Pregenerated sensors for TAL2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028417Ensembl transcript IDs: ENSMUST00000030124.4
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATTCCACAGAGGTCAAAGGAGGCTTTCCACACACATAATCCTCACTaGTCTGCTCCAGAGGGGCATCCCTCCAGGGAGGGCCGGCCCCAT | + |
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Preference number: 1 (lower is better) Translates to: IPQRSKEAFHTHNPH*SAPEGHPSREGRPH Trigger: ATGGGGCCGGCCCTCCCTGGAGGGATGCCCCTCTGGAGCAGAGCAGTGAGGATTATGTGTGTGGAAAGCCTCCTTTGACCTCTGTGGAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR CCA 90 bp | CCAGGGAGGGCCGGCCCCATGGCTCTCCCGGGTTGGTTTCCACAGTaGCTAACTCTTCACTCATCAGTCTTAACATGTATTTGCCTCCCA | + |
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Preference number: 1 (lower is better) Translates to: PGRAGPMALPGWFPQ*LTLHSSVLTCICLP Trigger: TGGGAGGCAAATACATGTTAAGACTGATGAGTGAAGAGTTAGCCACTGTGGAAACCAACCCGGGAGAGCCATGGGGCCGGCCCTCCCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR TCA 90 bp | CTGTTCATCACTTTGTCACTTCCGGTGTCATACCTCGCCACAGCATaGAATCACGTGACTCTTCAACCAGTGCTGCCCTGGGGGCTGACT | + |
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Preference number: 1 (lower is better) Translates to: LFITLSLPVSYLATA*NHVTLQPVLPWGLT Trigger: AGTCAGCCCCCAGGGCAGCACTGGTTGAAGAGTCACGTGATTTCATGCTGTGGCGAGGTATGACACCGGAAGTGACAAAGTGATGAACAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR TCA 90 bp | TCATTTCATTTGGTGTCCTTGGAGCACTTCAGGGAAGGCCCTCTCTaGGCACAGACGAAAGGCCCAGCAAGCAGGGAAAAGAGCATTCTG | + |
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Preference number: 1 (lower is better) Translates to: SFHLVSLEHFREGPL*AQTKGPASREKSIL Trigger: CAGAATGCTCTTTTCCCTGCTTGCTGGGCCTTTCGTCTGTGCTCAGAGAGGGCCTTCCCTGAAGTGCTCCAAGGACACCAAATGAAATGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR CCA 90 bp | CACAGACGAAAGGCCCAGCAAGCAGGGAAAAGAGCATTCTGTGTATaGCACAAAAGTCCTGCATTTAGGGACAGAGGTCCTCTCTGCCTT | + |
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Preference number: 1 (lower is better) Translates to: HRRKAQQAGKRAFCV*HKSPAFRDRGPLCL Trigger: AAGGCAGAGAGGACCTCTGTCCCTAAATGCAGGACTTTTGTGCCATACACAGAATGCTCTTTTCCCTGCTTGCTGGGCCTTTCGTCTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR CCA 90 bp | GTTTGTGGTGATGACTGCAAGATCCACAGTGTGCTACTGATTTACTaGGTGCTACTCTGCCCCAGCTTAAGGATGAGGAAATGCTCTGTG | + |
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Preference number: 1 (lower is better) Translates to: VCGDDCKIHSVLLIY*VLLCPSLRMRKCSV Trigger: CACAGAGCATTTCCTCATCCTTAAGCTGGGGCAGAGTAGCACCCAGTAAATCAGTAGCACACTGTGGATCTTGCAGTCATCACCACAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR-3UTR CCA 90 bp | GGGCATCCCTCCAGGGAGGGCCGGCCCCATGGCTCTCCCGGGTTGGTTTCCACACAACCAGTGCTGCCCTaGGGGCTGACTGTCACCACC | + |
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Preference number: 2 (lower is better) Translates to: GHPSREGRPHGSPGLVSTQPVLP*GLTVTT Trigger: GGTGGTGACAGTCAGCCCCCAGGGCAGCACTGGTTG...TGTGGAAACCAACCCGGGAGAGCCATGGGGCCGGCCCTCCCTGGAGGGATGCCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR-3UTR CCA 90 bp | AAAGGCCCAGCAAGCAGGGAAAAGAGCATTCTGTGTATGGCACAAAAGTCCTGCGGAGGGCCGGCCCCATaGCTCTCCCGGGTTGGTTTC | + |
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Preference number: 2 (lower is better) Translates to: KGPASREKSILCMAQKSCGGPAP*LSRVGF Trigger: GAAACCAACCCGGGAGAGCCATGGGGCCGGCCCTCC...GCAGGACTTTTGTGCCATACACAGAATGCTCTTTTCCCTGCTTGCTGGGCCTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR-3UTR TCA 90 bp | CCTCTGCGGATGCCCCGAGACCTTTGGAAAGCCATTCTGAAACTCCCTGGACCTGTGACTATTTGGGCCTaGTGTAATAACAACTCTCCT | + |
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Preference number: 2 (lower is better) Translates to: PLRMPRDLWKAILKLPGPVTIWA*CNNNSP Trigger: AGGAGAGTTGTTATTACATCAGGCCCAAATAGTCAC...AGGTCCAGGGAGTTTCAGAATGGCTTTCCAAAGGTCTCGGGGCATCCGCAGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR-3UTR CCA 90 bp | CCTCTGCGGATGCCCCGAGACCTTTGGAAAGCCATTCTGAAACTCCCTGGACCTTTCTTCTCTGTGAAGTaGAGTAACCAAGCAGAGTCT | + |
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Preference number: 2 (lower is better) Translates to: PLRMPRDLWKAILKLPGPFFSVK*SNQAES Trigger: AGACTCTGCTTGGTTACTCCACTTCACAGAGAAGAA...AGGTCCAGGGAGTTTCAGAATGGCTTTCCAAAGGTCTCGGGGCATCCGCAGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR-3UTR TCA 90 bp | CCTCTGCGGATGCCCCGAGACCTTTGGAAAGCCATTCTGAAACTCCCTGGACCTTCTGTTAGACTCAAATaGCCCATAAACAGATGTAGC | + |
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Preference number: 2 (lower is better) Translates to: PLRMPRDLWKAILKLPGPSVRLK*PINRCS Trigger: GCTACATCTGTTTATGGGTCATTTGAGTCTAACAGA...AGGTCCAGGGAGTTTCAGAATGGCTTTCCAAAGGTCTCGGGGCATCCGCAGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR-3UTR GCA 90 bp | AAAGGCCCAGCAAGCAGGGAAAAGAGCATTCTGTGTATGGCACAAAAGTCCTGCCTTTCAGCTCTCAGCTaGTGTTCATCACTTTGTCAC | + |
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Preference number: 2 (lower is better) Translates to: KGPASREKSILCMAQKSCLSALS*CSSLCH Trigger: GTGACAAAGTGATGAACAGCAGCTGAGAGCTGAAAG...GCAGGACTTTTGTGCCATACACAGAATGCTCTTTTCCCTGCTTGCTGGGCCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR-3UTR GCA 90 bp | CCCAGCAAGCAGGGAAAAGAGCATTCTGTGTATGGCACAAAAGTCCTGCATTTAGTTTGTGGTGATGACTaGAAGATCCACAGTGTGCTA | + |
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Preference number: 2 (lower is better) Translates to: PSKQGKEHSVYGTKVLHLVCGDD*KIHSVL Trigger: TAGCACACTGTGGATCTTGCAGTCATCACCACAAAC...TAAATGCAGGACTTTTGTGCCATACACAGAATGCTCTTTTCCCTGCTTGCTGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR-3UTR TCA 90 bp | GTCCTCATTACTGATGTCATGAGCGAAACAGCAGTTTTAAACTTACGGCTGTTTCAGCATGAAATCACGTaGCTCTTCAACCAGTGCTGC | + |
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Preference number: 2 (lower is better) Translates to: VLITDVMSETAVLNLRLFQHEIT*LFNQCC Trigger: GCAGCACTGGTTGAAGAGTCACGTGATTTCATGCTG...AAACAGCCGTAAGTTTAAAACTGCTGTTTCGCTCATGACATCAGTAATGAGGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR-3UTR CCA 90 bp | GGGTGGACGGAAGTAATCTCCTGGCCTCTGTGCTCACTTGTCTCTATAATCTATAAGCCAAACGAACTTTaGGGAAATAAAATGCTCCAG | + |
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Preference number: 2 (lower is better) Translates to: GWTEVISWPLCSLVSIIYKPNEL*GNKMLQ Trigger: CTGGAGCATTTTATTTCCCCAAAGTTCGTTTGGCTT...ATAGATTATAGAGACAAGTGAGCACAGAGGCCAGGAGATTACTTCCGTCCACCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR-3UTR GCA 90 bp | GGGTGGACGGAAGTAATCTCCTGGCCTCTGTGCTCACTTGTCTCTATAATCTATGGGAGATTAATCAAGTaGAGGGTAAATAAAGGACTT | + |
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Preference number: 2 (lower is better) Translates to: GWTEVISWPLCSLVSIIYGRLIK*RVNKGL Trigger: AAGTCCTTTATTTACCCTGCACTTGATTAATCTCCC...ATAGATTATAGAGACAAGTGAGCACAGAGGCCAGGAGATTACTTCCGTCCACCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR-3UTR CCA 90 bp | TTTTATCTAATGCCAGGTGAGAGGCTGGCATTACACAAAGACATTGAAATGTCCAGACTTTTCCTTAGATaGATGAAACCTGCTATTTGT | + |
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Preference number: 2 (lower is better) Translates to: FYLMPGERLALHKDIEMSRLFLR*MKPAIC Trigger: ACAAATAGCAGGTTTCATCCATCTAAGGAAAAGTCT...GGACATTTCAATGTCTTTGTGTAATGCCAGCCTCTCACCTGGCATTAGATAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR GCA 72 bp | AGGTCAAAGGAGGCTTTCCACACACATAATCCTCACTaGTCTGCTCCAGAGGGGCATCCCTCCAGGGAGGGC | + |
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Preference number: 3 (lower is better) Translates to: RSKEAFHTHNPH*SAPEGHPSREG Trigger: GCCCTCCCTGGAGGGATGCCCCTCTGGAGCAGAGCAGTGAGGATTATGTGTGTGGAAAGCCTCCTTTGACCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR TCA 72 bp | TTGGTGTCCTTGGAGCACTTCAGGGAAGGCCCTCTCTaGGCACAGACGAAAGGCCCAGCAAGCAGGGAAAAG | + |
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Preference number: 3 (lower is better) Translates to: LVSLEHFREGPL*AQTKGPASREK Trigger: CTTTTCCCTGCTTGCTGGGCCTTTCGTCTGTGCTCAGAGAGGGCCTTCCCTGAAGTGCTCCAAGGACACCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR-3UTR CAA 90 bp | CCTCTGCGGATGCCCCGAGACCTTTGGAAAGCCATTCTGAAACTCCCTGGACCTCTGCTGTTCATCACTTaGTCACTTCCGGTGTCATAC | + |
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Preference number: 3 (lower is better) Translates to: PLRMPRDLWKAILKLPGPLLFIT*SLPVSY Trigger: GTATGACACCGGAAGTGACAAAGTGATGAACAGCAG...AGGTCCAGGGAGTTTCAGAATGGCTTTCCAAAGGTCTCGGGGCATCCGCAGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR-3UTR CAA 90 bp | CCTCTGCGGATGCCCCGAGACCTTTGGAAAGCCATTCTGAAACTCCCTGGACCTACCTCCTCATTTCATTaGGTGTCCTTGGAGCACTTC | + |
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Preference number: 3 (lower is better) Translates to: PLRMPRDLWKAILKLPGPTSSFH*VSLEHF Trigger: GAAGTGCTCCAAGGACACCAAATGAAATGAGGAGGT...AGGTCCAGGGAGTTTCAGAATGGCTTTCCAAAGGTCTCGGGGCATCCGCAGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR TCA 72 bp | CTGCAACTGGGGCTCAGCTACTACTGGACTTATCTTTaGGTCCAGGCACCATCAGGACCAGGTTGGTTTGTG | + |
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Preference number: 3 (lower is better) Translates to: LQLGLSYYWTYL*VQAPSGPGWFV Trigger: CACAAACCAACCTGGTCCTGATGGTGCCTGGACTCAAAGATAAGTCCAGTAGTAGCTGAGCCCCAGTTGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR CCA 72 bp | GCCGGCCCCATGGCTCTCCCGGGTTGGTTTCCACAGTaGCTAACTCTTCACTCATCAGTCTTAACATGTATT | + |
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Preference number: 3 (lower is better) Translates to: AGPMALPGWFPQ*LTLHSSVLTCI Trigger: AATACATGTTAAGACTGATGAGTGAAGAGTTAGCCACTGTGGAAACCAACCCGGGAGAGCCATGGGGCCGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR-3UTR CAA 90 bp | CCTCTGCGGATGCCCCGAGACCTTTGGAAAGCCATTCTGAAACTCCCTGGACCTAGAGGGCAACAAGCATaGTTCTTTCATCTGAGATCC | + |
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Preference number: 3 (lower is better) Translates to: PLRMPRDLWKAILKLPGPRGQQA*FFHLRS Trigger: GGATCTCAGATGAAAGAACAATGCTTGTTGCCCTCT...AGGTCCAGGGAGTTTCAGAATGGCTTTCCAAAGGTCTCGGGGCATCCGCAGAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR GCA 72 bp | ATCCACAGTGTGCTACTGATTTACTGGGTGCTACTCTaGCCCAGCTTAAGGATGAGGAAATGCTCTGTGGGA | + |
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Preference number: 3 (lower is better) Translates to: IHSVLLIYWVLL*PSLRMRKCSVG Trigger: TCCCACAGAGCATTTCCTCATCCTTAAGCTGGGGCAGAGTAGCACCCAGTAAATCAGTAGCACACTGTGGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR CCA 72 bp | AAGGCCCAGCAAGCAGGGAAAAGAGCATTCTGTGTATaGCACAAAAGTCCTGCATTTAGGGACAGAGGTCCT | + |
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Preference number: 3 (lower is better) Translates to: KAQQAGKRAFCV*HKSPAFRDRGP Trigger: AGGACCTCTGTCCCTAAATGCAGGACTTTTGTGCCATACACAGAATGCTCTTTTCCCTGCTTGCTGGGCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR CCA 72 bp | GATGACTGCAAGATCCACAGTGTGCTACTGATTTACTaGGTGCTACTCTGCCCCAGCTTAAGGATGAGGAAA | + |
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Preference number: 3 (lower is better) Translates to: DDCKIHSVLLIY*VLLCPSLRMRK Trigger: TTTCCTCATCCTTAAGCTGGGGCAGAGTAGCACCCAGTAAATCAGTAGCACACTGTGGATCTTGCAGTCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR GCA 72 bp | GAGCAATATTGCTCAAGTCTCCTTTCAGCTCTCAGCTaGTGTTCATCACTTTGTCACTTCCGGTGTCATACC | + |
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Preference number: 3 (lower is better) Translates to: EQYCSSLLSALS*CSSLCHFRCHT Trigger: GGTATGACACCGGAAGTGACAAAGTGATGAACAGCAGCTGAGAGCTGAAAGGAGACTTGAGCAATATTGCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR CCA 72 bp | TTCAGTGTAATTACAGCTCAACCTCCTCATTTCATTTaGTGTCCTTGGAGCACTTCAGGGAAGGCCCTCTCT | + |
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Preference number: 3 (lower is better) Translates to: FSVITAQPPHFI*CPWSTSGKALS Trigger: AGAGAGGGCCTTCCCTGAAGTGCTCCAAGGACACCAAATGAAATGAGGAGGTTGAGCTGTAATTACACTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR TCA 72 bp | GTTTCTAGTCCCATACATACCGTGACTATTTGGGCCTaGTGTAATAACAACTCTCCTTCTTTCTCCTTCTCC | + |
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Preference number: 3 (lower is better) Translates to: VSSPIHTVTIWA*CNNNSPSFSFS Trigger: GGAGAAGGAGAAAGAAGGAGAGTTGTTATTACATCAGGCCCAAATAGTCACGGTATGTATGGGACTAGAAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR GCA 72 bp | ATAATCTATACTGTTTCTGTGGGGAGATTAATCAAGTaGAGGGTAAATAAAGGACTTAGAGGGAAACCCGGT | + |
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Preference number: 3 (lower is better) Translates to: IIYTVSVGRLIK*RVNKGLRGKPG Trigger: ACCGGGTTTCCCTCTAAGTCCTTTATTTACCCTGCACTTGATTAATCTCCCCACAGAAACAGTATAGATTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR CCA 72 bp | GGAGTAACCAAGCAGAGTCTGTATAAAACTTGGATGTaGTTGCTAAGCATTTCCATTACAGTCCAAAGAAGA | + |
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Preference number: 3 (lower is better) Translates to: GVTKQSLYKTWM*LLSISITVQRR Trigger: TCTTCTTTGGACTGTAATGGAAATGCTTAGCAACCACATCCAAGTTTTATACAGACTCTGCTTGGTTACTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR CAA 72 bp | CCCTCCAGGGAGGGCCGGCCCCATGGCTCTCCCGGGTaGGTTTCCACAGTGGCTAACTCTTCACTCATCAGT | + |
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Preference number: 4 (lower is better) Translates to: PSREGRPHGSPG*VSTVANSSLIS Trigger: ACTGATGAGTGAAGAGTTAGCCACTGTGGAAACCAACCCGGGAGAGCCATGGGGCCGGCCCTCCCTGGAGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| CDS-3UTR CCA 90 bp | CCCAGCAAGCAGGGAAAAGAGCATTCTGTGTATGGCACAAAAGTCCTGCATTTAGGGAGCCCCGTGGCTTaGGCCAGGGGAAGGAACTCG | + |
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Preference number: 4 (lower is better) Translates to: PSKQGKEHSVYGTKVLHLGSPVA*ARGRNS Trigger: CGAGTTCCTTCCCCTGGCCCAAGCCACGGGGCTCCC...TAAATGCAGGACTTTTGTGCCATACACAGAATGCTCTTTTCCCTGCTTGCTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| CDS-3UTR GCA 90 bp | AAAGGCCCAGCAAGCAGGGAAAAGAGCATTCTGTGTATGGCACAAAAGTCCTGCGCATTGTTGACACTCTaGTGCCTCCACCGCTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: KGPASREKSILCMAQKSCALLTL*CLHRSL Trigger: CAGGGAGCGGTGGAGGCAGCAGAGTGTCAACAATGC...GCAGGACTTTTGTGCCATACACAGAATGCTCTTTTCCCTGCTTGCTGGGCCTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| CDS-3UTR CCA 90 bp | GGGTGGACGGAAGTAATCTCCTGGCCTCTGTGCTCACTTGTCTCTATAATCTATTGGCAGGCGGGTCTTTaGGGGAAAGAGCCCCAGAAT | + |
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Preference number: 4 (lower is better) Translates to: GWTEVISWPLCSLVSIIYWQAGL*GKEPQN Trigger: ATTCTGGGGCTCTTTCCCCCAAAGACCCGCCTGCCA...ATAGATTATAGAGACAAGTGAGCACAGAGGCCAGGAGATTACTTCCGTCCACCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| CDS-3UTR GCA 90 bp | CCCAGCAAGCAGGGAAAAGAGCATTCTGTGTATGGCACAAAAGTCCTGCATTTATTGTTGACACTCTGCTaGCTCCACCGCTCCCTGGTA | + |
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Preference number: 4 (lower is better) Translates to: PSKQGKEHSVYGTKVLHLLLTLC*LHRSLV Trigger: TACCAGGGAGCGGTGGAGGCAGCAGAGTGTCAACAA...TAAATGCAGGACTTTTGTGCCATACACAGAATGCTCTTTTCCCTGCTTGCTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR CAA 72 bp | GACTTATCTTTGAGTCCAGGCACCATCAGGACCAGGTaGGTTTGTGGTGATGACTGCAAGATCCACAGTGTG | + |
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Preference number: 4 (lower is better) Translates to: DLSLSPGTIRTR*VCGDDCKIHSV Trigger: CACACTGTGGATCTTGCAGTCATCACCACAAACCAACCTGGTCCTGATGGTGCCTGGACTCAAAGATAAGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| CDS-3UTR TCA 90 bp | AAAGGCCCAGCAAGCAGGGAAAAGAGCATTCTGTGTATGGCACAAAAGTCCTGCTTCTTGTCTGGAGGGTaGGTAGGGATAAGTTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: KGPASREKSILCMAQKSCFLSGG*VGISFL Trigger: GAGGAAACTTATCCCTACTCACCCTCCAGACAAGAA...GCAGGACTTTTGTGCCATACACAGAATGCTCTTTTCCCTGCTTGCTGGGCCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| CDS-3UTR TCA 90 bp | CAGTCTAAGGAAGTCCTCATTACTGATGTCATGAGCGAAACAGCAGTTTTAAACGCAGCGACTCCTGTTTaGTGCAGGCTTTGCTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: QSKEVLITDVMSETAVLNAATPV*CRLCSP Trigger: GGGAGAGCAAAGCCTGCATCAAACAGGAGTCGCTGC...GTTTAAAACTGCTGTTTCGCTCATGACATCAGTAATGAGGACTTCCTTAGACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR CAA 72 bp | ATTCAGTGTAATTACAGCTCAACCTCCTCATTTCATTaGGTGTCCTTGGAGCACTTCAGGGAAGGCCCTCTC | + |
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Preference number: 4 (lower is better) Translates to: IQCNYSSTSSFH*VSLEHFREGPL Trigger: GAGAGGGCCTTCCCTGAAGTGCTCCAAGGACACCAAATGAAATGAGGAGGTTGAGCTGTAATTACACTGAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| CDS-3UTR GCA 90 bp | GTGCTCACTTGTCTCTATAATCTATACTGTTTCTGTGGGGAGATTAATCAAGTGGAAGCGTCTCGTTCTTaGTCAGCTTCTTGTCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: VLTCLYNLYCFCGEINQVEASRS*SASCLE Trigger: CTCCAGACAAGAAGCTGAGCAAGAACGAGACGCTTC...CACTTGATTAATCTCCCCACAGAAACAGTATAGATTATAGAGACAAGTGAGCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| CDS-3UTR GCA 90 bp | CAGTCTAAGGAAGTCCTCATTACTGATGTCATGAGCGAAACAGCAGTTTTAAACGTTGATATACCTCATTaGCAAGCGAAGCGTCTCGTT | + |
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Preference number: 4 (lower is better) Translates to: QSKEVLITDVMSETAVLNVDIPH*QAKRLV Trigger: AACGAGACGCTTCGCTTGGCAATGAGGTATATCAAC...GTTTAAAACTGCTGTTTCGCTCATGACATCAGTAATGAGGACTTCCTTAGACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR CAA 72 bp | GTAACCAAGCAGAGTCTGTATAAAACTTGGATGTGGTaGCTAAGCATTTCCATTACAGTCCAAAGAAGACCA | + |
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Preference number: 4 (lower is better) Translates to: VTKQSLYKTWMW*LSISITVQRRP Trigger: TGGTCTTCTTTGGACTGTAATGGAAATGCTTAGCAACCACATCCAAGTTTTATACAGACTCTGCTTGGTTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR CAA 72 bp | AATAAACGTTTTAATATATTCAGAGGGCAACAAGCATaGTTCTTTCATCTGAGATCCAGTCTAAGGAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: NKRFNIFRGQQA*FFHLRSSLRKS Trigger: GGACTTCCTTAGACTGGATCTCAGATGAAAGAACAATGCTTGTTGCCCTCTGAATATATTAAAACGTTTATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| 3UTR CAA 72 bp | AGTGCATCGGCTGAATTGACCTTAATGACAGTCACCTaGTTACATATAAAGAAAATACTTTCTAGAGAGACA | + |
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Preference number: 4 (lower is better) Translates to: SASAELTLMTVT*LHIKKILSRET Trigger: TGTCTCTCTAGAAAGTATTTTCTTTATATGTAACAAGGTGACTGTCATTAAGGTCAATTCAGCCGATGCACT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| CDS-3UTR CAA 90 bp | GGGCATCCCTCCAGGGAGGGCCGGCCCCATGGCTCTCCCGGGTTGGTTTCCACAAGCAGCGACTCCTGTTaGATGCAGGCTTTGCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: GHPSREGRPHGSPGLVSTSSDSC*MQALLS Trigger: GGAGAGCAAAGCCTGCATCAAACAGGAGTCGCTGCT...TGTGGAAACCAACCCGGGAGAGCCATGGGGCCGGCCCTCCCTGGAGGGATGCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| CDS-3UTR CAA 90 bp | GGCATCCCTCCAGGGAGGGCCGGCCCCATGGCTCTCCCGGGTTGGTTTCCACAGTTGGCAAAGGCATTGTaGACACTCTGCTGCCTCCAC | + |
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Preference number: 5 (lower is better) Translates to: GIPPGRAGPMALPGWFPQLAKAL*TLCCLH Trigger: GTGGAGGCAGCAGAGTGTCAACAATGCCTTTGCCAA...CTGTGGAAACCAACCCGGGAGAGCCATGGGGCCGGCCCTCCCTGGAGGGATGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| CDS-3UTR CAA 90 bp | CCTCTGCGGATGCCCCGAGACCTTTGGAAAGCCATTCTGAAACTCCCTGGACCTAGGGAGCCCCGTGGCTaGGGCCAGGGGAAGGAACTC | + |
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Preference number: 5 (lower is better) Translates to: PLRMPRDLWKAILKLPGPREPRG*GQGKEL Trigger: GAGTTCCTTCCCCTGGCCCAAGCCACGGGGCTCCCT...AGGTCCAGGGAGTTTCAGAATGGCTTTCCAAAGGTCTCGGGGCATCCGCAGAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| CDS-3UTR CAA 90 bp | GGCATCCCTCCAGGGAGGGCCGGCCCCATGGCTCTCCCGGGTTGGTTTCCACAGACCTTGACCAAGAAGTaGATATACCTCATTGCCAAG | + |
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Preference number: 5 (lower is better) Translates to: GIPPGRAGPMALPGWFPQTLTKK*IYLIAK Trigger: CTTGGCAATGAGGTATATCAACTTCTTGGTCAAGGT...CTGTGGAAACCAACCCGGGAGAGCCATGGGGCCGGCCCTCCCTGGAGGGATGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| CDS GCA 90 bp | GTAGGGATAAGTTTCCTCAGCTTGGCAAAGGCATTGTTGACACTCTaGTGCCTCCACCGCTCCCTGGTATTTGTGAAGATCTTTCTGGTC | + |
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Preference number: 5 (lower is better) Translates to: VGISFLSLAKALLTL*CLHRSLVFVKIFLV Trigger: GACCAGAAAGATCTTCACAAATACCAGGGAGCGGTGGAGGCAGCAGAGTGTCAACAATGCCTTTGCCAAGCTGAGGAAACTTATCCCTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| CDS-3UTR CAA 90 bp | CAGTCTAAGGAAGTCCTCATTACTGATGTCATGAGCGAAACAGCAGTTTTAAACAGCTTGGCAAAGGCATaGTTGACACTCTGCTGCCTC | + |
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Preference number: 5 (lower is better) Translates to: QSKEVLITDVMSETAVLNSLAKA*LTLCCL Trigger: GAGGCAGCAGAGTGTCAACAATGCCTTTGCCAAGCT...GTTTAAAACTGCTGTTTCGCTCATGACATCAGTAATGAGGACTTCCTTAGACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| CDS-3UTR CAA 90 bp | CCCAGCAAGCAGGGAAAAGAGCATTCTGTGTATGGCACAAAAGTCCTGCATTTATGCTCTCCCAAGACCTaGACCAAGAAGTTGATATAC | + |
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Preference number: 5 (lower is better) Translates to: PSKQGKEHSVYGTKVLHLCSPKT*TKKLIY Trigger: GTATATCAACTTCTTGGTCAAGGTCTTGGGAGAGCA...TAAATGCAGGACTTTTGTGCCATACACAGAATGCTCTTTTCCCTGCTTGCTGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| CDS-3UTR CAA 90 bp | GTGCTCACTTGTCTCTATAATCTATACTGTTTCTGTGGGGAGATTAATCAAGTGATAAGTTTCCTCAGCTaGGCAAAGGCATTGTTGACA | + |
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Preference number: 5 (lower is better) Translates to: VLTCLYNLYCFCGEINQVISFLS*AKALLT Trigger: TGTCAACAATGCCTTTGCCAAGCTGAGGAAACTTAT...CACTTGATTAATCTCCCCACAGAAACAGTATAGATTATAGAGACAAGTGAGCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| CDS CAA 72 bp | GTAGAGTTCTGTCATCCTCATCTGGCAGGCGGGTCTTaGGGGGAAAGAGCCCCAGAATGTTTCCCTGAGCAG | + |
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Preference number: 6 (lower is better) Translates to: VEFCHPHLAGGS*GERAPECFPEQ Trigger: CTGCTCAGGGAAACATTCTGGGGCTCTTTCCCCCAAAGACCCGCCTGCCAGATGAGGATGACAGAACTCTAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| CDS CAA 90 bp | AGTCATTCAGTAGAGTTCTGTCATCCTCATCTGGCAGGCGGGTCTTaGGGGGAAAGAGCCCCAGAATGTTTCCCTGAGCAGCGACTCCTG | + |
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Preference number: 6 (lower is better) Translates to: SHSVEFCHPHLAGGS*GERAPECFPEQRLL Trigger: CAGGAGTCGCTGCTCAGGGAAACATTCTGGGGCTCTTTCCCCCAAAGACCCGCCTGCCAGATGAGGATGACAGAACTCTACTGAATGACT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| CDS CAA 90 bp | TGGGGGAAAGAGCCCCAGAATGTTTCCCTGAGCAGCGACTCCTGTTaGATGCAGGCTTTGCTCTCCCAAGACCTTGACCAAGAAGTTGAT | + |
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Preference number: 6 (lower is better) Translates to: WGKEPQNVSLSSDSC*MQALLSQDLDQEVD Trigger: ATCAACTTCTTGGTCAAGGTCTTGGGAGAGCAAAGCCTGCATCAAACAGGAGTCGCTGCTCAGGGAAACATTCTGGGGCTCTTTCCCCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| CDS GCA 72 bp | AGTTTCCTCAGCTTGGCAAAGGCATTGTTGACACTCTaGTGCCTCCACCGCTCCCTGGTATTTGTGAAGATC | + |
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Preference number: 6 (lower is better) Translates to: SFLSLAKALLTL*CLHRSLVFVKI Trigger: GATCTTCACAAATACCAGGGAGCGGTGGAGGCAGCAGAGTGTCAACAATGCCTTTGCCAAGCTGAGGAAACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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| CDS CAA 72 bp | TGCAGGCTTTGCTCTCCCAAGACCTTGACCAAGAAGTaGATATACCTCATTGCCAAGCGAAGCGTCTCGTTC | + |
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Preference number: 6 (lower is better) Translates to: CRLCSPKTLTKK*IYLIAKRSVSF Trigger: GAACGAGACGCTTCGCTTGGCAATGAGGTATATCAACTTCTTGGTCAAGGTCTTGGGAGAGCAAAGCCTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030124.4 |
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