Pregenerated sensors for TATDN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050891Ensembl transcript IDs: ENSMUST00000110155.3, ENSMUST00000226707.2, ENSMUST00000226835.2, ENSMUST00000227540.2, ENSMUST00000238706.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCTGGTGTTTGCCAGAGCGTTAGAAAGGCTTCTGGTGTTCAGGGATaGTTCCCTTTTGTTCTTCCTCAGTGTGCGGAGATGCAGTACCCA | + |
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Preference number: 1 (lower is better) Translates to: AGVCQSVRKASGVQG*FPFVLPQCAEMQYP Trigger: TGGGTACTGCATCTCCGCACACTGAGGAAGAACAAAAGGGAACCATCCCTGAACACCAGAAGCCTTTCTAACGCTCTGGCAAACACCAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110155.3 |
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| 3UTR TCA 90 bp | TCGGTCACTCCTCAAAGGTGGATCGTGTTATTTAGACTTTACAGGTaGGGAAATGAGGTTGGAGAAGTTAGGTGTTTGGTTTCTGGTGCA | + |
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Preference number: 1 (lower is better) Translates to: SVTPQRWIVLFRLYR*GNEVGEVRCLVSGA Trigger: TGCACCAGAAACCAAACACCTAACTTCTCCAACCTCATTTCCTCACCTGTAAAGTCTAAATAACACGATCCACCTTTGAGGAGTGACCGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110155.3 |
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| 3UTR CCA 90 bp | TGGATAGCTCTCTCTATTACATCTTGTAAGTCATCTTCTGAATGCTaGGTTTTAGATTCACCCTCAGCTGCCCAGAGTCCTTTAAGATTT | + |
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Preference number: 1 (lower is better) Translates to: WIALSITSCKSSSEC*VLDSPSAAQSPLRF Trigger: AAATCTTAAAGGACTCTGGGCAGCTGAGGGTGAATCTAAAACCCAGCATTCAGAAGATGACTTACAAGATGTAATAGAGAGAGCTATCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226707.2 |
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| 3UTR-3UTR TCA 90 bp | GCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCGAAGGTCACTGAGCGATaGGACGGAGGACAGGCTCTC | + |
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Preference number: 2 (lower is better) Translates to: ALRLLGKRSTTELNPQPPKVTER*DGGQAL Trigger: GAGAGCCTGTCCTCCGTCTCATCGCTCAGTGACCTT...CGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000226835.2 |
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| 3UTR-3UTR TCA 90 bp | GCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCGGTGCTGGCTGACTTGTaGGGAGGTTTGAGGTTTAGT | + |
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Preference number: 2 (lower is better) Translates to: ALRLLGKRSTTELNPQPPVLADL*GGLRFS Trigger: ACTAAACCTCAAACCTCCTCACAAGTCAGCCAGCAC...CGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000226835.2 |
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| 3UTR-3UTR TCA 90 bp | TCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACAGCACAAGATAGCCTaGGGACAAACCGGATTGCTG | + |
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Preference number: 2 (lower is better) Translates to: SRALRLLGKRSTTELNPQQHKIA*GQTGLL Trigger: CAGCAATCCGGTTTGTCCTCAGGCTATCTTGTGCTG...TTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226835.2 |
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| 3UTR CAA 90 bp | GCCAGAGCGTTAGAAAGGCTTCTGGTGTTCAGGGATGGTTCCCTTTaGTTCTTCCTCAGTGTGCGGAGATGCAGTACCCAGCGCTGTGAC | + |
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Preference number: 2 (lower is better) Translates to: ARALERLLVFRDGSL*FFLSVRRCSTQRCD Trigger: GTCACAGCGCTGGGTACTGCATCTCCGCACACTGAGGAAGAACAAAAGGGAACCATCCCTGAACACCAGAAGCCTTTCTAACGCTCTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110155.3 |
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| 3UTR-3UTR TCA 90 bp | CTGATCAGGGCTACCCTTCTCAAACTCATCACATCTCGTGGGGTGACACCCCACGACACCCCACTGTACTaGAAAACATGTCTTAAGCAG | + |
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Preference number: 2 (lower is better) Translates to: LIRATLLKLITSRGVTPHDTPLY*KTCLKQ Trigger: CTGCTTAAGACATGTTTTTCAGTACAGTGGGGTGTC...GTGGGGTGTCACCCCACGAGATGTGATGAGTTTGAGAAGGGTAGCCCTGATCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000226835.2 |
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| 3UTR-3UTR TCA 90 bp | AATCCAAACCCAGAGGAGGCTTTAAGAGAGGATGCTGCTGGATCTGACCGAGAACAGCCTAAACAGTGCTaGCCTGACTCTTCGAGGTGT | + |
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Preference number: 2 (lower is better) Translates to: NPNPEEALREDAAGSDREQPKQC*PDSSRC Trigger: ACACCTCGAAGAGTCAGGTCAGCACTGTTTAGGCTG...TTCTCGGTCAGATCCAGCAGCATCCTCTCTTAAAGCCTCCTCTGGGTTTGGATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227540.2 |
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| 3UTR-3UTR GCA 90 bp | GAGGATGCTGCTGGATCTGACCGAGAACTGAACGAGGATGACAGTACAGACTGTCTGCTGCTTCCTTCGTaGCATCAAACGAATGGACCA | + |
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Preference number: 2 (lower is better) Translates to: EDAAGSDRELNEDDSTDCLLLPS*HQTNGP Trigger: TGGTCCATTCGTTTGATGGCACGAAGGAAGCAGCAG...ACAGTCTGTACTGTCATCCTCGTTCAGTTCTCGGTCAGATCCAGCAGCATCCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227540.2 |
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| 3UTR-3UTR GCA 90 bp | GCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCGTATAGGAATAAGCAATaGCAACAATATGGTCACCAG | + |
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Preference number: 2 (lower is better) Translates to: ALRLLGKRSTTELNPQPPYRNKQ*QQYGHQ Trigger: CTGGTGACCATATTGTTGGCATTGCTTATTCCTATA...CGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000226835.2 |
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| 3UTR-3UTR CCA 90 bp | CTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCGACAATTTATAAGACTCATCACATCTCGTaGGGTGACACCCCACTGTAC | + |
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Preference number: 2 (lower is better) Translates to: LGKRSTTELNPQPPTIYKTHHIS*GDTPLY Trigger: GTACAGTGGGGTGTCACCCCACGAGATGTGATGAGT...CTTATAAATTGTCGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000226835.2 |
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| 3UTR-3UTR CCA 90 bp | GCGAGCGCCTCTGCTGCCTTATTCTCCCAGAAAAGGAGCGTCAATAAAGAAGCATCTGGTGTTCAGGGATaGTTCCCTTTTGTTCTTCCT | + |
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Preference number: 2 (lower is better) Translates to: ASASAALFSQKRSVNKEASGVQG*FPFVLP Trigger: AGGAAGAACAAAAGGGAACCATCCCTGAACACCAGA...TGCTTCTTTATTGACGCTCCTTTTCTGGGAGAATAAGGCAGCAGAGGCGCTCGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110155.3 |
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| 3UTR-3UTR TCA 90 bp | AACAACAACGGATTTATTGCACCCAATGAAAATCCAAACCCAGAGGAGGCTTTAGGATGCTGCTGGATCTaGCCGAGAACTGAACGAGGA | + |
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Preference number: 2 (lower is better) Translates to: NNNGFIAPNENPNPEEALGCCWI*PRTERG Trigger: TCCTCGTTCAGTTCTCGGTCAGATCCAGCAGCATCC...TAAAGCCTCCTCTGGGTTTGGATTTTCATTGGGTGCAATAAATCCGTTGTTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227540.2 |
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| 3UTR-3UTR CCA 90 bp | ATTGCAACAACTTTTCCTTTGTTGTTCTCAGCAAGGCTCAGCAATCCTGCTAAGACTCATCACATCTCGTaGGGTGACACCCCACTGTAC | + |
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Preference number: 2 (lower is better) Translates to: IATTFPLLFSARLSNPAKTHHIS*GDTPLY Trigger: GTACAGTGGGGTGTCACCCCACGAGATGTGATGAGT...CTTAGCAGGATTGCTGAGCCTTGCTGAGAACAACAAAGGAAAAGTTGTTGCAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226707.2 ENSMUST00000226835.2 |
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| 3UTR-3UTR TCA 90 bp | AATCCAAACCCAGAGGAGGCTTTAAGAGAGGATGCTGCTGGATCTGACCGAGAATGGATGTTGAAACTGTaGATGCTTTCCGTTTACTGT | + |
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Preference number: 2 (lower is better) Translates to: NPNPEEALREDAAGSDREWMLKL*MLSVYC Trigger: ACAGTAAACGGAAAGCATTCACAGTTTCAACATCCA...TTCTCGGTCAGATCCAGCAGCATCCTCTCTTAAAGCCTCCTCTGGGTTTGGATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227540.2 |
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| 3UTR-3UTR GCA 90 bp | AACAACAACGGATTTATTGCACCCAATGAAAATCCAAACCCAGAGGAGGCTTTAGTCAACCAAAGCAGCTaGTGCTTCCTTCGTGCCATC | + |
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Preference number: 2 (lower is better) Translates to: NNNGFIAPNENPNPEEALVNQSS*CFLRAI Trigger: GATGGCACGAAGGAAGCAGCAGCTGCTTTGGTTGAC...TAAAGCCTCCTCTGGGTTTGGATTTTCATTGGGTGCAATAAATCCGTTGTTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227540.2 |
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| 3UTR-3UTR GCA 90 bp | AATCCAAACCCAGAGGAGGCTTTAAGAGAGGATGCTGCTGGATCTGACCGAGAAAAGCATCACTGTGTTTaGAGTGAGAGCATAAAACTG | + |
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Preference number: 2 (lower is better) Translates to: NPNPEEALREDAAGSDREKHHCV*SESIKL Trigger: CAGTTTTATGCTCTCACTGCAAACACAGTGATGCTT...TTCTCGGTCAGATCCAGCAGCATCCTCTCTTAAAGCCTCCTCTGGGTTTGGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227540.2 |
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| 3UTR-3UTR TCA 90 bp | CAAGTTAGCTTCAGTTTTCAGAGAGCACTCCACCCACATACCGGTCTCTATTTCATTATCTCCAATATTTaGATGATGTGGCAGGGCTCG | + |
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Preference number: 2 (lower is better) Translates to: QVSFSFQRALHPHTGLYFIISNI*MMWQGS Trigger: CGAGCCCTGCCACATCATTCAAATATTGGAGATAAT...GAAATAGAGACCGGTATGTGGGTGGAGTGCTCTCTGAAAACTGAAGCTAACTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226707.2 |
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| 3UTR-3UTR TCA 90 bp | AACAACAACGGATTTATTGCACCCAATGAAAATCCAAACCCAGAGGAGGCTTTAGATCTGACCGAGAACTaGACGAGGATGACAGTACAG | + |
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Preference number: 2 (lower is better) Translates to: NNNGFIAPNENPNPEEALDLTEN*TRMTVQ Trigger: CTGTACTGTCATCCTCGTTCAGTTCTCGGTCAGATC...TAAAGCCTCCTCTGGGTTTGGATTTTCATTGGGTGCAATAAATCCGTTGTTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227540.2 |
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| 3UTR-3UTR CCA 90 bp | AATCCAAACCCAGAGGAGGCTTTAAGAGAGGATGCTGCTGGATCTGACCGAGAATCAGTTCATCCAAAATaGAGTAATATGCTTCACGTC | + |
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Preference number: 2 (lower is better) Translates to: NPNPEEALREDAAGSDRESVHPK*SNMLHV Trigger: GACGTGAAGCATATTACTCCATTTTGGATGAACTGA...TTCTCGGTCAGATCCAGCAGCATCCTCTCTTAAAGCCTCCTCTGGGTTTGGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227540.2 |
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| 3UTR-3UTR TCA 90 bp | CCTAACTTCTGTGGCCTAAGAAATACACACATGACTGCCCTAGAATATTCTTTTTTGCTGAAGACCTGCTaGCTTCAACACACGTTTCCA | + |
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Preference number: 2 (lower is better) Translates to: PNFCGLRNTHMTALEYSFLLKTC*LQHTFP Trigger: TGGAAACGTGTGTTGAAGTCAGCAGGTCTTCAGCAA...AAAAGAATATTCTAGGGCAGTCATGTGTGTATTTCTTAGGCCACAGAAGTTAGG 42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000226835.2 |
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| 3UTR-3UTR TCA 90 bp | GGATTTATTGCACCCAATGAAAATCCAAACCCAGAGGAGGCTTTAAGAGAGGATTCACTGTGTTTGCAGTaGGAGCATAAAACTGTCCTT | + |
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Preference number: 2 (lower is better) Translates to: GFIAPNENPNPEEALREDSLCLQ*EHKTVL Trigger: AAGGACAGTTTTATGCTCTCACTGCAAACACAGTGA...ATCCTCTCTTAAAGCCTCCTCTGGGTTTGGATTTTCATTGGGTGCAATAAATCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227540.2 |
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| 3UTR-3UTR CCA 90 bp | AACAACAACGGATTTATTGCACCCAATGAAAATCCAAACCCAGAGGAGGCTTTATGTTATAGAGCGTGTTaGCCAATTCCAGTGGGTCTT | + |
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Preference number: 2 (lower is better) Translates to: NNNGFIAPNENPNPEEALCYRAC*PIPVGL Trigger: AAGACCCACTGGAATTGGCCAACACGCTCTATAACA...TAAAGCCTCCTCTGGGTTTGGATTTTCATTGGGTGCAATAAATCCGTTGTTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227540.2 |
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| 3UTR-3UTR CCA 90 bp | AAGTTAGCTTCAGTTTTCAGAGAGCACTCCACCCACATACCGGTCTCTATTTCTTCATCTTCTGAATGCTaGGTTTTAGATTCACCCTCA | + |
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Preference number: 2 (lower is better) Translates to: KLASVFREHSTHIPVSISSSSEC*VLDSPS Trigger: TGAGGGTGAATCTAAAACCCAGCATTCAGAAGATGA...AGAAATAGAGACCGGTATGTGGGTGGAGTGCTCTCTGAAAACTGAAGCTAACTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226707.2 |
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| 3UTR CAA 90 bp | GCTGCCTTATTCTCCCAGAAAAGGAGCGTCAATAAAGAAGCAGTTTaGTTCTTGGCAGTAACTCTTCTACATTTGTCTGCTAGAAAGCAT | + |
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Preference number: 2 (lower is better) Translates to: AALFSQKRSVNKEAV*FLAVTLLHLSARKH Trigger: ATGCTTTCTAGCAGACAAATGTAGAAGAGTTACTGCCAAGAACAAAACTGCTTCTTTATTGACGCTCCTTTTCTGGGAGAATAAGGCAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110155.3 |
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| 3UTR-3UTR TCA 90 bp | AACAACAACGGATTTATTGCACCCAATGAAAATCCAAACCCAGAGGAGGCTTTAAAACAGTATGGATGTTaGAACTGTGAATGCTTTCCG | + |
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Preference number: 2 (lower is better) Translates to: NNNGFIAPNENPNPEEALKQYGC*NCECFP Trigger: CGGAAAGCATTCACAGTTTCAACATCCATACTGTTT...TAAAGCCTCCTCTGGGTTTGGATTTTCATTGGGTGCAATAAATCCGTTGTTGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227540.2 |
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| 3UTR-3UTR GCA 90 bp | GGATTTATTGCACCCAATGAAAATCCAAACCCAGAGGAGGCTTTAAGAGAGGATATAATGATCATATGGTaGGTCAATTGTGCCAAAGAT | + |
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Preference number: 2 (lower is better) Translates to: GFIAPNENPNPEEALREDIMIIW*VNCAKD Trigger: ATCTTTGGCACAATTGACGCACCATATGATCATTAT...ATCCTCTCTTAAAGCCTCCTCTGGGTTTGGATTTTCATTGGGTGCAATAAATCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227540.2 |
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| 3UTR-3UTR CCA 90 bp | TTTCACTTTCTATTTCTCTCTGTGCTACATACCAGAAGTGAGAAACACATAAAGGTCACTCCTCAAAGGTaGATCGTGTTATTTAGACTT | + |
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Preference number: 2 (lower is better) Translates to: FHFLFLSVLHTRSEKHIKVTPQR*IVLFRL Trigger: AAGTCTAAATAACACGATCCACCTTTGAGGAGTGAC...CTTTATGTGTTTCTCACTTCTGGTATGTAGCACAGAGAGAAATAGAAAGTGAAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110155.3 |
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| 3UTR GCA 72 bp | TGTTCAGGGATGGTTCCCTTTTGTTCTTCCTCAGTGTaGGGAGATGCAGTACCCAGCGCTGTGACCCCGCAG | + |
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Preference number: 3 (lower is better) Translates to: CSGMVPFCSSSV*GDAVPSAVTPQ Trigger: CTGCGGGGTCACAGCGCTGGGTACTGCATCTCCGCACACTGAGGAAGAACAAAAGGGAACCATCCCTGAACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110155.3 |
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| 3UTR TCA 72 bp | TTAGTGTGGAGTTACAGAGGAAAGGTCACTGAGCGATaGGACGGAGGACAGGCTCTCACACTCAGGGTAACG | + |
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Preference number: 3 (lower is better) Translates to: LVWSYRGKVTER*DGGQALTLRVT Trigger: CGTTACCCTGAGTGTGAGAGCCTGTCCTCCGTCTCATCGCTCAGTGACCTTTCCTCTGTAACTCCACACTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226835.2 |
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| 3UTR-3UTR CAA 90 bp | GCGAGCGCCTCTGCTGCCTTATTCTCCCAGAAAAGGAGCGTCAATAAAGAAGCAAGGGATGGTTCCCTTTaGTTCTTCCTCAGTGTGCGG | + |
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Preference number: 3 (lower is better) Translates to: ASASAALFSQKRSVNKEARDGSL*FFLSVR Trigger: CCGCACACTGAGGAAGAACAAAAGGGAACCATCCCT...TGCTTCTTTATTGACGCTCCTTTTCTGGGAGAATAAGGCAGCAGAGGCGCTCGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110155.3 |
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| 3UTR TCA 72 bp | TTGAGGTTTAGTGTGGAGTTACAGAGGAAAGGTCACTaGGCGATGAGACGGAGGACAGGCTCTCACACTCAG | + |
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Preference number: 3 (lower is better) Translates to: LRFSVELQRKGH*AMRRRTGSHTQ Trigger: CTGAGTGTGAGAGCCTGTCCTCCGTCTCATCGCTCAGTGACCTTTCCTCTGTAACTCCACACTAAACCTCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226835.2 |
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| 3UTR-3UTR CAA 90 bp | CTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCGACAATTTATAAGCTTACCATCACTGACTaGCTGTGCTGGCTGACTTGT | + |
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Preference number: 3 (lower is better) Translates to: LGKRSTTELNPQPPTIYKLTITD*LCWLTC Trigger: ACAAGTCAGCCAGCACAGCAAGTCAGTGATGGTAAG...CTTATAAATTGTCGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000226835.2 |
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| 3UTR-3UTR CAA 90 bp | GAGGATGCTGCTGGATCTGACCGAGAACTGAACGAGGATGACAGTACAGACTGTACAACTTTTCCTTTGTaGTTCTCAGCAAGGCTCAGC | + |
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Preference number: 3 (lower is better) Translates to: EDAAGSDRELNEDDSTDCTTFPL*FSARLS Trigger: GCTGAGCCTTGCTGAGAACAACAAAGGAAAAGTTGT...ACAGTCTGTACTGTCATCCTCGTTCAGTTCTCGGTCAGATCCAGCAGCATCCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227540.2 |
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| 3UTR TCA 72 bp | ACTGACTTGCTGTGCTGGCTGACTTGTGAGGAGGTTTaGGGTTTAGTGTGGAGTTACAGAGGAAAGGTCACT | + |
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Preference number: 3 (lower is better) Translates to: TDLLCWLTCEEV*GLVWSYRGKVT Trigger: AGTGACCTTTCCTCTGTAACTCCACACTAAACCTCAAACCTCCTCACAAGTCAGCCAGCACAGCAAGTCAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226835.2 |
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| 3UTR TCA 72 bp | TTGTTCTCAGCAAGGCTCAGCAATCCTGCTAAGTACTaGTCAGGGCTACCCTTCTCAAACTCATCACATCTC | + |
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Preference number: 3 (lower is better) Translates to: LFSARLSNPAKY*SGLPFSNSSHL Trigger: GAGATGTGATGAGTTTGAGAAGGGTAGCCCTGATCAGTACTTAGCAGGATTGCTGAGCCTTGCTGAGAACAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226707.2 ENSMUST00000226835.2 |
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| 3UTR TCA 72 bp | AATATGGTCACCAGTGATCATTGTGAAGGGCAACACTaGGGAGGGAAAGCAAGCCAGACTCTCTTCTGTAAC | + |
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Preference number: 3 (lower is better) Translates to: NMVTSDHCEGQH*GGKASQTLFCN Trigger: GTTACAGAAGAGAGTCTGGCTTGCTTTCCCTCCTCAGTGTTGCCCTTCACAATGATCACTGGTGACCATATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226835.2 |
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| 3UTR-3UTR CAA 90 bp | AATCCAAACCCAGAGGAGGCTTTAAGAGAGGATGCTGCTGGATCTGACCGAGAATTACTTCTGGTCTCTTaGGTGACCTGTTTAAATTTG | + |
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Preference number: 3 (lower is better) Translates to: NPNPEEALREDAAGSDRELLLVS*VTCLNL Trigger: CAAATTTAAACAGGTCACCAAAGAGACCAGAAGTAA...TTCTCGGTCAGATCCAGCAGCATCCTCTCTTAAAGCCTCCTCTGGGTTTGGATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227540.2 |
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| 3UTR-3UTR CAA 90 bp | ATTGCAACAACTTTTCCTTTGTTGTTCTCAGCAAGGCTCAGCAATCCTGCTAAGACAACTTTTCCTTTGTaGTTCTCAGCAAGGCTCAGC | + |
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Preference number: 3 (lower is better) Translates to: IATTFPLLFSARLSNPAKTTFPL*FSARLS Trigger: GCTGAGCCTTGCTGAGAACAACAAAGGAAAAGTTGT...CTTAGCAGGATTGCTGAGCCTTGCTGAGAACAACAAAGGAAAAGTTGTTGCAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226707.2 ENSMUST00000226835.2 |
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| 3UTR-3UTR CAA 90 bp | AAGTTAGCTTCAGTTTTCAGAGAGCACTCCACCCACATACCGGTCTCTATTTCTCATTATCTCCAATATTaGAATGATGTGGCAGGGCTC | + |
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Preference number: 3 (lower is better) Translates to: KLASVFREHSTHIPVSISHYLQY*NDVAGL Trigger: GAGCCCTGCCACATCATTCAAATATTGGAGATAATG...AGAAATAGAGACCGGTATGTGGGTGGAGTGCTCTCTGAAAACTGAAGCTAACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226707.2 |
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| 3UTR-3UTR CAA 90 bp | CAAGTTAGCTTCAGTTTTCAGAGAGCACTCCACCCACATACCGGTCTCTATTTCCACTTTAAGAGTGGATaGTGCTTTCCAAGATCTTGT | + |
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Preference number: 3 (lower is better) Translates to: QVSFSFQRALHPHTGLYFHFKSG*CFPRSC Trigger: ACAAGATCTTGGAAAGCACAATCCACTCTTAAAGTG...GAAATAGAGACCGGTATGTGGGTGGAGTGCTCTCTGAAAACTGAAGCTAACTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226707.2 |
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| 3UTR GCA 72 bp | CAGAGTCCTTTAAGATTTCACTTTAAGAGTGGATTGTaGTTTCCAAGATCTTGTAGCAGAGGTTGTCTTCAC | + |
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Preference number: 3 (lower is better) Translates to: QSPLRFHFKSGL*FPRSCSRGCLH Trigger: GTGAAGACAACCTCTGCTACAAGATCTTGGAAAGCACAATCCACTCTTAAAGTGAAATCTTAAAGGACTCTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226707.2 |
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| 3UTR-3UTR CAA 90 bp | AACAACAACGGATTTATTGCACCCAATGAAAATCCAAACCCAGAGGAGGCTTTAAAAACAGGGACAGAATaGAGAAATAGGCTTGTTATC | + |
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Preference number: 3 (lower is better) Translates to: NNNGFIAPNENPNPEEALKTGTE*RNRLVI Trigger: GATAACAAGCCTATTTCTCAATTCTGTCCCTGTTTT...TAAAGCCTCCTCTGGGTTTGGATTTTCATTGGGTGCAATAAATCCGTTGTTGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227540.2 |
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| CDS-3UTR CCA 90 bp | TGTTCAGGGATGGTTCCCTTTTGTTCTTCCTCAGTGTGCGGAGATGCAGTACCCACTCATCACATCTCGTaGGGTGACACCCCACTGTAC | + |
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Preference number: 4 (lower is better) Translates to: CSGMVPFCSSSVCGDAVPTHHIS*GDTPLY Trigger: GTACAGTGGGGTGTCACCCCACGAGATGTGATGAGT...GGGTACTGCATCTCCGCACACTGAGGAAGAACAAAAGGGAACCATCCCTGAACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110155.3 |
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| CDS-3UTR GCA 90 bp | GTTCAGGGATGGTTCCCTTTTGTTCTTCCTCAGTGTGCGGAGATGCAGTACCCACTGCTGCTTCCTTCGTaGCATCAAACGAATGGACCA | + |
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Preference number: 4 (lower is better) Translates to: VQGWFPFVLPQCAEMQYPLLLPS*HQTNGP Trigger: TGGTCCATTCGTTTGATGGCACGAAGGAAGCAGCAG...TGGGTACTGCATCTCCGCACACTGAGGAAGAACAAAAGGGAACCATCCCTGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110155.3 |
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| 3UTR CAA 72 bp | TTAGAAAGGCTTCTGGTGTTCAGGGATGGTTCCCTTTaGTTCTTCCTCAGTGTGCGGAGATGCAGTACCCAG | + |
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Preference number: 4 (lower is better) Translates to: LERLLVFRDGSL*FFLSVRRCSTQ Trigger: CTGGGTACTGCATCTCCGCACACTGAGGAAGAACAAAAGGGAACCATCCCTGAACACCAGAAGCCTTTCTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110155.3 |
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| CDS-3UTR GCA 90 bp | CTCAAAGGTGGATCGTGTTATTTAGACTTTACAGGTGAGGAAATGAGGTTGGAGGTCAACCAAAGCAGCTaGTGCTTCCTTCGTGCCATC | + |
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Preference number: 4 (lower is better) Translates to: LKGGSCYLDFTGEEMRLEVNQSS*CFLRAI Trigger: GATGGCACGAAGGAAGCAGCAGCTGCTTTGGTTGAC...CTCCAACCTCATTTCCTCACCTGTAAAGTCTAAATAACACGATCCACCTTTGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110155.3 |
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| CDS-3UTR CCA 90 bp | AACAACAACGGATTTATTGCACCCAATGAAAATCCAAACCCAGAGGAGGCTTTAACTCATCACATCTCGTaGGGTGACACCCCACTGTAC | + |
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Preference number: 4 (lower is better) Translates to: NNNGFIAPNENPNPEEALTHHIS*GDTPLY Trigger: GTACAGTGGGGTGTCACCCCACGAGATGTGATGAGT...TAAAGCCTCCTCTGGGTTTGGATTTTCATTGGGTGCAATAAATCCGTTGTTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227540.2 |
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| CDS-3UTR TCA 90 bp | AGCGCCTCTGCTGCCTTATTCTCCCAGAAAAGGAGCGTCAATAAAGAAGCAGTTGACACCCCACTGTACTaGAAAACATGTCATTTGTTT | + |
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Preference number: 4 (lower is better) Translates to: SASAALFSQKRSVNKEAVDTPLY*KTCHLF Trigger: AAACAAATGACATGTTTTTCAGTACAGTGGGGTGTC...AACTGCTTCTTTATTGACGCTCCTTTTCTGGGAGAATAAGGCAGCAGAGGCGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000110155.3 |
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| CDS-3UTR GCA 90 bp | CTCCAATATTTGACTCCTTGGTTGCTGCTGTTGTCCATACTTAATATGCAGATAGTCAACCAAAGCAGCTaGTGCTTCCTTCGTGCCATC | + |
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Preference number: 4 (lower is better) Translates to: LQYLTPWLLLLSILNMQIVNQSS*CFLRAI Trigger: GATGGCACGAAGGAAGCAGCAGCTGCTTTGGTTGAC...TATCTGCATATTAAGTATGGACAACAGCAGCAACCAAGGAGTCAAATATTGGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238706.2 |
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| CDS-3UTR GCA 90 bp | CTCCAATATTTGACTCCTTGGTTGCTGCTGTTGTCCATACTTAATATGCAGATACTGCTGCTTCCTTCGTaGCATCAAACGAATGGACCA | + |
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Preference number: 4 (lower is better) Translates to: LQYLTPWLLLLSILNMQILLLPS*HQTNGP Trigger: TGGTCCATTCGTTTGATGGCACGAAGGAAGCAGCAG...TATCTGCATATTAAGTATGGACAACAGCAGCAACCAAGGAGTCAAATATTGGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238706.2 |
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| CDS-3UTR TCA 90 bp | CTCCAATATTTGACTCCTTGGTTGCTGCTGTTGTCCATACTTAATATGCAGATAGTCTTTTTCTTGTCATaGTGTGGCAGGGCTCGTTTC | + |
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Preference number: 4 (lower is better) Translates to: LQYLTPWLLLLSILNMQIVFFLS*CGRARF Trigger: GAAACGAGCCCTGCCACATCATGACAAGAAAAAGAC...TATCTGCATATTAAGTATGGACAACAGCAGCAACCAAGGAGTCAAATATTGGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000238706.2 |
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| 3UTR CAA 72 bp | GCCCAGAGTCCTTTAAGATTTCACTTTAAGAGTGGATaGTGCTTTCCAAGATCTTGTAGCAGAGGTTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: AQSPLRFHFKSG*CFPRSCSRGCL Trigger: AAGACAACCTCTGCTACAAGATCTTGGAAAGCACAATCCACTCTTAAAGTGAAATCTTAAAGGACTCTGGGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226707.2 |
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| 3UTR CAA 72 bp | CATTATCTCCAATATTTGACTCCTTGGTTGCTGCTGTaGTCCATACTTAATATGCAGATAACCACCAGGTCG | + |
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Preference number: 4 (lower is better) Translates to: HYLQYLTPWLLL*SILNMQITTRS Trigger: CGACCTGGTGGTTATCTGCATATTAAGTATGGACAACAGCAGCAACCAAGGAGTCAAATATTGGAGATAATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238706.2 |
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| CDS-3UTR CAA 90 bp | CTGCTGCTTCCTTCGTGCCATCAAACGAATGGACCACTCCACCCACATACCGGTATAAGAGGGTACCATTaGTTTGTGCCAACTGCAGTG | + |
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Preference number: 5 (lower is better) Translates to: LLLPSCHQTNGPLHPHTGIRGYH*FVPTAV Trigger: CACTGCAGTTGGCACAAACAAATGGTACCCTCTTAT...ACCGGTATGTGGGTGGAGTGGTCCATTCGTTTGATGGCACGAAGGAAGCAGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226835.2 |
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| CDS-3UTR CAA 90 bp | GCGCCTCTGCTGCCTTATTCTCCCAGAAAAGGAGCGTCAATAAAGAAGCAGTTTACAACTTTTCCTTTGTaGTTCTCAGCAAGGCTCAGC | + |
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Preference number: 5 (lower is better) Translates to: APLLPYSPRKGASIKKQFTTFPL*FSARLS Trigger: GCTGAGCCTTGCTGAGAACAACAAAGGAAAAGTTGT...AAACTGCTTCTTTATTGACGCTCCTTTTCTGGGAGAATAAGGCAGCAGAGGCGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110155.3 |
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| CDS-3UTR CAA 90 bp | TATCTCCAATATTTGACTCCTTGGTTGCTGCTGTTGTCCATACTTAATATGCAGCTTCTGTGGCAAGCTTaGAGTCTTTTTCTTGTCATG | + |
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Preference number: 5 (lower is better) Translates to: YLQYLTPWLLLLSILNMQLLWQA*SLFLVM Trigger: CATGACAAGAAAAAGACTCAAAGCTTGCCACAGAAG...CTGCATATTAAGTATGGACAACAGCAGCAACCAAGGAGTCAAATATTGGAGATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000238706.2 |
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