RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TAFA2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044071

Ensembl transcript IDs: ENSMUST00000050756.8, ENSMUST00000238972.2

Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGAACAGTCACAGCTGAAGCAAGGAACCTTAAAGGTGACAGTCTCTaGTGTCACCCCAGAAAACCAACTCTATCCCAGCTCCGTGGAGAA +
Preference number: 1 (lower is better)
Translates to: RTVTAEARNLKGDSL*CHPRKPTLSQLRGE
Trigger: TTCTCCACGGAGCTGGGATAGAGTTGGTTTTCTGGGGTGACACCAGAGACTGTCACCTTTAAGGTTCCTTGCTTCAGCTGTGACTGTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR CCA 90 bp AGGAGCAAAAGAGCCAGGAACACATCAATGACAGGACAGTCAGCTTaGGAAGCAGCTTCAGACACAAGAACAGTCACAGCTGAAGCAAGG +
Preference number: 1 (lower is better)
Translates to: RSKRARNTSMTGQSA*EAASDTRTVTAEAR
Trigger: CCTTGCTTCAGCTGTGACTGTTCTTGTGTCTGAAGCTGCTTCCCAAGCTGACTGTCCTGTCATTGATGTGTTCCTGGCTCTTTTGCTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR CCA 90 bp ATGGAAAACCCTTGCTTTTATATGCCTTCAAACTATAAGTTTACATaGTATTATTATTATAGGGTGGCAACTCAGTACCCACTGTTCCCT +
Preference number: 1 (lower is better)
Translates to: MENPCFYMPSNYKFT*YYYYRVATQYPLFP
Trigger: AGGGAACAGTGGGTACTGAGTTGCCACCCTATAATAATAATACCATGTAAACTTATAGTTTGAAGGCATATAAAAGCAAGGGTTTTCCAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR-3UTR CCA 90 bp AAAGCTGTGCATAGTCCTACTAGACAAGGAGCAAAAGAGCCAGGAACACATCAATCTATCCCAGCTCCGTaGAGAACTGCGCCCCCTTCC +
Preference number: 2 (lower is better)
Translates to: KAVHSPTRQGAKEPGTHQSIPAP*RTAPPS
Trigger: GGAAGGGGGCGCAGTTCTCCACGGAGCTGGGATAGA...TTGATGTGTTCCTGGCTCTTTTGCTCCTTGTCTAGTAGGACTATGCACAGCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR-3UTR TCA 90 bp AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGTTAGTTCACAGCGGATaGAGTCTTCAGGACCCAACG +
Preference number: 2 (lower is better)
Translates to: RIPIKLPLSTPCWKSLQRLVHSG*SLQDPT
Trigger: CGTTGGGTCCTGAAGACTTCATCCGCTGTGAACTAA...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR-3UTR GCA 90 bp AAGTCCAACATAACTGTTACTCCTTACATTTTGACTCTGTGTAGAACTGATCCACCCTGGAAGGAAGGGTaGACTAGAGGCACAGAGCAC +
Preference number: 2 (lower is better)
Translates to: KSNITVTPYILTLCRTDPPWKEG*TRGTEH
Trigger: GTGCTCTGTGCCTCTAGTGCACCCTTCCTTCCAGGG...TGGATCAGTTCTACACAGAGTCAAAATGTAAGGAGTAACAGTTATGTTGGACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR-3UTR TCA 90 bp GGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAACCTAAGCCAGGAACACATCAATaGCAGGACAGTCAGCTTGGG +
Preference number: 2 (lower is better)
Translates to: GTNSPLEYMNLHPRNQPKPGTHQ*QDSQLG
Trigger: CCCAAGCTGACTGTCCTGTCATTGATGTGTTCCTGG...CTTAGGTTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR CAA 90 bp CAACATGTAGGCTTTCAGAGTTTCAAGGTTAGAATACCAATAAAATaGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGGAACGT +
Preference number: 2 (lower is better)
Translates to: QHVGFQSFKVRIPIK*PLSTPCWKSLQRER
Trigger: ACGTTCCCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCTAACCTTGAAACTCTGAAAGCCTACATGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR-3UTR TCA 90 bp CTAACAGGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAATTAGTTCACAGCGGATaGAGTCTTCAGGACCCAACG +
Preference number: 2 (lower is better)
Translates to: LTGTNSPLEYMNLHPRNQLVHSG*SLQDPT
Trigger: CGTTGGGTCCTGAAGACTTCATCCGCTGTGAACTAA...TTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACCTGTTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR-3UTR GCA 90 bp AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGACGTCATCAAAGCTGTaGATAGTCCTACTAGACAAG +
Preference number: 2 (lower is better)
Translates to: RIPIKLPLSTPCWKSLQRTSSKL*IVLLDK
Trigger: CTTGTCTAGTAGGACTATGCACAGCTTTGATGACGT...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR-3UTR CCA 90 bp GGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAACCTAAGAAAACCAACCAACCCTaGAAGGAAGGGTGCACTAGA +
Preference number: 2 (lower is better)
Translates to: GTNSPLEYMNLHPRNQPKKTNQP*KEGCTR
Trigger: TCTAGTGCACCCTTCCTTCCAGGGTTGGTTGGTTTT...CTTAGGTTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR-3UTR CCA 90 bp CTAACAGGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAAAAAGGTGACAGTCTCTaGTGTCACCCCAGAAAACCA +
Preference number: 2 (lower is better)
Translates to: LTGTNSPLEYMNLHPRNQKGDSL*CHPRKP
Trigger: TGGTTTTCTGGGGTGACACCAGAGACTGTCACCTTT...TTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACCTGTTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR-3UTR CCA 90 bp AAGTCCAACATAACTGTTACTCCTTACATTTTGACTCTGTGTAGAACTGATCCAAAAGGTGACAGTCTCTaGTGTCACCCCAGAAAACCA +
Preference number: 2 (lower is better)
Translates to: KSNITVTPYILTLCRTDPKGDSL*CHPRKP
Trigger: TGGTTTTCTGGGGTGACACCAGAGACTGTCACCTTT...TGGATCAGTTCTACACAGAGTCAAAATGTAAGGAGTAACAGTTATGTTGGACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR-3UTR CCA 90 bp GGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAACCTAAGCTGTCTACGCCATGCTaGAAGAGTTTACAAAGGGAA +
Preference number: 2 (lower is better)
Translates to: GTNSPLEYMNLHPRNQPKLSTPC*KSLQRE
Trigger: TTCCCTTTGTAAACTCTTCCAGCATGGCGTAGACAG...CTTAGGTTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR-3UTR CCA 90 bp CTAACAGGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAAAAAACCAACCAACCCTaGAAGGAAGGGTGCACTAGA +
Preference number: 2 (lower is better)
Translates to: LTGTNSPLEYMNLHPRNQKTNQP*KEGCTR
Trigger: TCTAGTGCACCCTTCCTTCCAGGGTTGGTTGGTTTT...TTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACCTGTTAG
41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR-3UTR CCA 90 bp CTAACAGGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAACTGTCTACGCCATGCTaGAAGAGTTTACAAAGGGAA +
Preference number: 2 (lower is better)
Translates to: LTGTNSPLEYMNLHPRNQLSTPC*KSLQRE
Trigger: TTCCCTTTGTAAACTCTTCCAGCATGGCGTAGACAG...TTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACCTGTTAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR-3UTR TCA 90 bp GGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAACCTAAGAACTGGCTTTGTCAGTaGGTCCTAGAAATACAAGAA +
Preference number: 2 (lower is better)
Translates to: GTNSPLEYMNLHPRNQPKNWLCQ*VLEIQE
Trigger: TTCTTGTATTTCTAGGACTCACTGACAAAGCCAGTT...CTTAGGTTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR-3UTR GCA 90 bp CTAACAGGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAAACGTCATCAAAGCTGTaGATAGTCCTACTAGACAAG +
Preference number: 2 (lower is better)
Translates to: LTGTNSPLEYMNLHPRNQTSSKL*IVLLDK
Trigger: CTTGTCTAGTAGGACTATGCACAGCTTTGATGACGT...TTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACCTGTTAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR-3UTR GCA 90 bp AAGTCCAACATAACTGTTACTCCTTACATTTTGACTCTGTGTAGAACTGATCCAGACATGGAAAACCCTTaGTTTTATATGCCTTCAAAC +
Preference number: 2 (lower is better)
Translates to: KSNITVTPYILTLCRTDPDMENP*FYMPSN
Trigger: GTTTGAAGGCATATAAAAGCAAGGGTTTTCCATGTC...TGGATCAGTTCTACACAGAGTCAAAATGTAAGGAGTAACAGTTATGTTGGACTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR CCA 72 bp ACAGCTGAAGCAAGGAACCTTAAAGGTGACAGTCTCTaGTGTCACCCCAGAAAACCAACTCTATCCCAGCTC +
Preference number: 3 (lower is better)
Translates to: TAEARNLKGDSL*CHPRKPTLSQL
Trigger: GAGCTGGGATAGAGTTGGTTTTCTGGGGTGACACCAGAGACTGTCACCTTTAAGGTTCCTTGCTTCAGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR CCA 72 bp AGAGCCAGGAACACATCAATGACAGGACAGTCAGCTTaGGAAGCAGCTTCAGACACAAGAACAGTCACAGCT +
Preference number: 3 (lower is better)
Translates to: RARNTSMTGQSA*EAASDTRTVTA
Trigger: AGCTGTGACTGTTCTTGTGTCTGAAGCTGCTTCCCAAGCTGACTGTCCTGTCATTGATGTGTTCCTGGCTCT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR-3UTR CAA 90 bp AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGGACAGGACAGTCAGCTaGGGAAGCAGCTTCAGACAC +
Preference number: 3 (lower is better)
Translates to: RIPIKLPLSTPCWKSLQRDRTVS*GSSFRH
Trigger: GTGTCTGAAGCTGCTTCCCAAGCTGACTGTCCTGTC...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR-3UTR CAA 90 bp AAAGCTGTGCATAGTCCTACTAGACAAGGAGCAAAAGAGCCAGGAACACATCAAGTCCAGTTTCTATTCTaGTGTCTCCATGAACCCAGC +
Preference number: 3 (lower is better)
Translates to: KAVHSPTRQGAKEPGTHQVQFLF*CLHEPS
Trigger: GCTGGGTTCATGGAGACACAAGAATAGAAACTGGAC...TTGATGTGTTCCTGGCTCTTTTGCTCCTTGTCTAGTAGGACTATGCACAGCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR-3UTR CAA 90 bp GGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAACCTAAGGACAGGACAGTCAGCTaGGGAAGCAGCTTCAGACAC +
Preference number: 3 (lower is better)
Translates to: GTNSPLEYMNLHPRNQPKDRTVS*GSSFRH
Trigger: GTGTCTGAAGCTGCTTCCCAAGCTGACTGTCCTGTC...CTTAGGTTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR TCA 72 bp CACGGCAGGAGTCCAGTTTCTATTCTTGTGTCTCCATaGACCCAGCCATCAGTATTATTTGATTTAGGAGTG +
Preference number: 3 (lower is better)
Translates to: HGRSPVSILVSP*TQPSVLFDLGV
Trigger: CACTCCTAAATCAAATAATACTGATGGCTGGGTTCATGGAGACACAAGAATAGAAACTGGACTCCTGCCGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR TCA 72 bp TGGGGAAACGTGTCAGGTCGCCTACACATTGTTATATaGGGGATATACTCAGATCATTGTGATTTGCCAATG +
Preference number: 3 (lower is better)
Translates to: WGNVSGRLHIVI*GIYSDHCDLPM
Trigger: CATTGGCAAATCACAATGATCTGAGTATATCCCTCATATAACAATGTGTAGGCGACCTGACACGTTTCCCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR GCA 72 bp GTTAGAATACCAATAAAATTGCCCCTGTCTACGCCATaGTGGAAGAGTTTACAAAGGGAACGTCATCAAAGC +
Preference number: 3 (lower is better)
Translates to: VRIPIKLPLSTP*WKSLQRERHQS
Trigger: GCTTTGATGACGTTCCCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR CCA 72 bp AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTaGAAGAGTTTACAAAGGGAACGTCATCAAAGCTGT +
Preference number: 3 (lower is better)
Translates to: RIPIKLPLSTPC*KSLQRERHQSC
Trigger: ACAGCTTTGATGACGTTCCCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR-3UTR CAA 90 bp AAGTCCAACATAACTGTTACTCCTTACATTTTGACTCTGTGTAGAACTGATCCAGTCCAGTTTCTATTCTaGTGTCTCCATGAACCCAGC +
Preference number: 3 (lower is better)
Translates to: KSNITVTPYILTLCRTDPVQFLF*CLHEPS
Trigger: GCTGGGTTCATGGAGACACAAGAATAGAAACTGGAC...TGGATCAGTTCTACACAGAGTCAAAATGTAAGGAGTAACAGTTATGTTGGACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR-3UTR CAA 90 bp GGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAACCTAAGAGAATACCAATAAAATaGCCCCTGTCTACGCCATGC +
Preference number: 3 (lower is better)
Translates to: GTNSPLEYMNLHPRNQPKRIPIK*PLSTPC
Trigger: GCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT...CTTAGGTTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR CCA 72 bp CAAACTATAAGTTTACATGGTATTATTATTATAGGGTaGCAACTCAGTACCCACTGTTCCCTTCCCCCACAT +
Preference number: 3 (lower is better)
Translates to: QTISLHGIIIIG*QLSTHCSLPPH
Trigger: ATGTGGGGGAAGGGAACAGTGGGTACTGAGTTGCCACCCTATAATAATAATACCATGTAAACTTATAGTTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR-3UTR CAA 90 bp AAGTCCAACATAACTGTTACTCCTTACATTTTGACTCTGTGTAGAACTGATCCACAGGTCGCCTACACATaGTTATATGAGGGATATACT +
Preference number: 3 (lower is better)
Translates to: KSNITVTPYILTLCRTDPQVAYT*LYEGYT
Trigger: AGTATATCCCTCATATAACAATGTGTAGGCGACCTG...TGGATCAGTTCTACACAGAGTCAAAATGTAAGGAGTAACAGTTATGTTGGACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR TCA 72 bp ACTGGCCAAGAATTGTTTGAATGGAACAACCGTAAGTaGGTATTTAGACCTTTGTGGTCAAGGAAAATCAAC +
Preference number: 3 (lower is better)
Translates to: TGQELFEWNNRK*VFRPLWSRKIN
Trigger: GTTGATTTTCCTTGACCACAAAGGTCTAAATACTCACTTACGGTTGTTCCATTCAAACAATTCTTGGCCAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR TCA 90 bp AAAGCTGTGCATAGTCCTACTAGACAAGGAGCAAAAGAGCCAGGAACACATCAAGGAAGCAGGAGCACTTaGCCGTTTGGGACCGTTCTT +
Preference number: 4 (lower is better)
Translates to: KAVHSPTRQGAKEPGTHQGSRST*PFGTVL
Trigger: AAGAACGGTCCCAAACGGTCAAGTGCTCCTGCTTCC...TTGATGTGTTCCTGGCTCTTTTGCTCCTTGTCTAGTAGGACTATGCACAGCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR GCA 90 bp GTCACGGCAGGAGTCCAGTTTCTATTCTTGTGTCTCCATGAACCCAGCCATCAGAACAGCTCCATCCTTTaGGATCTGGAAGGACTTTAC +
Preference number: 4 (lower is better)
Translates to: VTAGVQFLFLCLHEPSHQNSSIL*DLEGLY
Trigger: GTAAAGTCCTTCCAGATCGCAAAGGATGGAGCTGTT...CTGATGGCTGGGTTCATGGAGACACAAGAATAGAAACTGGACTCCTGCCGTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR TCA 90 bp AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGGGAAGCAGGAGCACTTaGCCGTTTGGGACCGTTCTT +
Preference number: 4 (lower is better)
Translates to: RIPIKLPLSTPCWKSLQRGSRST*PFGTVL
Trigger: AAGAACGGTCCCAAACGGTCAAGTGCTCCTGCTTCC...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR GCA 90 bp AAGTCCAACATAACTGTTACTCCTTACATTTTGACTCTGTGTAGAACTGATCCAAGCTCGGGTAGTGCCTaGCACCTGCCCAGGGAAGCA +
Preference number: 4 (lower is better)
Translates to: KSNITVTPYILTLCRTDPSSGSA*HLPREA
Trigger: TGCTTCCCTGGGCAGGTGGCAGGCACTACCCGAGCT...TGGATCAGTTCTACACAGAGTCAAAATGTAAGGAGTAACAGTTATGTTGGACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR TCA 90 bp AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGAGGCATGGCTGCATATaGCACCACCACTTTTGTTCC +
Preference number: 4 (lower is better)
Translates to: RIPIKLPLSTPCWKSLQRRHGCI*HHHFCS
Trigger: GGAACAAAAGTGGTGGTGTCATATGCAGCCATGCCT...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR GCA 90 bp AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGTTATTACAGCATCTGTaGAGCGCCACAACCTCGCAA +
Preference number: 4 (lower is better)
Translates to: RIPIKLPLSTPCWKSLQRLLQHL*SATTSQ
Trigger: TTGCGAGGTTGTGGCGCTGCACAGATGCTGTAATAA...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR CCA 90 bp CTAACAGGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAATGTGATGGTTGGCGCTaGAAACGGCTTTCCCCCACA +
Preference number: 4 (lower is better)
Translates to: LTGTNSPLEYMNLHPRNQCDGWR*KRLSPT
Trigger: TGTGGGGGAAAGCCGTTTCCAGCGCCAACCATCACA...TTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACCTGTTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR CCA 90 bp AAGTCCAACATAACTGTTACTCCTTACATTTTGACTCTGTGTAGAACTGATCCACTCTCCCTCCAGGCATaGCTGCATATGACACCACCA +
Preference number: 4 (lower is better)
Translates to: KSNITVTPYILTLCRTDPLSLQA*LHMTPP
Trigger: TGGTGGTGTCATATGCAGCCATGCCTGGAGGGAGAG...TGGATCAGTTCTACACAGAGTCAAAATGTAAGGAGTAACAGTTATGTTGGACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR CCA 90 bp AAAGCTGTGCATAGTCCTACTAGACAAGGAGCAAAAGAGCCAGGAACACATCAACCATCCTTTGCGATCTaGAAGGACTTTACATTCCTC +
Preference number: 4 (lower is better)
Translates to: KAVHSPTRQGAKEPGTHQPSFAI*KDFTFL
Trigger: GAGGAATGTAAAGTCCTTCCAGATCGCAAAGGATGG...TTGATGTGTTCCTGGCTCTTTTGCTCCTTGTCTAGTAGGACTATGCACAGCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR CAA 72 bp ATCTTCAAGGTCACGGCAGGAGTCCAGTTTCTATTCTaGTGTCTCCATGAACCCAGCCATCAGTATTATTTG +
Preference number: 4 (lower is better)
Translates to: IFKVTAGVQFLF*CLHEPSHQYYL
Trigger: CAAATAATACTGATGGCTGGGTTCATGGAGACACAAGAATAGAAACTGGACTCCTGCCGTGACCTTGAAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR TCA 90 bp GGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAACCTAAGAGGCATGGCTGCATATaGCACCACCACTTTTGTTCC +
Preference number: 4 (lower is better)
Translates to: GTNSPLEYMNLHPRNQPKRHGCI*HHHFCS
Trigger: GGAACAAAAGTGGTGGTGTCATATGCAGCCATGCCT...CTTAGGTTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR GCA 90 bp AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGAACAGCTCCATCCTTTaGGATCTGGAAGGACTTTAC +
Preference number: 4 (lower is better)
Translates to: RIPIKLPLSTPCWKSLQRNSSIL*DLEGLY
Trigger: GTAAAGTCCTTCCAGATCGCAAAGGATGGAGCTGTT...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR CCA 90 bp AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGACTTTTGTTCCACTATaGATGCATCCACACAAGACG +
Preference number: 4 (lower is better)
Translates to: RIPIKLPLSTPCWKSLQRTFVPL*MHPHKT
Trigger: CGTCTTGTGTGGATGCATCCATAGTGGAACAAAAGT...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR CAA 72 bp GGCTTTCAGAGTTTCAAGGTTAGAATACCAATAAAATaGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAA +
Preference number: 4 (lower is better)
Translates to: GFQSFKVRIPIK*PLSTPCWKSLQ
Trigger: TTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCTAACCTTGAAACTCTGAAAGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR GCA 90 bp AAGTCCAACATAACTGTTACTCCTTACATTTTGACTCTGTGTAGAACTGATCCATTATTACAGCATCTGTaGAGCGCCACAACCTCGCAA +
Preference number: 4 (lower is better)
Translates to: KSNITVTPYILTLCRTDPLLQHL*SATTSQ
Trigger: TTGCGAGGTTGTGGCGCTGCACAGATGCTGTAATAA...TGGATCAGTTCTACACAGAGTCAAAATGTAAGGAGTAACAGTTATGTTGGACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR CCA 90 bp AAGTCCAACATAACTGTTACTCCTTACATTTTGACTCTGTGTAGAACTGATCCACCATCCTTTGCGATCTaGAAGGACTTTACATTCCTC +
Preference number: 4 (lower is better)
Translates to: KSNITVTPYILTLCRTDPPSFAI*KDFTFL
Trigger: GAGGAATGTAAAGTCCTTCCAGATCGCAAAGGATGG...TGGATCAGTTCTACACAGAGTCAAAATGTAAGGAGTAACAGTTATGTTGGACTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
3UTR CAA 72 bp TGGTTTTATGCAATTAAAAGTGAGTCAGGAATCACTTaGTCCCACAGTTTCATGAGGCAGTTGACTTTCAAT +
Preference number: 4 (lower is better)
Translates to: WFYAIKSESGIT*SHSFMRQLTFN
Trigger: ATTGAAAGTCAACTGCCTCATGAAACTGTGGGACAAAGTGATTCCTGACTCACTTTTAATTGCATAAAACCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS TCA 90 bp TCTGGAAGGACTTTACATTCCTCTCCCTCCAGGCATGGCTGCATATaGCACCACCACTTTTGTTCCACTATGGATGCATCCACACAAGAC +
Preference number: 5 (lower is better)
Translates to: SGRTLHSSPSRHGCI*HHHFCSTMDASTQD
Trigger: GTCTTGTGTGGATGCATCCATAGTGGAACAAAAGTGGTGGTGTCATATGCAGCCATGCCTGGAGGGAGAGGAATGTAAAGTCCTTCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR CAA 90 bp AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGGGGAAGCAGGAGCACTaGACCGTTTGGGACCGTTCT +
Preference number: 5 (lower is better)
Translates to: RIPIKLPLSTPCWKSLQRGKQEH*TVWDRS
Trigger: AGAACGGTCCCAAACGGTCAAGTGCTCCTGCTTCCC...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR CAA 90 bp GTCACGGCAGGAGTCCAGTTTCTATTCTTGTGTCTCCATGAACCCAGCCATCAGCTAGTTGTTTTTACTTaGTTTCCAGAGGAACAGCTC +
Preference number: 5 (lower is better)
Translates to: VTAGVQFLFLCLHEPSHQLVVFT*FPEEQL
Trigger: GAGCTGTTCCTCTGGAAACAAAGTAAAAACAACTAG...CTGATGGCTGGGTTCATGGAGACACAAGAATAGAAACTGGACTCCTGCCGTGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR CAA 90 bp AAAGCTGTGCATAGTCCTACTAGACAAGGAGCAAAAGAGCCAGGAACACATCAAGAACAGCTCCATCCTTaGCGATCTGGAAGGACTTTA +
Preference number: 5 (lower is better)
Translates to: KAVHSPTRQGAKEPGTHQEQLHP*RSGRTL
Trigger: TAAAGTCCTTCCAGATCGCAAAGGATGGAGCTGTTC...TTGATGTGTTCCTGGCTCTTTTGCTCCTTGTCTAGTAGGACTATGCACAGCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR CAA 90 bp AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGGAACAGCTCCATCCTTaGCGATCTGGAAGGACTTTA +
Preference number: 5 (lower is better)
Translates to: RIPIKLPLSTPCWKSLQREQLHP*RSGRTL
Trigger: TAAAGTCCTTCCAGATCGCAAAGGATGGAGCTGTTC...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR CAA 90 bp AAAGCTGTGCATAGTCCTACTAGACAAGGAGCAAAAGAGCCAGGAACACATCAAGACCGTTCTTCTATCTaGTTCTTATTACAGCATCTG +
Preference number: 5 (lower is better)
Translates to: KAVHSPTRQGAKEPGTHQDRSSI*FLLQHL
Trigger: CAGATGCTGTAATAAGAACAAGATAGAAGAACGGTC...TTGATGTGTTCCTGGCTCTTTTGCTCCTTGTCTAGTAGGACTATGCACAGCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR CAA 90 bp AGAATACCAATAAAATTGCCCCTGTCTACGCCATGCTGGAAGAGTTTACAAAGGTATCAGAAGCTTTCCTaGTGTTGCTTTCTGCAAGTA +
Preference number: 5 (lower is better)
Translates to: RIPIKLPLSTPCWKSLQRYQKLS*CCFLQV
Trigger: TACTTGCAGAAAGCAACACAAGGAAAGCTTCTGATA...CCTTTGTAAACTCTTCCAGCATGGCGTAGACAGGGGCAATTTTATTGGTATTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR CAA 90 bp GGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAACCTAAGCTAGTTGTTTTTACTTaGTTTCCAGAGGAACAGCTC +
Preference number: 5 (lower is better)
Translates to: GTNSPLEYMNLHPRNQPKLVVFT*FPEEQL
Trigger: GAGCTGTTCCTCTGGAAACAAAGTAAAAACAACTAG...CTTAGGTTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR CAA 90 bp CTAACAGGTACAAATTCTCCTCTAGAATATATGAACCTCCATCCTAGAAACCAATATCAGAAGCTTTCCTaGTGTTGCTTTCTGCAAGTA +
Preference number: 5 (lower is better)
Translates to: LTGTNSPLEYMNLHPRNQYQKLS*CCFLQV
Trigger: TACTTGCAGAAAGCAACACAAGGAAAGCTTCTGATA...TTGGTTTCTAGGATGGAGGTTCATATATTCTAGAGGAGAATTTGTACCTGTTAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS-3UTR CAA 90 bp AAGTCCAACATAACTGTTACTCCTTACATTTTGACTCTGTGTAGAACTGATCCAGACCGTTCTTCTATCTaGTTCTTATTACAGCATCTG +
Preference number: 5 (lower is better)
Translates to: KSNITVTPYILTLCRTDPDRSSI*FLLQHL
Trigger: CAGATGCTGTAATAAGAACAAGATAGAAGAACGGTC...TGGATCAGTTCTACACAGAGTCAAAATGTAAGGAGTAACAGTTATGTTGGACTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS CAA 90 bp GCAGCTCGGGTAGTGCCTGCCACCTGCCCAGGGAAGCAGGAGCACTaGACCGTTTGGGACCGTTCTTCTATCTTGTTCTTATTACAGCAT +
Preference number: 6 (lower is better)
Translates to: AARVVPATCPGKQEH*TVWDRSSILFLLQH
Trigger: ATGCTGTAATAAGAACAAGATAGAAGAACGGTCCCAAACGGTCAAGTGCTCCTGCTTCCCTGGGCAGGTGGCAGGCACTACCCGAGCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS CAA 72 bp GTAGTGCCTGCCACCTGCCCAGGGAAGCAGGAGCACTaGACCGTTTGGGACCGTTCTTCTATCTTGTTCTTA +
Preference number: 6 (lower is better)
Translates to: VVPATCPGKQEH*TVWDRSSILFL
Trigger: TAAGAACAAGATAGAAGAACGGTCCCAAACGGTCAAGTGCTCCTGCTTCCCTGGGCAGGTGGCAGGCACTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS CAA 72 bp TCCCTCCAGGCATGGCTGCATATGACACCACCACTTTaGTTCCACTATGGATGCATCCACACAAGACGGAGC +
Preference number: 6 (lower is better)
Translates to: SLQAWLHMTPPL*FHYGCIHTRRS
Trigger: GCTCCGTCTTGTGTGGATGCATCCATAGTGGAACAAAAGTGGTGGTGTCATATGCAGCCATGCCTGGAGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS CCA 72 bp TTTGTTTCCAGAGGAACAGCTCCATCCTTTGCGATCTaGAAGGACTTTACATTCCTCTCCCTCCAGGCATGG +
Preference number: 6 (lower is better)
Translates to: FVSRGTAPSFAI*KDFTFLSLQAW
Trigger: CCATGCCTGGAGGGAGAGGAATGTAAAGTCCTTCCAGATCGCAAAGGATGGAGCTGTTCCTCTGGAAACAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS TCA 72 bp ACTTTACATTCCTCTCCCTCCAGGCATGGCTGCATATaGCACCACCACTTTTGTTCCACTATGGATGCATCC +
Preference number: 6 (lower is better)
Translates to: TLHSSPSRHGCI*HHHFCSTMDAS
Trigger: GGATGCATCCATAGTGGAACAAAAGTGGTGGTGTCATATGCAGCCATGCCTGGAGGGAGAGGAATGTAAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS GCA 72 bp GACCGTTCTTCTATCTTGTTCTTATTACAGCATCTGTaGAGCGCCACAACCTCGCAAGTCCCAGTTCTAACA +
Preference number: 6 (lower is better)
Translates to: DRSSILFLLQHL*SATTSQVPVLT
Trigger: TGTTAGAACTGGGACTTGCGAGGTTGTGGCGCTGCACAGATGCTGTAATAAGAACAAGATAGAAGAACGGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050756.8
ENSMUST00000238972.2
CDS CAA 90 bp TTTCCCCCACAAGGTCACTATAAAAATAATTATCAGAAGCTTTCCTaGTGTTGCTTTCTGCAAGTATCTCTTATTCATCTTGGTGATCAT +
Preference number: 6 (lower is better)
Translates to: FPPQGHYKNNYQKLS*CCFLQVSLIHLGDH
Trigger: ATGATCACCAAGATGAATAAGAGATACTTGCAGAAAGCAACACAAGGAAAGCTTCTGATAATTATTTTTATAGTGACCTTGTGGGGGAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000050756.8