Pregenerated sensors for TAMM41 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030316Ensembl transcript IDs: ENSMUST00000032461.12, ENSMUST00000154621.3, ENSMUST00000172495.8, ENSMUST00000174848.8
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATTGATGAGATCGCTAGTCGCACCACATCTCCACAGTCGGGGTCCTaGGCCACCTGCAGCAGAGTCTCTTCCACGTCTCTGTTTCTCCCA | + |
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Preference number: 1 (lower is better) Translates to: IDEIASRTTSPQSGS*ATCSRVSSTSLFLP Trigger: TGGGAGAAACAGAGACGTGGAAGAGACTCTGCTGCAGGTGGCTCAGGACCCCGACTGTGGAGATGTGGTGCGACTAGCGATCTCATCAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172495.8 |
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| 3UTR TCA 72 bp | ATCGCTAGTCGCACCACATCTCCACAGTCGGGGTCCTaGGCCACCTGCAGCAGAGTCTCTTCCACGTCTCTG | + |
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Preference number: 3 (lower is better) Translates to: IASRTTSPQSGS*ATCSRVSSTSL Trigger: CAGAGACGTGGAAGAGACTCTGCTGCAGGTGGCTCAGGACCCCGACTGTGGAGATGTGGTGCGACTAGCGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172495.8 |
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| 3UTR TCA 72 bp | GGAAGTCACCTGAGTAGGAGAGCCCAGCTATCTCTATaGACAGGTCTTCCTCGGAGAAGCTTTCAGGTAGCA | + |
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Preference number: 3 (lower is better) Translates to: GSHLSRRAQLSL*TGLPRRSFQVA Trigger: TGCTACCTGAAAGCTTCTCCGAGGAAGACCTGTTCATAGAGATAGCTGGGCTCTCCTACTCAGGTGACTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154621.3 |
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| CDS-3UTR TCA 90 bp | AGATCGCTAGTCGCACCACATCTCCACAGTCGGGGTCCTGAGCCACCTGCAGCAAGCTTTCAGGTAGCATaGGGCAGGCGGTGGTCACGG | + |
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Preference number: 4 (lower is better) Translates to: RSLVAPHLHSRGPEPPAASFQVA*GRRWSR Trigger: CCGTGACCACCGCCTGCCTCATGCTACCTGAAAGCT...TGCTGCAGGTGGCTCAGGACCCCGACTGTGGAGATGTGGTGCGACTAGCGATCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172495.8 |
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| CDS-3UTR GCA 90 bp | TCTATGAACAGGTCTTCCTCGGAGAAGCTTTCAGGTAGCATGAGGCAGGCGGTGAGTGAGCCAGGATCCTaGGCAGGCCCACGCCCGAGC | + |
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Preference number: 4 (lower is better) Translates to: SMNRSSSEKLSGSMRQAVSEPGS*AGPRPS Trigger: GCTCGGGCGTGGGCCTGCGCAGGATCCTGGCTCACT...CACCGCCTGCCTCATGCTACCTGAAAGCTTCTCCGAGGAAGACCTGTTCATAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154621.3 |
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| CDS-3UTR CCA 90 bp | TCTATGAACAGGTCTTCCTCGGAGAAGCTTTCAGGTAGCATGAGGCAGGCGGTGGCACTGGGTCCTGCCTaGCGATACACCGCGGAGCCG | + |
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Preference number: 4 (lower is better) Translates to: SMNRSSSEKLSGSMRQAVALGPA*RYTAEP Trigger: CGGCTCCGCGGTGTATCGCCAGGCAGGACCCAGTGC...CACCGCCTGCCTCATGCTACCTGAAAGCTTCTCCGAGGAAGACCTGTTCATAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154621.3 |
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| CDS-3UTR GCA 90 bp | ATCTCCACAGTCGGGGTCCTGAGCCACCTGCAGCAGAGTCTCTTCCACGTCTCTCCTCGCCAATCACCATaGGGAAGTCACCTGAGTAGG | + |
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Preference number: 4 (lower is better) Translates to: ISTVGVLSHLQQSLFHVSPRQSP*GSHLSR Trigger: CCTACTCAGGTGACTTCCGCATGGTGATTGGCGAGG...AGAGACGTGGAAGAGACTCTGCTGCAGGTGGCTCAGGACCCCGACTGTGGAGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172495.8 |
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| CDS-3UTR TCA 90 bp | CTGAGCCACCTGCAGCAGAGTCTCTTCCACGTCTCTGTTTCTCCCAGGAGGGTCGCCCAGCTATCTCTATaGACAGGTCTTCCTCGGAGA | + |
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Preference number: 4 (lower is better) Translates to: LSHLQQSLFHVSVSPRRVAQLSL*TGLPRR Trigger: TCTCCGAGGAAGACCTGTTCATAGAGATAGCTGGGC...GACCCTCCTGGGAGAAACAGAGACGTGGAAGAGACTCTGCTGCAGGTGGCTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172495.8 |
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| CDS-3UTR CCA 90 bp | CCGGCTTTTGGAGGCGTCCGGCGATATATAGGTTATTCCAGTTCAGGAGGTCCTTCTCCTGGTGGGCACTaGGTCCTGCCTGGCGATACA | + |
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Preference number: 4 (lower is better) Translates to: PAFGGVRRYIGYSSSGGPSPGGH*VLPGDT Trigger: TGTATCGCCAGGCAGGACCCAGTGCCCACCAGGAGA...AGGACCTCCTGAACTGGAATAACCTATATATCGCCGGACGCCTCCAAAAGCCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154621.3 |
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| CDS-3UTR TCA 90 bp | CCGGCTTTTGGAGGCGTCCGGCGATATATAGGTTATTCCAGTTCAGGAGGTCCTTGGGCCCCAAGAGTTTaGGGAAGGAGTAGTGGCTCC | + |
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Preference number: 4 (lower is better) Translates to: PAFGGVRRYIGYSSSGGPWAPRV*GRSSGS Trigger: GGAGCCACTACTCCTTCCTCAAACTCTTGGGGCCCA...AGGACCTCCTGAACTGGAATAACCTATATATCGCCGGACGCCTCCAAAAGCCGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154621.3 |
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| CDS-3UTR CCA 90 bp | GTCGCACCACATCTCCACAGTCGGGGTCCTGAGCCACCTGCAGCAGAGTCTCTTAGTGAACTGTCCTTCTaGGCTTTTATCTCCAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: VAPHLHSRGPEPPAAESLSELSF*AFISSW Trigger: CCAACTGGAGATAAAAGCCCAGAAGGACAGTTCACT...AAGAGACTCTGCTGCAGGTGGCTCAGGACCCCGACTGTGGAGATGTGGTGCGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172495.8 |
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| CDS-3UTR TCA 90 bp | TCGCACCACATCTCCACAGTCGGGGTCCTGAGCCACCTGCAGCAGAGTCTCTTCGATGTTCAACACTTTTaGTTTTTCCTCGCCAATCAC | + |
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Preference number: 4 (lower is better) Translates to: SHHISTVGVLSHLQQSLFDVQHF*FFLANH Trigger: GTGATTGGCGAGGAAAAATCAAAAGTGTTGAACATC...GAAGAGACTCTGCTGCAGGTGGCTCAGGACCCCGACTGTGGAGATGTGGTGCGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000172495.8 |
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| CDS-3UTR TCA 90 bp | TCTATGAACAGGTCTTCCTCGGAGAAGCTTTCAGGTAGCATGAGGCAGGCGGTGCCATCCCAGACCAACTaGATCTGGACCTGCATGTTA | + |
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Preference number: 4 (lower is better) Translates to: SMNRSSSEKLSGSMRQAVPSQTN*IWTCML Trigger: TAACATGCAGGTCCAGATTCAGTTGGTCTGGGATGG...CACCGCCTGCCTCATGCTACCTGAAAGCTTCTCCGAGGAAGACCTGTTCATAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154621.3 |
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| CDS-3UTR CAA 90 bp | TCGCACCACATCTCCACAGTCGGGGTCCTGAGCCACCTGCAGCAGAGTCTCTTCCGGAAATGGCCTACGTaGGGCTTCACGATGTTCAAC | + |
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Preference number: 5 (lower is better) Translates to: SHHISTVGVLSHLQQSLFRKWPT*GFTMFN Trigger: GTTGAACATCGTGAAGCCCAACGTAGGCCATTTCCG...GAAGAGACTCTGCTGCAGGTGGCTCAGGACCCCGACTGTGGAGATGTGGTGCGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172495.8 |
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| CDS TCA 90 bp | TCTTCTTCAGGTTCATCGCGTGCCAGGCAACAGGGTCGTCTACTGTaGACACTAAGTCTAACATGGGATTCTCCTGGTGGGCACTGGGTC | + |
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Preference number: 5 (lower is better) Translates to: SSSGSSRARQQGRLL*TLSLTWDSPGGHWV Trigger: GACCCAGTGCCCACCAGGAGAATCCCATGTTAGACTTAGTGTTCACAGTAGACGACCCTGTTGCCTGGCACGCGATGAACCTGAAGAAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032461.12 ENSMUST00000154621.3 ENSMUST00000174848.8 |
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| CDS-3UTR CAA 90 bp | GCCACCTGCAGCAGAGTCTCTTCCACGTCTCTGTTTCTCCCAGGAGGGTCCATGTATCTCCAGTTGGCCTaGATGCATCTTATACACCAC | + |
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Preference number: 5 (lower is better) Translates to: ATCSRVSSTSLFLPGGSMYLQLA*MHLIHH Trigger: GTGGTGTATAAGATGCATCAAGGCCAACTGGAGATA...CATGGACCCTCCTGGGAGAAACAGAGACGTGGAAGAGACTCTGCTGCAGGTGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172495.8 |
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| CDS-3UTR CAA 90 bp | GCCACCTGCAGCAGAGTCTCTTCCACGTCTCTGTTTCTCCCAGGAGGGTCCATGGGCTTTTATCTCCAGTaGGCCTTGATGCATCTTATA | + |
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Preference number: 5 (lower is better) Translates to: ATCSRVSSTSLFLPGGSMGFYLQ*ALMHLI Trigger: TATAAGATGCATCAAGGCCAACTGGAGATAAAAGCC...CATGGACCCTCCTGGGAGAAACAGAGACGTGGAAGAGACTCTGCTGCAGGTGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172495.8 |
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| CDS-3UTR CAA 90 bp | TCCACAGTCGGGGTCCTGAGCCACCTGCAGCAGAGTCTCTTCCACGTCTCTGTTCGATGTTCAACACTTTaGATTTTTCCTCGCCAATCA | + |
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Preference number: 5 (lower is better) Translates to: STVGVLSHLQQSLFHVSVRCSTL*IFPRQS Trigger: TGATTGGCGAGGAAAAATCAAAAGTGTTGAACATCG...AACAGAGACGTGGAAGAGACTCTGCTGCAGGTGGCTCAGGACCCCGACTGTGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172495.8 |
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| CDS CCA 90 bp | CCTTCTGTAATATACTCTCATAGAGCTCTCGGAAATGGCCTACGTTaGGCTTCACGATGTTCAACACTTTTGATTTTTCCTCGCCAATCA | + |
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Preference number: 5 (lower is better) Translates to: PSVIYSHRALGNGLR*ASRCSTLLIFPRQS Trigger: TGATTGGCGAGGAAAAATCAAAAGTGTTGAACATCGTGAAGCCCAACGTAGGCCATTTCCGAGAGCTCTATGAGAGTATATTACAGAAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032461.12 ENSMUST00000172495.8 |
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| CDS GCA 72 bp | CCAAACTCAGGTCCTCCGGGAAGTGAGCCAGGATCCTaGGCAGGCCCACGCCCGAGCTGTGCAGCGCCTGCA | + |
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Preference number: 6 (lower is better) Translates to: PNSGPPGSEPGS*AGPRPSCAAPA Trigger: TGCAGGCGCTGCACAGCTCGGGCGTGGGCCTGCGCAGGATCCTGGCTCACTTCCCGGAGGACCTGAGTTTGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032461.12 ENSMUST00000154621.3 ENSMUST00000174848.8 |
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| CDS CCA 72 bp | ACACTAAGTCTAACATGGGATTCTCCTGGTGGGCACTaGGTCCTGCCTGGCGATACACCGCGGAGCCGTAGG | + |
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Preference number: 6 (lower is better) Translates to: TLSLTWDSPGGH*VLPGDTPRSRR Trigger: CCTACGGCTCCGCGGTGTATCGCCAGGCAGGACCCAGTGCCCACCAGGAGAATCCCATGTTAGACTTAGTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032461.12 ENSMUST00000154621.3 ENSMUST00000174848.8 |
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| CDS CCA 72 bp | ACTGTGAACACTAAGTCTAACATGGGATTCTCCTGGTaGGCACTGGGTCCTGCCTGGCGATACACCGCGGAG | + |
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Preference number: 6 (lower is better) Translates to: TVNTKSNMGFSW*ALGPAWRYTAE Trigger: CTCCGCGGTGTATCGCCAGGCAGGACCCAGTGCCCACCAGGAGAATCCCATGTTAGACTTAGTGTTCACAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032461.12 ENSMUST00000154621.3 ENSMUST00000174848.8 |
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| CDS CCA 72 bp | TCTACTGTGAACACTAAGTCTAACATGGGATTCTCCTaGTGGGCACTGGGTCCTGCCTGGCGATACACCGCG | + |
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Preference number: 6 (lower is better) Translates to: STVNTKSNMGFS*WALGPAWRYTA Trigger: CGCGGTGTATCGCCAGGCAGGACCCAGTGCCCACCAGGAGAATCCCATGTTAGACTTAGTGTTCACAGTAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032461.12 ENSMUST00000154621.3 ENSMUST00000174848.8 |
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| CDS CAA 72 bp | TCCTCAATCAGTGTGCCAGTGCTAATAACCCCGTACTaGATAAGCTTCCCGTCACACCTGATCAGGGGGTTG | + |
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Preference number: 6 (lower is better) Translates to: SSISVPVLITPY*ISFPSHLIRGL Trigger: CAACCCCCTGATCAGGTGTGACGGGAAGCTTATCAAGTACGGGGTTATTAGCACTGGCACACTGATTGAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032461.12 ENSMUST00000174848.8 |
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| CDS CAA 90 bp | GCTCTCGGAAATGGCCTACGTTGGGCTTCACGATGTTCAACACTTTaGATTTTTCCTCGCCAATCACCATGCGGAAGTCACCTGAGTAGG | + |
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Preference number: 6 (lower is better) Translates to: ALGNGLRWASRCSTL*IFPRQSPCGSHLSR Trigger: CCTACTCAGGTGACTTCCGCATGGTGATTGGCGAGGAAAAATCAAAAGTGTTGAACATCGTGAAGCCCAACGTAGGCCATTTCCGAGAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032461.12 ENSMUST00000172495.8 |
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| CDS TCA 72 bp | GAACTGTCCTTCTGGGCTTTTATCTCCAGTTGGCCTTaGTGCATCTTATACACCACCTGGGGGTCCTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: ELSFWAFISSWP*CILYTTWGSFC Trigger: ACAGAAGGACCCCCAGGTGGTGTATAAGATGCATCAAGGCCAACTGGAGATAAAAGCCCAGAAGGACAGTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172495.8 |
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| CDS CAA 72 bp | CTGTCCTTCTGGGCTTTTATCTATCTCCAGTTGGCCTaGATGCATCTTATACACCACCTGGGGGTCCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: LSFWAFIYLQLA*MHLIHHLGVLL Trigger: CAGAAGGACCCCCAGGTGGTGTATAAGATGCATCAAGGCCAACTGGAGATAGATAAAAGCCCAGAAGGACAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032461.12 |
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| CDS CAA 72 bp | CCAGTGCTAATAACCCCGTACTTGATAAGCTGGGGCTaGTCAAATATCCAGAACCTCGGGTTCCATCCCAGA | + |
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Preference number: 6 (lower is better) Translates to: PVLITPYLISWG*SNIQNLGFHPR Trigger: TCTGGGATGGAACCCGAGGTTCTGGATATTTGACAAGCCCCAGCTTATCAAGTACGGGGTTATTAGCACTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154621.3 |
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| CDS TCA 72 bp | TGTCCTTCTGGGCTTTTATCTATCTCCAGTTGGCCTTaGTGCATCTTATACACCACCTGGGGGTCCTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: CPSGLLSISSWP*CILYTTWGSFC Trigger: ACAGAAGGACCCCCAGGTGGTGTATAAGATGCATCAAGGCCAACTGGAGATAGATAAAAGCCCAGAAGGACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032461.12 |
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| CDS TCA 72 bp | GGCTTTTATCTGAGTAGGAGAGCCCAGCTATCTCTATaGACAGGTCTTCCTCGGAGAAGCTTTCAGGTAGCA | + |
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Preference number: 6 (lower is better) Translates to: GFYLSRRAQLSL*TGLPRRSFQVA Trigger: TGCTACCTGAAAGCTTCTCCGAGGAAGACCTGTTCATAGAGATAGCTGGGCTCTCCTACTCAGATAAAAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174848.8 |
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| CDS CCA 72 bp | AGTGTGCCAGTGCTAATAACCCCGTACTTGATAAGCTaGGGCTTGTCAAATATCCAGAACCTCGGGTTCCAT | + |
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Preference number: 6 (lower is better) Translates to: SVPVLITPYLIS*GLSNIQNLGFH Trigger: ATGGAACCCGAGGTTCTGGATATTTGACAAGCCCCAGCTTATCAAGTACGGGGTTATTAGCACTGGCACACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154621.3 |
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| CDS CAA 72 bp | AGTGAACTGTCCTTCTGGGCTTTTATCTATCTCCAGTaGGCCTTGATGCATCTTATACACCACCTGGGGGTC | + |
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Preference number: 6 (lower is better) Translates to: SELSFWAFIYLQ*ALMHLIHHLGV Trigger: GACCCCCAGGTGGTGTATAAGATGCATCAAGGCCAACTGGAGATAGATAAAAGCCCAGAAGGACAGTTCACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032461.12 |
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| CDS TCA 72 bp | ATTTGCTGCTGTAGGGTTCTGGGCAGTGTCATTAGCTaGGTGAACTGTCCTTCTGGGCTTTTATCTATCTCC | + |
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Preference number: 6 (lower is better) Translates to: ICCCRVLGSVIS*VNCPSGLLSIS Trigger: GGAGATAGATAAAAGCCCAGAAGGACAGTTCACTCAGCTAATGACACTGCCCAGAACCCTACAGCAGCAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032461.12 |
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| CDS CAA 72 bp | AATGGCCTACGTTGGGCTTCACGATGTTCAACACTTTaGATTTTTCCTCGCCAATCACCATGCGGAAGTCAC | + |
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Preference number: 6 (lower is better) Translates to: NGLRWASRCSTL*IFPRQSPCGSH Trigger: GTGACTTCCGCATGGTGATTGGCGAGGAAAAATCAAAAGTGTTGAACATCGTGAAGCCCAACGTAGGCCATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032461.12 ENSMUST00000172495.8 |
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| CDS CCA 72 bp | ATATACTCTCATAGAGCTCTCGGAAATGGCCTACGTTaGGCTTCACGATGTTCAACACTTTTGATTTTTCCT | + |
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Preference number: 6 (lower is better) Translates to: IYSHRALGNGLR*ASRCSTLLIFP Trigger: AGGAAAAATCAAAAGTGTTGAACATCGTGAAGCCCAACGTAGGCCATTTCCGAGAGCTCTATGAGAGTATAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032461.12 ENSMUST00000172495.8 |
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