Pregenerated sensors for TAFA4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046500Ensembl transcript IDs: ENSMUST00000089295.6
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTCCTTGGGAAAAGGAGAACAAGAAGATCCAGGTTCTCCCAGCGCTaGTCCATCCACATTAGCACCTCCGATGTCCTCTCCAGCATTTCT | + |
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Preference number: 1 (lower is better) Translates to: FLGKRRTRRSRFSQR*SIHISTSDVLSSIS Trigger: AGAAATGCTGGAGAGGACATCGGAGGTGCTAATGTGGATGGAGCAGCGCTGGGAGAACCTGGATCTTCTTGTTCTCCTTTTCCCAAGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR CCA 90 bp | AAAGAGGATCGGCCTGGGTCCTTTTGTACTTCTGTCCATGTTCCTTaGGAAAAGGAGAACAAGAAGATCCAGGTTCTCCCAGCGCTGCTC | + |
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Preference number: 1 (lower is better) Translates to: KEDRPGSFCTSVHVP*EKENKKIQVLPALL Trigger: GAGCAGCGCTGGGAGAACCTGGATCTTCTTGTTCTCCTTTTCCCAAGGAACATGGACAGAAGTACAAAAGGACCCAGGCCGATCCTCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR TCA 90 bp | TGCACATATTTTGGCTATGAACTTCTGAGCAAGTTCCAAGGTGAGTaGGTTCTCACTAGTCTGGTAATCCACACAGCACAGCTCTGCGTC | + |
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Preference number: 1 (lower is better) Translates to: CTYFGYELLSKFQGE*VLTSLVIHTAQLCV Trigger: GACGCAGAGCTGTGCTGTGTGGATTACCAGACTAGTGAGAACTCACTCACCTTGGAACTTGCTCAGAAGTTCATAGCCAAAATATGTGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR GCA 90 bp | AAAGCAGACAAACGGGAACAGCCACGTAAATGCCACCTTCCACACTaGACATATTTTGGCTATGAACTTCTGAGCAAGTTCCAAGGTGAG | + |
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Preference number: 1 (lower is better) Translates to: KADKREQPRKCHLPH*TYFGYELLSKFQGE Trigger: CTCACCTTGGAACTTGCTCAGAAGTTCATAGCCAAAATATGTGCAGTGTGGAAGGTGGCATTTACGTGGCTGTTCCCGTTTGTCTGCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR TCA 90 bp | TTCTGCATGGCAGTGTCTGTGAAATCACTGAAATTGGAGGCAAGATaGCTGAGGTTTTACTTAACATTTAAAGAAGTAAGAAACCGAACA | + |
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Preference number: 1 (lower is better) Translates to: FCMAVSVKSLKLEAR*LRFYLTFKEVRNRT Trigger: TGTTCGGTTTCTTACTTCTTTAAATGTTAAGTAAAACCTCAGTCATCTTGCCTCCAATTTCAGTGATTTCACAGACACTGCCATGCAGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR GCA 90 bp | GATAGCACTGTAGACAACATAATAGAACCTATGTTTCTTTGTAATTaGAAAAGGACAGACAGTTGGCGCAGCAAGTATACTGTCAACATT | + |
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Preference number: 1 (lower is better) Translates to: DSTVDNIIEPMFLCN*KRTDSWRSKYTVNI Trigger: AATGTTGACAGTATACTTGCTGCGCCAACTGTCTGTCCTTTTGCAATTACAAAGAAACATAGGTTCTATTATGTTGTCTACAGTGCTATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR-3UTR TCA 90 bp | TGTGCTAGGCAGGCTCCTTTTGAGATCCAGGTAACACCTCAGTTGAGTGGCCACCACATATTTTGGCTATaGACTTCTGAGCAAGTTCCA | + |
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Preference number: 2 (lower is better) Translates to: CARQAPFEIQVTPQLSGHHIFWL*TSEQVP Trigger: TGGAACTTGCTCAGAAGTTCATAGCCAAAATATGTG...GTGGCCACTCAACTGAGGTGTTACCTGGATCTCAAAAGGAGCCTGCCTAGCACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR-3UTR GCA 90 bp | CCTATGTTTCTTTGTAATTGCAAAAGGACAGACAGTTGGCGCAGCAAGTATACTGAACAGCCACGTAAATaGCACCTTCCACACTGCACA | + |
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Preference number: 2 (lower is better) Translates to: PMFLCNCKRTDSWRSKYTEQPRK*HLPHCT Trigger: TGTGCAGTGTGGAAGGTGGCATTTACGTGGCTGTTC...AGTATACTTGCTGCGCCAACTGTCTGTCCTTTTGCAATTACAAAGAAACATAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR-3UTR GCA 90 bp | CCTATGTTTCTTTGTAATTGCAAAAGGACAGACAGTTGGCGCAGCAAGTATACTTGCCACCTTCCACACTaGACATATTTTGGCTATGAA | + |
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Preference number: 2 (lower is better) Translates to: PMFLCNCKRTDSWRSKYTCHLPH*TYFGYE Trigger: TTCATAGCCAAAATATGTGCAGTGTGGAAGGTGGCA...AGTATACTTGCTGCGCCAACTGTCTGTCCTTTTGCAATTACAAAGAAACATAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR-3UTR CCA 90 bp | CCTATGTTTCTTTGTAATTGCAAAAGGACAGACAGTTGGCGCAGCAAGTATACTTCTGTCCATGTTCCTTaGGAAAAGGAGAACAAGAAG | + |
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Preference number: 2 (lower is better) Translates to: PMFLCNCKRTDSWRSKYTSVHVP*EKENKK Trigger: CTTCTTGTTCTCCTTTTCCCAAGGAACATGGACAGA...AGTATACTTGCTGCGCCAACTGTCTGTCCTTTTGCAATTACAAAGAAACATAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR-3UTR TCA 90 bp | GTTGGCGCAGCAAGTATACTGTCAACATTTCTTAATACATACAATCAATCCCACGTCCCAACAGGTACATaGTCTTTTGTGAATATGCCA | + |
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Preference number: 2 (lower is better) Translates to: VGAASILSTFLNTYNQSHVPTGT*SFVNMP Trigger: TGGCATATTCACAAAAGATCATGTACCTGTTGGGAC...GTGGGATTGATTGTATGTATTAAGAAATGTTGACAGTATACTTGCTGCGCCAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR-3UTR CCA 90 bp | TTTCTTTGTAATTGCAAAAGGACAGACAGTTGGCGCAGCAAGTATACTGTCAACACATCATTTCAAACCTaGGCCAGTGTCTCTTTGTTT | + |
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Preference number: 2 (lower is better) Translates to: FLCNCKRTDSWRSKYTVNTSFQT*ASVSLF Trigger: AAACAAAGAGACACTGGCCCAGGTTTGAAATGATGT...GTTGACAGTATACTTGCTGCGCCAACTGTCTGTCCTTTTGCAATTACAAAGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR-3UTR GCA 90 bp | ATGTTTCTTTGTAATTGCAAAAGGACAGACAGTTGGCGCAGCAAGTATACTGTCTGTTTCTTATGTTTCTaGATGGCAGTGTCTGTGAAA | + |
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Preference number: 2 (lower is better) Translates to: MFLCNCKRTDSWRSKYTVCFLCF*MAVSVK Trigger: TTTCACAGACACTGCCATGCAGAAACATAAGAAACA...GACAGTATACTTGCTGCGCCAACTGTCTGTCCTTTTGCAATTACAAAGAAACAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR-3UTR TCA 90 bp | GGACAGACAGTTGGCGCAGCAAGTATACTGTCAACATTTCTTAATACATACAATGTCCTCTGTCTTAAATaGTTCTCCTATCTCATTAAC | + |
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Preference number: 2 (lower is better) Translates to: GQTVGAASILSTFLNTYNVLCLK*FSYLIN Trigger: GTTAATGAGATAGGAGAATCATTTAAGACAGAGGAC...ATTGTATGTATTAAGAAATGTTGACAGTATACTTGCTGCGCCAACTGTCTGTCC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR GCA 72 bp | AAAAGGAGAACAAGAAGATCCAGGTTCTCCCAGCGCTaGTCCATCCACATTAGCACCTCCGATGTCCTCTCC | + |
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Preference number: 3 (lower is better) Translates to: KRRTRRSRFSQR*SIHISTSDVLS Trigger: GGAGAGGACATCGGAGGTGCTAATGTGGATGGAGCAGCGCTGGGAGAACCTGGATCTTCTTGTTCTCCTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR TCA 72 bp | TTTGGCTATGAACTTCTGAGCAAGTTCCAAGGTGAGTaGGTTCTCACTAGTCTGGTAATCCACACAGCACAG | + |
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Preference number: 3 (lower is better) Translates to: FGYELLSKFQGE*VLTSLVIHTAQ Trigger: CTGTGCTGTGTGGATTACCAGACTAGTGAGAACTCACTCACCTTGGAACTTGCTCAGAAGTTCATAGCCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR GCA 72 bp | AAACGGGAACAGCCACGTAAATGCCACCTTCCACACTaGACATATTTTGGCTATGAACTTCTGAGCAAGTTC | + |
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Preference number: 3 (lower is better) Translates to: KREQPRKCHLPH*TYFGYELLSKF Trigger: GAACTTGCTCAGAAGTTCATAGCCAAAATATGTGCAGTGTGGAAGGTGGCATTTACGTGGCTGTTCCCGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR GCA 72 bp | ATATGCCATGAGAAAGCTTTGGTTGTAAACCTCTGGTaGTACTCTGCTTTCCATAGAACTCAGCCACCAGTG | + |
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Preference number: 3 (lower is better) Translates to: ICHEKALVVNLW*YSAFHRTQPPV Trigger: CACTGGTGGCTGAGTTCTATGGAAAGCAGAGTAGCACCAGAGGTTTACAACCAAAGCTTTCTCATGGCATAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR TCA 72 bp | ACCTTCCACACTGCACATATTTTGGCTATGAACTTCTaGGCAAGTTCCAAGGTGAGTGAGTTCTCACTAGTC | + |
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Preference number: 3 (lower is better) Translates to: TFHTAHILAMNF*ASSKVSEFSLV Trigger: GACTAGTGAGAACTCACTCACCTTGGAACTTGCTCAGAAGTTCATAGCCAAAATATGTGCAGTGTGGAAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR GCA 72 bp | CACACGTATATGAGCCAAATCTTCTGTCACTTAGACTaGTTTCATGCCTTCTGTATAATGGCTAAGGGACAC | + |
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Preference number: 3 (lower is better) Translates to: HTYMSQIFCHLD*FHAFCIMAKGH Trigger: GTGTCCCTTAGCCATTATACAGAAGGCATGAAAGCAGTCTAAGTGACAGAAGATTTGGCTCATATACGTGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR-3UTR CAA 90 bp | CATCATTTCAAACCTGGGCCAGTGTCTCTTTGTTTCTTATGTTTCTGCATGGCATTCTGTCCATGTTCCTaGGGAAAAGGAGAACAAGAA | + |
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Preference number: 3 (lower is better) Translates to: HHFKPGPVSLCFLCFCMAFCPCS*GKGEQE Trigger: TTCTTGTTCTCCTTTTCCCAAGGAACATGGACAGAA...TGCCATGCAGAAACATAAGAAACAAAGAGACACTGGCCCAGGTTTGAAATGATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR-3UTR CAA 90 bp | GTTGGCGCAGCAAGTATACTGTCAACATTTCTTAATACATACAATCAATCCCACTGCCATGAGAAAGCTTaGGTTGTAAACCTCTGGTGC | + |
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Preference number: 3 (lower is better) Translates to: VGAASILSTFLNTYNQSHCHEKA*VVNLWC Trigger: GCACCAGAGGTTTACAACCAAAGCTTTCTCATGGCA...GTGGGATTGATTGTATGTATTAAGAAATGTTGACAGTATACTTGCTGCGCCAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR TCA 72 bp | ACATACAATCAATCCCACATTACAGATGTGTGTACATaGATAACATCATTTCAAACCTGGGCCAGTGTCTCT | + |
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Preference number: 3 (lower is better) Translates to: TYNQSHITDVCT*ITSFQTWASVS Trigger: AGAGACACTGGCCCAGGTTTGAAATGATGTTATTCATGTACACACATCTGTAATGTGGGATTGATTGTATGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| CDS-3UTR GCA 90 bp | CTCACTAGTCTGGTAATCCACACAGCACAGCTCTGCGTCCCGATGCCCCTCGGGGCATGTCCCCGGAGGTaGTGGCTCGAGGCGGACATC | + |
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Preference number: 4 (lower is better) Translates to: LTSLVIHTAQLCVPMPLGACPRR*WLEADI Trigger: GATGTCCGCCTCGAGCCAGCACCTCCGGGGACATGC...CCCGAGGGGCATCGGGACGCAGAGCTGTGCTGTGTGGATTACCAGACTAGTGAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| CDS-3UTR GCA 90 bp | TGTGCTAGGCAGGCTCCTTTTGAGATCCAGGTAACACCTCAGTTGAGTGGCCACGATCAGGTGGTGACCTaGATGTCCCCGGAGGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: CARQAPFEIQVTPQLSGHDQVVT*MSPEVL Trigger: CAGCACCTCCGGGGACATGCAGGTCACCACCTGATC...GTGGCCACTCAACTGAGGTGTTACCTGGATCTCAAAAGGAGCCTGCCTAGCACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| CDS-3UTR CCA 90 bp | AGTCAGCCAAGTTCAAACCAAAGTTTAACCTATAAACAGGTAGCACCCATTCCCTGTCCCCGGAGGTGCTaGCTCGAGGCGGACATCAGC | + |
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Preference number: 4 (lower is better) Translates to: SQPSSNQSLTYKQVAPIPCPRRC*LEADIS Trigger: GCTGATGTCCGCCTCGAGCCAGCACCTCCGGGGACA...GGGAATGGGTGCTACCTGTTTATAGGTTAAACTTTGGTTTGAACTTGGCTGACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| CDS-3UTR GCA 90 bp | GTTGTAAACCTCTGGTGCTACTCTGCTTTCCATAGAACTCAGCCACCAGTGTACCTATGCGGTTCTTATTaGAGCAGCGGTGCACGGCGA | + |
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Preference number: 4 (lower is better) Translates to: VVNLWCYSAFHRTQPPVYLCGSY*SSGARR Trigger: TCGCCGTGCACCGCTGCTGCAATAAGAACCGCATAG...GTACACTGGTGGCTGAGTTCTATGGAAAGCAGAGTAGCACCAGAGGTTTACAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| CDS-3UTR TCA 90 bp | ATGTTTCTTTGTAATTGCAAAAGGACAGACAGTTGGCGCAGCAAGTATACTGTCGGCTTGATCAGGTGGTaGCCTGCATGTCCCCGGAGG | + |
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Preference number: 4 (lower is better) Translates to: MFLCNCKRTDSWRSKYTVGLIRW*PACPRR Trigger: CCTCCGGGGACATGCAGGTCACCACCTGATCAAGCC...GACAGTATACTTGCTGCGCCAACTGTCTGTCCTTTTGCAATTACAAAGAAACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| 3UTR CAA 72 bp | TCGGCCTGGGTCCTTTTGTACTTCTGTCCATGTTCCTaGGGAAAAGGAGAACAAGAAGATCCAGGTTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: SAWVLLYFCPCS*GKGEQEDPGSP Trigger: GGGAGAACCTGGATCTTCTTGTTCTCCTTTTCCCAAGGAACATGGACAGAAGTACAAAAGGACCCAGGCCGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| CDS-3UTR GCA 90 bp | TTTCTTTGTAATTGCAAAAGGACAGACAGTTGGCGCAGCAAGTATACTGTCAACTTATTGCAGCAGCGGTaGACGGCGACCACCTCGCAG | + |
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Preference number: 4 (lower is better) Translates to: FLCNCKRTDSWRSKYTVNLLQQR*TATTSQ Trigger: CTGCGAGGTGGTCGCCGTGCACCGCTGCTGCAATAA...GTTGACAGTATACTTGCTGCGCCAACTGTCTGTCCTTTTGCAATTACAAAGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| CDS-3UTR CCA 90 bp | ATGTTTCTTTGTAATTGCAAAAGGACAGACAGTTGGCGCAGCAAGTATACTGTCGCCAGCCACCTGGCCTaGGAAGCAGGAACATTTGAC | + |
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Preference number: 4 (lower is better) Translates to: MFLCNCKRTDSWRSKYTVASHLA*EAGTFD Trigger: GTCAAATGTTCCTGCTTCCCAGGCCAGGTGGCTGGC...GACAGTATACTTGCTGCGCCAACTGTCTGTCCTTTTGCAATTACAAAGAAACAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| CDS-3UTR TCA 90 bp | TTCTGTCACTTAGACTGCTTTCATGCCTTCTGTATAATGGCTAAGGGACACATTGAACATTTGACCGTCTaGGAGCGCTCCTCTATGCGG | + |
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Preference number: 4 (lower is better) Translates to: FCHLDCFHAFCIMAKGHIEHLTV*ERSSMR Trigger: CCGCATAGAGGAGCGCTCTCAGACGGTCAAATGTTC...AATGTGTCCCTTAGCCATTATACAGAAGGCATGAAAGCAGTCTAAGTGACAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| CDS-3UTR TCA 90 bp | GGACAGACAGTTGGCGCAGCAAGTATACTGTCAACATTTCTTAATACATACAATGGAAGCAGGAACATTTaGCCGTCTGAGAGCGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: GQTVGAASILSTFLNTYNGSRNI*PSESAP Trigger: AGGAGCGCTCTCAGACGGTCAAATGTTCCTGCTTCC...ATTGTATGTATTAAGAAATGTTGACAGTATACTTGCTGCGCCAACTGTCTGTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| CDS-3UTR GCA 90 bp | AATAACATCATTTCAAACCTGGGCCAGTGTCTCTTTGTTTCTTATGTTTCTGCAAACACAAGAAGGCTGTaGCCGAGTTGTGCCAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: NNIISNLGQCLFVSYVSANTRRL*PSCASH Trigger: GTGGCTGGCACAACTCGGGCACAGCCTTCTTGTGTT...TGCAGAAACATAAGAAACAAAGAGACACTGGCCCAGGTTTGAAATGATGTTATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| CDS-3UTR CCA 90 bp | GTTGGCGCAGCAAGTATACTGTCAACATTTCTTAATACATACAATCAATCCCACAAGCAAGGATTCATGTaGCACCACCACTTCTCAATC | + |
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Preference number: 4 (lower is better) Translates to: VGAASILSTFLNTYNQSHKQGFM*HHHFSI Trigger: GATTGAGAAGTGGTGGTGCCACATGAATCCTTGCTT...GTGGGATTGATTGTATGTATTAAGAAATGTTGACAGTATACTTGCTGCGCCAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| CDS-3UTR CAA 90 bp | CATGTTCCTTGGGAAAAGGAGAACAAGAAGATCCAGGTTCTCCCAGCGCTGCTCTCTATGCGGTTCTTATaGCAGCAGCGGTGCACGGCG | + |
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Preference number: 5 (lower is better) Translates to: HVPWEKENKKIQVLPALLSMRFL*QQRCTA Trigger: CGCCGTGCACCGCTGCTGCAATAAGAACCGCATAGA...GAGCAGCGCTGGGAGAACCTGGATCTTCTTGTTCTCCTTTTCCCAAGGAACATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| CDS-3UTR CAA 90 bp | ATGTTTCTTTGTAATTGCAAAAGGACAGACAGTTGGCGCAGCAAGTATACTGTCAAGGCTGTGCCCGAGTaGTGCCAGCCACCTGGCCTG | + |
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Preference number: 5 (lower is better) Translates to: MFLCNCKRTDSWRSKYTVKAVPE*CQPPGL Trigger: CAGGCCAGGTGGCTGGCACAACTCGGGCACAGCCTT...GACAGTATACTTGCTGCGCCAACTGTCTGTCCTTTTGCAATTACAAAGAAACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| CDS CCA 90 bp | TCTGGAAGCACTTTACAGTCCTCTCCTTCCAAGCAAGGATTCATGTaGCACCACCACTTCTCAATCACAATGGCAGCTTCAACACAAGAA | + |
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Preference number: 5 (lower is better) Translates to: SGSTLQSSPSKQGFM*HHHFSITMAASTQE Trigger: TTCTTGTGTTGAAGCTGCCATTGTGATTGAGAAGTGGTGGTGCCACATGAATCCTTGCTTGGAAGGAGAGGACTGTAAAGTGCTTCCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| CDS TCA 72 bp | AGCGGTGCACGGCGACCACCTCGCAGGTACCTGGCTTaGTCAGGTGGTGACCTGCATGTCCCCGGAGGTGCT | + |
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Preference number: 6 (lower is better) Translates to: SGARRPPRRYLA*SGGDLHVPGGA Trigger: AGCACCTCCGGGGACATGCAGGTCACCACCTGATCAAGCCAGGTACCTGCGAGGTGGTCGCCGTGCACCGCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| CDS GCA 72 bp | CTCAATCACAATGGCAGCTTCAACACAAGAAGGCTGTaGCCGAGTTGTGCCAGCCACCTGGCCTGGGAAGCA | + |
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Preference number: 6 (lower is better) Translates to: LNHNGSFNTRRL*PSCASHLAWEA Trigger: TGCTTCCCAGGCCAGGTGGCTGGCACAACTCGGGCACAGCCTTCTTGTGTTGAAGCTGCCATTGTGATTGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| CDS CCA 72 bp | TTTATTGCCACTGCTACAGGACCAACCCGAAGAGTCTaGAAGCACTTTACAGTCCTCTCCTTCCAAGCAAGG | + |
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Preference number: 6 (lower is better) Translates to: FIATATGPTRRV*KHFTVLSFQAR Trigger: CCTTGCTTGGAAGGAGAGGACTGTAAAGTGCTTCCAGACTCTTCGGGTTGGTCCTGTAGCAGTGGCAATAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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| CDS CCA 72 bp | ACTTTACAGTCCTCTCCTTCCAAGCAAGGATTCATGTaGCACCACCACTTCTCAATCACAATGGCAGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: TLQSSPSKQGFM*HHHFSITMAAS Trigger: TGAAGCTGCCATTGTGATTGAGAAGTGGTGGTGCCACATGAATCCTTGCTTGGAAGGAGAGGACTGTAAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089295.6 |
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