Pregenerated sensors for TAMALIN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000531Ensembl transcript IDs: ENSMUST00000000543.6
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTGGGACAGGACCCCCACAAGGCACGACTGACCCAGACTTTAGCCTaGTACAGCCCTCTTTGGTCCCCCAGATTTCTCCCAATTCCCAGT | + |
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Preference number: 1 (lower is better) Translates to: LGQDPHKARLTQTLA*YSPLWSPRFLPIPS Trigger: ACTGGGAATTGGGAGAAATCTGGGGGACCAAAGAGGGCTGTACCAGGCTAAAGTCTGGGTCAGTCGTGCCTTGTGGGGGTCCTGTCCCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| 3UTR CCA 90 bp | CACAAGGCACGACTGACCCAGACTTTAGCCTGGTACAGCCCTCTTTaGTCCCCCAGATTTCTCCCAATTCCCAGTGTCTATTCTCCCCCT | + |
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Preference number: 1 (lower is better) Translates to: HKARLTQTLAWYSPL*SPRFLPIPSVYSPP Trigger: AGGGGGAGAATAGACACTGGGAATTGGGAGAAATCTGGGGGACCAAAGAGGGCTGTACCAGGCTAAAGTCTGGGTCAGTCGTGCCTTGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| 3UTR CAA 90 bp | CCACAAGGCACGACTGACCCAGACTTTAGCCTGGTACAGCCCTCTTaGGTCCCCCAGATTTCTCCCAATTCCCAGTGTCTATTCTCCCCC | + |
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Preference number: 2 (lower is better) Translates to: PQGTTDPDFSLVQPS*VPQISPNSQCLFSP Trigger: GGGGGAGAATAGACACTGGGAATTGGGAGAAATCTGGGGGACCAAAGAGGGCTGTACCAGGCTAAAGTCTGGGTCAGTCGTGCCTTGTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| 3UTR CCA 72 bp | AAGACCAGAGCTAGCAAGGACCCTCTCCCGCAGCTTTaGGCTCCCGGGGTCCTTGGACCGACACTACCGCCC | + |
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Preference number: 3 (lower is better) Translates to: KTRASKDPLPQL*APGVLGPTLPP Trigger: GGGCGGTAGTGTCGGTCCAAGGACCCCGGGAGCCCAAAGCTGCGGGAGAGGGTCCTTGCTAGCTCTGGTCTT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| 3UTR TCA 72 bp | CCCAAGGCTAAGGAAGGGCTGGGGAGCCAGTATATCTaGGGAGAGGGTTTCTTGGGACAGGACCCCCACAAG | + |
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Preference number: 3 (lower is better) Translates to: PKAKEGLGSQYI*GEGFLGQDPHK Trigger: CTTGTGGGGGTCCTGTCCCAAGAAACCCTCTCCTCAGATATACTGGCTCCCCAGCCCTTCCTTAGCCTTGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| 3UTR CCA 72 bp | GACCCCCACAAGGCACGACTGACCCAGACTTTAGCCTaGTACAGCCCTCTTTGGTCCCCCAGATTTCTCCCA | + |
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Preference number: 3 (lower is better) Translates to: DPHKARLTQTLA*YSPLWSPRFLP Trigger: TGGGAGAAATCTGGGGGACCAAAGAGGGCTGTACCAGGCTAAAGTCTGGGTCAGTCGTGCCTTGTGGGGGTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| 3UTR CCA 72 bp | ATCGTGGATCTCCTCTCCCCAAGGCTAAGGAAGGGCTaGGGAGCCAGTATATCTGAGGAGAGGGTTTCTTGG | + |
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Preference number: 3 (lower is better) Translates to: IVDLLSPRLRKG*GASISEERVSW Trigger: CCAAGAAACCCTCTCCTCAGATATACTGGCTCCCCAGCCCTTCCTTAGCCTTGGGGAGAGGAGATCCACGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| 3UTR CCA 72 bp | GTGTGTGTGTGTATCTGTCTGTCTGTCTCTGTAGGGTaGGGAATGATCCATCGTGGATCTCCTCTCCCCAAG | + |
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Preference number: 3 (lower is better) Translates to: VCVCICLSVSVG*GMIHRGSPLPK Trigger: CTTGGGGAGAGGAGATCCACGATGGATCATTCCCCACCCTACAGAGACAGACAGACAGATACACACACACAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR CCA 90 bp | ACCAGAAAGACCAGAGCTAGCAAGGACCCTCTCCCGCAGCTTTGGGCTCCCGGGCGTCTGTGTCCCCTTTaGCCCGCCGCGCACCCCCGC | + |
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Preference number: 4 (lower is better) Translates to: TRKTRASKDPLPQLWAPGRLCPL*PAAHPR Trigger: GCGGGGGTGCGCGGCGGGCCAAAGGGGACACAGACG...CCCGGGAGCCCAAAGCTGCGGGAGAGGGTCCTTGCTAGCTCTGGTCTTTCTGGT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR TCA 90 bp | GTATATCTGAGGAGAGGGTTTCTTGGGACAGGACCCCCACAAGGCACGACTGACCACTGGCGCTGCGGCTaGGCGTGGAGCGAGGTGCGG | + |
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Preference number: 4 (lower is better) Translates to: VYLRRGFLGTGPPQGTTDHWRCG*AWSEVR Trigger: CCGCACCTCGCTCCACGCTCAGCCGCAGCGCCAGTG...GTCAGTCGTGCCTTGTGGGGGTCCTGTCCCAAGAAACCCTCTCCTCAGATATAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR TCA 90 bp | GAAAGACCAGAGCTAGCAAGGACCCTCTCCCGCAGCTTTGGGCTCCCGGGGTCCGCAGGGCTGGATTCATaGACTCGGCAGACGAAGGTC | + |
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Preference number: 4 (lower is better) Translates to: ERPELARTLSRSFGLPGSAGLDS*TRQTKV Trigger: GACCTTCGTCTGCCGAGTTCATGAATCCAGCCCTGC...GGACCCCGGGAGCCCAAAGCTGCGGGAGAGGGTCCTTGCTAGCTCTGGTCTTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR GCA 90 bp | GAAAGACCAGAGCTAGCAAGGACCCTCTCCCGCAGCTTTGGGCTCCCGGGGTCCGTGATAGTCCTCCAGTaGTGCGTACAGCTCCTCCCC | + |
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Preference number: 4 (lower is better) Translates to: ERPELARTLSRSFGLPGSVIVLQ*CVQLLP Trigger: GGGGAGGAGCTGTACGCAGCACTGGAGGACTATCAC...GGACCCCGGGAGCCCAAAGCTGCGGGAGAGGGTCCTTGCTAGCTCTGGTCTTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR GCA 90 bp | TCCCCAAGGCTAAGGAAGGGCTGGGGAGCCAGTATATCTGAGGAGAGGGTTTCTGCGCCACACAGGGCCTaGTCGCGGGCCTCAGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: SPRLRKGWGASISEERVSAPHRA*SRASVQ Trigger: CTGGACTGAGGCCCGCGAGCAGGCCCTGTGTGGCGC...AGAAACCCTCTCCTCAGATATACTGGCTCCCCAGCCCTTCCTTAGCCTTGGGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR GCA 90 bp | ACCAGAAAGACCAGAGCTAGCAAGGACCCTCTCCCGCAGCTTTGGGCTCCCGGGTCGACAATCTCCCGGTaGCGGATGCCTTCCACGTTG | + |
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Preference number: 4 (lower is better) Translates to: TRKTRASKDPLPQLWAPGSTISR*RMPSTL Trigger: CAACGTGGAAGGCATCCGGCACCGGGAGATTGTCGA...CCCGGGAGCCCAAAGCTGCGGGAGAGGGTCCTTGCTAGCTCTGGTCTTTCTGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR GCA 90 bp | CTCCTCTCCCCAAGGCTAAGGAAGGGCTGGGGAGCCAGTATATCTGAGGAGAGGTGCGGTACTTGGTCTTaGGTAGGCCGGCGCCACACA | + |
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Preference number: 4 (lower is better) Translates to: LLSPRLRKGWGASISEERCGTWS*VGRRHT Trigger: TGTGTGGCGCCGGCCTACGCAAGACCAAGTACCGCA...CCTCTCCTCAGATATACTGGCTCCCCAGCCCTTCCTTAGCCTTGGGGAGAGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR CCA 90 bp | ATGAACCGACCAGAAAGACCAGAGCTAGCAAGGACCCTCTCCCGCAGCTTTGGGGGAAGCTGCGGTACTTaGTCTTGCGTAGGCCGGCGC | + |
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Preference number: 4 (lower is better) Translates to: MNRPERPELARTLSRSFGGSCGT*SCVGRR Trigger: GCGCCGGCCTACGCAAGACCAAGTACCGCAGCTTCC...CCCAAAGCTGCGGGAGAGGGTCCTTGCTAGCTCTGGTCTTTCTGGTCGGTTCAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR GCA 90 bp | CTAAGGAAGGGCTGGGGAGCCAGTATATCTGAGGAGAGGGTTTCTTGGGACAGGGCCTCCTCCTTCTGCTaGAGCTTCCTGAGTCGGCGG | + |
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Preference number: 4 (lower is better) Translates to: LRKGWGASISEERVSWDRASSFC*SFLSRR Trigger: CCGCCGACTCAGGAAGCTGCAGCAGAAGGAGGAGGC...CCTGTCCCAAGAAACCCTCTCCTCAGATATACTGGCTCCCCAGCCCTTCCTTAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR GCA 90 bp | CTAAGGAAGGGCTGGGGAGCCAGTATATCTGAGGAGAGGGTTTCTTGGGACAGGGCGCGCCTCCAGTTCTaGCTTCCGAATGGACGTCCC | + |
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Preference number: 4 (lower is better) Translates to: LRKGWGASISEERVSWDRARLQF*LPNGRP Trigger: GGGACGTCCATTCGGAAGGCAGAACTGGAGGCGCGC...CCTGTCCCAAGAAACCCTCTCCTCAGATATACTGGCTCCCCAGCCCTTCCTTAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR CCA 90 bp | GGAGCCAGTATATCTGAGGAGAGGGTTTCTTGGGACAGGACCCCCACAAGGCACCCAAAGAAGCACGTGTaGTACACGGCGTCGTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: GASISEERVSWDRTPTRHPKKHV*YTASSV Trigger: CACAGACGACGCCGTGTACCACACGTGCTTCTTTGG...GTGCCTTGTGGGGGTCCTGTCCCAAGAAACCCTCTCCTCAGATATACTGGCTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR CCA 90 bp | TGGTACAGCCCTCTTTGGTCCCCCAGATTTCTCCCAATTCCCAGTGTCTATTCTGGCAATAGTGTCCCCTaGCGTGAGCCCAGCCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: WYSPLWSPRFLPIPSVYSGNSVP*REPSQL Trigger: CAGCTGGCTGGGCTCACGCCAGGGGACACTATTGCC...AGAATAGACACTGGGAATTGGGAGAAATCTGGGGGACCAAAGAGGGCTGTACCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR GCA 90 bp | TGGTACAGCCCTCTTTGGTCCCCCAGATTTCTCCCAATTCCCAGTGTCTATTCTGTCGCCTCCTCCTTCTaGTGCAGCTTCCTGAGTCGG | + |
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Preference number: 4 (lower is better) Translates to: WYSPLWSPRFLPIPSVYSVASSF*CSFLSR Trigger: CCGACTCAGGAAGCTGCAGCAGAAGGAGGAGGCGAC...AGAATAGACACTGGGAATTGGGAGAAATCTGGGGGACCAAAGAGGGCTGTACCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR GCA 90 bp | ATACAGTTTGTGGTTCAGAAGCAACATATGCAGAAAACGGTGGAACAGTCCAGGCCCGGGAAGCAAGCCTaGGCCGTAGAGGCAGGAGCG | + |
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Preference number: 4 (lower is better) Translates to: IQFVVQKQHMQKTVEQSRPGKQA*AVEAGA Trigger: CGCTCCTGCCTCTACGGCGCAGGCTTGCTTCCCGGG...CCTGGACTGTTCCACCGTTTTCTGCATATGTTGCTTCTGAACCACAAACTGTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR TCA 90 bp | AAGCCAATGAACCGACCAGAAAGACCAGAGCTAGCAAGGACCCTCTCCCGCAGCTGCTGTTCAGGACTCTaGGTGAAATTCTTCCAACGG | + |
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Preference number: 4 (lower is better) Translates to: KPMNRPERPELARTLSRSCCSGL*VKFFQR Trigger: CCGTTGGAAGAATTTCACTCAGAGTCCTGAACAGCA...GCTGCGGGAGAGGGTCCTTGCTAGCTCTGGTCTTTCTGGTCGGTTCATTGGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| 3UTR CAA 72 bp | ACGACTGACCCAGACTTTAGCCTGGTACAGCCCTCTTaGGTCCCCCAGATTTCTCCCAATTCCCAGTGTCTA | + |
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Preference number: 4 (lower is better) Translates to: TTDPDFSLVQPS*VPQISPNSQCL Trigger: TAGACACTGGGAATTGGGAGAAATCTGGGGGACCAAAGAGGGCTGTACCAGGCTAAAGTCTGGGTCAGTCGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR TCA 90 bp | GTATATCTGAGGAGAGGGTTTCTTGGGACAGGACCCCCACAAGGCACGACTGACCTCCTGTACCATAAGTaGCCTGTATTCTCCCCACTT | + |
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Preference number: 4 (lower is better) Translates to: VYLRRGFLGTGPPQGTTDLLYHK*PVFSPL Trigger: AAGTGGGGAGAATACAGGTCACTTATGGTACAGGAG...GTCAGTCGTGCCTTGTGGGGGTCCTGTCCCAAGAAACCCTCTCCTCAGATATAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR GCA 90 bp | CCAATGAACCGACCAGAAAGACCAGAGCTAGCAAGGACCCTCTCCCGCAGCTTTCCAGTGTGTCATAGATaGTTGGGTCTTTCACCACCA | + |
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Preference number: 4 (lower is better) Translates to: PMNRPERPELARTLSRSFPVCHR*LGLSPP Trigger: TGGTGGTGAAAGACCCAAGCATCTATGACACACTGG...AAAGCTGCGGGAGAGGGTCCTTGCTAGCTCTGGTCTTTCTGGTCGGTTCATTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR CCA 90 bp | TGGTACAGCCCTCTTTGGTCCCCCAGATTTCTCCCAATTCCCAGTGTCTATTCTGTTCTGCCTTCCGAATaGACGTCCCGTACAGAGTTT | + |
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Preference number: 4 (lower is better) Translates to: WYSPLWSPRFLPIPSVYSVLPSE*TSRTEF Trigger: AAACTCTGTACGGGACGTCCATTCGGAAGGCAGAAC...AGAATAGACACTGGGAATTGGGAGAAATCTGGGGGACCAAAGAGGGCTGTACCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR CCA 90 bp | TGGTACAGCCCTCTTTGGTCCCCCAGATTTCTCCCAATTCCCAGTGTCTATTCTTGTGTCATAGATGCTTaGGTCTTTCACCACCAGGCC | + |
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Preference number: 4 (lower is better) Translates to: WYSPLWSPRFLPIPSVYSCVIDA*VFHHQA Trigger: GGCCTGGTGGTGAAAGACCCAAGCATCTATGACACA...AGAATAGACACTGGGAATTGGGAGAAATCTGGGGGACCAAAGAGGGCTGTACCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR TCA 90 bp | ACAGTTTGTGGTTCAGAAGCAACATATGCAGAAAACGGTGGAACAGTCCAGGCTGTTCAGGACTCTGAGTaGAATTCTTCCAACGGAATC | + |
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Preference number: 4 (lower is better) Translates to: TVCGSEATYAENGGTVQAVQDSE*NSSNGI Trigger: GATTCCGTTGGAAGAATTTCACTCAGAGTCCTGAAC...AGCCTGGACTGTTCCACCGTTTTCTGCATATGTTGCTTCTGAACCACAAACTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS GCA 90 bp | GCCCGCGCACCGCACACTGGCGCTGCGGCTGAGCGTGGAGCGAGGTaGGGGAAACAGCACGGACGCGGGGGTCTCCGCGGAGCTCGGGCC | + |
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Preference number: 5 (lower is better) Translates to: ARAPHTGAAAERGAR*GKQHGRGGLRGARA Trigger: GGCCCGAGCTCCGCGGAGACCCCCGCGTCCGTGCTGTTTCCCGCACCTCGCTCCACGCTCAGCCGCAGCGCCAGTGTGCGGTGCGCGGGC 77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS GCA 90 bp | GGCGAGCGCGCGGTACAGCTCGGCAGGGTGATAGTCCTCCAGTGCTaGGTACAGCTCCTCCCCGGGGGCTCCGGGCGGAGCGGCGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: GERAVQLGRVIVLQC*VQLLPGGSGRSGGS Trigger: GCTGCCGCCGCTCCGCCCGGAGCCCCCGGGGAGGAGCTGTACGCAGCACTGGAGGACTATCACCCTGCCGAGCTGTACCGCGCGCTCGCC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS GCA 90 bp | CACGGCGAGCGCGCGGTACAGCTCGGCAGGGTGATAGTCCTCCAGTaGTGCGTACAGCTCCTCCCCGGGGGCTCCGGGCGGAGCGGCGGC | + |
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Preference number: 5 (lower is better) Translates to: HGERAVQLGRVIVLQ*CVQLLPGGSGRSGG Trigger: GCCGCCGCTCCGCCCGGAGCCCCCGGGGAGGAGCTGTACGCAGCACTGGAGGACTATCACCCTGCCGAGCTGTACCGCGCGCTCGCCGTG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS GCA 90 bp | AAGCTGCGGTACTTGGTCTTGCGTAGGCCGGCGCCACACAGGGCCTaGTCGCGGGCCTCAGTCCAGAGTGCGCCCGGCGCGCCCCCGCCG | + |
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Preference number: 5 (lower is better) Translates to: KLRYLVLRRPAPHRA*SRASVQSAPGAPPP Trigger: CGGCGGGGGCGCGCCGGGCGCACTCTGGACTGAGGCCCGCGAGCAGGCCCTGTGTGGCGCCGGCCTACGCAAGACCAAGTACCGCAGCTT 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS GCA 90 bp | CGCGGCGAGCAGAGGCCCAAAGGGCAGCGACCCGGGAAGCAAGCCTaGGCCGTAGAGGCAGGAGCGCACGGACTCCAGTGTGTCATAGAT | + |
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Preference number: 5 (lower is better) Translates to: RGEQRPKGQRPGKQA*AVEAGAHGLQCVID Trigger: ATCTATGACACACTGGAGTCCGTGCGCTCCTGCCTCTACGGCGCAGGCTTGCTTCCCGGGTCGCTGCCCTTTGGGCCTCTGCTCGCCGCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR CAA 90 bp | CTGTCTGTCTGTCTCTGTAGGGTGGGGAATGATCCATCGTGGATCTCCTCTCCCTCGTCTGTGTCCCCTTaGGCCCGCCGCGCACCCCCG | + |
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Preference number: 5 (lower is better) Translates to: LSVCLCRVGNDPSWISSPSSVSP*ARRAPP Trigger: CGGGGGTGCGCGGCGGGCCAAAGGGGACACAGACGA...GGGAGAGGAGATCCACGATGGATCATTCCCCACCCTACAGAGACAGACAGACAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS GCA 90 bp | CTGCGCCGTAGAGGCAGGAGCGCACGGACTCCAGTGTGTCATAGATaGTTGGGTCTTTCACCACCAGGCCATGTACTAGCCGCTGCTCCT | + |
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Preference number: 5 (lower is better) Translates to: LRRRGRSARTPVCHR*LGLSPPGHVLAAAP Trigger: AGGAGCAGCGGCTAGTACATGGCCTGGTGGTGAAAGACCCAAGCATCTATGACACACTGGAGTCCGTGCGCTCCTGCCTCTACGGCGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR CAA 90 bp | AAGCCAATGAACCGACCAGAAAGACCAGAGCTAGCAAGGACCCTCTCCCGCAGCCGGATGCCTTCCACGTaGAGACCGTTGACGCTGGCA | + |
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Preference number: 5 (lower is better) Translates to: KPMNRPERPELARTLSRSRMPST*RPLTLA Trigger: TGCCAGCGTCAACGGTCTCAACGTGGAAGGCATCCG...GCTGCGGGAGAGGGTCCTTGCTAGCTCTGGTCTTTCTGGTCGGTTCATTGGCTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR CAA 90 bp | ATGAACCGACCAGAAAGACCAGAGCTAGCAAGGACCCTCTCCCGCAGCTTTGGGAGTCCGGGGATGAACTaGAGCAGCCGTCTGCGGAAG | + |
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Preference number: 5 (lower is better) Translates to: MNRPERPELARTLSRSFGSPGMN*SSRLRK Trigger: CTTCCGCAGACGGCTGCTCAAGTTCATCCCCGGACT...CCCAAAGCTGCGGGAGAGGGTCCTTGCTAGCTCTGGTCTTTCTGGTCGGTTCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS GCA 90 bp | CTCGTACAGGGTTTGCTTAAGGTACTGCAGGCGCGCCTCCAGTTCTaGCTTCCGAATGGACGTCCCGTACAGAGTTTCCAGCCTGAGAAC | + |
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Preference number: 5 (lower is better) Translates to: LVQGLLKVLQARLQF*LPNGRPVQSFQPEN Trigger: GTTCTCAGGCTGGAAACTCTGTACGGGACGTCCATTCGGAAGGCAGAACTGGAGGCGCGCCTGCAGTACCTTAAGCAAACCCTGTACGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR CAA 90 bp | GTGTGTGTGTGTGTGTGTGTGTATCTGTCTGTCTGTCTCTGTAGGGTGGGGAATCGGAAGCTGCGGTACTaGGTCTTGCGTAGGCCGGCG | + |
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Preference number: 5 (lower is better) Translates to: VCVCVCVYLSVCLCRVGNRKLRY*VLRRPA Trigger: CGCCGGCCTACGCAAGACCAAGTACCGCAGCTTCCG...ATTCCCCACCCTACAGAGACAGACAGACAGATACACACACACACACACACACAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS GCA 90 bp | CTGAGAACGTTGCCAGACGCCTTGATGATATCGACAATCTCCCGGTaGCGGATGCCTTCCACGTTGAGACCGTTGACGCTGGCAATAGTG | + |
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Preference number: 5 (lower is better) Translates to: LRTLPDALMISTISR*RMPSTLRPLTLAIV Trigger: CACTATTGCCAGCGTCAACGGTCTCAACGTGGAAGGCATCCGGCACCGGGAGATTGTCGATATCATCAAGGCGTCTGGCAACGTTCTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR CAA 90 bp | CCAATGAACCGACCAGAAAGACCAGAGCTAGCAAGGACCCTCTCCCGCAGCTTTGTGTGTCATAGATGCTaGGGTCTTTCACCACCAGGC | + |
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Preference number: 5 (lower is better) Translates to: PMNRPERPELARTLSRSFVCHRC*GLSPPG Trigger: GCCTGGTGGTGAAAGACCCAAGCATCTATGACACAC...AAAGCTGCGGGAGAGGGTCCTTGCTAGCTCTGGTCTTTCTGGTCGGTTCATTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR CAA 90 bp | ACAGTTTGTGGTTCAGAAGCAACATATGCAGAAAACGGTGGAACAGTCCAGGCTCTGCGGTACTTGGTCTaGCGTAGGCCGGCGCCACAC | + |
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Preference number: 5 (lower is better) Translates to: TVCGSEATYAENGGTVQALRYLV*RRPAPH Trigger: GTGTGGCGCCGGCCTACGCAAGACCAAGTACCGCAG...AGCCTGGACTGTTCCACCGTTTTCTGCATATGTTGCTTCTGAACCACAAACTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR CAA 90 bp | GTGTGTGTGTGTGTGTGTGTGTATCTGTCTGTCTGTCTCTGTAGGGTGGGGAATTCCTCCAGGGAGCGGTaGAGTCCGGGGATGAACTTG | + |
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Preference number: 5 (lower is better) Translates to: VCVCVCVYLSVCLCRVGNSSRER*SPGMNL Trigger: CAAGTTCATCCCCGGACTCAACCGCTCCCTGGAGGA...ATTCCCCACCCTACAGAGACAGACAGACAGATACACACACACACACACACACAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS TCA 90 bp | CTTTCTCCAAAGTTAGAACCTTCCGTTGCTGTTCAGGACTCTGAGTaGAATTCTTCCAACGGAATCCTGAGCCCTTTCGGCGAGGCAGGG | + |
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Preference number: 5 (lower is better) Translates to: LSPKLEPSVAVQDSE*NSSNGILSPFGEAG Trigger: CCCTGCCTCGCCGAAAGGGCTCAGGATTCCGTTGGAAGAATTTCACTCAGAGTCCTGAACAGCAACGGAAGGTTCTAACTTTGGAGAAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS TCA 90 bp | TCCCCTTTCTCCAAAGTTAGAACCTTCCGTTGCTGTTCAGGACTCTaGGTGAAATTCTTCCAACGGAATCCTGAGCCCTTTCGGCGAGGC | + |
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Preference number: 5 (lower is better) Translates to: SPFSKVRTFRCCSGL*VKFFQRNPEPFRRG Trigger: GCCTCGCCGAAAGGGCTCAGGATTCCGTTGGAAGAATTTCACTCAGAGTCCTGAACAGCAACGGAAGGTTCTAACTTTGGAGAAAGGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS-3UTR CAA 90 bp | TGGTACAGCCCTCTTTGGTCCCCCAGATTTCTCCCAATTCCCAGTGTCTATTCTAAGCCAAAGGTCTGGTaGTCCCCTTTCTCCAAAGTT | + |
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Preference number: 5 (lower is better) Translates to: WYSPLWSPRFLPIPSVYSKPKVW*SPFSKV Trigger: AACTTTGGAGAAAGGGGACAACCAGACCTTTGGCTT...AGAATAGACACTGGGAATTGGGAGAAATCTGGGGGACCAAAGAGGGCTGTACCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS TCA 72 bp | CGCCCGGGCCCGCGCACCGCACACTGGCGCTGCGGCTaGGCGTGGAGCGAGGTGCGGGAAACAGCACGGACG | + |
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Preference number: 6 (lower is better) Translates to: RPGPRTAHWRCG*AWSEVRETART Trigger: CGTCCGTGCTGTTTCCCGCACCTCGCTCCACGCTCAGCCGCAGCGCCAGTGTGCGGTGCGCGGGCCCGGGCG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS GCA 72 bp | CCGCACACTGGCGCTGCGGCTGAGCGTGGAGCGAGGTaGGGGAAACAGCACGGACGCGGGGGTCTCCGCGGA | + |
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Preference number: 6 (lower is better) Translates to: PHTGAAAERGAR*GKQHGRGGLRG Trigger: TCCGCGGAGACCCCCGCGTCCGTGCTGTTTCCCGCACCTCGCTCCACGCTCAGCCGCAGCGCCAGTGTGCGG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS CCA 72 bp | AGCACGTGTGGTACACGGCGTCGTCTGTGTCCCCTTTaGCCCGCCGCGCACCCCCGCGGGCACTCCCAGGCG | + |
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Preference number: 6 (lower is better) Translates to: STCGTRRRLCPL*PAAHPRGHSQA Trigger: CGCCTGGGAGTGCCCGCGGGGGTGCGCGGCGGGCCAAAGGGGACACAGACGACGCCGTGTACCACACGTGCT 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS GCA 72 bp | TACTTGGTCTTGCGTAGGCCGGCGCCACACAGGGCCTaGTCGCGGGCCTCAGTCCAGAGTGCGCCCGGCGCG | + |
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Preference number: 6 (lower is better) Translates to: YLVLRRPAPHRA*SRASVQSAPGA Trigger: CGCGCCGGGCGCACTCTGGACTGAGGCCCGCGAGCAGGCCCTGTGTGGCGCCGGCCTACGCAAGACCAAGTA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS CAA 72 bp | AAGCACGTGTGGTACACGGCGTCGTCTGTGTCCCCTTaGGCCCGCCGCGCACCCCCGCGGGCACTCCCAGGC | + |
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Preference number: 6 (lower is better) Translates to: KHVWYTASSVSP*ARRAPPRALPG Trigger: GCCTGGGAGTGCCCGCGGGGGTGCGCGGCGGGCCAAAGGGGACACAGACGACGCCGTGTACCACACGTGCTT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS GCA 72 bp | GCGGTACAGCTCGGCAGGGTGATAGTCCTCCAGTGCTaGGTACAGCTCCTCCCCGGGGGCTCCGGGCGGAGC | + |
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Preference number: 6 (lower is better) Translates to: AVQLGRVIVLQC*VQLLPGGSGRS Trigger: GCTCCGCCCGGAGCCCCCGGGGAGGAGCTGTACGCAGCACTGGAGGACTATCACCCTGCCGAGCTGTACCGC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS CAA 90 bp | AGTCCGGGGATGAACTTGAGCAGCCGTCTGCGGAAGCTGCGGTACTaGGTCTTGCGTAGGCCGGCGCCACACAGGGCCTGCTCGCGGGCC | + |
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Preference number: 6 (lower is better) Translates to: SPGMNLSSRLRKLRY*VLRRPAPHRACSRA Trigger: GGCCCGCGAGCAGGCCCTGTGTGGCGCCGGCCTACGCAAGACCAAGTACCGCAGCTTCCGCAGACGGCTGCTCAAGTTCATCCCCGGACT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS GCA 72 bp | CAGAGGCCCAAAGGGCAGCGACCCGGGAAGCAAGCCTaGGCCGTAGAGGCAGGAGCGCACGGACTCCAGTGT | + |
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Preference number: 6 (lower is better) Translates to: QRPKGQRPGKQA*AVEAGAHGLQC Trigger: ACACTGGAGTCCGTGCGCTCCTGCCTCTACGGCGCAGGCTTGCTTCCCGGGTCGCTGCCCTTTGGGCCTCTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS CCA 72 bp | AGTGCCTGCGGCTCGGCGCCCCCAAAGAAGCACGTGTaGTACACGGCGTCGTCTGTGTCCCCTTTGGCCCGC | + |
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Preference number: 6 (lower is better) Translates to: SACGSAPPKKHV*YTASSVSPLAR Trigger: GCGGGCCAAAGGGGACACAGACGACGCCGTGTACCACACGTGCTTCTTTGGGGGCGCCGAGCCGCAGGCACT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS CAA 72 bp | TTGAGCAGCCGTCTGCGGAAGCTGCGGTACTTGGTCTaGCGTAGGCCGGCGCCACACAGGGCCTGCTCGCGG | + |
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Preference number: 6 (lower is better) Translates to: LSSRLRKLRYLV*RRPAPHRACSR Trigger: CCGCGAGCAGGCCCTGTGTGGCGCCGGCCTACGCAAGACCAAGTACCGCAGCTTCCGCAGACGGCTGCTCAA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS CAA 90 bp | GGGATGAACTTGAGCAGCCGTCTGCGGAAGCTGCGGTACTTGGTCTaGCGTAGGCCGGCGCCACACAGGGCCTGCTCGCGGGCCTCAGTC | + |
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Preference number: 6 (lower is better) Translates to: GMNLSSRLRKLRYLV*RRPAPHRACSRASV Trigger: GACTGAGGCCCGCGAGCAGGCCCTGTGTGGCGCCGGCCTACGCAAGACCAAGTACCGCAGCTTCCGCAGACGGCTGCTCAAGTTCATCCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS CAA 72 bp | ATGAACTTGAGCAGCCGTCTGCGGAAGCTGCGGTACTaGGTCTTGCGTAGGCCGGCGCCACACAGGGCCTGC | + |
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Preference number: 6 (lower is better) Translates to: MNLSSRLRKLRY*VLRRPAPHRAC Trigger: GCAGGCCCTGTGTGGCGCCGGCCTACGCAAGACCAAGTACCGCAGCTTCCGCAGACGGCTGCTCAAGTTCAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS CAA 72 bp | ATCTCCCGGTGCCGGATGCCTTCCACGTTGAGACCGTaGACGCTGGCAATAGTGTCCCCTGGCGTGAGCCCA | + |
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Preference number: 6 (lower is better) Translates to: ISRCRMPSTLRP*TLAIVSPGVSP Trigger: TGGGCTCACGCCAGGGGACACTATTGCCAGCGTCAACGGTCTCAACGTGGAAGGCATCCGGCACCGGGAGAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS CAA 90 bp | ATATCGACAATCTCCCGGTGCCGGATGCCTTCCACGTTGAGACCGTaGACGCTGGCAATAGTGTCCCCTGGCGTGAGCCCAGCCAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: ISTISRCRMPSTLRP*TLAIVSPGVSPASW Trigger: CCAGCTGGCTGGGCTCACGCCAGGGGACACTATTGCCAGCGTCAACGGTCTCAACGTGGAAGGCATCCGGCACCGGGAGATTGTCGATAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS CAA 90 bp | TGGCTCTCCTCTTCCTCCAGGGAGCGGTTGAGTCCGGGGATGAACTaGAGCAGCCGTCTGCGGAAGCTGCGGTACTTGGTCTTGCGTAGG | + |
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Preference number: 6 (lower is better) Translates to: WLSSSSRERLSPGMN*SSRLRKLRYLVLRR Trigger: CCTACGCAAGACCAAGTACCGCAGCTTCCGCAGACGGCTGCTCAAGTTCATCCCCGGACTCAACCGCTCCCTGGAGGAAGAGGAGAGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS CAA 72 bp | TCTTCCTCCAGGGAGCGGTTGAGTCCGGGGATGAACTaGAGCAGCCGTCTGCGGAAGCTGCGGTACTTGGTC | + |
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Preference number: 6 (lower is better) Translates to: SSSRERLSPGMN*SSRLRKLRYLV Trigger: GACCAAGTACCGCAGCTTCCGCAGACGGCTGCTCAAGTTCATCCCCGGACTCAACCGCTCCCTGGAGGAAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS CAA 90 bp | GCCTTGATGATATCGACAATCTCCCGGTGCCGGATGCCTTCCACGTaGAGACCGTTGACGCTGGCAATAGTGTCCCCTGGCGTGAGCCCA | + |
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Preference number: 6 (lower is better) Translates to: ALMISTISRCRMPST*RPLTLAIVSPGVSP Trigger: TGGGCTCACGCCAGGGGACACTATTGCCAGCGTCAACGGTCTCAACGTGGAAGGCATCCGGCACCGGGAGATTGTCGATATCATCAAGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS CAA 90 bp | CGCCGTAGAGGCAGGAGCGCACGGACTCCAGTGTGTCATAGATGCTaGGGTCTTTCACCACCAGGCCATGTACTAGCCGCTGCTCCTGTA | + |
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Preference number: 6 (lower is better) Translates to: RRRGRSARTPVCHRC*GLSPPGHVLAAAPV Trigger: TACAGGAGCAGCGGCTAGTACATGGCCTGGTGGTGAAAGACCCAAGCATCTATGACACACTGGAGTCCGTGCGCTCCTGCCTCTACGGCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS CAA 72 bp | ATATCGACAATCTCCCGGTGCCGGATGCCTTCCACGTaGAGACCGTTGACGCTGGCAATAGTGTCCCCTGGC | + |
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Preference number: 6 (lower is better) Translates to: ISTISRCRMPST*RPLTLAIVSPG Trigger: GCCAGGGGACACTATTGCCAGCGTCAACGGTCTCAACGTGGAAGGCATCCGGCACCGGGAGATTGTCGATAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS CAA 72 bp | GGCAGGAGCGCACGGACTCCAGTGTGTCATAGATGCTaGGGTCTTTCACCACCAGGCCATGTACTAGCCGCT | + |
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Preference number: 6 (lower is better) Translates to: GRSARTPVCHRC*GLSPPGHVLAA Trigger: AGCGGCTAGTACATGGCCTGGTGGTGAAAGACCCAAGCATCTATGACACACTGGAGTCCGTGCGCTCCTGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS CAA 90 bp | GACGTCCCGTACAGAGTTTCCAGCCTGAGAACGTTGCCAGACGCCTaGATGATATCGACAATCTCCCGGTGCCGGATGCCTTCCACGTTG | + |
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Preference number: 6 (lower is better) Translates to: DVPYRVSSLRTLPDA*MISTISRCRMPSTL Trigger: CAACGTGGAAGGCATCCGGCACCGGGAGATTGTCGATATCATCAAGGCGTCTGGCAACGTTCTCAGGCTGGAAACTCTGTACGGGACGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS CAA 90 bp | GCCTTCCGAATGGACGTCCCGTACAGAGTTTCCAGCCTGAGAACGTaGCCAGACGCCTTGATGATATCGACAATCTCCCGGTGCCGGATG | + |
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Preference number: 6 (lower is better) Translates to: AFRMDVPYRVSSLRT*PDALMISTISRCRM Trigger: CATCCGGCACCGGGAGATTGTCGATATCATCAAGGCGTCTGGCAACGTTCTCAGGCTGGAAACTCTGTACGGGACGTCCATTCGGAAGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS GCA 72 bp | TTGCCAGACGCCTTGATGATATCGACAATCTCCCGGTaGCGGATGCCTTCCACGTTGAGACCGTTGACGCTG | + |
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Preference number: 6 (lower is better) Translates to: LPDALMISTISR*RMPSTLRPLTL Trigger: CAGCGTCAACGGTCTCAACGTGGAAGGCATCCGGCACCGGGAGATTGTCGATATCATCAAGGCGTCTGGCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS GCA 72 bp | GGTTTGCTTAAGGTACTGCAGGCGCGCCTCCAGTTCTaGCTTCCGAATGGACGTCCCGTACAGAGTTTCCAG | + |
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Preference number: 6 (lower is better) Translates to: GLLKVLQARLQF*LPNGRPVQSFQ Trigger: CTGGAAACTCTGTACGGGACGTCCATTCGGAAGGCAGAACTGGAGGCGCGCCTGCAGTACCTTAAGCAAACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS CAA 72 bp | TACAGAGTTTCCAGCCTGAGAACGTTGCCAGACGCCTaGATGATATCGACAATCTCCCGGTGCCGGATGCCT | + |
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Preference number: 6 (lower is better) Translates to: YRVSSLRTLPDA*MISTISRCRMP Trigger: AGGCATCCGGCACCGGGAGATTGTCGATATCATCAAGGCGTCTGGCAACGTTCTCAGGCTGGAAACTCTGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS CAA 72 bp | AGGCCATATGTCTGGATCTCGAAGCCAAAGGTCTGGTaGTCCCCTTTCTCCAAAGTTAGAACCTTCCGTTGC | + |
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Preference number: 6 (lower is better) Translates to: RPYVWISKPKVW*SPFSKVRTFRC Trigger: GCAACGGAAGGTTCTAACTTTGGAGAAAGGGGACAACCAGACCTTTGGCTTCGAGATCCAGACATATGGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS TCA 72 bp | AAGTTAGAACCTTCCGTTGCTGTTCAGGACTCTGAGTaGAATTCTTCCAACGGAATCCTGAGCCCTTTCGGC | + |
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Preference number: 6 (lower is better) Translates to: KLEPSVAVQDSE*NSSNGILSPFG Trigger: GCCGAAAGGGCTCAGGATTCCGTTGGAAGAATTTCACTCAGAGTCCTGAACAGCAACGGAAGGTTCTAACTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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| CDS TCA 72 bp | TCCAAAGTTAGAACCTTCCGTTGCTGTTCAGGACTCTaGGTGAAATTCTTCCAACGGAATCCTGAGCCCTTT | + |
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Preference number: 6 (lower is better) Translates to: SKVRTFRCCSGL*VKFFQRNPEPF Trigger: AAAGGGCTCAGGATTCCGTTGGAAGAATTTCACTCAGAGTCCTGAACAGCAACGGAAGGTTCTAACTTTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000543.6 |
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