Pregenerated sensors for TAFA2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044071Ensembl transcript IDs: ENSMUST00000050756.8, ENSMUST00000238972.2
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | AGAACAGTCACAGCTGAAGCAAGGAACCTTAAAGGTGACAGTCTCTaGTGTCACCCCAGAAAACCAACTCTATCCCAGCTCCGTGGAGAA | + |
Preference number: 1 (lower is better) Translates to: RTVTAEARNLKGDSL*CHPRKPTLSQLRGE Trigger: TTCTCCACGGAGCTGGGATAGAGTTGGTTTTCTGGGGTGACACCAGAGACTGTCACCTTTAAGGTTCCTTGCTTCAGCTGTGACTGTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR CCA 90 bp | AGGAGCAAAAGAGCCAGGAACACATCAATGACAGGACAGTCAGCTTaGGAAGCAGCTTCAGACACAAGAACAGTCACAGCTGAAGCAAGG | + |
Preference number: 1 (lower is better) Translates to: RSKRARNTSMTGQSA*EAASDTRTVTAEAR Trigger: CCTTGCTTCAGCTGTGACTGTTCTTGTGTCTGAAGCTGCTTCCCAAGCTGACTGTCCTGTCATTGATGTGTTCCTGGCTCTTTTGCTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR CCA 90 bp | ATGGAAAACCCTTGCTTTTATATGCCTTCAAACTATAAGTTTACATaGTATTATTATTATAGGGTGGCAACTCAGTACCCACTGTTCCCT | + |
Preference number: 1 (lower is better) Translates to: MENPCFYMPSNYKFT*YYYYRVATQYPLFP Trigger: AGGGAACAGTGGGTACTGAGTTGCCACCCTATAATAATAATACCATGTAAACTTATAGTTTGAAGGCATATAAAAGCAAGGGTTTTCCAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR-3UTR CCA 90 bp | AAAGCTGTGCATAGTCCTACTAGACAAGGAGCAAAAGAGCCAGGAACACATCAATCTATCCCAGCTCCGTaGAGAACTGCGCCCCCTTCC | + |
Preference number: 2 (lower is better) Translates to: KAVHSPTRQGAKEPGTHQSIPAP*RTAPPS Trigger: GGAAGGGGGCGCAGTTCTCCACGGAGCTGGGATAGA...TTGATGTGTTCCTGGCTCTTTTGCTCCTTGTCTAGTAGGACTATGCACAGCTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR-3UTR TCA 90 bp | AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGTTAGTTCACAGCGGATaGAGTCTTCAGGACCCAACG | + |
Preference number: 2 (lower is better) Translates to: RIPIKLPLSTPCWKSLQRLVHSG*SLQDPT Trigger: CGTTGGGTCCTGAAGACTTCATCCGCTGTGAACTAA...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR-3UTR GCA 90 bp | AAGTCCAACATAACTGTTACTCCTTACATTTTGACTCTGTGTAGAACTGATCCACCCTGGAAGGAAGGGTaGACTAGAGGCACAGAGCAC | + |
Preference number: 2 (lower is better) Translates to: KSNITVTPYILTLCRTDPPWKEG*TRGTEH Trigger: GTGCTCTGTGCCTCTAGTGCACCCTTCCTTCCAGGG...TGGATCAGTTCTACACAGAGTCAAAATGTAAGGAGTAACAGTTATGTTGGACTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR-3UTR TCA 90 bp | GGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAACCTAAGCCAGGAACACATCAATaGCAGGACAGTCAGCTTGGG | + |
Preference number: 2 (lower is better) Translates to: GTNSPLEYMNLHPRNQPKPGTHQ*QDSQLG Trigger: CCCAAGCTGACTGTCCTGTCATTGATGTGTTCCTGG...CTTAGGTTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR CAA 90 bp | CAACATGTAGGCTTTCAGAGTTTCAAGGTTAGAATACCAATAAAATaGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGGAACGT | + |
Preference number: 2 (lower is better) Translates to: QHVGFQSFKVRIPIK*PLSTPCWKSLQRER Trigger: ACGTTCCCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCTAACCTTGAAACTCTGAAAGCCTACATGTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR-3UTR TCA 90 bp | CTAACAGGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAATTAGTTCACAGCGGATaGAGTCTTCAGGACCCAACG | + |
Preference number: 2 (lower is better) Translates to: LTGTNSPLEYMNLHPRNQLVHSG*SLQDPT Trigger: CGTTGGGTCCTGAAGACTTCATCCGCTGTGAACTAA...TTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACCTGTTAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR-3UTR GCA 90 bp | AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGACGTCATCAAAGCTGTaGATAGTCCTACTAGACAAG | + |
Preference number: 2 (lower is better) Translates to: RIPIKLPLSTPCWKSLQRTSSKL*IVLLDK Trigger: CTTGTCTAGTAGGACTATGCACAGCTTTGATGACGT...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR-3UTR CCA 90 bp | GGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAACCTAAGAAAACCAACCAACCCTaGAAGGAAGGGTGCACTAGA | + |
Preference number: 2 (lower is better) Translates to: GTNSPLEYMNLHPRNQPKKTNQP*KEGCTR Trigger: TCTAGTGCACCCTTCCTTCCAGGGTTGGTTGGTTTT...CTTAGGTTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR-3UTR CCA 90 bp | CTAACAGGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAAAAAGGTGACAGTCTCTaGTGTCACCCCAGAAAACCA | + |
Preference number: 2 (lower is better) Translates to: LTGTNSPLEYMNLHPRNQKGDSL*CHPRKP Trigger: TGGTTTTCTGGGGTGACACCAGAGACTGTCACCTTT...TTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACCTGTTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR-3UTR CCA 90 bp | AAGTCCAACATAACTGTTACTCCTTACATTTTGACTCTGTGTAGAACTGATCCAAAAGGTGACAGTCTCTaGTGTCACCCCAGAAAACCA | + |
Preference number: 2 (lower is better) Translates to: KSNITVTPYILTLCRTDPKGDSL*CHPRKP Trigger: TGGTTTTCTGGGGTGACACCAGAGACTGTCACCTTT...TGGATCAGTTCTACACAGAGTCAAAATGTAAGGAGTAACAGTTATGTTGGACTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR-3UTR CCA 90 bp | GGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAACCTAAGCTGTCTACGCCATGCTaGAAGAGTTTACAAAGGGAA | + |
Preference number: 2 (lower is better) Translates to: GTNSPLEYMNLHPRNQPKLSTPC*KSLQRE Trigger: TTCCCTTTGTAAACTCTTCCAGCATGGCGTAGACAG...CTTAGGTTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR-3UTR CCA 90 bp | CTAACAGGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAAAAAACCAACCAACCCTaGAAGGAAGGGTGCACTAGA | + |
Preference number: 2 (lower is better) Translates to: LTGTNSPLEYMNLHPRNQKTNQP*KEGCTR Trigger: TCTAGTGCACCCTTCCTTCCAGGGTTGGTTGGTTTT...TTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACCTGTTAG 41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR-3UTR CCA 90 bp | CTAACAGGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAACTGTCTACGCCATGCTaGAAGAGTTTACAAAGGGAA | + |
Preference number: 2 (lower is better) Translates to: LTGTNSPLEYMNLHPRNQLSTPC*KSLQRE Trigger: TTCCCTTTGTAAACTCTTCCAGCATGGCGTAGACAG...TTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACCTGTTAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR-3UTR TCA 90 bp | GGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAACCTAAGAACTGGCTTTGTCAGTaGGTCCTAGAAATACAAGAA | + |
Preference number: 2 (lower is better) Translates to: GTNSPLEYMNLHPRNQPKNWLCQ*VLEIQE Trigger: TTCTTGTATTTCTAGGACTCACTGACAAAGCCAGTT...CTTAGGTTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR-3UTR GCA 90 bp | CTAACAGGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAAACGTCATCAAAGCTGTaGATAGTCCTACTAGACAAG | + |
Preference number: 2 (lower is better) Translates to: LTGTNSPLEYMNLHPRNQTSSKL*IVLLDK Trigger: CTTGTCTAGTAGGACTATGCACAGCTTTGATGACGT...TTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACCTGTTAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR-3UTR GCA 90 bp | AAGTCCAACATAACTGTTACTCCTTACATTTTGACTCTGTGTAGAACTGATCCAGACATGGAAAACCCTTaGTTTTATATGCCTTCAAAC | + |
Preference number: 2 (lower is better) Translates to: KSNITVTPYILTLCRTDPDMENP*FYMPSN Trigger: GTTTGAAGGCATATAAAAGCAAGGGTTTTCCATGTC...TGGATCAGTTCTACACAGAGTCAAAATGTAAGGAGTAACAGTTATGTTGGACTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR CCA 72 bp | ACAGCTGAAGCAAGGAACCTTAAAGGTGACAGTCTCTaGTGTCACCCCAGAAAACCAACTCTATCCCAGCTC | + |
Preference number: 3 (lower is better) Translates to: TAEARNLKGDSL*CHPRKPTLSQL Trigger: GAGCTGGGATAGAGTTGGTTTTCTGGGGTGACACCAGAGACTGTCACCTTTAAGGTTCCTTGCTTCAGCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR CCA 72 bp | AGAGCCAGGAACACATCAATGACAGGACAGTCAGCTTaGGAAGCAGCTTCAGACACAAGAACAGTCACAGCT | + |
Preference number: 3 (lower is better) Translates to: RARNTSMTGQSA*EAASDTRTVTA Trigger: AGCTGTGACTGTTCTTGTGTCTGAAGCTGCTTCCCAAGCTGACTGTCCTGTCATTGATGTGTTCCTGGCTCT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR-3UTR CAA 90 bp | AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGGACAGGACAGTCAGCTaGGGAAGCAGCTTCAGACAC | + |
Preference number: 3 (lower is better) Translates to: RIPIKLPLSTPCWKSLQRDRTVS*GSSFRH Trigger: GTGTCTGAAGCTGCTTCCCAAGCTGACTGTCCTGTC...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR-3UTR CAA 90 bp | AAAGCTGTGCATAGTCCTACTAGACAAGGAGCAAAAGAGCCAGGAACACATCAAGTCCAGTTTCTATTCTaGTGTCTCCATGAACCCAGC | + |
Preference number: 3 (lower is better) Translates to: KAVHSPTRQGAKEPGTHQVQFLF*CLHEPS Trigger: GCTGGGTTCATGGAGACACAAGAATAGAAACTGGAC...TTGATGTGTTCCTGGCTCTTTTGCTCCTTGTCTAGTAGGACTATGCACAGCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR-3UTR CAA 90 bp | GGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAACCTAAGGACAGGACAGTCAGCTaGGGAAGCAGCTTCAGACAC | + |
Preference number: 3 (lower is better) Translates to: GTNSPLEYMNLHPRNQPKDRTVS*GSSFRH Trigger: GTGTCTGAAGCTGCTTCCCAAGCTGACTGTCCTGTC...CTTAGGTTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR TCA 72 bp | CACGGCAGGAGTCCAGTTTCTATTCTTGTGTCTCCATaGACCCAGCCATCAGTATTATTTGATTTAGGAGTG | + |
Preference number: 3 (lower is better) Translates to: HGRSPVSILVSP*TQPSVLFDLGV Trigger: CACTCCTAAATCAAATAATACTGATGGCTGGGTTCATGGAGACACAAGAATAGAAACTGGACTCCTGCCGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR TCA 72 bp | TGGGGAAACGTGTCAGGTCGCCTACACATTGTTATATaGGGGATATACTCAGATCATTGTGATTTGCCAATG | + |
Preference number: 3 (lower is better) Translates to: WGNVSGRLHIVI*GIYSDHCDLPM Trigger: CATTGGCAAATCACAATGATCTGAGTATATCCCTCATATAACAATGTGTAGGCGACCTGACACGTTTCCCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR GCA 72 bp | GTTAGAATACCAATAAAATTGCCCCTGTCTACGCCATaGTGGAAGAGTTTACAAAGGGAACGTCATCAAAGC | + |
Preference number: 3 (lower is better) Translates to: VRIPIKLPLSTP*WKSLQRERHQS Trigger: GCTTTGATGACGTTCCCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCTAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR CCA 72 bp | AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTaGAAGAGTTTACAAAGGGAACGTCATCAAAGCTGT | + |
Preference number: 3 (lower is better) Translates to: RIPIKLPLSTPC*KSLQRERHQSC Trigger: ACAGCTTTGATGACGTTCCCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR-3UTR CAA 90 bp | AAGTCCAACATAACTGTTACTCCTTACATTTTGACTCTGTGTAGAACTGATCCAGTCCAGTTTCTATTCTaGTGTCTCCATGAACCCAGC | + |
Preference number: 3 (lower is better) Translates to: KSNITVTPYILTLCRTDPVQFLF*CLHEPS Trigger: GCTGGGTTCATGGAGACACAAGAATAGAAACTGGAC...TGGATCAGTTCTACACAGAGTCAAAATGTAAGGAGTAACAGTTATGTTGGACTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR-3UTR CAA 90 bp | GGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAACCTAAGAGAATACCAATAAAATaGCCCCTGTCTACGCCATGC | + |
Preference number: 3 (lower is better) Translates to: GTNSPLEYMNLHPRNQPKRIPIK*PLSTPC Trigger: GCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT...CTTAGGTTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR CCA 72 bp | CAAACTATAAGTTTACATGGTATTATTATTATAGGGTaGCAACTCAGTACCCACTGTTCCCTTCCCCCACAT | + |
Preference number: 3 (lower is better) Translates to: QTISLHGIIIIG*QLSTHCSLPPH Trigger: ATGTGGGGGAAGGGAACAGTGGGTACTGAGTTGCCACCCTATAATAATAATACCATGTAAACTTATAGTTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR-3UTR CAA 90 bp | AAGTCCAACATAACTGTTACTCCTTACATTTTGACTCTGTGTAGAACTGATCCACAGGTCGCCTACACATaGTTATATGAGGGATATACT | + |
Preference number: 3 (lower is better) Translates to: KSNITVTPYILTLCRTDPQVAYT*LYEGYT Trigger: AGTATATCCCTCATATAACAATGTGTAGGCGACCTG...TGGATCAGTTCTACACAGAGTCAAAATGTAAGGAGTAACAGTTATGTTGGACTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR TCA 72 bp | ACTGGCCAAGAATTGTTTGAATGGAACAACCGTAAGTaGGTATTTAGACCTTTGTGGTCAAGGAAAATCAAC | + |
Preference number: 3 (lower is better) Translates to: TGQELFEWNNRK*VFRPLWSRKIN Trigger: GTTGATTTTCCTTGACCACAAAGGTCTAAATACTCACTTACGGTTGTTCCATTCAAACAATTCTTGGCCAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR TCA 90 bp | AAAGCTGTGCATAGTCCTACTAGACAAGGAGCAAAAGAGCCAGGAACACATCAAGGAAGCAGGAGCACTTaGCCGTTTGGGACCGTTCTT | + |
Preference number: 4 (lower is better) Translates to: KAVHSPTRQGAKEPGTHQGSRST*PFGTVL Trigger: AAGAACGGTCCCAAACGGTCAAGTGCTCCTGCTTCC...TTGATGTGTTCCTGGCTCTTTTGCTCCTTGTCTAGTAGGACTATGCACAGCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR GCA 90 bp | GTCACGGCAGGAGTCCAGTTTCTATTCTTGTGTCTCCATGAACCCAGCCATCAGAACAGCTCCATCCTTTaGGATCTGGAAGGACTTTAC | + |
Preference number: 4 (lower is better) Translates to: VTAGVQFLFLCLHEPSHQNSSIL*DLEGLY Trigger: GTAAAGTCCTTCCAGATCGCAAAGGATGGAGCTGTT...CTGATGGCTGGGTTCATGGAGACACAAGAATAGAAACTGGACTCCTGCCGTGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR TCA 90 bp | AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGGGAAGCAGGAGCACTTaGCCGTTTGGGACCGTTCTT | + |
Preference number: 4 (lower is better) Translates to: RIPIKLPLSTPCWKSLQRGSRST*PFGTVL Trigger: AAGAACGGTCCCAAACGGTCAAGTGCTCCTGCTTCC...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR GCA 90 bp | AAGTCCAACATAACTGTTACTCCTTACATTTTGACTCTGTGTAGAACTGATCCAAGCTCGGGTAGTGCCTaGCACCTGCCCAGGGAAGCA | + |
Preference number: 4 (lower is better) Translates to: KSNITVTPYILTLCRTDPSSGSA*HLPREA Trigger: TGCTTCCCTGGGCAGGTGGCAGGCACTACCCGAGCT...TGGATCAGTTCTACACAGAGTCAAAATGTAAGGAGTAACAGTTATGTTGGACTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR TCA 90 bp | AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGAGGCATGGCTGCATATaGCACCACCACTTTTGTTCC | + |
Preference number: 4 (lower is better) Translates to: RIPIKLPLSTPCWKSLQRRHGCI*HHHFCS Trigger: GGAACAAAAGTGGTGGTGTCATATGCAGCCATGCCT...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR GCA 90 bp | AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGTTATTACAGCATCTGTaGAGCGCCACAACCTCGCAA | + |
Preference number: 4 (lower is better) Translates to: RIPIKLPLSTPCWKSLQRLLQHL*SATTSQ Trigger: TTGCGAGGTTGTGGCGCTGCACAGATGCTGTAATAA...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR CCA 90 bp | CTAACAGGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAATGTGATGGTTGGCGCTaGAAACGGCTTTCCCCCACA | + |
Preference number: 4 (lower is better) Translates to: LTGTNSPLEYMNLHPRNQCDGWR*KRLSPT Trigger: TGTGGGGGAAAGCCGTTTCCAGCGCCAACCATCACA...TTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACCTGTTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR CCA 90 bp | AAGTCCAACATAACTGTTACTCCTTACATTTTGACTCTGTGTAGAACTGATCCACTCTCCCTCCAGGCATaGCTGCATATGACACCACCA | + |
Preference number: 4 (lower is better) Translates to: KSNITVTPYILTLCRTDPLSLQA*LHMTPP Trigger: TGGTGGTGTCATATGCAGCCATGCCTGGAGGGAGAG...TGGATCAGTTCTACACAGAGTCAAAATGTAAGGAGTAACAGTTATGTTGGACTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR CCA 90 bp | AAAGCTGTGCATAGTCCTACTAGACAAGGAGCAAAAGAGCCAGGAACACATCAACCATCCTTTGCGATCTaGAAGGACTTTACATTCCTC | + |
Preference number: 4 (lower is better) Translates to: KAVHSPTRQGAKEPGTHQPSFAI*KDFTFL Trigger: GAGGAATGTAAAGTCCTTCCAGATCGCAAAGGATGG...TTGATGTGTTCCTGGCTCTTTTGCTCCTTGTCTAGTAGGACTATGCACAGCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR CAA 72 bp | ATCTTCAAGGTCACGGCAGGAGTCCAGTTTCTATTCTaGTGTCTCCATGAACCCAGCCATCAGTATTATTTG | + |
Preference number: 4 (lower is better) Translates to: IFKVTAGVQFLF*CLHEPSHQYYL Trigger: CAAATAATACTGATGGCTGGGTTCATGGAGACACAAGAATAGAAACTGGACTCCTGCCGTGACCTTGAAGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR TCA 90 bp | GGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAACCTAAGAGGCATGGCTGCATATaGCACCACCACTTTTGTTCC | + |
Preference number: 4 (lower is better) Translates to: GTNSPLEYMNLHPRNQPKRHGCI*HHHFCS Trigger: GGAACAAAAGTGGTGGTGTCATATGCAGCCATGCCT...CTTAGGTTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR GCA 90 bp | AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGAACAGCTCCATCCTTTaGGATCTGGAAGGACTTTAC | + |
Preference number: 4 (lower is better) Translates to: RIPIKLPLSTPCWKSLQRNSSIL*DLEGLY Trigger: GTAAAGTCCTTCCAGATCGCAAAGGATGGAGCTGTT...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR CCA 90 bp | AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGACTTTTGTTCCACTATaGATGCATCCACACAAGACG | + |
Preference number: 4 (lower is better) Translates to: RIPIKLPLSTPCWKSLQRTFVPL*MHPHKT Trigger: CGTCTTGTGTGGATGCATCCATAGTGGAACAAAAGT...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR CAA 72 bp | GGCTTTCAGAGTTTCAAGGTTAGAATACCAATAAAATaGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAA | + |
Preference number: 4 (lower is better) Translates to: GFQSFKVRIPIK*PLSTPCWKSLQ Trigger: TTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCTAACCTTGAAACTCTGAAAGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR GCA 90 bp | AAGTCCAACATAACTGTTACTCCTTACATTTTGACTCTGTGTAGAACTGATCCATTATTACAGCATCTGTaGAGCGCCACAACCTCGCAA | + |
Preference number: 4 (lower is better) Translates to: KSNITVTPYILTLCRTDPLLQHL*SATTSQ Trigger: TTGCGAGGTTGTGGCGCTGCACAGATGCTGTAATAA...TGGATCAGTTCTACACAGAGTCAAAATGTAAGGAGTAACAGTTATGTTGGACTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR CCA 90 bp | AAGTCCAACATAACTGTTACTCCTTACATTTTGACTCTGTGTAGAACTGATCCACCATCCTTTGCGATCTaGAAGGACTTTACATTCCTC | + |
Preference number: 4 (lower is better) Translates to: KSNITVTPYILTLCRTDPPSFAI*KDFTFL Trigger: GAGGAATGTAAAGTCCTTCCAGATCGCAAAGGATGG...TGGATCAGTTCTACACAGAGTCAAAATGTAAGGAGTAACAGTTATGTTGGACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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3UTR CAA 72 bp | TGGTTTTATGCAATTAAAAGTGAGTCAGGAATCACTTaGTCCCACAGTTTCATGAGGCAGTTGACTTTCAAT | + |
Preference number: 4 (lower is better) Translates to: WFYAIKSESGIT*SHSFMRQLTFN Trigger: ATTGAAAGTCAACTGCCTCATGAAACTGTGGGACAAAGTGATTCCTGACTCACTTTTAATTGCATAAAACCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS TCA 90 bp | TCTGGAAGGACTTTACATTCCTCTCCCTCCAGGCATGGCTGCATATaGCACCACCACTTTTGTTCCACTATGGATGCATCCACACAAGAC | + |
Preference number: 5 (lower is better) Translates to: SGRTLHSSPSRHGCI*HHHFCSTMDASTQD Trigger: GTCTTGTGTGGATGCATCCATAGTGGAACAAAAGTGGTGGTGTCATATGCAGCCATGCCTGGAGGGAGAGGAATGTAAAGTCCTTCCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR CAA 90 bp | AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGGGGAAGCAGGAGCACTaGACCGTTTGGGACCGTTCT | + |
Preference number: 5 (lower is better) Translates to: RIPIKLPLSTPCWKSLQRGKQEH*TVWDRS Trigger: AGAACGGTCCCAAACGGTCAAGTGCTCCTGCTTCCC...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR CAA 90 bp | GTCACGGCAGGAGTCCAGTTTCTATTCTTGTGTCTCCATGAACCCAGCCATCAGCTAGTTGTTTTTACTTaGTTTCCAGAGGAACAGCTC | + |
Preference number: 5 (lower is better) Translates to: VTAGVQFLFLCLHEPSHQLVVFT*FPEEQL Trigger: GAGCTGTTCCTCTGGAAACAAAGTAAAAACAACTAG...CTGATGGCTGGGTTCATGGAGACACAAGAATAGAAACTGGACTCCTGCCGTGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR CAA 90 bp | AAAGCTGTGCATAGTCCTACTAGACAAGGAGCAAAAGAGCCAGGAACACATCAAGAACAGCTCCATCCTTaGCGATCTGGAAGGACTTTA | + |
Preference number: 5 (lower is better) Translates to: KAVHSPTRQGAKEPGTHQEQLHP*RSGRTL Trigger: TAAAGTCCTTCCAGATCGCAAAGGATGGAGCTGTTC...TTGATGTGTTCCTGGCTCTTTTGCTCCTTGTCTAGTAGGACTATGCACAGCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR CAA 90 bp | AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGGAACAGCTCCATCCTTaGCGATCTGGAAGGACTTTA | + |
Preference number: 5 (lower is better) Translates to: RIPIKLPLSTPCWKSLQREQLHP*RSGRTL Trigger: TAAAGTCCTTCCAGATCGCAAAGGATGGAGCTGTTC...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR CAA 90 bp | AAAGCTGTGCATAGTCCTACTAGACAAGGAGCAAAAGAGCCAGGAACACATCAAGACCGTTCTTCTATCTaGTTCTTATTACAGCATCTG | + |
Preference number: 5 (lower is better) Translates to: KAVHSPTRQGAKEPGTHQDRSSI*FLLQHL Trigger: CAGATGCTGTAATAAGAACAAGATAGAAGAACGGTC...TTGATGTGTTCCTGGCTCTTTTGCTCCTTGTCTAGTAGGACTATGCACAGCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR CAA 90 bp | AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGTATCAGAAGCTTTCCTaGTGTTGCTTTCTGCAAGTA | + |
Preference number: 5 (lower is better) Translates to: RIPIKLPLSTPCWKSLQRYQKLS*CCFLQV Trigger: TACTTGCAGAAAGCAACACAAGGAAAGCTTCTGATA...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR CAA 90 bp | GGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAACCTAAGCTAGTTGTTTTTACTTaGTTTCCAGAGGAACAGCTC | + |
Preference number: 5 (lower is better) Translates to: GTNSPLEYMNLHPRNQPKLVVFT*FPEEQL Trigger: GAGCTGTTCCTCTGGAAACAAAGTAAAAACAACTAG...CTTAGGTTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR CAA 90 bp | CTAACAGGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAATATCAGAAGCTTTCCTaGTGTTGCTTTCTGCAAGTA | + |
Preference number: 5 (lower is better) Translates to: LTGTNSPLEYMNLHPRNQYQKLS*CCFLQV Trigger: TACTTGCAGAAAGCAACACAAGGAAAGCTTCTGATA...TTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACCTGTTAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS-3UTR CAA 90 bp | AAGTCCAACATAACTGTTACTCCTTACATTTTGACTCTGTGTAGAACTGATCCAGACCGTTCTTCTATCTaGTTCTTATTACAGCATCTG | + |
Preference number: 5 (lower is better) Translates to: KSNITVTPYILTLCRTDPDRSSI*FLLQHL Trigger: CAGATGCTGTAATAAGAACAAGATAGAAGAACGGTC...TGGATCAGTTCTACACAGAGTCAAAATGTAAGGAGTAACAGTTATGTTGGACTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS CAA 90 bp | GCAGCTCGGGTAGTGCCTGCCACCTGCCCAGGGAAGCAGGAGCACTaGACCGTTTGGGACCGTTCTTCTATCTTGTTCTTATTACAGCAT | + |
Preference number: 6 (lower is better) Translates to: AARVVPATCPGKQEH*TVWDRSSILFLLQH Trigger: ATGCTGTAATAAGAACAAGATAGAAGAACGGTCCCAAACGGTCAAGTGCTCCTGCTTCCCTGGGCAGGTGGCAGGCACTACCCGAGCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS CAA 72 bp | GTAGTGCCTGCCACCTGCCCAGGGAAGCAGGAGCACTaGACCGTTTGGGACCGTTCTTCTATCTTGTTCTTA | + |
Preference number: 6 (lower is better) Translates to: VVPATCPGKQEH*TVWDRSSILFL Trigger: TAAGAACAAGATAGAAGAACGGTCCCAAACGGTCAAGTGCTCCTGCTTCCCTGGGCAGGTGGCAGGCACTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS CAA 72 bp | TCCCTCCAGGCATGGCTGCATATGACACCACCACTTTaGTTCCACTATGGATGCATCCACACAAGACGGAGC | + |
Preference number: 6 (lower is better) Translates to: SLQAWLHMTPPL*FHYGCIHTRRS Trigger: GCTCCGTCTTGTGTGGATGCATCCATAGTGGAACAAAAGTGGTGGTGTCATATGCAGCCATGCCTGGAGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS CCA 72 bp | TTTGTTTCCAGAGGAACAGCTCCATCCTTTGCGATCTaGAAGGACTTTACATTCCTCTCCCTCCAGGCATGG | + |
Preference number: 6 (lower is better) Translates to: FVSRGTAPSFAI*KDFTFLSLQAW Trigger: CCATGCCTGGAGGGAGAGGAATGTAAAGTCCTTCCAGATCGCAAAGGATGGAGCTGTTCCTCTGGAAACAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS TCA 72 bp | ACTTTACATTCCTCTCCCTCCAGGCATGGCTGCATATaGCACCACCACTTTTGTTCCACTATGGATGCATCC | + |
Preference number: 6 (lower is better) Translates to: TLHSSPSRHGCI*HHHFCSTMDAS Trigger: GGATGCATCCATAGTGGAACAAAAGTGGTGGTGTCATATGCAGCCATGCCTGGAGGGAGAGGAATGTAAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS GCA 72 bp | GACCGTTCTTCTATCTTGTTCTTATTACAGCATCTGTaGAGCGCCACAACCTCGCAAGTCCCAGTTCTAACA | + |
Preference number: 6 (lower is better) Translates to: DRSSILFLLQHL*SATTSQVPVLT Trigger: TGTTAGAACTGGGACTTGCGAGGTTGTGGCGCTGCACAGATGCTGTAATAAGAACAAGATAGAAGAACGGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050756.8 ENSMUST00000238972.2 |
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CDS CAA 90 bp | TTTCCCCCACAAGGTCACTATAAAAATAATTATCAGAAGCTTTCCTaGTGTTGCTTTCTGCAAGTATCTCTTATTCATCTTGGTGATCAT | + |
Preference number: 6 (lower is better) Translates to: FPPQGHYKNNYQKLS*CCFLQVSLIHLGDH Trigger: ATGATCACCAAGATGAATAAGAGATACTTGCAGAAAGCAACACAAGGAAAGCTTCTGATAATTATTTTTATAGTGACCTTGTGGGGGAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000050756.8 |