RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TAOK1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000017291

Ensembl transcript IDs: ENSMUST00000017435.11, ENSMUST00000058496.8

Found 355 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AAAGAAAACCCACTGGTGAGGAGCGGAGGTGTATGTGCTTCAGCATaGATGCTGCCTGCTGTTAGGGACTCACAGAACTGGAATATGAAG +
Preference number: 1 (lower is better)
Translates to: KENPLVRSGGVCASA*MLPAVRDSQNWNMK
Trigger: CTTCATATTCCAGTTCTGTGAGTCCCTAACAGCAGGCAGCATCCATGCTGAAGCACATACACCTCCGCTCCTCACCAGTGGGTTTTCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CCA 90 bp GCAGGATGGGATCTCCAGGACAGTTTCTTTAGTGTTATGTTTACGTaGTGTCCGGGCAGCCAAGACATCACAATGACTATGTACAAAGCT +
Preference number: 1 (lower is better)
Translates to: AGWDLQDSFFSVMFT*CPGSQDITMTMYKA
Trigger: AGCTTTGTACATAGTCATTGTGATGTCTTGGCTGCCCGGACACCACGTAAACATAACACTAAAGAAACTGTCCTGGAGATCCCATCCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR GCA 90 bp CCCTTCCTTCAATCCAGTATGCTTTCTCTCCCAGTGATCATCTCCTaGTCATCTTACAGTTTAGGAACCTTAGTTACCCTTCTTGGCAGT +
Preference number: 1 (lower is better)
Translates to: PFLQSSMLSLPVIIS*SSYSLGTLVTLLGS
Trigger: ACTGCCAAGAAGGGTAACTAAGGTTCCTAAACTGTAAGATGAGCAGGAGATGATCACTGGGAGAGAAAGCATACTGGATTGAAGGAAGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CCA 90 bp TGTGCTTCAGCATGGATGCTGCCTGCTGTTAGGGACTCACAGAACTaGAATATGAAGGAAGGCTTTAGATCTTCTGACACATTTCTTAGG +
Preference number: 1 (lower is better)
Translates to: CASAWMLPAVRDSQN*NMKEGFRSSDTFLR
Trigger: CCTAAGAAATGTGTCAGAAGATCTAAAGCCTTCCTTCATATTCCAGTTCTGTGAGTCCCTAACAGCAGGCAGCATCCATGCTGAAGCACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CCA 90 bp GAAAAACTGGGTGCCACACAATTAGATGGGGGCAGAAATCCTTACTaGACAGACAGACAGTCAGTATTCAAACACACTAGTGTGAGTGCA +
Preference number: 1 (lower is better)
Translates to: EKLGATQLDGGRNPY*TDRQSVFKHTSVSA
Trigger: TGCACTCACACTAGTGTGTTTGAATACTGACTGTCTGTCTGTCCAGTAAGGATTTCTGCCCCCATCTAATTGTGTGGCACCCAGTTTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR GCA 90 bp TTGATGTTATCATCCAGGTATAATGACCTACATGGAAAAACTGGGTaGCACACAATTAGATGGGGGCAGAAATCCTTACTGGACAGACAG +
Preference number: 1 (lower is better)
Translates to: LMLSSRYNDLHGKTG*HTIRWGQKSLLDRQ
Trigger: CTGTCTGTCCAGTAAGGATTTCTGCCCCCATCTAATTGTGTGGCACCCAGTTTTTCCATGTAGGTCATTATACCTGGATGATAACATCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CCA 90 bp AGGTATAATGACCTACATGGAAAAACTGGGTGCCACACAATTAGATaGGGGCAGAAATCCTTACTGGACAGACAGACAGTCAGTATTCAA +
Preference number: 1 (lower is better)
Translates to: RYNDLHGKTGCHTIR*GQKSLLDRQTVSIQ
Trigger: TTGAATACTGACTGTCTGTCTGTCCAGTAAGGATTTCTGCCCCCATCTAATTGTGTGGCACCCAGTTTTTCCATGTAGGTCATTATACCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR TCA 90 bp GAAAAGCAGGACCCAAAGTTAGTAGCAAGAGCTCTTCAAGACAACTaGAAAGGGAGCAGGACAATAACTTATACAAAACCTCTGGTCTCT +
Preference number: 1 (lower is better)
Translates to: EKQDPKLVARALQDN*KGSRTITYTKPLVS
Trigger: AGAGACCAGAGGTTTTGTATAAGTTATTGTCCTGCTCCCTTTTCAGTTGTCTTGAAGAGCTCTTGCTACTAACTTTGGGTCCTGCTTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR TCA 90 bp CAAACAAAGCAAAGGTACTGTTTGGAGTCTCAAGTTTGGGTCACATaGGATATTGTACAAGAAACAAAATGTCAGGCTAGCTATACAGGC +
Preference number: 1 (lower is better)
Translates to: QTKQRYCLESQVWVT*DIVQETKCQASYTG
Trigger: GCCTGTATAGCTAGCCTGACATTTTGTTTCTTGTACAATATCTCATGTGACCCAAACTTGAGACTCCAAACAGTACCTTTGCTTTGTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CCA 90 bp CGCCACACAAGCAATGGGATATTAACTAACATTGATGAAGAACACTaGATTGATCCTTCATTGAAGAACAGACAAAACACACTCCCCAAA +
Preference number: 1 (lower is better)
Translates to: RHTSNGILTNIDEEH*IDPSLKNRQNTLPK
Trigger: TTTGGGGAGTGTGTTTTGTCTGTTCTTCAATGAAGGATCAATCCAGTGTTCTTCATCAATGTTAGTTAATATCCCATTGCTTGTGTGGCG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR GCA 90 bp ATAGATGGCAGTTCAAATATGGCATCATCCAATACCTCTGGCATTTaGTTTGTGTTGGCTATAGGTCTTCATTTTTGTACAAACAAAGCA +
Preference number: 1 (lower is better)
Translates to: IDGSSNMASSNTSGI*FVLAIGLHFCTNKA
Trigger: TGCTTTGTTTGTACAAAAATGAAGACCTATAGCCAACACAAAGCAAATGCCAGAGGTATTGGATGATGCCATATTTGAACTGCCATCTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR TCA 90 bp TCATTTTTCCCTTCACCAAAGGGAACTAGAAATGTACAAATTCATTaGCGAACCTCAATGATAACATATCAGTTAGCTGATAACCCTCAT +
Preference number: 1 (lower is better)
Translates to: SFFPSPKGTRNVQIH*RTSMITYQLADNPH
Trigger: ATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGTTCGTCAATGAATTTGTACATTTCTAGTTCCCTTTGGTGAAGGGAAAAATGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CAA 90 bp CCTTTACCAGCTGGTGCTGACAGTGAGGGAGAGGCCTCTTCCTCATaGCAACCTTTGGTAAGCCTCCACTGTGGGCCTCTGCTTACTCTA +
Preference number: 2 (lower is better)
Translates to: PLPAGADSEGEASSS*QPLVSLHCGPLLTL
Trigger: TAGAGTAAGCAGAGGCCCACAGTGGAGGCTTACCAAAGGTTGCAATGAGGAAGAGGCCTCTCCCTCACTGTCAGCACCAGCTGGTAAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CAA 90 bp GCTGGTGCTGACAGTGAGGGAGAGGCCTCTTCCTCATTGCAACCTTaGGTAAGCCTCCACTGTGGGCCTCTGCTTACTCTAAACATCGAA +
Preference number: 2 (lower is better)
Translates to: AGADSEGEASSSLQP*VSLHCGPLLTLNIE
Trigger: TTCGATGTTTAGAGTAAGCAGAGGCCCACAGTGGAGGCTTACCAAAGGTTGCAATGAGGAAGAGGCCTCTCCCTCACTGTCAGCACCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CAA 90 bp GAAACTGTGCAGGCTGAATTACCCGTACTTTGGGGGCGGGGACTCTaGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTC +
Preference number: 2 (lower is better)
Translates to: ETVQAELPVLWGRGL*SIKTSFHSLRSLTF
Trigger: GAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAGAGTCCCCGCCCCCAAAGTACGGGTAATTCAGCCTGCACAGTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp ACCTCTGGTGTGCTACAAGCTCGCCATGCTCTCATCCTGTTAAACACACATATAACGGTAGTACCCAAGTaGGGAGGCTGCTGTGATGAT +
Preference number: 2 (lower is better)
Translates to: TSGVLQARHALILLNTHITVVPK*GGCCDD
Trigger: ATCATCACAGCAGCCTCCTCACTTGGGTACTACCGT...TATATGTGTGTTTAACAGGATGAGAGCATGGCGAGCTTGTAGCACACCAGAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTGAGCGGAGGTGTATGTaGTTCAGCATGGATGCTGCC +
Preference number: 2 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSERRCM*FSMDAA
Trigger: GGCAGCATCCATGCTGAAGCACATACACCTCCGCTC...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTATTCCCTCCTCCCTGCTaGGCATCCCTGTCACAGGAA +
Preference number: 2 (lower is better)
Translates to: LIYPVGILLERINLFLYLFPPPC*ASLSQE
Trigger: TTCCTGTGACAGGGATGCTCAGCAGGGAGGAGGGAA...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CAA 90 bp CCCCCAATACACATACACACACCCACACACACACTTCAGTTTAGATaGCAGGAAACAGTTAACAGATGTGGTGACATAGTACATGGCTCC +
Preference number: 2 (lower is better)
Translates to: PPIHIHTPTHTLQFR*QETVNRCGDIVHGS
Trigger: GGAGCCATGTACTATGTCACCACATCTGTTAACTGTTTCCTGCAATCTAAACTGAAGTGTGTGTGTGGGTGTGTGTATGTGTATTGGGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTACGGTAGTACCCAAGTaGGGAGGCTGCTGTGATGAT +
Preference number: 2 (lower is better)
Translates to: VRLEQPRELCALYFKMVFTVVPK*GGCCDD
Trigger: ATCATCACAGCAGCCTCCTCACTTGGGTACTACCGT...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTGCAGCTGATAGTCATTaGCTCAGTGACTCCTGGTGG +
Preference number: 2 (lower is better)
Translates to: VRLEQPRELCALYFKMVFAADSH*LSDSWW
Trigger: CCACCAGGAGTCACTGAGCCAATGACTATCAGCTGC...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTAGTCTTGCTGTAACATaGGGTGGGAGTGGGGCAAGA +
Preference number: 2 (lower is better)
Translates to: VRLEQPRELCALYFKMVFSLAVT*GGSGAR
Trigger: TCTTGCCCCACTCCCACCCCATGTTACAGCAAGACT...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp CTTTGTGTTGGCTATAGGTCTTCATTTTTGTACAAACAAAGCAAAGGTACTGTTTTCCCTCCTCCCTGCTaGGCATCCCTGTCACAGGAA +
Preference number: 2 (lower is better)
Translates to: LCVGYRSSFLYKQSKGTVFPPPC*ASLSQE
Trigger: TTCCTGTGACAGGGATGCTCAGCAGGGAGGAGGGAA...AACAGTACCTTTGCTTTGTTTGTACAAAAATGAAGACCTATAGCCAACACAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp ACCTCTGGTGTGCTACAAGCTCGCCATGCTCTCATCCTGTTAAACACACATATAAGGGACTCACAGAACTaGAATATGAAGGAAGGCTTT +
Preference number: 2 (lower is better)
Translates to: TSGVLQARHALILLNTHIRDSQN*NMKEGF
Trigger: AAAGCCTTCCTTCATATTCCAGTTCTGTGAGTCCCT...TATATGTGTGTTTAACAGGATGAGAGCATGGCGAGCTTGTAGCACACCAGAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp ACCTCTGGTGTGCTACAAGCTCGCCATGCTCTCATCCTGTTAAACACACATATAAGCAAAGGTACTGTTTaGAGTCTCAAGTTTGGGTCA +
Preference number: 2 (lower is better)
Translates to: TSGVLQARHALILLNTHISKGTV*SLKFGS
Trigger: TGACCCAAACTTGAGACTCCAAACAGTACCTTTGCT...TATATGTGTGTTTAACAGGATGAGAGCATGGCGAGCTTGTAGCACACCAGAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACAGTCTTGCTGTAACATaGGGTGGGAGTGGGGCAAGA +
Preference number: 2 (lower is better)
Translates to: TSMITYQLADNPHLSGPDSLAVT*GGSGAR
Trigger: TCTTGCCCCACTCCCACCCCATGTTACAGCAAGACT...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTAAGGACAGCAGCACATaGAGTGAATGGGCAGCAAGA +
Preference number: 2 (lower is better)
Translates to: VRLEQPRELCALYFKMVFKDSST*SEWAAR
Trigger: TCTTGCTGCCCATTCACTCCATGTGCTGCTGTCCTT...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTGCTCTTCAAGACAACTaGAAAGGGAGCAGGACAATA +
Preference number: 2 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSALQDN*KGSRTI
Trigger: TATTGTCCTGCTCCCTTTTCAGTTGTCTTGAAGAGC...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATGAGCGGAGGTGTATGTaGTTCAGCATGGATGCTGCC +
Preference number: 2 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYERRCM*FSMDAA
Trigger: GGCAGCATCCATGCTGAAGCACATACACCTCCGCTC...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp GTACTTGCCCTGATTTCAGGGCATTTCAAACCCTTTCAAATTTTCCTGCTACCAACTAAAGAGGGCATTTaGCCTAGTCTACCACCAACT +
Preference number: 2 (lower is better)
Translates to: VLALISGHFKPFQIFLLPTKEGI*PSLPPT
Trigger: AGTTGGTGGTAGACTAGGGCAAATGCCCTCTTTAGT...TGGTAGCAGGAAAATTTGAAAGGGTTTGAAATGCCCTGAAATCAGGGCAAGTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTTCCCTGCCTCCTAAATaGTGGGATTATAGGCATTTG +
Preference number: 2 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSSLPPK*WDYRHL
Trigger: CAAATGCCTATAATCCCAGCATTTAGGAGGCAGGGA...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTCATGGAAAAACTGGGTaGCACACAATTAGATGGGGG +
Preference number: 2 (lower is better)
Translates to: VRLEQPRELCALYFKMVFHGKTG*HTIRWG
Trigger: CCCCCATCTAATTGTGTGGCACCCAGTTTTTCCATG...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp GTACTTGCCCTGATTTCAGGGCATTTCAAACCCTTTCAAATTTTCCTGCTACCATGCCACACAATTAGATaGGGGCAGAAATCCTTACTG +
Preference number: 2 (lower is better)
Translates to: VLALISGHFKPFQIFLLPCHTIR*GQKSLL
Trigger: CAGTAAGGATTTCTGCCCCCATCTAATTGTGTGGCA...TGGTAGCAGGAAAATTTGAAAGGGTTTGAAATGCCCTGAAATCAGGGCAAGTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTTGCCACACAATTAGATaGGGGCAGAAATCCTTACTG +
Preference number: 2 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSCHTIR*GQKSLL
Trigger: CAGTAAGGATTTCTGCCCCCATCTAATTGTGTGGCA...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACCAGTGGGCATCCTGCTaGAGAGGATTAACCTTTTCC +
Preference number: 2 (lower is better)
Translates to: TSMITYQLADNPHLSGPDQWASC*RGLTFS
Trigger: GGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTG...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTAAACAGGAAATCCCATaGGCTAAAAAGGGGGCAGTA +
Preference number: 2 (lower is better)
Translates to: VRLEQPRELCALYFKMVFKQEIP*AKKGAV
Trigger: TACTGCCCCCTTTTTAGCTCATGGGATTTCCTGTTT...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp CCTGCTACCAGTTTTTACTGTGACCACTCCTGCTGTGTACATGATTCAACTAGAGGATTGATCCTTCATTaGAGAACAGACAAAACACAC +
Preference number: 2 (lower is better)
Translates to: PATSFYCDHSCCVHDSTRGLILH*RTDKTH
Trigger: GTGTGTTTTGTCTGTTCTTCAATGAAGGATCAATCC...TCTAGTTGAATCATGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTAGCAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTGCTCTTCAAGACAACTaGAAAGGGAGCAGGACAATA +
Preference number: 2 (lower is better)
Translates to: VRLEQPRELCALYFKMVFALQDN*KGSRTI
Trigger: TATTGTCCTGCTCCCTTTTCAGTTGTCTTGAAGAGC...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTTACCAGTTTTTACTGTaGCCACTCCTGCTGTGTACA +
Preference number: 2 (lower is better)
Translates to: VRLEQPRELCALYFKMVFYQFLL*PLLLCT
Trigger: TGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTA...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACTGCTTTCTCTCCCAGTaGTCATCTCCTGCTCATCTT +
Preference number: 2 (lower is better)
Translates to: TSMITYQLADNPHLSGPDCFLSQ*SSPAHL
Trigger: AAGATGAGCAGGAGATGATCACTGGGAGAGAAAGCA...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp GTACTTGCCCTGATTTCAGGGCATTTCAAACCCTTTCAAATTTTCCTGCTACCAAGCAAAGGTACTGTTTaGAGTCTCAAGTTTGGGTCA +
Preference number: 2 (lower is better)
Translates to: VLALISGHFKPFQIFLLPSKGTV*SLKFGS
Trigger: TGACCCAAACTTGAGACTCCAAACAGTACCTTTGCT...TGGTAGCAGGAAAATTTGAAAGGGTTTGAAATGCCCTGAAATCAGGGCAAGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTCTTATACAAAACCTCTaGTCTCTCACTAAAGAGGGC +
Preference number: 2 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSLIQNL*SLTKEG
Trigger: GCCCTCTTTAGTGAGAGACCAGAGGTTTTGTATAAG...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTGTACGTCATGGAAACTaGACTGACATACCTGGACAA +
Preference number: 2 (lower is better)
Translates to: VRLEQPRELCALYFKMVFVRHGN*TDIPGQ
Trigger: TTGTCCAGGTATGTCAGTCCAGTTTCCATGACGTAC...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTAAAACAGGAAATCCCATaGGCTAAAAAGGGGGCAGTA +
Preference number: 2 (lower is better)
Translates to: LIYPVGILLERINLFLYLKQEIP*AKKGAV
Trigger: TACTGCCCCCTTTTTAGCTCATGGGATTTCCTGTTT...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTAAATGTCAGAAACTTCTaGAGGGGGTACGTCATGGAA +
Preference number: 2 (lower is better)
Translates to: LIYPVGILLERINLFLYLNVRNF*RGYVME
Trigger: TTCCATGACGTACCCCCTTCAGAAGTTTCTGACATT...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTCTAAATTTGACCAAGTaGCTCTCACAATGGGTGATA +
Preference number: 2 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSLNLTK*LSQWVI
Trigger: TATCACCCATTGTGAGAGTCACTTGGTCAAATTTAG...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp CCTGCTACCAGTTTTTACTGTGACCACTCCTGCTGTGTACATGATTCAACTAGAATATGTTTAAAACCCTaGCTAGACCTGTGTGTGAAT +
Preference number: 2 (lower is better)
Translates to: PATSFYCDHSCCVHDSTRICLKP*LDLCVN
Trigger: ATTCACACACAGGTCTAGGCAGGGTTTTAAACATAT...TCTAGTTGAATCATGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTAGCAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTTCCCCATTAAGTACTTaGCCTGATTTCAGGGCATTT +
Preference number: 2 (lower is better)
Translates to: VRLEQPRELCALYFKMVFSPLST*PDFRAF
Trigger: AAATGCCCTGAAATCAGGGCAAGTACTTAATGGGGA...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACGGCAGAAATCCTTACTaGACAGACAGACAGTCAGTA +
Preference number: 2 (lower is better)
Translates to: TSMITYQLADNPHLSGPDGRNPY*TDRQSV
Trigger: TACTGACTGTCTGTCTGTCCAGTAAGGATTTCTGCC...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTATGAATACCAACAACTaGGGAGGAGGTAGTGTTAAT +
Preference number: 2 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSMNTNN*GGGSVN
Trigger: ATTAACACTACCTCCTCCCCAGTTGTTGGTATTCAT...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACAAACCTCCAAAAGAATaGGTTGCTGTGGCTATAGGC +
Preference number: 2 (lower is better)
Translates to: TSMITYQLADNPHLSGPDKPPKE*VAVAIG
Trigger: GCCTATAGCCACAGCAACCCATTCTTTTGGAGGTTT...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTGGCTCTAATATACCTTaGATACTAAGCCAAGCCATG +
Preference number: 2 (lower is better)
Translates to: VRLEQPRELCALYFKMVFGSNIP*ILSQAM
Trigger: CATGGCTTGGCTTAGTATCCAAGGTATATTAGAGCC...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CAA 90 bp CAATACCTCTGGCATTTGCTTTGTGTTGGCTATAGGTCTTCATTTTaGTACAAACAAAGCAAAGGTACTGTTTGGAGTCTCAAGTTTGGG +
Preference number: 2 (lower is better)
Translates to: QYLWHLLCVGYRSSF*YKQSKGTVWSLKFG
Trigger: CCCAAACTTGAGACTCCAAACAGTACCTTTGCTTTGTTTGTACAAAAATGAAGACCTATAGCCAACACAAAGCAAATGCCAGAGGTATTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTCACAGAACTGGAATATaGAGGAAGGCTTTAGATCTT +
Preference number: 2 (lower is better)
Translates to: VRLEQPRELCALYFKMVFHRTGI*RKALDL
Trigger: AAGATCTAAAGCCTTCCTTCATATTCCAGTTCTGTG...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACTACCAGTTTTTACTGTaGCCACTCCTGCTGTGTACA +
Preference number: 2 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYYQFLL*PLLLCT
Trigger: TGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTA...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACGACAAAATCTCTGCTTaGATAGTAGTGGCTCAGAAG +
Preference number: 2 (lower is better)
Translates to: TSMITYQLADNPHLSGPDDKISA*IVVAQK
Trigger: CTTCTGAGCCACTACTATTCAAGCAGAGATTTTGTC...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACTTCAAACCTGACCAATaGTTAAGCTCCATGTCCCCA +
Preference number: 2 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYFKPDQ*LSSMSP
Trigger: TGGGGACATGGAGCTTAATCATTGGTCAGGTTTGAA...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp ACAAATGGAGAAATGCAAAGGTGTTCAAGTACAATGAAGTCATTTTTACAGGTGCATGGAAAAACTGGGTaGCACACAATTAGATGGGGG +
Preference number: 2 (lower is better)
Translates to: TNGEMQRCSSTMKSFLQVHGKTG*HTIRWG
Trigger: CCCCCATCTAATTGTGTGGCACCCAGTTTTTCCATG...CACCTGTAAAAATGACTTCATTGTACTTGAACACCTTTGCATTTCTCCATTTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTACCAGTGATCATCTCCTaGTCATCTTACAGTTTAGGA +
Preference number: 2 (lower is better)
Translates to: LIYPVGILLERINLFLYLPVIIS*SSYSLG
Trigger: TCCTAAACTGTAAGATGAGCAGGAGATGATCACTGG...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTAAGGGACTCACAGAACTaGAATATGAAGGAAGGCTTT +
Preference number: 2 (lower is better)
Translates to: LIYPVGILLERINLFLYLRDSQN*NMKEGF
Trigger: AAAGCCTTCCTTCATATTCCAGTTCTGTGAGTCCCT...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTACTTATACAAAACCTCTaGTCTCTCACTAAAGAGGGC +
Preference number: 2 (lower is better)
Translates to: LIYPVGILLERINLFLYLLIQNL*SLTKEG
Trigger: GCCCTCTTTAGTGAGAGACCAGAGGTTTTGTATAAG...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTATTCCCTGTCAGGTTCTaGATACCAGATATAGGTCTA +
Preference number: 2 (lower is better)
Translates to: LIYPVGILLERINLFLYLFPVRF*IPDIGL
Trigger: TAGACCTATATCTGGTATCCAGAACCTGACAGGGAA...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTAAATGTCACCTAGGATaGTTTCAGGGTTGTATGCTA +
Preference number: 2 (lower is better)
Translates to: VRLEQPRELCALYFKMVFKCHLG*FQGCML
Trigger: TAGCATACAACCCTGAAACCATCCTAGGTGACATTT...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTACACAGAACTGGAATATaGAGGAAGGCTTTAGATCTT +
Preference number: 2 (lower is better)
Translates to: LIYPVGILLERINLFLYLHRTGI*RKALDL
Trigger: AAGATCTAAAGCCTTCCTTCATATTCCAGTTCTGTG...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp CTTTGTGTTGGCTATAGGTCTTCATTTTTGTACAAACAAAGCAAAGGTACTGTTCTAGTTTTTCCCCTCTaGAAGCTCACAGGCTTGTTA +
Preference number: 2 (lower is better)
Translates to: LCVGYRSSFLYKQSKGTVLVFPL*KLTGLL
Trigger: TAACAAGCCTGTGAGCTTTCAGAGGGGAAAAACTAG...AACAGTACCTTTGCTTTGTTTGTACAAAAATGAAGACCTATAGCCAACACAAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACCAGAGGACCTGTAAATaGAGCAATAACTACAGTGTG +
Preference number: 2 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYQRTCK*SNNYSV
Trigger: CACACTGTAGTTATTGCTTCATTTACAGGTCCTCTG...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATAATGTCAGAAACTTCTaGAGGGGGTACGTCATGGAA +
Preference number: 2 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYNVRNF*RGYVME
Trigger: TTCCATGACGTACCCCCTTCAGAAGTTTCTGACATT...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTACACACATATAATGAATaGATACCAACAACTGGGGAG +
Preference number: 2 (lower is better)
Translates to: LIYPVGILLERINLFLYLHTYNE*IPTTGE
Trigger: CTCCCCAGTTGTTGGTATTCATTCATTATATGTGTG...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACTGTAATCCCAGTACTTaGGAGGCTTACAGAAAGATT +
Preference number: 2 (lower is better)
Translates to: TSMITYQLADNPHLSGPDCNPST*EAYRKI
Trigger: AATCTTTCTGTAAGCCTCTCAAGTACTGGGATTACA...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTTTCACATTCGGAACATaGGACAAATGGAGAACTATA +
Preference number: 2 (lower is better)
Translates to: VRLEQPRELCALYFKMVFFTFGT*DKWRTI
Trigger: TATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAA...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTTCATTTCTAAACCACTaGCTTCAAAGTTGCCATAGA +
Preference number: 2 (lower is better)
Translates to: VRLEQPRELCALYFKMVFSFLNH*LQSCHR
Trigger: TCTATGGCAACTTTGAAGTCAGTGGTTTAGAAATGA...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp ACAAATGGAGAAATGCAAAGGTGTTCAAGTACAATGAAGTCATTTTTACAGGTGACTAAAGAGGGCATTTaGCCTAGTCTACCACCAACT +
Preference number: 2 (lower is better)
Translates to: TNGEMQRCSSTMKSFLQVTKEGI*PSLPPT
Trigger: AGTTGGTGGTAGACTAGGGCAAATGCCCTCTTTAGT...CACCTGTAAAAATGACTTCATTGTACTTGAACACCTTTGCATTTCTCCATTTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp ACAAATGGAGAAATGCAAAGGTGTTCAAGTACAATGAAGTCATTTTTACAGGTGCTAGATATGGAAATGTaGAGAAGAGCAGGAGCTCCT +
Preference number: 2 (lower is better)
Translates to: TNGEMQRCSSTMKSFLQVLDMEM*RRAGAP
Trigger: AGGAGCTCCTGCTCTTCTGCACATTTCCATATCTAG...CACCTGTAAAAATGACTTCATTGTACTTGAACACCTTTGCATTTCTCCATTTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTGGCTTTCTTAACCTTTaGAGAACAATTATTACCAGT +
Preference number: 2 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSGFLNL*RTIITS
Trigger: ACTGGTAATAATTGTTCTGCAAAGGTTAAGAAAGCC...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTATTAGACAAAATCTCTaGTTGAATAGTAGTGGCTCA +
Preference number: 2 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSIRQNL*LNSSGS
Trigger: TGAGCCACTACTATTCAAGCAGAGATTTTGTCTAAT...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp ACAAATGGAGAAATGCAAAGGTGTTCAAGTACAATGAAGTCATTTTTACAGGTGGTACGTCATGGAAACTaGACTGACATACCTGGACAA +
Preference number: 2 (lower is better)
Translates to: TNGEMQRCSSTMKSFLQVVRHGN*TDIPGQ
Trigger: TTGTCCAGGTATGTCAGTCCAGTTTCCATGACGTAC...CACCTGTAAAAATGACTTCATTGTACTTGAACACCTTTGCATTTCTCCATTTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACCTGCCTCCTAAATGCTaGGATTATAGGCATTTGCTA +
Preference number: 2 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYLPPKC*DYRHLL
Trigger: TAGCAAATGCCTATAATCCCAGCATTTAGGAGGCAG...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATGGCAGAAATCCTTACTaGACAGACAGACAGTCAGTA +
Preference number: 2 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYGRNPY*TDRQSV
Trigger: TACTGACTGTCTGTCTGTCCAGTAAGGATTTCTGCC...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATAACATGGGGTGGGAGTaGGGCAAGAACAATAAAACT +
Preference number: 2 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYNMGWE*GKNNKT
Trigger: AGTTTTATTGTTCTTGCCCCACTCCCACCCCATGTT...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTCTGTTTCCATATAACTaGTCTTCATGCTTTCAAGTG +
Preference number: 2 (lower is better)
Translates to: VRLEQPRELCALYFKMVFLFPYN*SSCFQV
Trigger: CACTTGAAAGCATGAAGACCAGTTATATGGAAACAG...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CAA 90 bp AGTTCAAATATGGCATCATCCAATACCTCTGGCATTTGCTTTGTGTaGGCTATAGGTCTTCATTTTTGTACAAACAAAGCAAAGGTACTG +
Preference number: 2 (lower is better)
Translates to: SSNMASSNTSGICFV*AIGLHFCTNKAKVL
Trigger: CAGTACCTTTGCTTTGTTTGTACAAAAATGAAGACCTATAGCCAACACAAAGCAAATGCCAGAGGTATTGGATGATGCCATATTTGAACT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CAA 90 bp AATAGATGGCAGTTCAAATATGGCATCATCCAATACCTCTGGCATTaGCTTTGTGTTGGCTATAGGTCTTCATTTTTGTACAAACAAAGC +
Preference number: 2 (lower is better)
Translates to: NRWQFKYGIIQYLWH*LCVGYRSSFLYKQS
Trigger: GCTTTGTTTGTACAAAAATGAAGACCTATAGCCAACACAAAGCAAATGCCAGAGGTATTGGATGATGCCATATTTGAACTGCCATCTATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTATTCACATTCGGAACATaGGACAAATGGAGAACTATA +
Preference number: 2 (lower is better)
Translates to: LIYPVGILLERINLFLYLFTFGT*DKWRTI
Trigger: TATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAA...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR TCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACAAAAGACTTCAAACCTaGCCAATGATTAAGCTCCAT +
Preference number: 2 (lower is better)
Translates to: TSMITYQLADNPHLSGPDKRLQT*PMIKLH
Trigger: ATGGAGCTTAATCATTGGTCAGGTTTGAAGTCTTTT...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATTCCCCATTAAGTACTTaGCCTGATTTCAGGGCATTT +
Preference number: 2 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYSPLST*PDFRAF
Trigger: AAATGCCCTGAAATCAGGGCAAGTACTTAATGGGGA...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTCCTAGCACAGTTTACTaGACTGTAATTTATAGTTTC +
Preference number: 2 (lower is better)
Translates to: VRLEQPRELCALYFKMVFPSTVY*TVIYSF
Trigger: GAAACTATAAATTACAGTGCAGTAAACTGTGCTAGG...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp ACAAATGGAGAAATGCAAAGGTGTTCAAGTACAATGAAGTCATTTTTACAGGTGATCATCCAATACCTCTaGCATTTGCTTTGTGTTGGC +
Preference number: 2 (lower is better)
Translates to: TNGEMQRCSSTMKSFLQVIIQYL*HLLCVG
Trigger: GCCAACACAAAGCAAATGCCAGAGGTATTGGATGAT...CACCTGTAAAAATGACTTCATTGTACTTGAACACCTTTGCATTTCTCCATTTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTATGTAAATGGCACAAATaGAGAAATGCAAAGGTGTTC +
Preference number: 2 (lower is better)
Translates to: LIYPVGILLERINLFLYLCKWHK*RNAKVF
Trigger: GAACACCTTTGCATTTCTCCATTTGTGCCATTTACA...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTATTATTTTTGCATGGATaGGCAGTGCAAGTTTCAGAA +
Preference number: 2 (lower is better)
Translates to: LIYPVGILLERINLFLYLLFLHG*AVQVSE
Trigger: TTCTGAAACTTGCACTGCCCATCCATGCAAAAATAA...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CAA 90 bp TGTGCAATTTATATTAACAATAATGTTCATGCCGAGGCAATGTATTaGAGGGCTAAGAAAAAGCAAAATGTGCCACTGAGAGAAACCTGT +
Preference number: 2 (lower is better)
Translates to: CAIYINNNVHAEAMY*RAKKKQNVPLRETC
Trigger: ACAGGTTTCTCTCAGTGGCACATTTTGCTTTTTCTTAGCCCTCAAATACATTGCCTCGGCATGAACATTATTGTTAATATAAATTGCACA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACTGCATATATTGGATCTaGTTTCTCAATCTAACCTTC +
Preference number: 2 (lower is better)
Translates to: TSMITYQLADNPHLSGPDCIYWI*FLNLTF
Trigger: GAAGGTTAGATTGAGAAAGCAGATCCAATATATGCA...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATAGAAGGGGTAGAAGGTaGATAAAGAACTTGCAACTA +
Preference number: 2 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYRRGRR*IKNLQL
Trigger: TAGTTGCAAGTTCTTTATGCACCTTCTACCCCTTCT...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTACACTTCAGTTTAGATTaGAGGAAACAGTTAACAGAT +
Preference number: 2 (lower is better)
Translates to: LIYPVGILLERINLFLYLHFSLD*RKQLTD
Trigger: ATCTGTTAACTGTTTCCTGCAATCTAAACTGAAGTG...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACTATAACTGGTCTTCATaGTTTCAAGTGGCTCTAATA +
Preference number: 2 (lower is better)
Translates to: TSMITYQLADNPHLSGPDYNWSS*FQVALI
Trigger: TATTAGAGCCACTTGAAAGCATGAAGACCAGTTATA...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATATGGCAGTTCAAATATaGCATCATCCAATACCTCTG +
Preference number: 2 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYMAVQI*HHPIPL
Trigger: CAGAGGTATTGGATGATGCCATATTTGAACTGCCAT...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACATTGATGAAGAACACTaGATTGATCCTTCATTGAAG +
Preference number: 2 (lower is better)
Translates to: TSMITYQLADNPHLSGPDIDEEH*IDPSLK
Trigger: CTTCAATGAAGGATCAATCCAGTGTTCTTCATCAAT...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACAGGCCAGCACTTGTTTaGAAATCTGAATATAATCAA +
Preference number: 2 (lower is better)
Translates to: TSMITYQLADNPHLSGPDRPALV*KSEYNQ
Trigger: TTGATTATATTCAGATTTCCAAACAAGTGCTGGCCT...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CAA 90 bp ACTCTAAACATCGAAAGGACCGGGTTTACTCATAATTATCCACTGTaGAGAGTATTGGGATACTACATGTTCAATATGATAATCTTTTGC +
Preference number: 2 (lower is better)
Translates to: TLNIERTGFTHNYPL*RVLGYYMFNMIIFC
Trigger: GCAAAAGATTATCATATTGAACATGTAGTATCCCAATACTCTCAACAGTGGATAATTATGAGTAAACCCGGTCCTTTCGATGTTTAGAGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACTGCATATATTGGATCTaGTTTCTCAATCTAACCTTC +
Preference number: 2 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYCIYWI*FLNLTF
Trigger: GAAGGTTAGATTGAGAAAGCAGATCCAATATATGCA...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACATTACCAGTGTTCTTTaGAGAGTTTACTTTTCTCTG +
Preference number: 2 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYITSVL*RVYFSL
Trigger: CAGAGAAAAGTAAACTCTGCAAAGAACACTGGTAAT...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATTGTAAATGGCACAAATaGAGAAATGCAAAGGTGTTC +
Preference number: 2 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYCKWHK*RNAKVF
Trigger: GAACACCTTTGCATTTCTCCATTTGTGCCATTTACA...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATCCTAGCACAGTTTACTaGACTGTAATTTATAGTTTC +
Preference number: 2 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYPSTVY*TVIYSF
Trigger: GAAACTATAAATTACAGTGCAGTAAACTGTGCTAGG...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR GCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATATTACCAGTGTTCTTTaGAGAGTTTACTTTTCTCTG +
Preference number: 2 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYITSVL*RVYFSL
Trigger: CAGAGAAAAGTAAACTCTGCAAAGAACACTGGTAAT...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CCA 90 bp ACAAATGGAGAAATGCAAAGGTGTTCAAGTACAATGAAGTCATTTTTACAGGTGATTGATGAAGAACACTaGATTGATCCTTCATTGAAG +
Preference number: 2 (lower is better)
Translates to: TNGEMQRCSSTMKSFLQVIDEEH*IDPSLK
Trigger: CTTCAATGAAGGATCAATCCAGTGTTCTTCATCAAT...CACCTGTAAAAATGACTTCATTGTACTTGAACACCTTTGCATTTCTCCATTTGT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR TCA 72 bp GTCAGGCTAGCTATACAGGCTTTCCCTCCTCCCTGCTaGGCATCCCTGTCACAGGAACTTTCAGGGGCCCCT +
Preference number: 3 (lower is better)
Translates to: VRLAIQAFPPPC*ASLSQELSGAP
Trigger: AGGGGCCCCTGAAAGTTCCTGTGACAGGGATGCTCAGCAGGGAGGAGGGAAAGCCTGTATAGCTAGCCTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CCA 72 bp CCACTGGTGAGGAGCGGAGGTGTATGTGCTTCAGCATaGATGCTGCCTGCTGTTAGGGACTCACAGAACTGG +
Preference number: 3 (lower is better)
Translates to: PLVRSGGVCASA*MLPAVRDSQNW
Trigger: CCAGTTCTGTGAGTCCCTAACAGCAGGCAGCATCCATGCTGAAGCACATACACCTCCGCTCCTCACCAGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR TCA 72 bp GAGTATGAAGTGAAGGAAGGACAGCAGCACATGGAGTaGATGGGCAGCAAGACAACAGCGTGGCAATACCCC +
Preference number: 3 (lower is better)
Translates to: EYEVKEGQQHME*MGSKTTAWQYP
Trigger: GGGGTATTGCCACGCTGTTGTCTTGCTGCCCATTCACTCCATGTGCTGCTGTCCTTCCTTCACTTCATACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR TCA 72 bp TACCATATGCACAGCTTCCACACGGTAGTACCCAAGTaGGGAGGCTGCTGTGATGATGTCTGTAGGCAGTTT +
Preference number: 3 (lower is better)
Translates to: YHMHSFHTVVPK*GGCCDDVCRQF
Trigger: AAACTGCCTACAGACATCATCACAGCAGCCTCCTCACTTGGGTACTACCGTGTGGAAGCTGTGCATATGGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR GCA 72 bp ATACAAAACCTCTGGTCTCTCACTAAAGAGGGCATTTaGCCTAGTCTACCACCAACTCAAGGCGCCACACAA +
Preference number: 3 (lower is better)
Translates to: IQNLWSLTKEGI*PSLPPTQGATQ
Trigger: TTGTGTGGCGCCTTGAGTTGGTGGTAGACTAGGGCAAATGCCCTCTTTAGTGAGAGACCAGAGGTTTTGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR GCA 72 bp GCCTTGAACCTGAGATTCCTATCCCTGCCTCCTAAATaGTGGGATTATAGGCATTTGCTACCACACCCTGAT +
Preference number: 3 (lower is better)
Translates to: ALNLRFLSLPPK*WDYRHLLPHPD
Trigger: ATCAGGGTGTGGTAGCAAATGCCTATAATCCCAGCATTTAGGAGGCAGGGATAGGAATCTCAGGTTCAAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CCA 72 bp GACCTACATGGAAAAACTGGGTGCCACACAATTAGATaGGGGCAGAAATCCTTACTGGACAGACAGACAGTC +
Preference number: 3 (lower is better)
Translates to: DLHGKTGCHTIR*GQKSLLDRQTV
Trigger: GACTGTCTGTCTGTCCAGTAAGGATTTCTGCCCCCATCTAATTGTGTGGCACCCAGTTTTTCCATGTAGGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CCA 72 bp AAAAGGGGGACCAAGAACTGTTTCCCTGTCAGGTTCTaGATACCAGATATAGGTCTACAACCTCTGGTGTGC +
Preference number: 3 (lower is better)
Translates to: KRGTKNCFPVRF*IPDIGLQPLVC
Trigger: GCACACCAGAGGTTGTAGACCTATATCTGGTATCCAGAACCTGACAGGGAAACAGTTCTTGGTCCCCCTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CAA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTTGTAAACATGGCCACTaGGGGAGGGAGACTCCCTAC +
Preference number: 3 (lower is better)
Translates to: VRLEQPRELCALYFKMVFCKHGH*GRETPY
Trigger: GTAGGGAGTCTCCCTCCCCAAGTGGCCATGTTTACA...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CCA 72 bp GAGTACTCACTCTGTAAGACCAGTCTTGCTGTAACATaGGGTGGGAGTGGGGCAAGAACAATAAAACTTGAG +
Preference number: 3 (lower is better)
Translates to: EYSLCKTSLAVT*GGSGARTIKLE
Trigger: CTCAAGTTTTATTGTTCTTGCCCCACTCCCACCCCATGTTACAGCAAGACTGGTCTTACAGAGTGAGTACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CAA 90 bp GTACTTGCCCTGATTTCAGGGCATTTCAAACCCTTTCAAATTTTCCTGCTACCATGTAGGCAGTTTCTTTaGGCAGACAGCTCCAGAGGA +
Preference number: 3 (lower is better)
Translates to: VLALISGHFKPFQIFLLPCRQFL*ADSSRG
Trigger: TCCTCTGGAGCTGTCTGCCAAAAGAAACTGCCTACA...TGGTAGCAGGAAAATTTGAAAGGGTTTGAAATGCCCTGAAATCAGGGCAAGTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CCA 72 bp TGTCAGAAACTTCTGAAGGGGGTACGTCATGGAAACTaGACTGACATACCTGGACAAGACATAAAGCATGGT +
Preference number: 3 (lower is better)
Translates to: CQKLLKGVRHGN*TDIPGQDIKHG
Trigger: ACCATGCTTTATGTCTTGTCCAGGTATGTCAGTCCAGTTTCCATGACGTACCCCCTTCAGAAGTTTCTGACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CCA 72 bp GGTGCCACACAATTAGATGGGGGCAGAAATCCTTACTaGACAGACAGACAGTCAGTATTCAAACACACTAGT +
Preference number: 3 (lower is better)
Translates to: GATQLDGGRNPY*TDRQSVFKHTS
Trigger: ACTAGTGTGTTTGAATACTGACTGTCTGTCTGTCCAGTAAGGATTTCTGCCCCCATCTAATTGTGTGGCACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR GCA 72 bp TCATCCAGGTATAATGACCTACATGGAAAAACTGGGTaGCACACAATTAGATGGGGGCAGAAATCCTTACTG +
Preference number: 3 (lower is better)
Translates to: SSRYNDLHGKTG*HTIRWGQKSLL
Trigger: CAGTAAGGATTTCTGCCCCCATCTAATTGTGTGGCACCCAGTTTTTCCATGTAGGTCATTATACCTGGATGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CAA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTCACATCCCTCCTCACTaGGGTTTTACTCTACGAAAC +
Preference number: 3 (lower is better)
Translates to: VRLEQPRELCALYFKMVFHIPPH*GFTLRN
Trigger: GTTTCGTAGAGTAAAACCCAAGTGAGGAGGGATGTG...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CAA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTTGGGATTATAGGCATTaGCTACCACACCCTGATCTA +
Preference number: 3 (lower is better)
Translates to: VRLEQPRELCALYFKMVFWDYRH*LPHPDL
Trigger: TAGATCAGGGTGTGGTAGCAAATGCCTATAATCCCA...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CAA 90 bp ACCTCTGGTGTGCTACAAGCTCGCCATGCTCTCATCCTGTTAAACACACATATAGTTTCTGGTAGTAGTTaGGAGTTTGAAGAAATGTCT +
Preference number: 3 (lower is better)
Translates to: TSGVLQARHALILLNTHIVSGSS*EFEEMS
Trigger: AGACATTTCTTCAAACTCCAAACTACTACCAGAAAC...TATATGTGTGTTTAACAGGATGAGAGCATGGCGAGCTTGTAGCACACCAGAGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CAA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTCCCTTCTTGGCAGTTTaGATACTCAGTGAAACACAT +
Preference number: 3 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSPFLAV*ILSETH
Trigger: ATGTGTTTCACTGAGTATCAAAACTGCCAAGAAGGG...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CCA 72 bp CTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTaGATACTAAGCCAAGCCATGCAAAAGCAAAGAGTA +
Preference number: 3 (lower is better)
Translates to: LVFMLSSGSNIP*ILSQAMQKQRV
Trigger: TACTCTTTGCTTTTGCATGGCTTGGCTTAGTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CAA 90 bp ACAAATGGAGAAATGCAAAGGTGTTCAAGTACAATGAAGTCATTTTTACAGGTGTGTAGGCAGTTTCTTTaGGCAGACAGCTCCAGAGGA +
Preference number: 3 (lower is better)
Translates to: TNGEMQRCSSTMKSFLQVCRQFL*ADSSRG
Trigger: TCCTCTGGAGCTGTCTGCCAAAAGAAACTGCCTACA...CACCTGTAAAAATGACTTCATTGTACTTGAACACCTTTGCATTTCTCCATTTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CAA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTATTTTGAGGCCAGCCTaGGCTAAACATCAATTATCC +
Preference number: 3 (lower is better)
Translates to: VRLEQPRELCALYFKMVFILRPA*AKHQLS
Trigger: GGATAATTGATGTTTAGCCAAGGCTGGCCTCAAAAT...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CAA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTTCTGAAGGCCAGCACTaGTTTGGAAATCTGAATATA +
Preference number: 3 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSSEGQH*FGNLNI
Trigger: TATATTCAGATTTCCAAACAAGTGCTGGCCTTCAGA...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CAA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTTTTGGAGTCTCAAGTTaGGGTCACATGAGATATTGT +
Preference number: 3 (lower is better)
Translates to: VRLEQPRELCALYFKMVFFGVSS*GHMRYC
Trigger: ACAATATCTCATGTGACCCAAACTTGAGACTCCAAA...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
40% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CAA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTTGCTTTCAGCTAACATaGTTTATACAGTGCAAACAC +
Preference number: 3 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSCFQLT*FIQCKH
Trigger: GTGTTTGCACTGTATAAACAATGTTAGCTGAAAGCA...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CAA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTAGACAAAATCTCTGCTaGAATAGTAGTGGCTCAGAA +
Preference number: 3 (lower is better)
Translates to: VRLEQPRELCALYFKMVFRQNLC*NSSGSE
Trigger: TTCTGAGCCACTACTATTCAAGCAGAGATTTTGTCT...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR TCA 72 bp GACCCAAAGTTAGTAGCAAGAGCTCTTCAAGACAACTaGAAAGGGAGCAGGACAATAACTTATACAAAACCT +
Preference number: 3 (lower is better)
Translates to: DPKLVARALQDN*KGSRTITYTKP
Trigger: AGGTTTTGTATAAGTTATTGTCCTGCTCCCTTTTCAGTTGTCTTGAAGAGCTCTTGCTACTAACTTTGGGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CCA 72 bp AGATGGCAGTTCAAATATGGCATCATCCAATACCTCTaGCATTTGCTTTGTGTTGGCTATAGGTCTTCATTT +
Preference number: 3 (lower is better)
Translates to: RWQFKYGIIQYL*HLLCVGYRSSF
Trigger: AAATGAAGACCTATAGCCAACACAAAGCAAATGCCAGAGGTATTGGATGATGCCATATTTGAACTGCCATCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CAA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATTGGGATTATAGGCATTaGCTACCACACCCTGATCTA +
Preference number: 3 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYWDYRH*LPHPDL
Trigger: TAGATCAGGGTGTGGTAGCAAATGCCTATAATCCCA...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CAA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACAGACAAAATCTCTGCTaGAATAGTAGTGGCTCAGAA +
Preference number: 3 (lower is better)
Translates to: TSMITYQLADNPHLSGPDRQNLC*NSSGSE
Trigger: TTCTGAGCCACTACTATTCAAGCAGAGATTTTGTCT...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR TCA 72 bp CTGCCTTATGATCTGAAAGTTTCCAATGTTTGGAAGTaGTGTACAGAAAACTTCTTAGTAGCAGGATGGGAT +
Preference number: 3 (lower is better)
Translates to: LPYDLKVSNVWK*CTENFLVAGWD
Trigger: ATCCCATCCTGCTACTAAGAAGTTTTCTGTACATCACTTCCAAACATTGGAAACTTTCAGATCATAAGGCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR TCA 72 bp ACAATAAAACTTGAGCCCTGGCAGACACGTTTAGAATaGGTTATACCAATCCATCTATACACACATACAGAC +
Preference number: 3 (lower is better)
Translates to: TIKLEPWQTRLE*VIPIHLYTHTD
Trigger: GTCTGTATGTGTGTATAGATGGATTGGTATAACTCATTCTAAACGTGTCTGCCAGGGCTCAAGTTTTATTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR TCA 72 bp AAGGGCTACAAGGGTTCCAATACCTACACTGTTATTTaGGATAGAGACCAACTAAAACTGTTAATATTGGGC +
Preference number: 3 (lower is better)
Translates to: KGYKGSNTYTVI*DRDQLKLLILG
Trigger: GCCCAATATTAACAGTTTTAGTTGGTCTCTATCTCAAATAACAGTGTAGGTATTGGAACCCTTGTAGCCCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CAA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTATGGATTGATCCTTCATaGAAGAACAGACAAAACACA +
Preference number: 3 (lower is better)
Translates to: LIYPVGILLERINLFLYLWIDPS*KNRQNT
Trigger: TGTGTTTTGTCTGTTCTTCAATGAAGGATCAATCCA...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CAA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACTGCTTTCAGCTAACATaGTTTATACAGTGCAAACAC +
Preference number: 3 (lower is better)
Translates to: TSMITYQLADNPHLSGPDCFQLT*FIQCKH
Trigger: GTGTTTGCACTGTATAAACAATGTTAGCTGAAAGCA...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CAA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATCCCTTCTTGGCAGTTTaGATACTCAGTGAAACACAT +
Preference number: 3 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYPFLAV*ILSETH
Trigger: ATGTGTTTCACTGAGTATCAAAACTGCCAAGAAGGG...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CAA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACTTAAGATACTTATTTTaGCATGGATGGGCAGTGCAA +
Preference number: 3 (lower is better)
Translates to: TSMITYQLADNPHLSGPDLRYLF*HGWAVQ
Trigger: TTGCACTGCCCATCCATGCAAAAATAAGTATCTTAA...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR GCA 72 bp AGTTCAAATATGGCATCATCCAATACCTCTGGCATTTaGTTTGTGTTGGCTATAGGTCTTCATTTTTGTACA +
Preference number: 3 (lower is better)
Translates to: SSNMASSNTSGI*FVLAIGLHFCT
Trigger: TGTACAAAAATGAAGACCTATAGCCAACACAAAGCAAATGCCAGAGGTATTGGATGATGCCATATTTGAACT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CAA 90 bp ACAAATGGAGAAATGCAAAGGTGTTCAAGTACAATGAAGTCATTTTTACAGGTGTTTGGAGTCTCAAGTTaGGGTCACATGAGATATTGT +
Preference number: 3 (lower is better)
Translates to: TNGEMQRCSSTMKSFLQVFGVSS*GHMRYC
Trigger: ACAATATCTCATGTGACCCAAACTTGAGACTCCAAA...CACCTGTAAAAATGACTTCATTGTACTTGAACACCTTTGCATTTCTCCATTTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CAA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACTTAAGATACTTATTTTaGCATGGATGGGCAGTGCAA +
Preference number: 3 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYLRYLF*HGWAVQ
Trigger: TTGCACTGCCCATCCATGCAAAAATAAGTATCTTAA...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR-3UTR CAA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATGTTTCTGGTAGTAGTTaGGAGTTTGAAGAAATGTCT +
Preference number: 3 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYVSGSS*EFEEMS
Trigger: AGACATTTCTTCAAACTCCAAACTACTACCAGAAAC...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR TCA 72 bp CTAACATTGATGAAGAACACTGGATTGATCCTTCATTaGAGAACAGACAAAACACACTCCCCAAATATTAGT +
Preference number: 3 (lower is better)
Translates to: LTLMKNTGLILH*RTDKTHSPNIS
Trigger: ACTAATATTTGGGGAGTGTGTTTTGTCTGTTCTTCAATGAAGGATCAATCCAGTGTTCTTCATCAATGTTAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR TCA 72 bp CAGTTTAGGAACCTTAGTTACCCTTCTTGGCAGTTTTaGTACTCAGTGAAACACATAAGCATTAGTATTAAG +
Preference number: 3 (lower is better)
Translates to: QFRNLSYPSWQF*YSVKHISISIK
Trigger: CTTAATACTAATGCTTATGTGTTTCACTGAGTATCAAAACTGCCAAGAAGGGTAACTAAGGTTCCTAAACTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR TCA 72 bp CCTTCACCAAAGGGAACTAGAAATGTACAAATTCATTaGCGAACCTCAATGATAACATATCAGTTAGCTGAT +
Preference number: 3 (lower is better)
Translates to: PSPKGTRNVQIH*RTSMITYQLAD
Trigger: ATCAGCTAACTGATATGTTATCATTGAGGTTCGTCAATGAATTTGTACATTTCTAGTTCCCTTTGGTGAAGG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CCA 72 bp TCTTCATTTTTGTACAAACAAAGCAAAGGTACTGTTTaGAGTCTCAAGTTTGGGTCACATGAGATATTGTAC +
Preference number: 3 (lower is better)
Translates to: SSFLYKQSKGTV*SLKFGSHEILY
Trigger: GTACAATATCTCATGTGACCCAAACTTGAGACTCCAAACAGTACCTTTGCTTTGTTTGTACAAAAATGAAGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CCA 72 bp AGCAATGGGATATTAACTAACATTGATGAAGAACACTaGATTGATCCTTCATTGAAGAACAGACAAAACACA +
Preference number: 3 (lower is better)
Translates to: SNGILTNIDEEH*IDPSLKNRQNT
Trigger: TGTGTTTTGTCTGTTCTTCAATGAAGGATCAATCCAGTGTTCTTCATCAATGTTAGTTAATATCCCATTGCT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp ACCTCTGGTGTGCTACAAGCTCGCCATGCTCTCATCCTGTTAAACACACATATACCCTTGCATTGGCCCTaGGGGATGACCCCATGGTTG +
Preference number: 4 (lower is better)
Translates to: TSGVLQARHALILLNTHIPLHWP*GMTPWL
Trigger: CAACCATGGGGTCATCCCTCAGGGCCAATGCAAGGG...TATATGTGTGTTTAACAGGATGAGAGCATGGCGAGCTTGTAGCACACCAGAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTGTCCGCCTCAAAGCCTaGGGGCTATTGCGGACTCCC +
Preference number: 4 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSVRLKA*GLLRTP
Trigger: GGGAGTCCGCAATAGCCCCCAGGCTTTGAGGCGGAC...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTCCCTTGCATTGGCCCTaGGGGATGACCCCATGGTTG +
Preference number: 4 (lower is better)
Translates to: VRLEQPRELCALYFKMVFPLHWP*GMTPWL
Trigger: CAACCATGGGGTCATCCCTCAGGGCCAATGCAAGGG...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTTCGTGCTTCTGCTCATaGCCTGTTCCGTCCGTCCCC +
Preference number: 4 (lower is better)
Translates to: VRLEQPRELCALYFKMVFSCFCS*PVPSVP
Trigger: GGGGACGGACGGAACAGGGCATGAGCAGAAGCACGA...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTAGTCCGCCTCAAAGCCTaGGGGCTATTGCGGACTCCC +
Preference number: 4 (lower is better)
Translates to: LIYPVGILLERINLFLYLVRLKA*GLLRTP
Trigger: GGGAGTCCGCAATAGCCCCCAGGCTTTGAGGCGGAC...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTCTGGGTAGCTGTGGCTaGATGCCTCAGGGGAGAGAT +
Preference number: 4 (lower is better)
Translates to: VRLEQPRELCALYFKMVFLGSCG*MPQGRD
Trigger: ATCTCTCCCCTGAGGCATTCAGCCACAGCTACCCAG...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACATTGGCCCTGAGGGATaGCCCCATGGTTGGGGTCCA +
Preference number: 4 (lower is better)
Translates to: TSMITYQLADNPHLSGPDIGPEG*PHGWGP
Trigger: TGGACCCCAACCATGGGGTCATCCCTCAGGGCCAAT...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp ACCTCTGGTGTGCTACAAGCTCGCCATGCTCTCATCCTGTTAAACACACATATAAGTTCCTGCTGCAGCTaGATCTTCAGAACCTGGCAT +
Preference number: 4 (lower is better)
Translates to: TSGVLQARHALILLNTHISSCCS*IFRTWH
Trigger: ATGCCAGGTTCTGAAGATGCAGCTGCAGCAGGAACT...TATATGTGTGTTTAACAGGATGAGAGCATGGCGAGCTTGTAGCACACCAGAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTACCCAAGCTTGTGGTGTaGCACCCATGGGATGACCCC +
Preference number: 4 (lower is better)
Translates to: LIYPVGILLERINLFLYLPKLVV*HPWDDP
Trigger: GGGGTCATCCCATGGGTGGCACACCACAAGCTTGGG...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp GTACTTGCCCTGATTTCAGGGCATTTCAAACCCTTTCAAATTTTCCTGCTACCACTGTGCTTCTACCGCTaGCCCATTATGTGCCTCCTG +
Preference number: 4 (lower is better)
Translates to: VLALISGHFKPFQIFLLPLCFYR*PIMCLL
Trigger: CAGGAGGCACATAATGGGCCAGCGGTAGAAGCACAG...TGGTAGCAGGAAAATTTGAAAGGGTTTGAAATGCCCTGAAATCAGGGCAAGTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTGGGAGACTGTGGGTCTaGTGCTCTTGTTCTAGGATC +
Preference number: 4 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSGRLWV*CSCSRI
Trigger: GATCCTAGAACAAGAGCATCAGACCCACAGTCTCCC...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp GTACTTGCCCTGATTTCAGGGCATTTCAAACCCTTTCAAATTTTCCTGCTACCACCCCCAGTAGGATTGTaGGACCAACTAGAAGCTCCT +
Preference number: 4 (lower is better)
Translates to: VLALISGHFKPFQIFLLPPPVGL*DQLEAP
Trigger: AGGAGCTTCTAGTTGGTCTCACAATCCTACTGGGGG...TGGTAGCAGGAAAATTTGAAAGGGTTTGAAATGCCCTGAAATCAGGGCAAGTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTACCACCTTGCATCGGATaGCCCCAAGCTTGTGGTGTG +
Preference number: 4 (lower is better)
Translates to: LIYPVGILLERINLFLYLPPCIG*PQACGV
Trigger: CACACCACAAGCTTGGGGTCATCCGATGCAAGGTGG...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp GTACTTGCCCTGATTTCAGGGCATTTCAAACCCTTTCAAATTTTCCTGCTACCAAGCTCCAGTTCCTGCTaGAGCTGCATCTTCAGAACC +
Preference number: 4 (lower is better)
Translates to: VLALISGHFKPFQIFLLPSSSSC*SCIFRT
Trigger: GGTTCTGAAGATGCAGCTGCAGCAGGAACTGGAGCT...TGGTAGCAGGAAAATTTGAAAGGGTTTGAAATGCCCTGAAATCAGGGCAAGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp GTACTTGCCCTGATTTCAGGGCATTTCAAACCCTTTCAAATTTTCCTGCTACCAGATGTAGGGCGATCTTaGGGGATTTTCTGGAGGCAA +
Preference number: 4 (lower is better)
Translates to: VLALISGHFKPFQIFLLPDVGRS*GIFWRQ
Trigger: TTGCCTCCAGAAAATCCCTCAAGATCGCCCTACATC...TGGTAGCAGGAAAATTTGAAAGGGTTTGAAATGCCCTGAAATCAGGGCAAGTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTGGGAGACTGTGGGTCTaGTGCTCTTGTTCTAGGATC +
Preference number: 4 (lower is better)
Translates to: VRLEQPRELCALYFKMVFGRLWV*CSCSRI
Trigger: GATCCTAGAACAAGAGCATCAGACCCACAGTCTCCC...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp CCTGCTACCAGTTTTTACTGTGACCACTCCTGCTGTGTACATGATTCAACTAGATTTGATGCTGCAGTCTaGTCAACTCACAGCGCATCT +
Preference number: 4 (lower is better)
Translates to: PATSFYCDHSCCVHDSTRFDAAV*STHSAS
Trigger: AGATGCGCTGTGAGTTGATCAGACTGCAGCATCAAA...TCTAGTTGAATCATGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTAGCAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACCTGGGTAGCTGTGGCTaGATGCCTCAGGGGAGAGAT +
Preference number: 4 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYLGSCG*MPQGRD
Trigger: ATCTCTCCCCTGAGGCATTCAGCCACAGCTACCCAG...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTGCATTCTGCTTCCTGTaGTTCATCCAAACGCAGAGC +
Preference number: 4 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSAFCFL*FIQTQS
Trigger: GCTCTGCGTTTGGATGAAGCACAGGAAGCAGAATGC...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTAGCTCCAGTTCCTGCTaGAGCTGCATCTTCAGAACC +
Preference number: 4 (lower is better)
Translates to: VRLEQPRELCALYFKMVFSSSSC*SCIFRT
Trigger: GGTTCTGAAGATGCAGCTGCAGCAGGAACTGGAGCT...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATCCCAAGCTTGTGGTGTaGCACCCATGGGATGACCCC +
Preference number: 4 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYPKLVV*HPWDDP
Trigger: GGGGTCATCCCATGGGTGGCACACCACAAGCTTGGG...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTATGCGGACTCCCATACTaGTACCTCGAGGTACCCCTT +
Preference number: 4 (lower is better)
Translates to: LIYPVGILLERINLFLYLCGLPY*YLEVPL
Trigger: AAGGGGTACCTCGAGGTAGCAGTATGGGAGTCCGCA...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACAAGCCTGGGGGCTATTaGGGACTCCCATACTGCTAC +
Preference number: 4 (lower is better)
Translates to: TSMITYQLADNPHLSGPDKPGGY*GLPYCY
Trigger: GTAGCAGTATGGGAGTCCGCAATAGCCCCCAGGCTT...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp ACAAATGGAGAAATGCAAAGGTGTTCAAGTACAATGAAGTCATTTTTACAGGTGTCGTGCTTCTGCTCATaGCCTGTTCCGTCCGTCCCC +
Preference number: 4 (lower is better)
Translates to: TNGEMQRCSSTMKSFLQVSCFCS*PVPSVP
Trigger: GGGGACGGACGGAACAGGGCATGAGCAGAAGCACGA...CACCTGTAAAAATGACTTCATTGTACTTGAACACCTTTGCATTTCTCCATTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp ACCTCTGGTGTGCTACAAGCTCGCCATGCTCTCATCCTGTTAAACACACATATAACTGCTCAGCCAAGATaGCTAACTTTCGAGTCTGTT +
Preference number: 4 (lower is better)
Translates to: TSGVLQARHALILLNTHITAQPR*LTFESV
Trigger: AACAGACTCGAAAGTTAGCCATCTTGGCTGAGCAGT...TATATGTGTGTTTAACAGGATGAGAGCATGGCGAGCTTGTAGCACACCAGAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp CCTGCTACCAGTTTTTACTGTGACCACTCCTGCTGTGTACATGATTCAACTAGATGCATCTTCAGAACCTaGCATTCTGCTTCCTGTGCT +
Preference number: 4 (lower is better)
Translates to: PATSFYCDHSCCVHDSTRCIFRT*HSASCA
Trigger: AGCACAGGAAGCAGAATGCCAGGTTCTGAAGATGCA...TCTAGTTGAATCATGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTAGCAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACACCCCAGTGAGGTCCTaGACCCCCAGTAGGATTGTG +
Preference number: 4 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYTPVRS*TPSRIV
Trigger: CACAATCCTACTGGGGGTCCAGGACCTCACTGGGGT...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp GTACTTGCCCTGATTTCAGGGCATTTCAAACCCTTTCAAATTTTCCTGCTACCATTTGATGCTGCAGTCTaGTCAACTCACAGCGCATCT +
Preference number: 4 (lower is better)
Translates to: VLALISGHFKPFQIFLLPFDAAV*STHSAS
Trigger: AGATGCGCTGTGAGTTGATCAGACTGCAGCATCAAA...TGGTAGCAGGAAAATTTGAAAGGGTTTGAAATGCCCTGAAATCAGGGCAAGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp ACAAATGGAGAAATGCAAAGGTGTTCAAGTACAATGAAGTCATTTTTACAGGTGCCACCTTGCATCGGATaGCCCCAAGCTTGTGGTGTG +
Preference number: 4 (lower is better)
Translates to: TNGEMQRCSSTMKSFLQVPPCIG*PQACGV
Trigger: CACACCACAAGCTTGGGGTCATCCGATGCAAGGTGG...CACCTGTAAAAATGACTTCATTGTACTTGAACACCTTTGCATTTCTCCATTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp ACCTCTGGTGTGCTACAAGCTCGCCATGCTCTCATCCTGTTAAACACACATATACTAAGTTCAGAGTCCTaGTCATGTTCTTGCATCTGT +
Preference number: 4 (lower is better)
Translates to: TSGVLQARHALILLNTHILSSES*SCSCIC
Trigger: ACAGATGCAAGAACATGAGCAGGACTCTGAACTTAG...TATATGTGTGTTTAACAGGATGAGAGCATGGCGAGCTTGTAGCACACCAGAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTGCATTCTGCTTCCTGTaGTTCATCCAAACGCAGAGC +
Preference number: 4 (lower is better)
Translates to: VRLEQPRELCALYFKMVFAFCFL*FIQTQS
Trigger: GCTCTGCGTTTGGATGAAGCACAGGAAGCAGAATGC...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTAGTTCTAAGAGCGCTCTaGGAAGGGAGACCCTCTGTT +
Preference number: 4 (lower is better)
Translates to: LIYPVGILLERINLFLYLVLRAL*EGRPSV
Trigger: AACAGAGGGTCTCCCTTCGCAGAGCGCTCTTAGAAC...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACTGCGGACTCCCATACTaGTACCTCGAGGTACCCCTT +
Preference number: 4 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYCGLPY*YLEVPL
Trigger: AAGGGGTACCTCGAGGTAGCAGTATGGGAGTCCGCA...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACAAGCCTGGGGGCTATTaGGGACTCCCATACTGCTAC +
Preference number: 4 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYKPGGY*GLPYCY
Trigger: GTAGCAGTATGGGAGTCCGCAATAGCCCCCAGGCTT...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp GTACTTGCCCTGATTTCAGGGCATTTCAAACCCTTTCAAATTTTCCTGCTACCATCAGCAAGTTTCACTTaGCCTGGTTCTGTCAGAAGG +
Preference number: 4 (lower is better)
Translates to: VLALISGHFKPFQIFLLPSASFT*PGSVRR
Trigger: CCTTCTGACAGAACCAGGCCAAGTGAAACTTGCTGA...TGGTAGCAGGAAAATTTGAAAGGGTTTGAAATGCCCTGAAATCAGGGCAAGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACCCAACTAGAAGCTCCTaGGTAGCTGTGGCTGAATGC +
Preference number: 4 (lower is better)
Translates to: TSMITYQLADNPHLSGPDPTRSS*VAVAEC
Trigger: GCATTCAGCCACAGCTACCCAGGAGCTTCTAGTTGG...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATACCCCAGTGAGGTCCTaGACCCCCAGTAGGATTGTG +
Preference number: 4 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYTPVRS*TPSRIV
Trigger: CACAATCCTACTGGGGGTCCAGGACCTCACTGGGGT...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp CCTGCTACCAGTTTTTACTGTGACCACTCCTGCTGTGTACATGATTCAACTAGAGTAGTCTCCAGTAGGTaGTTCCTTAATGCTTTGTAC +
Preference number: 4 (lower is better)
Translates to: PATSFYCDHSCCVHDSTRVVSSR*FLNALY
Trigger: GTACAAAGCATTAAGGAATCACCTACTGGAGACTAC...TCTAGTTGAATCATGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTAGCAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACCGCTGGCCCATTATGTaGCTCCTGGAAAAGGAGTTT +
Preference number: 4 (lower is better)
Translates to: TSMITYQLADNPHLSGPDRWPIM*LLEKEF
Trigger: AAACTCCTTTTCCAGGAGGCACATAATGGGCCAGCG...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACCTCCTCTTCTTCCTGTaGTTCTACCGCTGGCCCATT +
Preference number: 4 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYLLFFL*FYRWPI
Trigger: AATGGGCCAGCGGTAGAAGCACAGGAAGAAGAGGAG...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp CCTGCTACCAGTTTTTACTGTGACCACTCCTGCTGTGTACATGATTCAACTAGACTAAGTTCAGAGTCCTaGTCATGTTCTTGCATCTGT +
Preference number: 4 (lower is better)
Translates to: PATSFYCDHSCCVHDSTRLSSES*SCSCIC
Trigger: ACAGATGCAAGAACATGAGCAGGACTCTGAACTTAG...TCTAGTTGAATCATGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTAGCAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp ACCTCTGGTGTGCTACAAGCTCGCCATGCTCTCATCCTGTTAAACACACATATATGTATATTCTCCTTCTaGTTTGAAAGCCATTCCTGC +
Preference number: 4 (lower is better)
Translates to: TSGVLQARHALILLNTHICIFSF*FESHSC
Trigger: GCAGGAATGGCTTTCAAAGCAGAAGGAGAATATACA...TATATGTGTGTTTAACAGGATGAGAGCATGGCGAGCTTGTAGCACACCAGAGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTCGAAACTCCAGTTCTTaGATTGATTCATGCTGTCGC +
Preference number: 4 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSRNSSS*IDSCCR
Trigger: GCGACAGCATGAATCAATGCAAGAACTGGAGTTTCG...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTAAGTTCCTGCTGCAGCTaGATCTTCAGAACCTGGCAT +
Preference number: 4 (lower is better)
Translates to: LIYPVGILLERINLFLYLSSCCS*IFRTWH
Trigger: ATGCCAGGTTCTGAAGATGCAGCTGCAGCAGGAACT...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp ACCTCTGGTGTGCTACAAGCTCGCCATGCTCTCATCCTGTTAAACACACATATAAAGTTTCACTTGGCCTaGTTCTGTCAGAAGGATATT +
Preference number: 4 (lower is better)
Translates to: TSGVLQARHALILLNTHIKFHLA*FCQKDI
Trigger: AATATCCTTCTGACAGAACCAGGCCAAGTGAAACTT...TATATGTGTGTTTAACAGGATGAGAGCATGGCGAGCTTGTAGCACACCAGAGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp ACAAATGGAGAAATGCAAAGGTGTTCAAGTACAATGAAGTCATTTTTACAGGTGCTGTGCTTCTACCGCTaGCCCATTATGTGCCTCCTG +
Preference number: 4 (lower is better)
Translates to: TNGEMQRCSSTMKSFLQVLCFYR*PIMCLL
Trigger: CAGGAGGCACATAATGGGCCAGCGGTAGAAGCACAG...CACCTGTAAAAATGACTTCATTGTACTTGAACACCTTTGCATTTCTCCATTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTTGCATCTTCAGAACCTaGCATTCTGCTTCCTGTGCT +
Preference number: 4 (lower is better)
Translates to: VRLEQPRELCALYFKMVFCIFRT*HSASCA
Trigger: AGCACAGGAAGCAGAATGCCAGGTTCTGAAGATGCA...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATATGACCCCAAGCTTGTaGTGTGCCACCCATGGGATG +
Preference number: 4 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYMTPSL*CATHGM
Trigger: CATCCCATGGGTGGCACACCACAAGCTTGGGGTCAT...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp ACAAATGGAGAAATGCAAAGGTGTTCAAGTACAATGAAGTCATTTTTACAGGTGATGACCCCAAGCTTGTaGTGTGCCACCCATGGGATG +
Preference number: 4 (lower is better)
Translates to: TNGEMQRCSSTMKSFLQVMTPSL*CATHGM
Trigger: CATCCCATGGGTGGCACACCACAAGCTTGGGGTCAT...CACCTGTAAAAATGACTTCATTGTACTTGAACACCTTTGCATTTCTCCATTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CAA 72 bp GCAAGAAAGGCATGTTCTATTAGACAAAATCTCTGCTaGAATAGTAGTGGCTCAGAAGGGGTAGAAGGTGCA +
Preference number: 4 (lower is better)
Translates to: ARKACSIRQNLC*NSSGSEGVEGA
Trigger: TGCACCTTCTACCCCTTCTGAGCCACTACTATTCAAGCAGAGATTTTGTCTAATAGAACATGCCTTTCTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp GTACTTGCCCTGATTTCAGGGCATTTCAAACCCTTTCAAATTTTCCTGCTACCACTCACTCTTGTCATCTaGTGCATCTGGAAGACTATT +
Preference number: 4 (lower is better)
Translates to: VLALISGHFKPFQIFLLPLTLVI*CIWKTI
Trigger: AATAGTCTTCCAGATGCATCAGATGACAAGAGTGAG...TGGTAGCAGGAAAATTTGAAAGGGTTTGAAATGCCCTGAAATCAGGGCAAGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTTCTAGATACTGCCTTTaGCGTCGAAGAAGATTAGCT +
Preference number: 4 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSSRYCL*RRRRLA
Trigger: AGCTAATCTTCTTCGACGTCAAAGGCAGTATCTAGA...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTTTAGTGAGCTCAGTTTaGTGCTGCAGTCTGATCAAC +
Preference number: 4 (lower is better)
Translates to: VRLEQPRELCALYFKMVFLVSSV*CCSLIN
Trigger: GTTGATCAGACTGCAGCATCAAACTGAGCTCACTAA...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATCCCCCAGTAGGATTGTaGGACCAACTAGAAGCTCCT +
Preference number: 4 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYPPVGL*DQLEAP
Trigger: AGGAGCTTCTAGTTGGTCTCACAATCCTACTGGGGG...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTCCCATTGGATATTTGTaGAGTGACACTCGTGCTTCT +
Preference number: 4 (lower is better)
Translates to: VRLEQPRELCALYFKMVFPIGYL*SDTRAS
Trigger: AGAAGCACGAGTGTCACTTCACAAATATCCAATGGG...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATCTCCTCTTCTTCCTGTaGTTCTACCGCTGGCCCATT +
Preference number: 4 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYLLFFL*FYRWPI
Trigger: AATGGGCCAGCGGTAGAAGCACAGGAAGAAGAGGAG...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp CCTGCTACCAGTTTTTACTGTGACCACTCCTGCTGTGTACATGATTCAACTAGAATGTTCGTCCATCTCTaGCTTCAGTTTATTTTCCAG +
Preference number: 4 (lower is better)
Translates to: PATSFYCDHSCCVHDSTRMFVHL*LQFIFQ
Trigger: CTGGAAAATAAACTGAAGGCAGAGATGGACGAACAT...TCTAGTTGAATCATGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTAGCAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp CCTGCTACCAGTTTTTACTGTGACCACTCCTGCTGTGTACATGATTCAACTAGATGTATATTCTCCTTCTaGTTTGAAAGCCATTCCTGC +
Preference number: 4 (lower is better)
Translates to: PATSFYCDHSCCVHDSTRCIFSF*FESHSC
Trigger: GCAGGAATGGCTTTCAAAGCAGAAGGAGAATATACA...TCTAGTTGAATCATGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTAGCAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp ACAAATGGAGAAATGCAAAGGTGTTCAAGTACAATGAAGTCATTTTTACAGGTGGTTCTAAGAGCGCTCTaGGAAGGGAGACCCTCTGTT +
Preference number: 4 (lower is better)
Translates to: TNGEMQRCSSTMKSFLQVVLRAL*EGRPSV
Trigger: AACAGAGGGTCTCCCTTCGCAGAGCGCTCTTAGAAC...CACCTGTAAAAATGACTTCATTGTACTTGAACACCTTTGCATTTCTCCATTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACGTAGCTGTGGCTGAATaGCTCAGGGGAGAGATTAGA +
Preference number: 4 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYVAVAE*LRGEIR
Trigger: TCTAATCTCTCCCCTGAGGCATTCAGCCACAGCTAC...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTATCAGCAAGTTTCACTTaGCCTGGTTCTGTCAGAAGG +
Preference number: 4 (lower is better)
Translates to: LIYPVGILLERINLFLYLSASFT*PGSVRR
Trigger: CCTTCTGACAGAACCAGGCCAAGTGAAACTTGCTGA...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACTTCCCACAAAAGAATTaGCAGGGGAAGCCATGGAAG +
Preference number: 4 (lower is better)
Translates to: TSMITYQLADNPHLSGPDFPQKN*QGKPWK
Trigger: CTTCCATGGCTTCCCCTGCCAATTCTTTTGTGGGAA...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTTGGGGCCATCCAATATaGTGTTCCCACAAAAGAATT +
Preference number: 4 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSWGHPI*CSHKRI
Trigger: AATTCTTTTGTGGGAACACCATATTGGATGGCCCCA...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp CCTGCTACCAGTTTTTACTGTGACCACTCCTGCTGTGTACATGATTCAACTAGATCCTCAGGTTTTAAGTaGATGACAGAACTGTTAGAC +
Preference number: 4 (lower is better)
Translates to: PATSFYCDHSCCVHDSTRSSGFK*MTELLD
Trigger: GTCTAACAGTTCTGTCATCCACTTAAAACCTGAGGA...TCTAGTTGAATCATGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTAGCAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp CCTGCTACCAGTTTTTACTGTGACCACTCCTGCTGTGTACATGATTCAACTAGAGTGATGCTGTTCGTATaGTTGCAAAGTGTTCTCTAT +
Preference number: 4 (lower is better)
Translates to: PATSFYCDHSCCVHDSTRVMLFV*LQSVLY
Trigger: ATAGAGAACACTTTGCAACCATACGAACAGCATCAC...TCTAGTTGAATCATGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTAGCAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTAAGCTCTCGATCATGTTaGGCCTCAGCTTGCATCTTT +
Preference number: 4 (lower is better)
Translates to: LIYPVGILLERINLFLYLSSRSC*ASACIF
Trigger: AAAGATGCAAGCTGAGGCCCAACATGATCGAGAGCT...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATCCAACTAGAAGCTCCTaGGTAGCTGTGGCTGAATGC +
Preference number: 4 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYPTRSS*VAVAEC
Trigger: GCATTCAGCCACAGCTACCCAGGAGCTTCTAGTTGG...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTGGATATTTCCTGCTTTaGTATCTCTATGGATCATGG +
Preference number: 4 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSGYFLL*YLYGSW
Trigger: CCATGATCCATAGAGATATCAAAGCAGGAAATATCC...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp CTTTGTGTTGGCTATAGGTCTTCATTTTTGTACAAACAAAGCAAAGGTACTGTTGATGTAGGGCGATCTTaGGGGATTTTCTGGAGGCAA +
Preference number: 4 (lower is better)
Translates to: LCVGYRSSFLYKQSKGTVDVGRS*GIFWRQ
Trigger: TTGCCTCCAGAAAATCCCTCAAGATCGCCCTACATC...AACAGTACCTTTGCTTTGTTTGTACAAAAATGAAGACCTATAGCCAACACAAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTCTCACTCTTGTCATCTaGTGCATCTGGAAGACTATT +
Preference number: 4 (lower is better)
Translates to: VRLEQPRELCALYFKMVFLTLVI*CIWKTI
Trigger: AATAGTCTTCCAGATGCATCAGATGACAAGAGTGAG...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACCTGTCTTGTAACCAGTaGTGCTGTTCGTATGGTTGC +
Preference number: 4 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYLSCNQ*CCSYGC
Trigger: GCAACCATACGAACAGCATCACTGGTTACAAGACAG...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACGATCTTTGTCTAATCTaGGCCGATGTTCGTCCATCT +
Preference number: 4 (lower is better)
Translates to: TSMITYQLADNPHLSGPDDLCLI*ADVRPS
Trigger: AGATGGACGAACATCGGCTCAGATTAGACAAAGATC...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTGCGAAATTGTTACGCTaGGTTTCAAGATCTTTGTCT +
Preference number: 4 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSAKLLR*VSRSLS
Trigger: AGACAAAGATCTTGAAACTCAGCGTAACAATTTCGC...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACTTAGTGAGCTCAGTTTaGTGCTGCAGTCTGATCAAC +
Preference number: 4 (lower is better)
Translates to: TSMITYQLADNPHLSGPDLVSSV*CCSLIN
Trigger: GTTGATCAGACTGCAGCATCAAACTGAGCTCACTAA...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTAGTTGTCGAACTTCCATaGCATGTTTTCGCCTCAGTT +
Preference number: 4 (lower is better)
Translates to: LIYPVGILLERINLFLYLVVELP*HVFASV
Trigger: AACTGAGGCGAAAACATGTCATGGAAGTTCGACAAC...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACTGGATATTTGTGAAGTaGCACTCGTGCTTCTGCTCA +
Preference number: 4 (lower is better)
Translates to: TSMITYQLADNPHLSGPDWIFVK*HSCFCS
Trigger: TGAGCAGAAGCACGAGTGTCACTTCACAAATATCCA...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACCCCATTGGATATTTGTaGAGTGACACTCGTGCTTCT +
Preference number: 4 (lower is better)
Translates to: TSMITYQLADNPHLSGPDPIGYL*SDTRAS
Trigger: AGAAGCACGAGTGTCACTTCACAAATATCCAATGGG...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp GTACTTGCCCTGATTTCAGGGCATTTCAAACCCTTTCAAATTTTCCTGCTACCAAGTACGCACATCTCGTaGAAAATATACTGCTCCAAA +
Preference number: 4 (lower is better)
Translates to: VLALISGHFKPFQIFLLPSTHIS*KIYCSK
Trigger: TTTGGAGCAGTATATTTTGCACGAGATGTGCGTACT...TGGTAGCAGGAAAATTTGAAAGGGTTTGAAATGCCCTGAAATCAGGGCAAGTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp CCTGCTACCAGTTTTTACTGTGACCACTCCTGCTGTGTACATGATTCAACTAGAACCATACATCAACTTTaGCATCATACTGTCCTTCAT +
Preference number: 4 (lower is better)
Translates to: PATSFYCDHSCCVHDSTRTIHQL*HHTVLH
Trigger: ATGAAGGACAGTATGATGGCAAAGTTGATGTATGGT...TCTAGTTGAATCATGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTAGCAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATCGCTGGCCCATTATGTaGCTCCTGGAAAAGGAGTTT +
Preference number: 4 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYRWPIM*LLEKEF
Trigger: AAACTCCTTTTCCAGGAGGCACATAATGGGCCAGCG...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTACGAAACTCCAGTTCTTaGATTGATTCATGCTGTCGC +
Preference number: 4 (lower is better)
Translates to: LIYPVGILLERINLFLYLRNSSS*IDSCCR
Trigger: GCGACAGCATGAATCAATGCAAGAACTGGAGTTTCG...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp ACCTCTGGTGTGCTACAAGCTCGCCATGCTCTCATCCTGTTAAACACACATATACTTGCATCTTTATTTTaGTCTGATAAGCATTCAGCA +
Preference number: 4 (lower is better)
Translates to: TSGVLQARHALILLNTHILASLF*SDKHSA
Trigger: TGCTGAATGCTTATCAGAGCAAAATAAAGATGCAAG...TATATGTGTGTTTAACAGGATGAGAGCATGGCGAGCTTGTAGCACACCAGAGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp CTTTGTGTTGGCTATAGGTCTTCATTTTTGTACAAACAAAGCAAAGGTACTGTTGTAGCTGTGGCTGAATaGCTCAGGGGAGAGATTAGA +
Preference number: 4 (lower is better)
Translates to: LCVGYRSSFLYKQSKGTVVAVAE*LRGEIR
Trigger: TCTAATCTCTCCCCTGAGGCATTCAGCCACAGCTAC...AACAGTACCTTTGCTTTGTTTGTACAAAAATGAAGACCTATAGCCAACACAAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTTTAGACATCACTGTATaGTCTCCCTCCATCATGTCT +
Preference number: 4 (lower is better)
Translates to: VRLEQPRELCALYFKMVFLDITV*SPSIMS
Trigger: AGACATGATGGAGGGAGACCATACAGTGATGTCTAA...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTGTGATGCTGTTCGTATaGTTGCAAAGTGTTCTCTAT +
Preference number: 4 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSVMLFV*LQSVLY
Trigger: ATAGAGAACACTTTGCAACCATACGAACAGCATCAC...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp ACCTCTGGTGTGCTACAAGCTCGCCATGCTCTCATCCTGTTAAACACACATATAATGCTTTGTACTGTCTaGTTTGAATTTTGCAGGTAT +
Preference number: 4 (lower is better)
Translates to: TSGVLQARHALILLNTHIMLCTV*FEFCRY
Trigger: ATACCTGCAAAATTCAAACCAGACAGTACAAAGCAT...TATATGTGTGTTTAACAGGATGAGAGCATGGCGAGCTTGTAGCACACCAGAGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACAGCTCTCGATCATGTTaGGCCTCAGCTTGCATCTTT +
Preference number: 4 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYSSRSC*ASACIF
Trigger: AAAGATGCAAGCTGAGGCCCAACATGATCGAGAGCT...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp CTTTGTGTTGGCTATAGGTCTTCATTTTTGTACAAACAAAGCAAAGGTACTGTTTTAACACTGCTGCTTTaGCTGCTGGCACTGATAGAC +
Preference number: 4 (lower is better)
Translates to: LCVGYRSSFLYKQSKGTVLTLLL*LLALID
Trigger: GTCTATCAGTGCCAGCAGTCAAAGCAGCAGTGTTAA...AACAGTACCTTTGCTTTGTTTGTACAAAAATGAAGACCTATAGCCAACACAAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATCTGTCTTGTAACCAGTaGTGCTGTTCGTATGGTTGC +
Preference number: 4 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYLSCNQ*CCSYGC
Trigger: GCAACCATACGAACAGCATCACTGGTTACAAGACAG...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTGTAACATTCTTCTTTTaGAGCGACGACATTCTAGCT +
Preference number: 4 (lower is better)
Translates to: VRLEQPRELCALYFKMVFVTFFF*SDDILA
Trigger: AGCTAGAATGTCGTCGCTTCAAAAGAAGAATGTTAC...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTTCCTTAATAATATCCTaGCATTTCTCAGTAGACTGC +
Preference number: 4 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSSLIIS*HFSVDC
Trigger: GCAGTCTACTGAGAAATGGCAGGATATTATTAAGGA...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTAAGTTTCTCCATTTCTaGAGCGAAATTGTTACGCTG +
Preference number: 4 (lower is better)
Translates to: VRLEQPRELCALYFKMVFKFLHF*SEIVTL
Trigger: CAGCGTAACAATTTCGCTGCAGAAATGGAGAAACTT...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTAGCTCCTCCTTAAGCTaGTCTTTGCGAAGTTTATAT +
Preference number: 4 (lower is better)
Translates to: VRLEQPRELCALYFKMVFSSSLS*SLRSLY
Trigger: ATATAAACTTCGCAAAGAGCAGCTTAAGGAGGAGCT...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CAA 72 bp ATTAATTCTAAAATGTCACCTAGGATGGTTTCAGGGTaGTATGCTAGAGCACGACTAGCAATGACAGCAACT +
Preference number: 4 (lower is better)
Translates to: INSKMSPRMVSG*YARARLAMTAT
Trigger: AGTTGCTGTCATTGCTAGTCGTGCTCTAGCATACAACCCTGAAACCATCCTAGGTGACATTTTAGAATTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp CTTTGTGTTGGCTATAGGTCTTCATTTTTGTACAAACAAAGCAAAGGTACTGTTGTTGTCGAACTTCCATaGCATGTTTTCGCCTCAGTT +
Preference number: 4 (lower is better)
Translates to: LCVGYRSSFLYKQSKGTVVVELP*HVFASV
Trigger: AACTGAGGCGAAAACATGTCATGGAAGTTCGACAAC...AACAGTACCTTTGCTTTGTTTGTACAAAAATGAAGACCTATAGCCAACACAAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp ACAAATGGAGAAATGCAAAGGTGTTCAAGTACAATGAAGTCATTTTTACAGGTGTGGATATTTGTGAAGTaGCACTCGTGCTTCTGCTCA +
Preference number: 4 (lower is better)
Translates to: TNGEMQRCSSTMKSFLQVWIFVK*HSCFCS
Trigger: TGAGCAGAAGCACGAGTGTCACTTCACAAATATCCA...CACCTGTAAAAATGACTTCATTGTACTTGAACACCTTTGCATTTCTCCATTTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTAAGCACCATGTGTAATTaGTGCTATTTCCACTTCTTG +
Preference number: 4 (lower is better)
Translates to: LIYPVGILLERINLFLYLSTMCN*CYFHFL
Trigger: CAAGAAGTGGAAATAGCAGCAATTACACATGGTGCT...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp GTACTTGCCCTGATTTCAGGGCATTTCAAACCCTTTCAAATTTTCCTGCTACCACGAAGAACAAACATGTaGTTTAAAAGTTCCTCTGAT +
Preference number: 4 (lower is better)
Translates to: VLALISGHFKPFQIFLLPRRTNM*FKSSSD
Trigger: ATCAGAGGAACTTTTAAAGCACATGTTTGTTCTTCG...TGGTAGCAGGAAAATTTGAAAGGGTTTGAAATGCCCTGAAATCAGGGCAAGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACGTCCAGCTCTCTTACTaGATCCTTTGTCCTTTGAAT +
Preference number: 4 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYVQLSY*ILCPLN
Trigger: ATTCAAAGGACAAAGGATGCAGTAAGAGAGCTGGAC...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACTGCTGTTCGTATGGTTaGAAAGTGTTCTCTATTACG +
Preference number: 4 (lower is better)
Translates to: TSMITYQLADNPHLSGPDCCSYG*KVFSIT
Trigger: CGTAATAGAGAACACTTTGCAACCATACGAACAGCA...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTATGCTGTTCGTATGGTTaGAAAGTGTTCTCTATTACG +
Preference number: 4 (lower is better)
Translates to: LIYPVGILLERINLFLYLCCSYG*KVFSIT
Trigger: CGTAATAGAGAACACTTTGCAACCATACGAACAGCA...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACGTCTGGTTTGAATTTTaGAGGTATCCTGAAACTGCT +
Preference number: 4 (lower is better)
Translates to: TSMITYQLADNPHLSGPDVWFEF*RYPETA
Trigger: AGCAGTTTCAGGATACCTGCAAAATTCAAACCAGAC...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTAAAGTTTCACTTGGCCTaGTTCTGTCAGAAGGATATT +
Preference number: 4 (lower is better)
Translates to: LIYPVGILLERINLFLYLKFHLA*FCQKDI
Trigger: AATATCCTTCTGACAGAACCAGGCCAAGTGAAACTT...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACTGGGGCCATCCAATATaGTGTTCCCACAAAAGAATT +
Preference number: 4 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYWGHPI*CSHKRI
Trigger: AATTCTTTTGTGGGAACACCATATTGGATGGCCCCA...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACTTAGACATCACTGTATaGTCTCCCTCCATCATGTCT +
Preference number: 4 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYLDITV*SPSIMS
Trigger: AGACATGATGGAGGGAGACCATACAGTGATGTCTAA...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTATCCTCAGGTTTTAAGTaGATGACAGAACTGTTAGAC +
Preference number: 4 (lower is better)
Translates to: LIYPVGILLERINLFLYLSSGFK*MTELLD
Trigger: GTCTAACAGTTCTGTCATCCACTTAAAACCTGAGGA...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CAA 72 bp ATGGCATCATCCAATACCTCTGGCATTTGCTTTGTGTaGGCTATAGGTCTTCATTTTTGTACAAACAAAGCA +
Preference number: 4 (lower is better)
Translates to: MASSNTSGICFV*AIGLHFCTNKA
Trigger: TGCTTTGTTTGTACAAAAATGAAGACCTATAGCCAACACAAAGCAAATGCCAGAGGTATTGGATGATGCCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CAA 72 bp CAGTTCAAATATGGCATCATCCAATACCTCTGGCATTaGCTTTGTGTTGGCTATAGGTCTTCATTTTTGTAC +
Preference number: 4 (lower is better)
Translates to: QFKYGIIQYLWH*LCVGYRSSFLY
Trigger: GTACAAAAATGAAGACCTATAGCCAACACAAAGCAAATGCCAGAGGTATTGGATGATGCCATATTTGAACTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CAA 72 bp GCTTACAGAAAGATTACTAGTATTTTGAGGCCAGCCTaGGCTAAACATCAATTATCCAATCAGAAAGGGTAC +
Preference number: 4 (lower is better)
Translates to: AYRKITSILRPA*AKHQLSNQKGY
Trigger: GTACCCTTTCTGATTGGATAATTGATGTTTAGCCAAGGCTGGCCTCAAAATACTAGTAATCTTTCTGTAAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACGGATATTTCCTGCTTTaGTATCTCTATGGATCATGG +
Preference number: 4 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYGYFLL*YLYGSW
Trigger: CCATGATCCATAGAGATATCAAAGCAGGAAATATCC...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACGTAACATTCTTCTTTTaGAGCGACGACATTCTAGCT +
Preference number: 4 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYVTFFF*SDDILA
Trigger: AGCTAGAATGTCGTCGCTTCAAAAGAAGAATGTTAC...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR TCA 90 bp ACAAATGGAGAAATGCAAAGGTGTTCAAGTACAATGAAGTCATTTTTACAGGTGGTAGTCTCCAGTAGGTaGTTCCTTAATGCTTTGTAC +
Preference number: 4 (lower is better)
Translates to: TNGEMQRCSSTMKSFLQVVVSSR*FLNALY
Trigger: GTACAAAGCATTAAGGAATCACCTACTGGAGACTAC...CACCTGTAAAAATGACTTCATTGTACTTGAACACCTTTGCATTTCTCCATTTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACTCCTTAATAATATCCTaGCATTTCTCAGTAGACTGC +
Preference number: 4 (lower is better)
Translates to: TSMITYQLADNPHLSGPDSLIIS*HFSVDC
Trigger: GCAGTCTACTGAGAAATGGCAGGATATTATTAAGGA...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATGTCCAGCTCTCTTACTaGATCCTTTGTCCTTTGAAT +
Preference number: 4 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYVQLSY*ILCPLN
Trigger: ATTCAAAGGACAAAGGATGCAGTAAGAGAGCTGGAC...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACGTCTGGTTTGAATTTTaGAGGTATCCTGAAACTGCT +
Preference number: 4 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYVWFEF*RYPETA
Trigger: AGCAGTTTCAGGATACCTGCAAAATTCAAACCAGAC...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp ACAAATGGAGAAATGCAAAGGTGTTCAAGTACAATGAAGTCATTTTTACAGGTGTCTGTGCGTTCATTCTaGAAAGCCAACATCTCTTCT +
Preference number: 4 (lower is better)
Translates to: TNGEMQRCSSTMKSFLQVSVRSF*KANISS
Trigger: AGAAGAGATGTTGGCTTTGCAGAATGAACGCACAGA...CACCTGTAAAAATGACTTCATTGTACTTGAACACCTTTGCATTTCTCCATTTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATTCTGTGCGTTCATTCTaGAAAGCCAACATCTCTTCT +
Preference number: 4 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYSVRSF*KANISS
Trigger: AGAAGAGATGTTGGCTTTGCAGAATGAACGCACAGA...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp ACAAATGGAGAAATGCAAAGGTGTTCAAGTACAATGAAGTCATTTTTACAGGTGTACGTATTCGTTCTGTaGGTTCATTCTGCAAAGCCA +
Preference number: 4 (lower is better)
Translates to: TNGEMQRCSSTMKSFLQVYVFVL*VHSAKP
Trigger: TGGCTTTGCAGAATGAACGCACAGAACGAATACGTA...CACCTGTAAAAATGACTTCATTGTACTTGAACACCTTTGCATTTCTCCATTTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATTACGTATTCGTTCTGTaGGTTCATTCTGCAAAGCCA +
Preference number: 4 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYYVFVL*VHSAKP
Trigger: TGGCTTTGCAGAATGAACGCACAGAACGAATACGTA...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp CTTTGTGTTGGCTATAGGTCTTCATTTTTGTACAAACAAAGCAAAGGTACTGTTCCATTATGTGCCTCCTaGAAAAGGAGTTTCTTCATC +
Preference number: 4 (lower is better)
Translates to: LCVGYRSSFLYKQSKGTVPLCAS*KRSFFI
Trigger: GATGAAGAAACTCCTTTTCCAGGAGGCACATAATGG...AACAGTACCTTTGCTTTGTTTGTACAAAAATGAAGACCTATAGCCAACACAAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CAA 72 bp TGCCTAGACCTGTGTGTGAATACTATTAACCTTCTATaGGATTTTCAAAGGACCTATACTATAGCATCTACC +
Preference number: 4 (lower is better)
Translates to: CLDLCVNTINLL*DFQRTYTIAST
Trigger: GGTAGATGCTATAGTATAGGTCCTTTGAAAATCCAATAGAAGGTTAATAGTATTCACACACAGGTCTAGGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATAGTACGCACATCTCGTaGAAAATATACTGCTCCAAA +
Preference number: 4 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYSTHIS*KIYCSK
Trigger: TTTGGAGCAGTATATTTTGCACGAGATGTGCGTACT...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACCAGAAGGATATTTCCTaGTTTGATATCTCTATGGAT +
Preference number: 4 (lower is better)
Translates to: TSMITYQLADNPHLSGPDQKDIS*FDISMD
Trigger: ATCCATAGAGATATCAAAGCAGGAAATATCCTTCTG...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATATGTTCGTCCATCTCTaGCTTCAGTTTATTTTCCAG +
Preference number: 4 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYMFVHL*LQFIFQ
Trigger: CTGGAAAATAAACTGAAGGCAGAGATGGACGAACAT...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp CTTTGTGTTGGCTATAGGTCTTCATTTTTGTACAAACAAAGCAAAGGTACTGTTAAGTTTCTCCATTTCTaGAGCGAAATTGTTACGCTG +
Preference number: 4 (lower is better)
Translates to: LCVGYRSSFLYKQSKGTVKFLHF*SEIVTL
Trigger: CAGCGTAACAATTTCGCTGCAGAAATGGAGAAACTT...AACAGTACCTTTGCTTTGTTTGTACAAAAATGAAGACCTATAGCCAACACAAAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATAGCTCCTCCTTAAGCTaGTCTTTGCGAAGTTTATAT +
Preference number: 4 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYSSSLS*SLRSLY
Trigger: ATATAAACTTCGCAAAGAGCAGCTTAAGGAGGAGCT...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp CTTTGTGTTGGCTATAGGTCTTCATTTTTGTACAAACAAAGCAAAGGTACTGTTTTCAAAACAGCTTTGTaGTCACTCTTTGGTGTAGTC +
Preference number: 4 (lower is better)
Translates to: LCVGYRSSFLYKQSKGTVFKTAL*SLFGVV
Trigger: GACTACACCAAAGAGTGAGCACAAAGCTGTTTTGAA...AACAGTACCTTTGCTTTGTTTGTACAAAAATGAAGACCTATAGCCAACACAAAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACCAGAAGGATATTTCCTaGTTTGATATCTCTATGGAT +
Preference number: 4 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYQKDIS*FDISMD
Trigger: ATCCATAGAGATATCAAAGCAGGAAATATCCTTCTG...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp CTTTGTGTTGGCTATAGGTCTTCATTTTTGTACAAACAAAGCAAAGGTACTGTTACCATACATCAACTTTaGCATCATACTGTCCTTCAT +
Preference number: 4 (lower is better)
Translates to: LCVGYRSSFLYKQSKGTVTIHQL*HHTVLH
Trigger: ATGAAGGACAGTATGATGGCAAAGTTGATGTATGGT...AACAGTACCTTTGCTTTGTTTGTACAAAAATGAAGACCTATAGCCAACACAAAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACCGAAGAACAAACATGTaGTTTAAAAGTTCCTCTGAT +
Preference number: 4 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYRRTNM*FKSSSD
Trigger: ATCAGAGGAACTTTTAAAGCACATGTTTGTTCTTCG...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CAA 72 bp TATATTAACAATAATGTTCATGCCGAGGCAATGTATTaGAGGGCTAAGAAAAAGCAAAATGTGCCACTGAGA +
Preference number: 4 (lower is better)
Translates to: YINNNVHAEAMY*RAKKKQNVPLR
Trigger: TCTCAGTGGCACATTTTGCTTTTTCTTAGCCCTCAAATACATTGCCTCGGCATGAACATTATTGTTAATATA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CAA 72 bp ATCGAAAGGACCGGGTTTACTCATAATTATCCACTGTaGAGAGTATTGGGATACTACATGTTCAATATGATA +
Preference number: 4 (lower is better)
Translates to: IERTGFTHNYPL*RVLGYYMFNMI
Trigger: TATCATATTGAACATGTAGTATCCCAATACTCTCAACAGTGGATAATTATGAGTAAACCCGGTCCTTTCGAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
3UTR CAA 72 bp ACCGGGTTTACTCATAATTATCCACTGTTGAGAGTATaGGGATACTACATGTTCAATATGATAATCTTTTGC +
Preference number: 4 (lower is better)
Translates to: TGFTHNYPLLRV*GYYMFNMIIFC
Trigger: GCAAAAGATTATCATATTGAACATGTAGTATCCCAATACTCTCAACAGTGGATAATTATGAGTAAACCCGGT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR GCA 90 bp CTTTGTGTTGGCTATAGGTCTTCATTTTTGTACAAACAAAGCAAAGGTACTGTTCTTGCATCTTTATTTTaGTCTGATAAGCATTCAGCA +
Preference number: 4 (lower is better)
Translates to: LCVGYRSSFLYKQSKGTVLASLF*SDKHSA
Trigger: TGCTGAATGCTTATCAGAGCAAAATAAAGATGCAAG...AACAGTACCTTTGCTTTGTTTGTACAAAAATGAAGACCTATAGCCAACACAAAG
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CCA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATATGCTTTGTACTGTCTaGTTTGAATTTTGCAGGTAT +
Preference number: 4 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYMLCTV*FEFCRY
Trigger: ATACCTGCAAAATTCAAACCAGACAGTACAAAGCAT...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS GCA 90 bp AAGCTGTCCGCCTCAAAGCCTGGGGGCTATTGCGGACTCCCATACTaGTACCTCGAGGTACCCCTTGCATTGGCCCTGAGGGATGACCCC +
Preference number: 5 (lower is better)
Translates to: KLSASKPGGYCGLPY*YLEVPLALALRDDP
Trigger: GGGGTCATCCCTCAGGGCCAATGCAAGGGGTACCTCGAGGTAGCAGTATGGGAGTCCGCAATAGCCCCCAGGCTTTGAGGCGGACAGCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS CCA 90 bp AGGTCCTGGACCCCCAGTAGGATTGTGAGACCAACTAGAAGCTCCTaGGTAGCTGTGGCTGAATGCCTCAGGGGAGAGATTAGAAAGGAC +
Preference number: 5 (lower is better)
Translates to: RSWTPSRIVRPTRSS*VAVAECLRGEIRKD
Trigger: GTCCTTTCTAATCTCTCCCCTGAGGCATTCAGCCACAGCTACCCAGGAGCTTCTAGTTGGTCTCACAATCCTACTGGGGGTCCAGGACCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp CCTGCTACCAGTTTTTACTGTGACCACTCCTGCTGTGTACATGATTCAACTAGATGGTTGGGGTCCACCTaGCATCGGATGACCCCAAGC +
Preference number: 5 (lower is better)
Translates to: PATSFYCDHSCCVHDSTRWLGST*HRMTPS
Trigger: GCTTGGGGTCATCCGATGCAAGGTGGACCCCAACCA...TCTAGTTGAATCATGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTAGCAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp GTACTTGCCCTGATTTCAGGGCATTTCAAACCCTTTCAAATTTTCCTGCTACCAGGGATGACCCCATGGTaGGGGTCCACCTTGCATCGG +
Preference number: 5 (lower is better)
Translates to: VLALISGHFKPFQIFLLPGMTPW*GSTLHR
Trigger: CCGATGCAAGGTGGACCCCAACCATGGGGTCATCCC...TGGTAGCAGGAAAATTTGAAAGGGTTTGAAATGCCCTGAAATCAGGGCAAGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTGAGGTACCCCTTGCATaGGCCCTGAGGGATGACCCC +
Preference number: 5 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSEVPLA*ALRDDP
Trigger: GGGGTCATCCCTCAGGGCCAATGCAAGGGGTACCTC...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTGAGGTACCCCTTGCATaGGCCCTGAGGGATGACCCC +
Preference number: 5 (lower is better)
Translates to: VRLEQPRELCALYFKMVFEVPLA*ALRDDP
Trigger: GGGGTCATCCCTCAGGGCCAATGCAAGGGGTACCTC...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTACGGATGACCCCAAGCTaGTGGTGTGCCACCCATGGG +
Preference number: 5 (lower is better)
Translates to: LIYPVGILLERINLFLYLRMTPS*WCATHG
Trigger: CCCATGGGTGGCACACCACAAGCTTGGGGTCATCCG...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp CCTGCTACCAGTTTTTACTGTGACCACTCCTGCTGTGTACATGATTCAACTAGAAAAGCCTGGGGGCTATaGCGGACTCCCATACTGCTA +
Preference number: 5 (lower is better)
Translates to: PATSFYCDHSCCVHDSTRKAWGL*RTPILL
Trigger: TAGCAGTATGGGAGTCCGCAATAGCCCCCAGGCTTT...TCTAGTTGAATCATGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTAGCAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp GTACTTGCCCTGATTTCAGGGCATTTCAAACCCTTTCAAATTTTCCTGCTACCAAAAGCCTGGGGGCTATaGCGGACTCCCATACTGCTA +
Preference number: 5 (lower is better)
Translates to: VLALISGHFKPFQIFLLPKAWGL*RTPILL
Trigger: TAGCAGTATGGGAGTCCGCAATAGCCCCCAGGCTTT...TGGTAGCAGGAAAATTTGAAAGGGTTTGAAATGCCCTGAAATCAGGGCAAGTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp CTTTGTGTTGGCTATAGGTCTTCATTTTTGTACAAACAAAGCAAAGGTACTGTTCGGATGACCCCAAGCTaGTGGTGTGCCACCCATGGG +
Preference number: 5 (lower is better)
Translates to: LCVGYRSSFLYKQSKGTVRMTPS*WCATHG
Trigger: CCCATGGGTGGCACACCACAAGCTTGGGGTCATCCG...AACAGTACCTTTGCTTTGTTTGTACAAAAATGAAGACCTATAGCCAACACAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATGGGATGACCCCATGGTaGGGGTCCACCTTGCATCGG +
Preference number: 5 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYGMTPW*GSTLHR
Trigger: CCGATGCAAGGTGGACCCCAACCATGGGGTCATCCC...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp ACCTCTGGTGTGCTACAAGCTCGCCATGCTCTCATCCTGTTAAACACACATATAATGTCTAGCTCACTCTaGTCATCTGATGCATCTGGA +
Preference number: 5 (lower is better)
Translates to: TSGVLQARHALILLNTHIMSSSL*SSDASG
Trigger: TCCAGATGCATCAGATGACAAGAGTGAGCTAGACAT...TATATGTGTGTTTAACAGGATGAGAGCATGGCGAGCTTGTAGCACACCAGAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATTGGTTGGGGTCCACCTaGCATCGGATGACCCCAAGC +
Preference number: 5 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYWLGST*HRMTPS
Trigger: GCTTGGGGTCATCCGATGCAAGGTGGACCCCAACCA...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS TCA 90 bp CAAGGTCCTGTTCCAAGTTATGTCGCCCAAGTAACATTCTTCTTTTaGAGCGACGACATTCTAGCTCTAGATACTGCCTTTGACGTCGAA +
Preference number: 5 (lower is better)
Translates to: QGPVPSYVAQVTFFF*SDDILALDTAFDVE
Trigger: TTCGACGTCAAAGGCAGTATCTAGAGCTAGAATGTCGTCGCTTCAAAAGAAGAATGTTACTTGGGCGACATAACTTGGAACAGGACCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS GCA 90 bp CAATTTCTCTGGCTTGACGCTCGAGCAGGCTACGTATTCGTTCTGTaGGTTCATTCTGCAAAGCCAACATCTCTTCTTCAATCTTTTGTT +
Preference number: 5 (lower is better)
Translates to: QFLWLDARAGYVFVL*VHSAKPTSLLQSFV
Trigger: AACAAAAGATTGAAGAAGAGATGTTGGCTTTGCAGAATGAACGCACAGAACGAATACGTAGCCTGCTCGAGCGTCAAGCCAGAGAAATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp ACCTCTGGTGTGCTACAAGCTCGCCATGCTCTCATCCTGTTAAACACACATATAGACCATACATCAACTTaGCCATCATACTGTCCTTCA +
Preference number: 5 (lower is better)
Translates to: TSGVLQARHALILLNTHIDHTST*PSYCPS
Trigger: TGAAGGACAGTATGATGGCAAAGTTGATGTATGGTC...TATATGTGTGTTTAACAGGATGAGAGCATGGCGAGCTTGTAGCACACCAGAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp CCTGCTACCAGTTTTTACTGTGACCACTCCTGCTGTGTACATGATTCAACTAGATTTCGATACTGCAGATaGTCCAGCTCTCTTACTGCA +
Preference number: 5 (lower is better)
Translates to: PATSFYCDHSCCVHDSTRFRYCR*SSSLTA
Trigger: TGCAGTAAGAGAGCTGGACAATCTGCAGTATCGAAA...TCTAGTTGAATCATGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTAGCAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp CCTGCTACCAGTTTTTACTGTGACCACTCCTGCTGTGTACATGATTCAACTAGACAGACTCTTAGGTTGTaGTCGAACTTCCATGACATG +
Preference number: 5 (lower is better)
Translates to: PATSFYCDHSCCVHDSTRQTLRL*SNFHDM
Trigger: CATGTCATGGAAGTTCGACAACAACCTAAGAGTCTG...TCTAGTTGAATCATGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTAGCAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp CCTGCTACCAGTTTTTACTGTGACCACTCCTGCTGTGTACATGATTCAACTAGACTTCAGACTCTTAGGTaGTTGTCGAACTTCCATGAC +
Preference number: 5 (lower is better)
Translates to: PATSFYCDHSCCVHDSTRLQTLR*LSNFHD
Trigger: GTCATGGAAGTTCGACAACAACCTAAGAGTCTGAAG...TCTAGTTGAATCATGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTAGCAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp ACCTCTGGTGTGCTACAAGCTCGCCATGCTCTCATCCTGTTAAACACACATATATTTTCCGGATCTTCTTaGAAGAAGAGCTCTGCAATT +
Preference number: 5 (lower is better)
Translates to: TSGVLQARHALILLNTHIFSGSS*KKSSAI
Trigger: AATTGCAGAGCTCTTCTTCAAAGAAGATCCGGAAAA...TATATGTGTGTTTAACAGGATGAGAGCATGGCGAGCTTGTAGCACACCAGAGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTTTTCGATACTGCAGATaGTCCAGCTCTCTTACTGCA +
Preference number: 5 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSFRYCR*SSSLTA
Trigger: TGCAGTAAGAGAGCTGGACAATCTGCAGTATCGAAA...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp GTACTTGCCCTGATTTCAGGGCATTTCAAACCCTTTCAAATTTTCCTGCTACCAATGTCTAGCTCACTCTaGTCATCTGATGCATCTGGA +
Preference number: 5 (lower is better)
Translates to: VLALISGHFKPFQIFLLPMSSSL*SSDASG
Trigger: TCCAGATGCATCAGATGACAAGAGTGAGCTAGACAT...TGGTAGCAGGAAAATTTGAAAGGGTTTGAAATGCCCTGAAATCAGGGCAAGTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTCGTTCCCTTCTCTTATaGTACTCTAGCTGGTTAGTG +
Preference number: 5 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSRSLLL*YSSWLV
Trigger: CACTAACCAGCTAGAGTACAATAAGAGAAGGGAACG...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp CTTGAGCATCAAGACATCCTTCCATTCACTGAGAAGTCTTACCTTCTCTTCTCTCTTCAGACTCTTAGGTaGTTGTCGAACTTCCATGAC +
Preference number: 5 (lower is better)
Translates to: LEHQDILPFTEKSYLLFSLQTLR*LSNFHD
Trigger: GTCATGGAAGTTCGACAACAACCTAAGAGTCTGAAG...AGAGAAGAGAAGGTAAGACTTCTCAGTGAATGGAAGGATGTCTTGATGCTCAAG
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp ACCTCTGGTGTGCTACAAGCTCGCCATGCTCTCATCCTGTTAAACACACATATACTTTTCAAAACAGCTTaGTGCTCACTCTTTGGTGTA +
Preference number: 5 (lower is better)
Translates to: TSGVLQARHALILLNTHILFKTA*CSLFGV
Trigger: TACACCAAAGAGTGAGCACAAAGCTGTTTTGAAAAG...TATATGTGTGTTTAACAGGATGAGAGCATGGCGAGCTTGTAGCACACCAGAGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTAAAGCTCTCGATCATGTaGGGCCTCAGCTTGCATCTT +
Preference number: 5 (lower is better)
Translates to: LIYPVGILLERINLFLYLKLSIM*GLSLHL
Trigger: AAGATGCAAGCTGAGGCCCAACATGATCGAGAGCTT...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp CCTGCTACCAGTTTTTACTGTGACCACTCCTGCTGTGTACATGATTCAACTAGATTTTCCGGATCTTCTTaGAAGAAGAGCTCTGCAATT +
Preference number: 5 (lower is better)
Translates to: PATSFYCDHSCCVHDSTRFSGSS*KKSSAI
Trigger: AATTGCAGAGCTCTTCTTCAAAGAAGATCCGGAAAA...TCTAGTTGAATCATGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTAGCAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp ACCTCTGGTGTGCTACAAGCTCGCCATGCTCTCATCCTGTTAAACACACATATAAGGATATTTCCTGCTTaGATATCTCTATGGATCATG +
Preference number: 5 (lower is better)
Translates to: TSGVLQARHALILLNTHIRIFPA*ISLWIM
Trigger: CATGATCCATAGAGATATCAAAGCAGGAAATATCCT...TATATGTGTGTTTAACAGGATGAGAGCATGGCGAGCTTGTAGCACACCAGAGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATGCCAACACCATGATCTaGCTCCTCCTCTTCTTCCTG +
Preference number: 5 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYANTMI*LLLFFL
Trigger: CAGGAAGAAGAGGAGGAGCAAGATCATGGTGTTGGC...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp CCTGCTACCAGTTTTTACTGTGACCACTCCTGCTGTGTACATGATTCAACTAGAATGCTGTTCGTATGGTaGCAAAGTGTTCTCTATTAC +
Preference number: 5 (lower is better)
Translates to: PATSFYCDHSCCVHDSTRMLFVW*QSVLYY
Trigger: GTAATAGAGAACACTTTGCAACCATACGAACAGCAT...TCTAGTTGAATCATGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTAGCAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp CCTGCTACCAGTTTTTACTGTGACCACTCCTGCTGTGTACATGATTCAACTAGAAGTAACATTCTTCTTTaGAAGCGACGACATTCTAGC +
Preference number: 5 (lower is better)
Translates to: PATSFYCDHSCCVHDSTRSNILL*KRRHSS
Trigger: GCTAGAATGTCGTCGCTTCAAAAGAAGAATGTTACT...TCTAGTTGAATCATGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTAGCAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp GTACTTGCCCTGATTTCAGGGCATTTCAAACCCTTTCAAATTTTCCTGCTACCAACTCCAGTTCTTGCATaGATTCATGCTGTCGCAATA +
Preference number: 5 (lower is better)
Translates to: VLALISGHFKPFQIFLLPTPVLA*IHAVAI
Trigger: TATTGCGACAGCATGAATCAATGCAAGAACTGGAGT...TGGTAGCAGGAAAATTTGAAAGGGTTTGAAATGCCCTGAAATCAGGGCAAGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp CTTTGTGTTGGCTATAGGTCTTCATTTTTGTACAAACAAAGCAAAGGTACTGTTGTTCCCACAAAAGAATaGGCAGGGGAAGCCATGGAA +
Preference number: 5 (lower is better)
Translates to: LCVGYRSSFLYKQSKGTVVPTKE*AGEAME
Trigger: TTCCATGGCTTCCCCTGCCAATTCTTTTGTGGGAAC...AACAGTACCTTTGCTTTGTTTGTACAAAAATGAAGACCTATAGCCAACACAAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp CCTGCTACCAGTTTTTACTGTGACCACTCCTGCTGTGTACATGATTCAACTAGATCCTTAAGCTGCTCTTaGCGAAGTTTATATTCTCTT +
Preference number: 5 (lower is better)
Translates to: PATSFYCDHSCCVHDSTRSLSCS*RSLYSL
Trigger: AAGAGAATATAAACTTCGCAAAGAGCAGCTTAAGGA...TCTAGTTGAATCATGTACACAGCAGGAGTGGTCACAGTAAAAACTGGTAGCAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp GTCAGGTTGGAACAGCCTAGGGAGTTATGTGCACTGTACTTTAAAATGGTATTTGACATGTGTGACCCATaGGATATTTGTGAAGTGACA +
Preference number: 5 (lower is better)
Translates to: VRLEQPRELCALYFKMVFDMCDP*DICEVT
Trigger: TGTCACTTCACAAATATCCAATGGGTCACACATGTC...AAATACCATTTTAAAGTACAGTGCACATAACTCCCTAGGCTGTTCCAACCTGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTAGACCATACATCAACTTaGCCATCATACTGTCCTTCA +
Preference number: 5 (lower is better)
Translates to: LIYPVGILLERINLFLYLDHTST*PSYCPS
Trigger: TGAAGGACAGTATGATGGCAAAGTTGATGTATGGTC...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp GTACTTGCCCTGATTTCAGGGCATTTCAAACCCTTTCAAATTTTCCTGCTACCATCCTTAAGCTGCTCTTaGCGAAGTTTATATTCTCTT +
Preference number: 5 (lower is better)
Translates to: VLALISGHFKPFQIFLLPSLSCS*RSLYSL
Trigger: AAGAGAATATAAACTTCGCAAAGAGCAGCTTAAGGA...TGGTAGCAGGAAAATTTGAAAGGGTTTGAAATGCCCTGAAATCAGGGCAAGTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTAACTCCAGTTCTTGCATaGATTCATGCTGTCGCAATA +
Preference number: 5 (lower is better)
Translates to: LIYPVGILLERINLFLYLTPVLA*IHAVAI
Trigger: TATTGCGACAGCATGAATCAATGCAAGAACTGGAGT...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS TCA 90 bp TGTTTCTTAATAAGTTTCTCCATTTCTGCAGCGAAATTGTTACGCTaGGTTTCAAGATCTTTGTCTAATCTGAGCCGATGTTCGTCCATC +
Preference number: 5 (lower is better)
Translates to: CFLISFSISAAKLLR*VSRSLSNLSRCSSI
Trigger: GATGGACGAACATCGGCTCAGATTAGACAAAGATCTTGAAACTCAGCGTAACAATTTCGCTGCAGAAATGGAGAAACTTATTAAGAAACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACATGCTGTTCGTATGGTaGCAAAGTGTTCTCTATTAC +
Preference number: 5 (lower is better)
Translates to: TSMITYQLADNPHLSGPDMLFVW*QSVLYY
Trigger: GTAATAGAGAACACTTTGCAACCATACGAACAGCAT...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATGTTAGTGAGCTCAGTTaGATGCTGCAGTCTGATCAA +
Preference number: 5 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYVSELS*MLQSDQ
Trigger: TTGATCAGACTGCAGCATCAAACTGAGCTCACTAAC...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp ACAAATGGAGAAATGCAAAGGTGTTCAAGTACAATGAAGTCATTTTTACAGGTGGTTAGTGAGCTCAGTTaGATGCTGCAGTCTGATCAA +
Preference number: 5 (lower is better)
Translates to: TNGEMQRCSSTMKSFLQVVSELS*MLQSDQ
Trigger: TTGATCAGACTGCAGCATCAAACTGAGCTCACTAAC...CACCTGTAAAAATGACTTCATTGTACTTGAACACCTTTGCATTTCTCCATTTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATCAGACTCTTAGGTTGTaGTCGAACTTCCATGACATG +
Preference number: 5 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYQTLRL*SNFHDM
Trigger: CATGTCATGGAAGTTCGACAACAACCTAAGAGTCTG...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp ACCTCAATGATAACATATCAGTTAGCTGATAACCCTCATTTATCTGGACCTGACTTTGTACTGTCTGGTTaGAATTTTGCAGGTATCCTG +
Preference number: 5 (lower is better)
Translates to: TSMITYQLADNPHLSGPDFVLSG*NFAGIL
Trigger: CAGGATACCTGCAAAATTCAAACCAGACAGTACAAA...GTCAGGTCCAGATAAATGAGGGTTATCAGCTAACTGATATGTTATCATTGAGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp TTAATATATCCAGTGGGCATCCTGCTGGAGAGGATTAACCTTTTCCTCTATTTAAGGATATTTCCTGCTTaGATATCTCTATGGATCATG +
Preference number: 5 (lower is better)
Translates to: LIYPVGILLERINLFLYLRIFPA*ISLWIM
Trigger: CATGATCCATAGAGATATCAAAGCAGGAAATATCCT...TAAATAGAGGAAAAGGTTAATCCTCTCCAGCAGGATGCCCACTGGATATATTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACAGTAACATTCTTCTTTaGAAGCGACGACATTCTAGC +
Preference number: 5 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYSNILL*KRRHSS
Trigger: GCTAGAATGTCGTCGCTTCAAAAGAAGAATGTTACT...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp TTTCCATATAACTGGTCTTCATGCTTTCAAGTGGCTCTAATATACCTTGGATACCTTTTCAAAACAGCTTaGTGCTCACTCTTTGGTGTA +
Preference number: 5 (lower is better)
Translates to: FPYNWSSCFQVALIYLGYLFKTA*CSLFGV
Trigger: TACACCAAAGAGTGAGCACAAAGCTGTTTTGAAAAG...GTATCCAAGGTATATTAGAGCCACTTGAAAGCATGAAGACCAGTTATATGGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp TTAATACACATTAGGACACTTCACATTCGGAACATGAGACAAATGGAGAACTATGACATGTGTGACCCATaGGATATTTGTGAAGTGACA +
Preference number: 5 (lower is better)
Translates to: LIHIRTLHIRNMRQMENYDMCDP*DICEVT
Trigger: TGTCACTTCACAAATATCCAATGGGTCACACATGTC...ATAGTTCTCCATTTGTCTCATGTTCCGAATGTGAAGTGTCCTAATGTGTATTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS-3UTR CAA 90 bp CTTTGTGTTGGCTATAGGTCTTCATTTTTGTACAAACAAAGCAAAGGTACTGTTTTTGTACTGTCTGGTTaGAATTTTGCAGGTATCCTG +
Preference number: 5 (lower is better)
Translates to: LCVGYRSSFLYKQSKGTVFVLSG*NFAGIL
Trigger: CAGGATACCTGCAAAATTCAAACCAGACAGTACAAA...AACAGTACCTTTGCTTTGTTTGTACAAAAATGAAGACCTATAGCCAACACAAAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS GCA 72 bp GCCTCAAAGCCTGGGGGCTATTGCGGACTCCCATACTaGTACCTCGAGGTACCCCTTGCATTGGCCCTGAGG +
Preference number: 6 (lower is better)
Translates to: ASKPGGYCGLPY*YLEVPLALALR
Trigger: CCTCAGGGCCAATGCAAGGGGTACCTCGAGGTAGCAGTATGGGAGTCCGCAATAGCCCCCAGGCTTTGAGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS CCA 72 bp ACCCCCAGTAGGATTGTGAGACCAACTAGAAGCTCCTaGGTAGCTGTGGCTGAATGCCTCAGGGGAGAGATT +
Preference number: 6 (lower is better)
Translates to: TPSRIVRPTRSS*VAVAECLRGEI
Trigger: AATCTCTCCCCTGAGGCATTCAGCCACAGCTACCCAGGAGCTTCTAGTTGGTCTCACAATCCTACTGGGGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS TCA 72 bp CTTGTGACGAGACACCTGAGGGGGAGACTGTGGGTCTaGTGCTCTTGTTCTAGGATCTCCTTCTTCCTGGTA +
Preference number: 6 (lower is better)
Translates to: LVTRHLRGRLWV*CSCSRISFFLV
Trigger: TACCAGGAAGAAGGAGATCCTAGAACAAGAGCATCAGACCCACAGTCTCCCCCTCAGGTGTCTCGTCACAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS GCA 72 bp CAGCTGCATCTTCAGAACCTGGCATTCTGCTTCCTGTaGTTCATCCAAACGCAGAGCTTGTGTGGAGAGCAT +
Preference number: 6 (lower is better)
Translates to: QLHLQNLAFCFL*FIQTQSLCGEH
Trigger: ATGCTCTCCACACAAGCTCTGCGTTTGGATGAAGCACAGGAAGCAGAATGCCAGGTTCTGAAGATGCAGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS TCA 72 bp TGTAAGACATGTGTGACCCATTGGATATTTGTGAAGTaGCACTCGTGCTTCTGCTCATGCCCTGTTCCGTCC +
Preference number: 6 (lower is better)
Translates to: CKTCVTHWIFVK*HSCFCSCPVPS
Trigger: GGACGGAACAGGGCATGAGCAGAAGCACGAGTGTCACTTCACAAATATCCAATGGGTCACACATGTCTTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS GCA 72 bp ACATCTCTTCTTCAATCTTTTGTTCTAAGAGCGCTCTaGGAAGGGAGACCCTCTGTTCCAGCTCTCGAAGCT +
Preference number: 6 (lower is better)
Translates to: TSLLQSFVLRAL*EGRPSVPALEA
Trigger: AGCTTCGAGAGCTGGAACAGAGGGTCTCCCTTCGCAGAGCGCTCTTAGAACAAAAGATTGAAGAAGAGATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS GCA 72 bp TGGCTTGACGCTCGAGCAGGCTACGTATTCGTTCTGTaGGTTCATTCTGCAAAGCCAACATCTCTTCTTCAA +
Preference number: 6 (lower is better)
Translates to: WLDARAGYVFVL*VHSAKPTSLLQ
Trigger: TTGAAGAAGAGATGTTGGCTTTGCAGAATGAACGCACAGAACGAATACGTAGCCTGCTCGAGCGTCAAGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS TCA 72 bp TCGTATGGTTGCAAAGTGTTCTCTATTACGATAATGTaGCTTGTGACGAGACACCTGAGGGGGAGACTGTGG +
Preference number: 6 (lower is better)
Translates to: SYGCKVFSITIM*LVTRHLRGRLW
Trigger: CCACAGTCTCCCCCTCAGGTGTCTCGTCACAAGTCACATTATCGTAATAGAGAACACTTTGCAACCATACGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS GCA 72 bp CTCTTCTTCCTGTGCTTCTACCGCTGGCCCATTATGTaGCTCCTGGAAAAGGAGTTTCTTCATCTTTCGATA +
Preference number: 6 (lower is better)
Translates to: LFFLCFYRWPIM*LLEKEFLHLSI
Trigger: TATCGAAAGATGAAGAAACTCCTTTTCCAGGAGGCACATAATGGGCCAGCGGTAGAAGCACAGGAAGAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS TCA 72 bp TCTGATGCATCTGGAAGACTATTAACACTGCTGCTTTaGCTGCTGGCACTGATAGACATACTAGGGATAGAC +
Preference number: 6 (lower is better)
Translates to: SDASGRLLTLLL*LLALIDILGID
Trigger: GTCTATCCCTAGTATGTCTATCAGTGCCAGCAGTCAAAGCAGCAGTGTTAATAGTCTTCCAGATGCATCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS TCA 72 bp CAGCCAAGATGGCTAACTTTCGAGTCTGTTCCTCCTTaGGTCTTTTCAAAACAGCTTTGTGCTCACTCTTTG +
Preference number: 6 (lower is better)
Translates to: QPRWLTFESVPP*VFSKQLCAHSL
Trigger: CAAAGAGTGAGCACAAAGCTGTTTTGAAAAGACTCAAGGAGGAACAGACTCGAAAGTTAGCCATCTTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS CAA 72 bp ACTGTATGGTCTCCCTCCATCATGTCTAGCTCACTCTaGTCATCTGATGCATCTGGAAGACTATTAACACTG +
Preference number: 6 (lower is better)
Translates to: TVWSPSIMSSSL*SSDASGRLLTL
Trigger: CAGTGTTAATAGTCTTCCAGATGCATCAGATGACAAGAGTGAGCTAGACATGATGGAGGGAGACCATACAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS GCA 72 bp TTGAGATGGCGAAACTCCAGTTCTTGCATTGATTCATaGTGTCGCAATAGCATTGCATGTTCCAAGTCCTTT +
Preference number: 6 (lower is better)
Translates to: LRWRNSSSCIDS*CRNSIACSKSF
Trigger: AAAGGACTTGGAACATGCAATGCTATTGCGACAGCATGAATCAATGCAAGAACTGGAGTTTCGCCATCTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS GCA 72 bp TCGAGCAGGCTACGTATTCGTTCTGTGCGTTCATTCTaGAAAGCCAACATCTCTTCTTCAATCTTTTGTTCT +
Preference number: 6 (lower is better)
Translates to: SSRLRIRSVRSF*KANISSSIFCS
Trigger: AGAACAAAAGATTGAAGAAGAGATGTTGGCTTTGCAGAATGAACGCACAGAACGAATACGTAGCCTGCTCGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS CAA 72 bp TCAGCCAAGATGGCTAACTTTCGAGTCTGTTCCTCCTaGAGTCTTTTCAAAACAGCTTTGTGCTCACTCTTT +
Preference number: 6 (lower is better)
Translates to: SAKMANFRVCSS*SLFKTALCSLF
Trigger: AAAGAGTGAGCACAAAGCTGTTTTGAAAAGACTCAAGGAGGAACAGACTCGAAAGTTAGCCATCTTGGCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS TCA 72 bp GTTCCAAGTTATGTCGCCCAAGTAACATTCTTCTTTTaGAGCGACGACATTCTAGCTCTAGATACTGCCTTT +
Preference number: 6 (lower is better)
Translates to: VPSYVAQVTFFF*SDDILALDTAF
Trigger: AAAGGCAGTATCTAGAGCTAGAATGTCGTCGCTTCAAAAGAAGAATGTTACTTGGGCGACATAACTTGGAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS CAA 72 bp TGTTCCAAGTTATGTCGCCCAAGTAACATTCTTCTTTaGAAGCGACGACATTCTAGCTCTAGATACTGCCTT +
Preference number: 6 (lower is better)
Translates to: CSKLCRPSNILL*KRRHSSSRYCL
Trigger: AAGGCAGTATCTAGAGCTAGAATGTCGTCGCTTCAAAAGAAGAATGTTACTTGGGCGACATAACTTGGAACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS TCA 72 bp AATTGTTACGCTGAGTTTCAAGATCTTTGTCTAATCTaGGCCGATGTTCGTCCATCTCTGCCTTCAGTTTAT +
Preference number: 6 (lower is better)
Translates to: NCYAEFQDLCLI*ADVRPSLPSVY
Trigger: ATAAACTGAAGGCAGAGATGGACGAACATCGGCTCAGATTAGACAAAGATCTTGAAACTCAGCGTAACAATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS GCA 72 bp TTTCACTTGGCCTGGTTCTGTCAGAAGGATATTTCCTaGTTTGATATCTCTATGGATCATGGTATGAGAATG +
Preference number: 6 (lower is better)
Translates to: FHLAWFCQKDIS*FDISMDHGMRM
Trigger: CATTCTCATACCATGATCCATAGAGATATCAAAGCAGGAAATATCCTTCTGACAGAACCAGGCCAAGTGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS CAA 72 bp ATTGGCCATCACTTTAGCCTCTTTTTCCATAGCAGCTaGGTGTTTCTTAATAAGTTTCTCCATTTCTGCAGC +
Preference number: 6 (lower is better)
Translates to: IGHHFSLFFHSS*VFLNKFLHFCS
Trigger: GCTGCAGAAATGGAGAAACTTATTAAGAAACACCAAGCTGCTATGGAAAAAGAGGCTAAAGTGATGGCCAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS CAA 72 bp TATTTGGAGTTCTTTAGACTTCAGACTCTTAGGTTGTaGTCGAACTTCCATGACATGTTTTCGCCTCAGTTC +
Preference number: 6 (lower is better)
Translates to: YLEFFRLQTLRL*SNFHDMFSPQF
Trigger: GAACTGAGGCGAAAACATGTCATGGAAGTTCGACAACAACCTAAGAGTCTGAAGTCTAAAGAACTCCAAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8
CDS GCA 72 bp AGCAGCTTGGTGTTTCTTAATAAGTTTCTCCATTTCTaGAGCGAAATTGTTACGCTGAGTTTCAAGATCTTT +
Preference number: 6 (lower is better)
Translates to: SSLVFLNKFLHF*SEIVTLSFKIF
Trigger: AAAGATCTTGAAACTCAGCGTAACAATTTCGCTGCAGAAATGGAGAAACTTATTAAGAAACACCAAGCTGCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017435.11
ENSMUST00000058496.8