Pregenerated sensors for TAS2R136 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000053217

Ensembl transcript IDs: ENSMUST00000065532.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	AGAACCTTGCTCTCACCTGAACCATTGCCAACACAAAGGCCTGTTTaGTCCTCTTGTTTCCCCATAGCAAGATATAAGAATGTCTTGAAG	+
Preference number: 5 (lower is better) Translates to: RTLLSPEPLPTQRPV*SSCFPIARYKNVLK Trigger: CTTCAAGACATTCTTATATCTTGCTATGGGGAAACAAGAGGATCAAACAGGCCTTTGTGTTGGCAATGGTTCAGGTGAGAGCAAGGTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065532.2
CDS TCA 72 bp	GGTTTCTTTTCTTTCAGCCAGAACCTTGCTCTCACCTaGACCATTGCCAACACAAAGGCCTGTTTGATCCTC	+
Preference number: 6 (lower is better) Translates to: GFFSFSQNLALT*TIANTKACLIL Trigger: GAGGATCAAACAGGCCTTTGTGTTGGCAATGGTTCAGGTGAGAGCAAGGTTCTGGCTGAAAGAAAAGAAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065532.2
CDS GCA 72 bp	TTCTTTCAGCCAGAACCTTGCTCTCACCTGAACCATTaGCAACACAAAGGCCTGTTTGATCCTCTTGTTTCC	+
Preference number: 6 (lower is better) Translates to: FFQPEPCSHLNH*QHKGLFDPLVS Trigger: GGAAACAAGAGGATCAAACAGGCCTTTGTGTTGGCAATGGTTCAGGTGAGAGCAAGGTTCTGGCTGAAAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065532.2
CDS TCA 72 bp	CTCTCACCTGAACCATTGCCAACACAAAGGCCTGTTTaGTCCTCTTGTTTCCCCATAGCAAGATATAAGAAT	+
Preference number: 6 (lower is better) Translates to: LSPEPLPTQRPV*SSCFPIARYKN Trigger: ATTCTTATATCTTGCTATGGGGAAACAAGAGGATCAAACAGGCCTTTGTGTTGGCAATGGTTCAGGTGAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065532.2
CDS CAA 72 bp	TGTCTTCCCAGTCAAGTTGCCCTGGTGTCCATTTGCTaGTGTTGTCTCACATATGGTTACCATTATAAGATT	+
Preference number: 6 (lower is better) Translates to: CLPSQVALVSIC*CCLTYGYHYKI Trigger: AATCTTATAATGGTAACCATATGTGAGACAACACAAGCAAATGGACACCAGGGCAACTTGACTGGGAAGACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065532.2
CDS CAA 90 bp	ATGGATGCAATGCTTACCAAGAAACTCATCATGTCTGAGCAAGTTTaGAAAAGAGGAAAAATGAAAGGTAGCTGTTGTGTCACTGGCTGT	+
Preference number: 6 (lower is better) Translates to: MDAMLTKKLIMSEQV*KRGKMKGSCCVTGC Trigger: ACAGCCAGTGACACAACAGCTACCTTTCATTTTTCCTCTTTTCAAAACTTGCTCAGACATGATGAGTTTCTTGGTAAGCATTGCATCCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065532.2
CDS CCA 72 bp	CAAAGGTTCCAAGAACAATTTTCACCAGCATTGCAATaGATGCAATGCTTACCAAGAAACTCATCATGTCTG	+
Preference number: 6 (lower is better) Translates to: QRFQEQFSPALQ*MQCLPRNSSCL Trigger: CAGACATGATGAGTTTCTTGGTAAGCATTGCATCCATTGCAATGCTGGTGAAAATTGTTCTTGGAACCTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065532.2
CDS CAA 72 bp	CATTGGCAAAGGTTCCAAGAACAATTTTCACCAGCATaGCAATGGATGCAATGCTTACCAAGAAACTCATCA	+
Preference number: 6 (lower is better) Translates to: HWQRFQEQFSPA*QWMQCLPRNSS Trigger: TGATGAGTTTCTTGGTAAGCATTGCATCCATTGCAATGCTGGTGAAAATTGTTCTTGGAACCTTTGCCAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065532.2
CDS GCA 72 bp	CAAGAACAATTTTCACCAGCATTGCAATGGATGCAATaGTTACCAAGAAACTCATCATGTCTGAGCAAGTTT	+
Preference number: 6 (lower is better) Translates to: QEQFSPALQWMQ*LPRNSSCLSKF Trigger: AAACTTGCTCAGACATGATGAGTTTCTTGGTAAGCATTGCATCCATTGCAATGCTGGTGAAAATTGTTCTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065532.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu