Pregenerated sensors for TAGLN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022658Ensembl transcript IDs: ENSMUST00000096057.5
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACTTGCAAGGACAGGGGACAGAAGGCTTCAAGAAAGAGGAGAAGGTaGGCAGGTGACTACCTATTTCTTTGTCACGGGCTGTGGTGCGGA | + |
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Preference number: 1 (lower is better) Translates to: TCKDRGQKASRKRRR*AGDYLFLCHGLWCG Trigger: TCCGCACCACAGCCCGTGACAAAGAAATAGGTAGTCACCTGCTCACCTTCTCCTCTTTCTTGAAGCCTTCTGTCCCCTGTCCTTGCAAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| 3UTR GCA 90 bp | ACCAAGACCTTAGGGCACAGGAGGTCAGAGAGGAAAGGGAGTCTTTaGATAGTTCTAAAGGAACAGAAGGTGGCAGCAGTAGGCAGCAGT | + |
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Preference number: 1 (lower is better) Translates to: TKTLGHRRSERKGSL*IVLKEQKVAAVGSS Trigger: ACTGCTGCCTACTGCTGCCACCTTCTGTTCCTTTAGAACTATGCAAAGACTCCCTTTCCTCTCTGACCTCCTGTGCCCTAAGGTCTTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| 3UTR CAA 90 bp | AACCAAGACCTTAGGGCACAGGAGGTCAGAGAGGAAAGGGAGTCTTaGCATAGTTCTAAAGGAACAGAAGGTGGCAGCAGTAGGCAGCAG | + |
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Preference number: 2 (lower is better) Translates to: NQDLRAQEVREERES*HSSKGTEGGSSRQQ Trigger: CTGCTGCCTACTGCTGCCACCTTCTGTTCCTTTAGAACTATGCAAAGACTCCCTTTCCTCTCTGACCTCCTGTGCCCTAAGGTCTTGGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| 3UTR-3UTR TCA 90 bp | AAAGGGAGTCTTTGCATAGTTCTAAAGGAACAGAAGGTGGCAGCAGTAGGCAGCAGGCAGCGTGGAGTCTaGGCAGAAATGCAGCACTTG | + |
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Preference number: 2 (lower is better) Translates to: KGSLCIVLKEQKVAAVGSRQRGV*AEMQHL Trigger: CAAGTGCTGCATTTCTGCTCAGACTCCACGCTGCCT...GCTGCCTACTGCTGCCACCTTCTGTTCCTTTAGAACTATGCAAAGACTCCCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| 3UTR TCA 72 bp | GTGGCAGCAGTAGGCAGCAGTAGGCAGCGTGGAGTCTaGGCAGAAATGCAGCACTTGCAAGGACAGGGGACA | + |
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Preference number: 3 (lower is better) Translates to: VAAVGSSRQRGV*AEMQHLQGQGT Trigger: TGTCCCCTGTCCTTGCAAGTGCTGCATTTCTGCTCAGACTCCACGCTGCCTACTGCTGCCTACTGCTGCCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| 3UTR GCA 72 bp | GCAGGTGACTACCTATTTCTTTGTCACGGGCTGTGGTaGGGAACATCCGTCCTCTCTACCAGGGGGCACTCA | + |
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Preference number: 3 (lower is better) Translates to: AGDYLFLCHGLW*GTSVLSTRGHS Trigger: TGAGTGCCCCCTGGTAGAGAGGACGGATGTTCCGCACCACAGCCCGTGACAAAGAAATAGGTAGTCACCTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| 3UTR GCA 72 bp | GTAGGCAGCGTGGAGTCTGAGCAGAAATGCAGCACTTaGAAGGACAGGGGACAGAAGGCTTCAAGAAAGAGG | + |
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Preference number: 3 (lower is better) Translates to: VGSVESEQKCST*KDRGQKASRKR Trigger: CCTCTTTCTTGAAGCCTTCTGTCCCCTGTCCTTGCAAGTGCTGCATTTCTGCTCAGACTCCACGCTGCCTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS-3UTR GCA 90 bp | GAGTCTGAGCAGAAATGCAGCACTTGCAAGGACAGGGGACAGAAGGCTTCAAGATCCCGTACCCCGTCATaGCCGCCTGGGAGGCACCCT | + |
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Preference number: 4 (lower is better) Translates to: ESEQKCSTCKDRGQKASRSRTPS*PPGRHP Trigger: AGGGTGCCTCCCAGGCGGGCATGACGGGGTACGGGA...TCTTGAAGCCTTCTGTCCCCTGTCCTTGCAAGTGCTGCATTTCTGCTCAGACTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS-3UTR TCA 90 bp | TCTTTGTCACGGGCTGTGGTGCGGAACATCCGTCCTCTCTACCAGGGGGCACTCGCGAAGTTGCTCCTCTaGAAATCCTCTCCGATTCTG | + |
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Preference number: 4 (lower is better) Translates to: SLSRAVVRNIRPLYQGALAKLLL*KSSPIL Trigger: CAGAATCGGAGAGGATTTTCAGAGGAGCAACTTCGC...GAGTGCCCCCTGGTAGAGAGGACGGATGTTCCGCACCACAGCCCGTGACAAAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS-3UTR GCA 90 bp | GCAGAAATGCAGCACTTGCAAGGACAGGGGACAGAAGGCTTCAAGAAAGAGGAGTCTGAAAATGGGCCCTaGCCGGGGGCGGGTGCTCTA | + |
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Preference number: 4 (lower is better) Translates to: AEMQHLQGQGTEGFKKEESENGP*PGAGAL Trigger: TAGAGCACCCGCCCCCGGGCAGGGCCCATTTTCAGA...CTCCTCTTTCTTGAAGCCTTCTGTCCCCTGTCCTTGCAAGTGCTGCATTTCTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS-3UTR CCA 90 bp | GAGTCTGAGCAGAAATGCAGCACTTGCAAGGACAGGGGACAGAAGGCTTCAAGACCTGTGAAACCAGGATaGCTCTCCCCGGTAGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: ESEQKCSTCKDRGQKASRPVKPG*LSPVAA Trigger: GGCTGCTACCGGGGAGAGCCATCCTGGTTTCACAGG...TCTTGAAGCCTTCTGTCCCCTGTCCTTGCAAGTGCTGCATTTCTGCTCAGACTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS-3UTR TCA 90 bp | GCAGAAATGCAGCACTTGCAAGGACAGGGGACAGAAGGCTTCAAGAAAGAGGAGCAGCACACTGCAGGATaGTCCAGTCCACCAGCTTGT | + |
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Preference number: 4 (lower is better) Translates to: AEMQHLQGQGTEGFKKEEQHTAG*SSPPAC Trigger: ACAAGCTGGTGGACTGGATCATCCTGCAGTGTGCTG...CTCCTCTTTCTTGAAGCCTTCTGTCCCCTGTCCTTGCAAGTGCTGCATTTCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS-3UTR GCA 90 bp | ACCTATTTCTTTGTCACGGGCTGTGGTGCGGAACATCCGTCCTCTCTACCAGGGAACTGTTTATCAGCTTaGACAGGACCGTCCCGTCCA | + |
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Preference number: 4 (lower is better) Translates to: TYFFVTGCGAEHPSSLPGNCLSA*TGPSRP Trigger: TGGACGGGACGGTCCTGTGCAAGCTGATAAACAGTT...CCCTGGTAGAGAGGACGGATGTTCCGCACCACAGCCCGTGACAAAGAAATAGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS-3UTR TCA 90 bp | CTTCAAGAAAGAGGAGAAGGTGAGCAGGTGACTACCTATTTCTTTGTCACGGGCTGCTGGGCTTTCCTGTaGAACCAGGATGGCTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: LQERGEGEQVTTYFFVTGCWAFL*NQDGSP Trigger: GGGAGAGCCATCCTGGTTTCACAGGAAAGCCCAGCA...GCCCGTGACAAAGAAATAGGTAGTCACCTGCTCACCTTCTCCTCTTTCTTGAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS-3UTR CCA 90 bp | GGGCACAGGAGGTCAGAGAGGAAAGGGAGTCTTTGCATAGTTCTAAAGGAACAGCTGAGATCTTGGGGATaGGTTCTTGCCCTGGTGGAT | + |
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Preference number: 4 (lower is better) Translates to: GHRRSERKGSLCIVLKEQLRSWG*VLALVD Trigger: ATCCACCAGGGCAAGAACCCATCCCCAAGATCTCAG...CTGTTCCTTTAGAACTATGCAAAGACTCCCTTTCCTCTCTGACCTCCTGTGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS-3UTR CCA 90 bp | GCAGAAATGCAGCACTTGCAAGGACAGGGGACAGAAGGCTTCAAGAAAGAGGAGTTGACTCTGAGATCTTaGGGATGGGTTCTTGCCCTG | + |
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Preference number: 4 (lower is better) Translates to: AEMQHLQGQGTEGFKKEELTLRS*GWVLAL Trigger: CAGGGCAAGAACCCATCCCCAAGATCTCAGAGTCAA...CTCCTCTTTCTTGAAGCCTTCTGTCCCCTGTCCTTGCAAGTGCTGCATTTCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS-3UTR TCA 90 bp | AAAGGGAGTCTTTGCATAGTTCTAAAGGAACAGAAGGTGGCAGCAGTAGGCAGCAAATGTCAGTGGTCCTaGCACCATAGACCTCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: KGSLCIVLKEQKVAAVGSKCQWS*HHRPRQ Trigger: CTGCCGAGGTCTATGGTGTCAGGACCACTGACATTT...GCTGCCTACTGCTGCCACCTTCTGTTCCTTTAGAACTATGCAAAGACTCCCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS-3UTR GCA 90 bp | AAATGCAGCACTTGCAAGGACAGGGGACAGAAGGCTTCAAGAAAGAGGAGAAGGATATCCTCAGCACACTaGAGGATGATCCAGTCCACC | + |
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Preference number: 4 (lower is better) Translates to: KCSTCKDRGQKASRKRRRISSAH*RMIQST Trigger: GGTGGACTGGATCATCCTGCAGTGTGCTGAGGATAT...CCTTCTCCTCTTTCTTGAAGCCTTCTGTCCCCTGTCCTTGCAAGTGCTGCATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS-3UTR GCA 90 bp | AAAGGGAGTCTTTGCATAGTTCTAAAGGAACAGAAGGTGGCAGCAGTAGGCAGCTCCGCGTCATACTTCTaGTCAATCTTCTCCTGCACC | + |
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Preference number: 4 (lower is better) Translates to: KGSLCIVLKEQKVAAVGSSASYF*SIFSCT Trigger: GGTGCAGGAGAAGATTGAGCAGAAGTATGACGCGGA...GCTGCCTACTGCTGCCACCTTCTGTTCCTTTAGAACTATGCAAAGACTCCCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS-3UTR GCA 90 bp | GAAATGCAGCACTTGCAAGGACAGGGGACAGAAGGCTTCAAGAAAGAGGAGAAGATCATCCTTGGTAACTaGAACACTGCCCAAGGCCAT | + |
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Preference number: 4 (lower is better) Translates to: EMQHLQGQGTEGFKKEEKIILGN*NTAQGH Trigger: ATGGCCTTGGGCAGTGTTGCAGTTACCAAGGATGAT...CTTCTCCTCTTTCTTGAAGCCTTCTGTCCCCTGTCCTTGCAAGTGCTGCATTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS-3UTR GCA 90 bp | CTTCAAGAAAGAGGAGAAGGTGAGCAGGTGACTACCTATTTCTTTGTCACGGGCTGTCCCTGGCGAAGTTaGTCCTCTGAAAATCCTCTC | + |
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Preference number: 4 (lower is better) Translates to: LQERGEGEQVTTYFFVTGCPWRS*SSENPL Trigger: GAGAGGATTTTCAGAGGAGCAACTTCGCCAGGGACA...GCCCGTGACAAAGAAATAGGTAGTCACCTGCTCACCTTCTCCTCTTTCTTGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS-3UTR GCA 90 bp | CAAGAAAGAGGAGAAGGTGAGCAGGTGACTACCTATTTCTTTGTCACGGGCTGTGAGATTTGCTCCATCTaGTTAAAAGCCATCTTTGAC | + |
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Preference number: 4 (lower is better) Translates to: QERGEGEQVTTYFFVTGCEICSI*LKAIFD Trigger: GTCAAAGATGGCTTTTAAGCAGATGGAGCAAATCTC...ACAGCCCGTGACAAAGAAATAGGTAGTCACCTGCTCACCTTCTCCTCTTTCTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS-3UTR CAA 90 bp | GCTGTGGTGCGGAACATCCGTCCTCTCTACCAGGGGGCACTCACTATACAGCATATCCAGTCCACCAGCTaGTTCTCCAGATCCGCGTCA | + |
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Preference number: 5 (lower is better) Translates to: AVVRNIRPLYQGALTIQHIQSTS*FSRSAS Trigger: TGACGCGGATCTGGAGAACAAGCTGGTGGACTGGAT...ATGCTGTATAGTGAGTGCCCCCTGGTAGAGAGGACGGATGTTCCGCACCACAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS-3UTR CAA 90 bp | TTCTTTGTCACGGGCTGTGGTGCGGAACATCCGTCCTCTCTACCAGGGGGCACTTTTGACTCTGAGATCTaGGGGATGGGTTCTTGCCCT | + |
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Preference number: 5 (lower is better) Translates to: FFVTGCGAEHPSSLPGGTFDSEI*GMGSCP Trigger: AGGGCAAGAACCCATCCCCAAGATCTCAGAGTCAAA...AGTGCCCCCTGGTAGAGAGGACGGATGTTCCGCACCACAGCCCGTGACAAAGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS GCA 90 bp | TGCTTAAAAGCCATCTTTGACTCTGAGATCTTGGGGATGGGTTCTTaGCCTGGTGGATATAAACTGTTTATCAGCTTGCACAGGACCGTC | + |
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Preference number: 5 (lower is better) Translates to: CLKAIFDSEILGMGS*PGGYKLFISLHRTV Trigger: GACGGTCCTGTGCAAGCTGATAAACAGTTTATATCCACCAGGGCAAGAACCCATCCCCAAGATCTCAGAGTCAAAGATGGCTTTTAAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS GCA 72 bp | CCGTCCCGTCCATCAACCATTTCTGAAAATGGGCCCTaGCCGGGGGCGGGTGCTCTATATCCTCAGCACACT | + |
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Preference number: 6 (lower is better) Translates to: PSRPSTISENGP*PGAGALYPQHT Trigger: AGTGTGCTGAGGATATAGAGCACCCGCCCCCGGGCAGGGCCCATTTTCAGAAATGGTTGATGGACGGGACGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS TCA 72 bp | GGGGCGGGTGCTCTATATCCTCAGCACACTGCAGGATaGTCCAGTCCACCAGCTTGTTCTCCAGATCCGCGT | + |
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Preference number: 6 (lower is better) Translates to: GAGALYPQHTAG*SSPPACSPDPR Trigger: ACGCGGATCTGGAGAACAAGCTGGTGGACTGGATCATCCTGCAGTGTGCTGAGGATATAGAGCACCCGCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS TCA 72 bp | GCCTATGACATTCTGTCCCTGGCGAAGTTGCTCCTCTaGAAATCCTCTCCGATTCTGCTGGGCTTTCCTGTG | + |
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Preference number: 6 (lower is better) Translates to: AYDILSLAKLLL*KSSPILLGFPV Trigger: CACAGGAAAGCCCAGCAGAATCGGAGAGGATTTTCAGAGGAGCAACTTCGCCAGGGACAGAATGTCATAGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS GCA 72 bp | ATCTGCAGGCCTATGACATTCTGTCCCTGGCGAAGTTaGTCCTCTGAAAATCCTCTCCGATTCTGCTGGGCT | + |
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Preference number: 6 (lower is better) Translates to: ICRPMTFCPWRS*SSENPLRFCWA Trigger: AGCCCAGCAGAATCGGAGAGGATTTTCAGAGGAGCAACTTCGCCAGGGACAGAATGTCATAGGCCTGCAGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS GCA 72 bp | GCCATCTTTGACTCTGAGATCTTGGGGATGGGTTCTTaGCCTGGTGGATATAAACTGTTTATCAGCTTGCAC | + |
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Preference number: 6 (lower is better) Translates to: AIFDSEILGMGS*PGGYKLFISLH Trigger: GTGCAAGCTGATAAACAGTTTATATCCACCAGGGCAAGAACCCATCCCCAAGATCTCAGAGTCAAAGATGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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| CDS CAA 72 bp | TCCATCTGCTTAAAAGCCATCTTTGACTCTGAGATCTaGGGGATGGGTTCTTGCCCTGGTGGATATAAACTG | + |
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Preference number: 6 (lower is better) Translates to: SICLKAIFDSEI*GMGSCPGGYKL Trigger: CAGTTTATATCCACCAGGGCAAGAACCCATCCCCAAGATCTCAGAGTCAAAGATGGCTTTTAAGCAGATGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096057.5 |
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