translates to: VPGPRAGRLRDKKVG*DLWDQLLALKAGAQ Trigger: CTGGGCCCCAGCTTTGAGGGCTAACAGCTGATCCCAAAGGTCCAAGCCAACCTTCTTATCCCTCAACCTCCCAGCCCGAGGCCCTGGGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR CCA 90 bp | GCCCTCTTCATCCAGGTGGGCTTCATACTGTCTCTGGCATATGTGGGTCCAGCCCCCAGGAGAAAGAGCTaGTCCCAGGGCCTCGGGCTG | + |
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Preference number: 2 (lower is better) Translates to: ALFIQVGFILSLAYVGPAPRRKS*SQGLGL Trigger: CAGCCCGAGGCCCTGGGACCAGCTCTTTCTCCTGGG...GGCTGGACCCACATATGCCAGAGACAGTATGAAGCCCACCTGGATGAAGAGGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR TCA 90 bp | TTCATCCAGGTGGGCTTCATACTGTCTCTGGCATATGTGGGTCCAGCCCCAGGCCTCAGAGGTGTTTCCTaGCTGCCCAGCCCATGCTGT | + |
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Preference number: 2 (lower is better) Translates to: FIQVGFILSLAYVGPAPGLRGVS*LPSPCC Trigger: ACAGCATGGGCTGGGCAGTCAGGAAACACCTCTGAG...GCCTGGGGCTGGACCCACATATGCCAGAGACAGTATGAAGCCCACCTGGATGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR GCA 90 bp | TTCATCCAGGTGGGCTTCATACTGTCTCTGGCATATGTGGGTCCAGCCCCAGGCGAGGTGTTTCCTGACTaGCCAGCCCATGCTGTGGCA | + |
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Preference number: 2 (lower is better) Translates to: FIQVGFILSLAYVGPAPGEVFPD*PAHAVA Trigger: TGCCACAGCATGGGCTGGGCAGTCAGGAAACACCTC...GCCTGGGGCTGGACCCACATATGCCAGAGACAGTATGAAGCCCACCTGGATGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR CCA 90 bp | GGGAATGAAGGGAGTGGGAGCCTGCCCTCTTCATCCAGGTGGGCTTCATACTGTGTTAGCCCTCAAAGCTaGGGCCCAGCACACAGCAGA | + |
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Preference number: 2 (lower is better) Translates to: GNEGSGSLPSSSRWASYCVSPQS*GPAHSR Trigger: TCTGCTGTGTGCTGGGCCCCAGCTTTGAGGGCTAAC...ACAGTATGAAGCCCACCTGGATGAAGAGGGCAGGCTCCCACTCCCTTCATTCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR CAA 90 bp | GTATCCCAGGAGAAAGAGCTGGTCCCAGGGCCTCGGGCTGGGAGGTaGAGGGATAAGAAGGTTGGCTTGGACCTTTGGGATCAGCTGTTA | + |
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Preference number: 2 (lower is better) Translates to: VSQEKELVPGPRAGR*RDKKVGLDLWDQLL Trigger: TAACAGCTGATCCCAAAGGTCCAAGCCAACCTTCTTATCCCTCAACCTCCCAGCCCGAGGCCCTGGGACCAGCTCTTTCTCCTGGGATAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR TCA 90 bp | GGGAATGAAGGGAGTGGGAGCCTGCCCTCTTCATCCAGGTGGGCTTCATACTGTCATAGGGAGAGGCACTaGGAAGATGACAGGGCAGGA | + |
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Preference number: 2 (lower is better) Translates to: GNEGSGSLPSSSRWASYCHRERH*EDDRAG Trigger: TCCTGCCCTGTCATCTTCTCAGTGCCTCTCCCTATG...ACAGTATGAAGCCCACCTGGATGAAGAGGGCAGGCTCCCACTCCCTTCATTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR CCA 90 bp | GCCCTCTTCATCCAGGTGGGCTTCATACTGTCTCTGGCATATGTGGGTCCAGCCCCCATAGGAGGTCTCTaGCTGGGCCTACTATGGTTA | + |
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Preference number: 2 (lower is better) Translates to: ALFIQVGFILSLAYVGPAPIGGL*LGLLWL Trigger: TAACCATAGTAGGCCCAGCCAGAGACCTCCTATGGG...GGCTGGACCCACATATGCCAGAGACAGTATGAAGCCCACCTGGATGAAGAGGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR TCA 90 bp | ACTGTCTCTGGCATATGTGGGTCCAGCCCCAGGCTGGGCACCATGATGAGGGAAGCCTACTATGGTTACTaGAGACTGGAAACTACTCCA | + |
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Preference number: 2 (lower is better) Translates to: TVSGICGSSPRLGTMMREAYYGY*RLETTP Trigger: TGGAGTAGTTTCCAGTCTTCAGTAACCATAGTAGGC...TTCCCTCATCATGGTGCCCAGCCTGGGGCTGGACCCACATATGCCAGAGACAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR CCA 90 bp | GGGAGGCCAGCACCCATTAGGGGAATGAAGGGAGTGGGAGCCTGCCCTCTTCATGATACAGACAGAGCATaGATGTGTTCTCACTGTACA | + |
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Preference number: 2 (lower is better) Translates to: GRPAPIRGMKGVGACPLHDTDRA*MCSHCT Trigger: TGTACAGTGAGAACACATCCATGCTCTGTCTGTATC...ATGAAGAGGGCAGGCTCCCACTCCCTTCATTCCCCTAATGGGTGCTGGCCTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR CCA 90 bp | GGGAATGAAGGGAGTGGGAGCCTGCCCTCTTCATCCAGGTGGGCTTCATACTGTGAAAAGGACCCTACTTaGCACTTCCAAGCTTTGGCA | + |
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Preference number: 2 (lower is better) Translates to: GNEGSGSLPSSSRWASYCEKDPT*HFQALA Trigger: TGCCAAAGCTTGGAAGTGCCAAGTAGGGTCCTTTTC...ACAGTATGAAGCCCACCTGGATGAAGAGGGCAGGCTCCCACTCCCTTCATTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR CCA 90 bp | CCTCTTCATCCAGGTGGGCTTCATACTGTCTCTGGCATATGTGGGTCCAGCCCCGAAAAGGACCCTACTTaGCACTTCCAAGCTTTGGCA | + |
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Preference number: 2 (lower is better) Translates to: PLHPGGLHTVSGICGSSPEKDPT*HFQALA Trigger: TGCCAAAGCTTGGAAGTGCCAAGTAGGGTCCTTTTC...GGGGCTGGACCCACATATGCCAGAGACAGTATGAAGCCCACCTGGATGAAGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR TCA 90 bp | ATAGTAACCAACTGGCTTGGTCACATGCTACAAGTTGCTGCTTCCAGGTGTGTGCTCAGAGGTGTTTCCTaGCTGCCCAGCCCATGCTGT | + |
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Preference number: 2 (lower is better) Translates to: IVTNWLGHMLQVAASRCVLRGVS*LPSPCC Trigger: ACAGCATGGGCTGGGCAGTCAGGAAACACCTCTGAG...CACACACCTGGAAGCAGCAACTTGTAGCATGTGACCAAGCCAGTTGGTTACTAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR GCA 90 bp | AGTAACCAACTGGCTTGGTCACATGCTACAAGTTGCTGCTTCCAGGTGTGTGAAGAGGTGTTTCCTGACTaGCCAGCCCATGCTGTGGCA | + |
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Preference number: 2 (lower is better) Translates to: SNQLAWSHATSCCFQVCEEVFPD*PAHAVA Trigger: TGCCACAGCATGGGCTGGGCAGTCAGGAAACACCTC...TTCACACACCTGGAAGCAGCAACTTGTAGCATGTGACCAAGCCAGTTGGTTACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR CCA 90 bp | GGAGTGGGAGCCTGCCCTCTTCATCCAGGTGGGCTTCATACTGTCTCTGGCATAATAAGAAGGTTGGCTTaGACCTTTGGGATCAGCTGT | + |
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Preference number: 2 (lower is better) Translates to: GVGACPLHPGGLHTVSGIIRRLA*TFGISC Trigger: ACAGCTGATCCCAAAGGTCCAAGCCAACCTTCTTAT...TATGCCAGAGACAGTATGAAGCCCACCTGGATGAAGAGGGCAGGCTCCCACTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR TCA 90 bp | CTCTTCATCCAGGTGGGCTTCATACTGTCTCTGGCATATGTGGGTCCAGCCCCAGCCTACTATGGTTACTaGAGACTGGAAACTACTCCA | + |
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Preference number: 2 (lower is better) Translates to: LFIQVGFILSLAYVGPAPAYYGY*RLETTP Trigger: TGGAGTAGTTTCCAGTCTTCAGTAACCATAGTAGGC...TGGGGCTGGACCCACATATGCCAGAGACAGTATGAAGCCCACCTGGATGAAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR CCA 90 bp | GGGCTTTACTCCATAGCAGCAGGGGACAAGTTAGCCATCCTTAAAACATACCACGCTTCATACTGTCTCTaGCATATGTGGGTCCAGCCC | + |
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Preference number: 2 (lower is better) Translates to: GLYSIAAGDKLAILKTYHASYCL*HMWVQP Trigger: GGGCTGGACCCACATATGCCAGAGACAGTATGAAGC...GTGGTATGTTTTAAGGATGGCTAACTTGTCCCCTGCTGCTATGGAGTAAAGCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040687.12 |
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| 3UTR-3UTR CCA 90 bp | AGTAACCAACTGGCTTGGTCACATGCTACAAGTTGCTGCTTCCAGGTGTGTGAAGCTTCATACTGTCTCTaGCATATGTGGGTCCAGCCC | + |
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Preference number: 2 (lower is better) Translates to: SNQLAWSHATSCCFQVCEASYCL*HMWVQP Trigger: GGGCTGGACCCACATATGCCAGAGACAGTATGAAGC...TTCACACACCTGGAAGCAGCAACTTGTAGCATGTGACCAAGCCAGTTGGTTACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR TCA 90 bp | GCAGGAGTTGGGCTTTACTCCATAGCAGCAGGGGACAAGTTAGCCATCCTTAAATTGAAATGTCAGTCTTaGAACTTGTGGGGAGGCCAG | + |
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Preference number: 2 (lower is better) Translates to: AGVGLYSIAAGDKLAILKLKCQS*NLWGGQ Trigger: CTGGCCTCCCCACAAGTTTCAAGACTGACATTTCAA...TTTAAGGATGGCTAACTTGTCCCCTGCTGCTATGGAGTAAAGCCCAACTCCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040687.12 |
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| 3UTR-3UTR CCA 90 bp | AGGGATAAGAAGGTTGGCTTGGACCTTTGGGATCAGCTGTTAGCCCTCAAAGCTGATACAGACAGAGCATaGATGTGTTCTCACTGTACA | + |
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Preference number: 2 (lower is better) Translates to: RDKKVGLDLWDQLLALKADTDRA*MCSHCT Trigger: TGTACAGTGAGAACACATCCATGCTCTGTCTGTATC...AGCTTTGAGGGCTAACAGCTGATCCCAAAGGTCCAAGCCAACCTTCTTATCCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR CCA 90 bp | AAAAGGACCCTACTTGGCACTTCCAAGCTTTGGCAGCTCTCAGAGGTGTTTCCTATGGTTACTGAAGACTaGAAACTACTCCAGGCCTTA | + |
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Preference number: 2 (lower is better) Translates to: KRTLLGTSKLWQLSEVFPMVTED*KLLQAL Trigger: TAAGGCCTGGAGTAGTTTCCAGTCTTCAGTAACCAT...AGGAAACACCTCTGAGAGCTGCCAAAGCTTGGAAGTGCCAAGTAGGGTCCTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR CCA 90 bp | GGGCTTTACTCCATAGCAGCAGGGGACAAGTTAGCCATCCTTAAAACATACCACATGGTTACTGAAGACTaGAAACTACTCCAGGCCTTA | + |
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Preference number: 2 (lower is better) Translates to: GLYSIAAGDKLAILKTYHMVTED*KLLQAL Trigger: TAAGGCCTGGAGTAGTTTCCAGTCTTCAGTAACCAT...GTGGTATGTTTTAAGGATGGCTAACTTGTCCCCTGCTGCTATGGAGTAAAGCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040687.12 |
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| 3UTR-3UTR CAA 90 bp | AGGGAGTGGGAGCCTGCCCTCTTCATCCAGGTGGGCTTCATACTGTCTCTGGCACCTCGGGCTGGGAGGTaGAGGGATAAGAAGGTTGGC | + |
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Preference number: 3 (lower is better) Translates to: REWEPALFIQVGFILSLAPRAGR*RDKKVG Trigger: GCCAACCTTCTTATCCCTCAACCTCCCAGCCCGAGG...TGCCAGAGACAGTATGAAGCCCACCTGGATGAAGAGGGCAGGCTCCCACTCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR CCA 72 bp | CTGCCCTCTTCATCCAGGTGGGCTTCATACTGTCTCTaGCATATGTGGGTCCAGCCCCAGGCTGGGCACCAT | + |
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Preference number: 3 (lower is better) Translates to: LPSSSRWASYCL*HMWVQPQAGHH Trigger: ATGGTGCCCAGCCTGGGGCTGGACCCACATATGCCAGAGACAGTATGAAGCCCACCTGGATGAAGAGGGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR CAA 90 bp | CCTCTTCATCCAGGTGGGCTTCATACTGTCTCTGGCATATGTGGGTCCAGCCCCCCTCGGGCTGGGAGGTaGAGGGATAAGAAGGTTGGC | + |
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Preference number: 3 (lower is better) Translates to: PLHPGGLHTVSGICGSSPPRAGR*RDKKVG Trigger: GCCAACCTTCTTATCCCTCAACCTCCCAGCCCGAGG...GGGGCTGGACCCACATATGCCAGAGACAGTATGAAGCCCACCTGGATGAAGAGG 59% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR CAA 90 bp | CTTGTGGGGAGGCCAGCACCCATTAGGGGAATGAAGGGAGTGGGAGCCTGCCCTAGAAAAGGACCCTACTaGGCACTTCCAAGCTTTGGC | + |
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Preference number: 3 (lower is better) Translates to: LVGRPAPIRGMKGVGACPRKGPY*ALPSFG Trigger: GCCAAAGCTTGGAAGTGCCAAGTAGGGTCCTTTTCT...AGGGCAGGCTCCCACTCCCTTCATTCCCCTAATGGGTGCTGGCCTCCCCACAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR CCA 72 bp | TCATCCAGGTGGGCTTCATACTGTCTCTGGCATATGTaGGTCCAGCCCCAGGCTGGGCACCATGATGAGGGA | + |
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Preference number: 3 (lower is better) Translates to: SSRWASYCLWHM*VQPQAGHHDEG Trigger: TCCCTCATCATGGTGCCCAGCCTGGGGCTGGACCCACATATGCCAGAGACAGTATGAAGCCCACCTGGATGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR TCA 72 bp | CACTTCCAAGCTTTGGCAGCTCTCAGAGGTGTTTCCTaGCTGCCCAGCCCATGCTGTGGCAGAACCCATAGG | + |
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Preference number: 3 (lower is better) Translates to: HFQALAALRGVS*LPSPCCGRTHR Trigger: CCTATGGGTTCTGCCACAGCATGGGCTGGGCAGTCAGGAAACACCTCTGAGAGCTGCCAAAGCTTGGAAGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR GCA 72 bp | CCAGCACCCATTAGGGGAATGAAGGGAGTGGGAGCCTaGCCTCTTCATCCAGGTGGGCTTCATACTGTCTCT | + |
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Preference number: 3 (lower is better) Translates to: PAPIRGMKGVGA*PLHPGGLHTVS Trigger: AGAGACAGTATGAAGCCCACCTGGATGAAGAGGGCAGGCTCCCACTCCCTTCATTCCCCTAATGGGTGCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR CCA 72 bp | GGGAGGTTGAGGGATAAGAAGGTTGGCTTGGACCTTTaGGATCAGCTGTTAGCCCTCAAAGCTGGGGCCCAG | + |
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Preference number: 3 (lower is better) Translates to: GRLRDKKVGLDL*DQLLALKAGAQ Trigger: CTGGGCCCCAGCTTTGAGGGCTAACAGCTGATCCCAAAGGTCCAAGCCAACCTTCTTATCCCTCAACCTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR CAA 90 bp | GGGAATGAAGGGAGTGGGAGCCTGCCCTCTTCATCCAGGTGGGCTTCATACTGTTGGCACTTCCAAGCTTaGGCAGCTCTCAGAGGTGTT | + |
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Preference number: 3 (lower is better) Translates to: GNEGSGSLPSSSRWASYCWHFQA*AALRGV Trigger: AACACCTCTGAGAGCTGCCAAAGCTTGGAAGTGCCA...ACAGTATGAAGCCCACCTGGATGAAGAGGGCAGGCTCCCACTCCCTTCATTCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR CCA 72 bp | CCAGCCCATGCTGTGGCAGAACCCATAGGAGGTCTCTaGCTGGGCCTACTATGGTTACTGAAGACTGGAAAC | + |
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Preference number: 3 (lower is better) Translates to: PAHAVAEPIGGL*LGLLWLLKTGN Trigger: GTTTCCAGTCTTCAGTAACCATAGTAGGCCCAGCCAGAGACCTCCTATGGGTTCTGCCACAGCATGGGCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR CCA 72 bp | AATGAAGGGAGTGGGAGCCTGCCCTCTTCATCCAGGTaGGCTTCATACTGTCTCTGGCATATGTGGGTCCAG | + |
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Preference number: 3 (lower is better) Translates to: NEGSGSLPSSSR*ASYCLWHMWVQ Trigger: CTGGACCCACATATGCCAGAGACAGTATGAAGCCCACCTGGATGAAGAGGGCAGGCTCCCACTCCCTTCATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR CAA 90 bp | ATAGTAACCAACTGGCTTGGTCACATGCTACAAGTTGCTGCTTCCAGGTGTGTGGGTTGGCTTGGACCTTaGGGATCAGCTGTTAGCCCT | + |
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Preference number: 3 (lower is better) Translates to: IVTNWLGHMLQVAASRCVGWLGP*GSAVSP Trigger: AGGGCTAACAGCTGATCCCAAAGGTCCAAGCCAACC...CACACACCTGGAAGCAGCAACTTGTAGCATGTGACCAAGCCAGTTGGTTACTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR CCA 72 bp | GCAGAACCCATAGGAGGTCTCTGGCTGGGCCTACTATaGTTACTGAAGACTGGAAACTACTCCAGGCCTTAT | + |
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Preference number: 3 (lower is better) Translates to: AEPIGGLWLGLL*LLKTGNYSRPY Trigger: ATAAGGCCTGGAGTAGTTTCCAGTCTTCAGTAACCATAGTAGGCCCAGCCAGAGACCTCCTATGGGTTCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR CCA 72 bp | AGGTCTCTGGCTGGGCCTACTATGGTTACTGAAGACTaGAAACTACTCCAGGCCTTATTCCCAATCCTCAGT | + |
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Preference number: 3 (lower is better) Translates to: RSLAGPTMVTED*KLLQALFPILS Trigger: ACTGAGGATTGGGAATAAGGCCTGGAGTAGTTTCCAGTCTTCAGTAACCATAGTAGGCCCAGCCAGAGACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR-3UTR CAA 90 bp | ATAGTAACCAACTGGCTTGGTCACATGCTACAAGTTGCTGCTTCCAGGTGTGTGCTTGAAATGTCAGTCTaGAAACTTGTGGGGAGGCCA | + |
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Preference number: 3 (lower is better) Translates to: IVTNWLGHMLQVAASRCVLEMSV*KLVGRP Trigger: TGGCCTCCCCACAAGTTTCAAGACTGACATTTCAAG...CACACACCTGGAAGCAGCAACTTGTAGCATGTGACCAAGCCAGTTGGTTACTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR CCA 72 bp | ACACAGCAGAAGCCAGAACTAGATACAGACAGAGCATaGATGTGTTCTCACTGTACAAAAAGGTCAGTGGGC | + |
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Preference number: 3 (lower is better) Translates to: TQQKPELDTDRA*MCSHCTKRSVG Trigger: GCCCACTGACCTTTTTGTACAGTGAGAACACATCCATGCTCTGTCTGTATCTAGTTCTGGCTTCTGCTGTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR CCA 72 bp | ATCATACTGCCCCATTTCCATAGTAACCAACTGGCTTaGTCACATGCTACAAGTTGCTGCTTCCAGGTGTGT | + |
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Preference number: 3 (lower is better) Translates to: IILPHFHSNQLA*SHATSCCFQVC Trigger: ACACACCTGGAAGCAGCAACTTGTAGCATGTGACCAAGCCAGTTGGTTACTATGGAAATGGGGCAGTATGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR CCA 72 bp | ATACCATCATACTGCCCCATTTCCATAGTAACCAACTaGCTTGGTCACATGCTACAAGTTGCTGCTTCCAGG | + |
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Preference number: 3 (lower is better) Translates to: IPSYCPISIVTN*LGHMLQVAASR Trigger: CCTGGAAGCAGCAACTTGTAGCATGTGACCAAGCCAGTTGGTTACTATGGAAATGGGGCAGTATGATGGTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR TCA 72 bp | TTGGTCACATGCTACAAGTTGCTGCTTCCAGGTGTGTaGATTAGTAAGCTAAATTCAAACAGTAAGATAAAA | + |
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Preference number: 3 (lower is better) Translates to: LVTCYKLLLPGV*ISKLNSNSKIK Trigger: TTTTATCTTACTGTTTGAATTTAGCTTACTAATTCACACACCTGGAAGCAGCAACTTGTAGCATGTGACCAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| CDS-3UTR TCA 90 bp | TCCCAATCCTCAGTATCCCAGGAGAAAGAGCTGGTCCCAGGGCCTCGGGCTGGGTTTGCACTACGGCGGTaGCAGGCTGGCCCGGGGTGT | + |
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Preference number: 4 (lower is better) Translates to: SQSSVSQEKELVPGPRAGFALRR*QAGPGC Trigger: ACACCCCGGGCCAGCCTGTCACCGCCGTAGTGCAAA...CCCAGCCCGAGGCCCTGGGACCAGCTCTTTCTCCTGGGATACTGAGGATTGGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| CDS-3UTR TCA 90 bp | GGGAGGCCAGCACCCATTAGGGGAATGAAGGGAGTGGGAGCCTGCCCTCTTCATCCTCCGAGCGCTTGGTaGGCCGCTTCCGAGCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: GRPAPIRGMKGVGACPLHPPSAW*AASEPG Trigger: ACCAGGCTCGGAAGCGGCTCACCAAGCGCTCGGAGG...ATGAAGAGGGCAGGCTCCCACTCCCTTCATTCCCCTAATGGGTGCTGGCCTCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| CDS-3UTR TCA 90 bp | CCAGGGCCTCGGGCTGGGAGGTTGAGGGATAAGAAGGTTGGCTTGGACCTTTGGCCTCCGAGCGCTTGGTaGGCCGCTTCCGAGCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: PGPRAGRLRDKKVGLDLWPPSAW*AASEPG Trigger: ACCAGGCTCGGAAGCGGCTCACCAAGCGCTCGGAGG...CCAAAGGTCCAAGCCAACCTTCTTATCCCTCAACCTCCCAGCCCGAGGCCCTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| CDS-3UTR TCA 90 bp | GGGAGGCCAGCACCCATTAGGGGAATGAAGGGAGTGGGAGCCTGCCCTCTTCATTTTGCACTACGGCGGTaGCAGGCTGGCCCGGGGTGT | + |
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Preference number: 4 (lower is better) Translates to: GRPAPIRGMKGVGACPLHFALRR*QAGPGC Trigger: ACACCCCGGGCCAGCCTGTCACCGCCGTAGTGCAAA...ATGAAGAGGGCAGGCTCCCACTCCCTTCATTCCCCTAATGGGTGCTGGCCTCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| CDS-3UTR TCA 90 bp | TGGCATATGTGGGTCCAGCCCCAGGCTGGGCACCATGATGAGGGAAGCATAGGGTCCGAGAAGGGATTCTaGGACGGGTCCTGGTCGATC | + |
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Preference number: 4 (lower is better) Translates to: WHMWVQPQAGHHDEGSIGSEKGF*DGSWSI Trigger: GATCGACCAGGACCCGTCTCAGAATCCCTTCTCGGA...CCCTATGCTTCCCTCATCATGGTGCCCAGCCTGGGGCTGGACCCACATATGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| CDS-3UTR TCA 90 bp | AGGGAGTGGGAGCCTGCCCTCTTCATCCAGGTGGGCTTCATACTGTCTCTGGCAGAGCCTGGTCGTGAGTaGCCATGGTCATGTCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: REWEPALFIQVGFILSLAEPGRE*PWSCPS Trigger: GCTGGGACATGACCATGGTCACTCACGACCAGGCTC...TGCCAGAGACAGTATGAAGCCCACCTGGATGAAGAGGGCAGGCTCCCACTCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| CDS-3UTR TCA 90 bp | CCAGGGCCTCGGGCTGGGAGGTTGAGGGATAAGAAGGTTGGCTTGGACCTTTGGTTCCGAGCCTGGTCGTaGGTGACCATGGTCATGTCC | + |
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Preference number: 4 (lower is better) Translates to: PGPRAGRLRDKKVGLDLWFRAWS*VTMVMS Trigger: GGACATGACCATGGTCACTCACGACCAGGCTCGGAA...CCAAAGGTCCAAGCCAACCTTCTTATCCCTCAACCTCCCAGCCCGAGGCCCTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| CDS-3UTR TCA 90 bp | GGAGTGGGAGCCTGCCCTCTTCATCCAGGTGGGCTTCATACTGTCTCTGGCATATTCCGAGCCTGGTCGTaGGTGACCATGGTCATGTCC | + |
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Preference number: 4 (lower is better) Translates to: GVGACPLHPGGLHTVSGIFRAWS*VTMVMS Trigger: GGACATGACCATGGTCACTCACGACCAGGCTCGGAA...TATGCCAGAGACAGTATGAAGCCCACCTGGATGAAGAGGGCAGGCTCCCACTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| CDS-3UTR GCA 90 bp | TCCCAATCCTCAGTATCCCAGGAGAAAGAGCTGGTCCCAGGGCCTCGGGCTGGGATCTTGTCTCCAATCTaGAGCCCAGCAATTTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: SQSSVSQEKELVPGPRAGILSPI*SPAISA Trigger: TGCTGAAATTGCTGGGCTGCAGATTGGAGACAAGAT...CCCAGCCCGAGGCCCTGGGACCAGCTCTTTCTCCTGGGATACTGAGGATTGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040687.12 |
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| 3UTR CAA 72 bp | CCTCGGGCTGGGAGGTTGAGGGATAAGAAGGTTGGCTaGGACCTTTGGGATCAGCTGTTAGCCCTCAAAGCT | + |
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Preference number: 4 (lower is better) Translates to: PRAGRLRDKKVG*DLWDQLLALKA Trigger: AGCTTTGAGGGCTAACAGCTGATCCCAAAGGTCCAAGCCAACCTTCTTATCCCTCAACCTCCCAGCCCGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| CDS-3UTR TCA 90 bp | CCAGGGCCTCGGGCTGGGAGGTTGAGGGATAAGAAGGTTGGCTTGGACCTTTGGTCCCACCTCCAATACTaGAGCCCAAGATTAAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: PGPRAGRLRDKKVGLDLWSHLQY*SPRLSS Trigger: AGAACTTAATCTTGGGCTTCAGTATTGGAGGTGGGA...CCAAAGGTCCAAGCCAACCTTCTTATCCCTCAACCTCCCAGCCCGAGGCCCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| CDS-3UTR TCA 90 bp | TCATCCAGGTGGGCTTCATACTGTCTCTGGCATATGTGGGTCCAGCCCCAGGCTCCTCTGATACTCGTGTaGCGTAAATGCCCTTGTCTG | + |
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Preference number: 4 (lower is better) Translates to: SSRWASYCLWHMWVQPQAPLILV*RKCPCL Trigger: CAGACAAGGGCATTTACGTCACACGAGTATCAGAGG...AGCCTGGGGCTGGACCCACATATGCCAGAGACAGTATGAAGCCCACCTGGATGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040687.12 |
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| CDS-3UTR TCA 90 bp | AGGGATAAGAAGGTTGGCTTGGACCTTTGGGATCAGCTGTTAGCCCTCAAAGCTGAGCCTGGTCGTGAGTaGCCATGGTCATGTCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: RDKKVGLDLWDQLLALKAEPGRE*PWSCPS Trigger: GCTGGGACATGACCATGGTCACTCACGACCAGGCTC...AGCTTTGAGGGCTAACAGCTGATCCCAAAGGTCCAAGCCAACCTTCTTATCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| CDS-3UTR TCA 90 bp | ACTTCCAAGCTTTGGCAGCTCTCAGAGGTGTTTCCTGACTGCCCAGCCCATGCTAGCAGGACCTCCCTCTaGTACTCGTGTGACGTAAAT | + |
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Preference number: 4 (lower is better) Translates to: TSKLWQLSEVFPDCPAHASRTSL*YSCDVN Trigger: ATTTACGTCACACGAGTATCAGAGGGAGGTCCTGCT...AGCATGGGCTGGGCAGTCAGGAAACACCTCTGAGAGCTGCCAAAGCTTGGAAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040687.12 |
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| CDS-3UTR GCA 90 bp | GGAGTGGGAGCCTGCCCTCTTCATCCAGGTGGGCTTCATACTGTCTCTGGCATATCCCAGCCATTCACCTaGATGATCTTGTCTCCAATC | + |
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Preference number: 4 (lower is better) Translates to: GVGACPLHPGGLHTVSGISQPFT*MILSPI Trigger: GATTGGAGACAAGATCATGCAGGTGAATGGCTGGGA...TATGCCAGAGACAGTATGAAGCCCACCTGGATGAAGAGGGCAGGCTCCCACTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040687.12 |
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| CDS-3UTR TCA 90 bp | GGAGTGGGAGCCTGCCCTCTTCATCCAGGTGGGCTTCATACTGTCTCTGGCATATCCCACCTCCAATACTaGAGCCCAAGATTAAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: GVGACPLHPGGLHTVSGISHLQY*SPRLSS Trigger: AGAACTTAATCTTGGGCTTCAGTATTGGAGGTGGGA...TATGCCAGAGACAGTATGAAGCCCACCTGGATGAAGAGGGCAGGCTCCCACTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| 3UTR CAA 72 bp | AATGGCAATCCTGAGAGCTGCCTTGAAATGTCAGTCTaGAAACTTGTGGGGAGGCCAGCACCCATTAGGGGA | + |
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Preference number: 4 (lower is better) Translates to: NGNPESCLEMSV*KLVGRPAPIRG Trigger: TCCCCTAATGGGTGCTGGCCTCCCCACAAGTTTCAAGACTGACATTTCAAGGCAGCTCTCAGGATTGCCATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| CDS-3UTR TCA 90 bp | AAAAGGACCCTACTTGGCACTTCCAAGCTTTGGCAGCTCTCAGAGGTGTTTCCTAGCCATTCACCTGCATaGTCTTGTCTCCAATCTGCA | + |
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Preference number: 4 (lower is better) Translates to: KRTLLGTSKLWQLSEVFPSHSPA*SCLQSA Trigger: TGCAGATTGGAGACAAGATCATGCAGGTGAATGGCT...AGGAAACACCTCTGAGAGCTGCCAAAGCTTGGAAGTGCCAAGTAGGGTCCTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040687.12 |
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| CDS-3UTR CAA 90 bp | AGGGAGTGGGAGCCTGCCCTCTTCATCCAGGTGGGCTTCATACTGTCTCTGGCAACCTCCTCCGAGCGCTaGGTGAGCCGCTTCCGAGCC | + |
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Preference number: 5 (lower is better) Translates to: REWEPALFIQVGFILSLATSSER*VSRFRA Trigger: GGCTCGGAAGCGGCTCACCAAGCGCTCGGAGGAGGT...TGCCAGAGACAGTATGAAGCCCACCTGGATGAAGAGGGCAGGCTCCCACTCCCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| CDS-3UTR CAA 90 bp | TTCATCCAGGTGGGCTTCATACTGTCTCTGGCATATGTGGGTCCAGCCCCAGGCACCTCCTCCGAGCGCTaGGTGAGCCGCTTCCGAGCC | + |
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Preference number: 5 (lower is better) Translates to: FIQVGFILSLAYVGPAPGTSSER*VSRFRA Trigger: GGCTCGGAAGCGGCTCACCAAGCGCTCGGAGGAGGT...GCCTGGGGCTGGACCCACATATGCCAGAGACAGTATGAAGCCCACCTGGATGAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| CDS TCA 90 bp | ACCACCTCCTCCGAGCGCTTGGTGAGCCGCTTCCGAGCCTGGTCGTaGGTGACCATGGTCATGTCCCAGCCATTCACCTGCATGATCTTG | + |
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Preference number: 5 (lower is better) Translates to: TTSSERLVSRFRAWS*VTMVMSQPFTCMIL Trigger: CAAGATCATGCAGGTGAATGGCTGGGACATGACCATGGTCACTCACGACCAGGCTCGGAAGCGGCTCACCAAGCGCTCGGAGGAGGTGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040687.12 |
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| CDS TCA 90 bp | ACCACCTCCTCCGAGCGCTTGGTGAGCCGCTTCCGAGCCTGGTCGTaGGTGACCATGGTCATGTCCCAGCCATTCACCTTGTCTGTTTTA | + |
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Preference number: 5 (lower is better) Translates to: TTSSERLVSRFRAWS*VTMVMSQPFTLSVL Trigger: TAAAACAGACAAGGTGAATGGCTGGGACATGACCATGGTCACTCACGACCAGGCTCGGAAGCGGCTCACCAAGCGCTCGGAGGAGGTGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108477.2 |
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| CDS TCA 90 bp | CTTGTCTCCAATCTGCAGCCCAGCAATTTCAGCAGGACCTCCCTCTaGTACTCGTGTGACGTAAATGCCCTTGTCTGTTTTATCTTCCGA | + |
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Preference number: 5 (lower is better) Translates to: LVSNLQPSNFSRTSL*YSCDVNALVCFIFR Trigger: TCGGAAGATAAAACAGACAAGGGCATTTACGTCACACGAGTATCAGAGGGAGGTCCTGCTGAAATTGCTGGGCTGCAGATTGGAGACAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040687.12 |
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| CDS TCA 90 bp | AGAAGGGATTCTGAGACGGGTCCTGGTCGATCCCACCTCCAATACTaGAGCCCAAGATTAAGTTCTCACCTTGACGCAACTTATGAATTT | + |
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Preference number: 5 (lower is better) Translates to: RRDSETGPGRSHLQY*SPRLSSHLDATYEF Trigger: AAATTCATAAGTTGCGTCAAGGTGAGAACTTAATCTTGGGCTTCAGTATTGGAGGTGGGATCGACCAGGACCCGTCTCAGAATCCCTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| CDS GCA 72 bp | GACAGCATGGACTGCTGTACAGCCTTTTGTAGAGACTaGCGAGTCACCAGCAGGCGGACCACCTCCTCCGAG | + |
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Preference number: 6 (lower is better) Translates to: DSMDCCTAFCRD*RVTSRRTTSSE Trigger: CTCGGAGGAGGTGGTCCGCCTGCTGGTGACTCGGCAGTCTCTACAAAAGGCTGTACAGCAGTCCATGCTGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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| CDS GCA 72 bp | TCCCAGCCATTCACCTGCATGATCTTGTCTCCAATCTaGAGCCCAGCAATTTCAGCAGGACCTCCCTCTGAT | + |
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Preference number: 6 (lower is better) Translates to: SQPFTCMILSPI*SPAISAGPPSD Trigger: ATCAGAGGGAGGTCCTGCTGAAATTGCTGGGCTGCAGATTGGAGACAAGATCATGCAGGTGAATGGCTGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040687.12 |
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| CDS TCA 72 bp | TCTGAGACGGGTCCTGGTCGATCCCACCTCCAATACTaGAGCCCAAGATTAAGTTCTCACCTTGACGCAACT | + |
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Preference number: 6 (lower is better) Translates to: SETGPGRSHLQY*SPRLSSHLDAT Trigger: AGTTGCGTCAAGGTGAGAACTTAATCTTGGGCTTCAGTATTGGAGGTGGGATCGACCAGGACCCGTCTCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040687.12 ENSMUST00000108477.2 |
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