RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TAF4B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000054321

Ensembl transcript IDs: ENSMUST00000169862.2, ENSMUST00000234789.2

Found 200 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTCGTAGAGCTCAAAGGCAGAGACGGGAAGATGCACAGGGGCTGCTaGGCAGCCTCTCTAGCCAAGAGTAAGCTCCAGACTCAGTGCCTG +
Preference number: 1 (lower is better)
Translates to: LVELKGRDGKMHRGC*AASLAKSKLQTQCL
Trigger: CAGGCACTGAGTCTGGAGCTTACTCTTGGCTAGAGAGGCTGCCCAGCAGCCCCTGTGCATCTTCCCGTCTCTGCCTTTGAGCTCTACGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR CCA 90 bp AGGCCACAAAGACAAGACGTAGCAAAAGCTTGTCAGTGTAAGCAGTaGTCTTCCATACTCCAAGGGAGGGTTCAGAACAGTGCAACAGTG +
Preference number: 1 (lower is better)
Translates to: RPQRQDVAKACQCKQ*SSILQGRVQNSATV
Trigger: CACTGTTGCACTGTTCTGAACCCTCCCTTGGAGTATGGAAGACCACTGCTTACACTGACAAGCTTTTGCTACGTCTTGTCTTTGTGGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR TCA 90 bp TATACATACACTGAGTTTCAGAAAGCATCTGAATTCTCAGCGGCATaGACCCACAGGCCACAAAGACAAGACGTAGCAAAAGCTTGTCAG +
Preference number: 1 (lower is better)
Translates to: YTYTEFQKASEFSAA*THRPQRQDVAKACQ
Trigger: CTGACAAGCTTTTGCTACGTCTTGTCTTTGTGGCCTGTGGGTTCATGCCGCTGAGAATTCAGATGCTTTCTGAAACTCAGTGTATGTATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR TCA 90 bp CTGTATAATTATCAGCTATGTAATTCTGGCTCAACTAATTCAAGTTaGCTTTGCCTCTACTCTGTAGCTTGTCACACTTCAACTACAGAA +
Preference number: 1 (lower is better)
Translates to: LYNYQLCNSGSTNSS*LCLYSVACHTSTTE
Trigger: TTCTGTAGTTGAAGTGTGACAAGCTACAGAGTAGAGGCAAAGTCAACTTGAATTAGTTGAGCCAGAATTACATAGCTGATAATTATACAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR-3UTR GCA 90 bp CTCCTCAGAGAGAGGTACATAGTGTGTTGCTCACGTTTAGAGCCACCCCCTAAGGAGGGTTCAGAACAGTaGAACAGTGCGCTCAGTGTC +
Preference number: 2 (lower is better)
Translates to: LLRERYIVCCSRLEPPPKEGSEQ*NSALSV
Trigger: GACACTGAGCGCACTGTTGCACTGTTCTGAACCCTC...CTTAGGGGGTGGCTCTAAACGTGAGCAACACACTATGTACCTCTCTCTGAGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR-3UTR GCA 90 bp TGTACAACCCAAGTTTCAAAATGTACATTAAGGAACTTAGGGACTGGCTCAGTGGCAGAGACGGGAAGATaGACAGGGGCTGCTGGGCAG +
Preference number: 2 (lower is better)
Translates to: CTTQVSKCTLRNLGTGSVAETGR*TGAAGQ
Trigger: CTGCCCAGCAGCCCCTGTGCATCTTCCCGTCTCTGC...CACTGAGCCAGTCCCTAAGTTCCTTAATGTACATTTTGAAACTTGGGTTGTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR-3UTR CCA 90 bp CTCCTCAGAGAGAGGTACATAGTGTGTTGCTCACGTTTAGAGCCACCCCCTAAGTGTCAGTGTAAGCAGTaGTCTTCCATACTCCAAGGG +
Preference number: 2 (lower is better)
Translates to: LLRERYIVCCSRLEPPPKCQCKQ*SSILQG
Trigger: CCCTTGGAGTATGGAAGACCACTGCTTACACTGACA...CTTAGGGGGTGGCTCTAAACGTGAGCAACACACTATGTACCTCTCTCTGAGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR-3UTR CCA 90 bp AGGTACATAGTGTGTTGCTCACGTTTAGAGCCACCCCCTAAGAGCAAGACACATAACAAGGACCAGCTTTaGCATTCCCTGAGCAGCCAC +
Preference number: 2 (lower is better)
Translates to: RYIVCCSRLEPPPKSKTHNKDQL*HSLSSH
Trigger: GTGGCTGCTCAGGGAATGCCAAAGCTGGTCCTTGTT...ATGTGTCTTGCTCTTAGGGGGTGGCTCTAAACGTGAGCAACACACTATGTACCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR-3UTR GCA 90 bp GGCCAGTTAAACTCTTACAACAGTATAGAATGTGGCCATAACAGTCCCTATGGGGAGGGTTCAGAACAGTaGAACAGTGCGCTCAGTGTC +
Preference number: 2 (lower is better)
Translates to: GQLNSYNSIECGHNSPYGEGSEQ*NSALSV
Trigger: GACACTGAGCGCACTGTTGCACTGTTCTGAACCCTC...CCCATAGGGACTGTTATGGCCACATTCTATACTGTTGTAAGAGTTTAACTGGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR-3UTR TCA 90 bp CTCCTCAGAGAGAGGTACATAGTGTGTTGCTCACGTTTAGAGCCACCCCCTAAGTCAACTAATTCAAGTTaGCTTTGCCTCTACTCTGTA +
Preference number: 2 (lower is better)
Translates to: LLRERYIVCCSRLEPPPKSTNSS*LCLYSV
Trigger: TACAGAGTAGAGGCAAAGTCAACTTGAATTAGTTGA...CTTAGGGGGTGGCTCTAAACGTGAGCAACACACTATGTACCTCTCTCTGAGGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR-3UTR GCA 90 bp TGTGTATTTAAAAACAATGTATCTGGCGAGCAAATCTACCCCAAAGTCTCCATTACTGCCAGGCAGATCTaGATCCTCCAGGGACTGGCT +
Preference number: 2 (lower is better)
Translates to: CVFKNNVSGEQIYPKVSITARQI*ILQGLA
Trigger: AGCCAGTCCCTGGAGGATGCAGATCTGCCTGGCAGT...AATGGAGACTTTGGGGTAGATTTGCTCGCCAGATACATTGTTTTTAAATACACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR-3UTR TCA 90 bp GTTTCCCCAGGAGAGTTTGGCATTCTTTCGGTATGTGATTTCAGTTTCCCCATTAGAGAGGAGGTACTTTaGATATCAGCTTCCTCCTCA +
Preference number: 2 (lower is better)
Translates to: VSPGEFGILSVCDFSFPIREEVL*ISASSS
Trigger: TGAGGAGGAAGCTGATATTCAAAGTACCTCCTCTCT...AATGGGGAAACTGAAATCACATACCGAAAGAATGCCAAACTCTCCTGGGGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR-3UTR TCA 90 bp ACCCAAGTTTCAAAATGTACATTAAGGAACTTAGGGACTGGCTCAGTGGGTAAAAGCTTTGGCATTCCCTaGGCAGCCACATCTATTTCA +
Preference number: 2 (lower is better)
Translates to: TQVSKCTLRNLGTGSVGKSFGIP*AATSIS
Trigger: TGAAATAGATGTGGCTGCTCAGGGAATGCCAAAGCT...TTTACCCACTGAGCCAGTCCCTAAGTTCCTTAATGTACATTTTGAAACTTGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR-3UTR CCA 90 bp TGTGTATTTAAAAACAATGTATCTGGCGAGCAAATCTACCCCAAAGTCTCCATTAACAAGGACCAGCTTTaGCATTCCCTGAGCAGCCAC +
Preference number: 2 (lower is better)
Translates to: CVFKNNVSGEQIYPKVSINKDQL*HSLSSH
Trigger: GTGGCTGCTCAGGGAATGCCAAAGCTGGTCCTTGTT...AATGGAGACTTTGGGGTAGATTTGCTCGCCAGATACATTGTTTTTAAATACACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR-3UTR TCA 90 bp TCTGTAGCTTGTCACACTTCAACTACAGAAGGTAACTGTCACCATGAGCTAAGTGCACAGGATATATTTTaGCTCCTTCTTTATCCCACA +
Preference number: 2 (lower is better)
Translates to: SVACHTSTTEGNCHHELSAQDIF*LLLYPT
Trigger: TGTGGGATAAAGAAGGAGTCAAAATATATCCTGTGC...ACTTAGCTCATGGTGACAGTTACCTTCTGTAGTTGAAGTGTGACAAGCTACAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR-3UTR TCA 90 bp ACCCAAGTTTCAAAATGTACATTAAGGAACTTAGGGACTGGCTCAGTGGGTAAACTGCTGCAAAGACAGTaGCTGAGCAAAGTTTTGTTT +
Preference number: 2 (lower is better)
Translates to: TQVSKCTLRNLGTGSVGKLLQRQ*LSKVLF
Trigger: AAACAAAACTTTGCTCAGTCACTGTCTTTGCAGCAG...TTTACCCACTGAGCCAGTCCCTAAGTTCCTTAATGTACATTTTGAAACTTGGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR-3UTR CCA 90 bp TGTGTATTTAAAAACAATGTATCTGGCGAGCAAATCTACCCCAAAGTCTCCATTTGTCAGTGTAAGCAGTaGTCTTCCATACTCCAAGGG +
Preference number: 2 (lower is better)
Translates to: CVFKNNVSGEQIYPKVSICQCKQ*SSILQG
Trigger: CCCTTGGAGTATGGAAGACCACTGCTTACACTGACA...AATGGAGACTTTGGGGTAGATTTGCTCGCCAGATACATTGTTTTTAAATACACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR-3UTR TCA 90 bp TGTACAACCCAAGTTTCAAAATGTACATTAAGGAACTTAGGGACTGGCTCAGTGGCACAGGATATATTTTaGCTCCTTCTTTATCCCACA +
Preference number: 2 (lower is better)
Translates to: CTTQVSKCTLRNLGTGSVAQDIF*LLLYPT
Trigger: TGTGGGATAAAGAAGGAGTCAAAATATATCCTGTGC...CACTGAGCCAGTCCCTAAGTTCCTTAATGTACATTTTGAAACTTGGGTTGTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR-3UTR GCA 90 bp TGTACAACCCAAGTTTCAAAATGTACATTAAGGAACTTAGGGACTGGCTCAGTGAAACTTAGATCTAAGTaGAATTCCAGAACCCAAATG +
Preference number: 2 (lower is better)
Translates to: CTTQVSKCTLRNLGTGSVKLRSK*NSRTQM
Trigger: CATTTGGGTTCTGGAATTGCACTTAGATCTAAGTTT...CACTGAGCCAGTCCCTAAGTTCCTTAATGTACATTTTGAAACTTGGGTTGTACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR-3UTR CAA 90 bp ACAGGACAGAGAGTGACATACTTGAAATGTTTCCCCAGGAGAGTTTGGCATTCTGAGGAAGGCACCTCATaGCTACTGAGTGGAAACAAC +
Preference number: 3 (lower is better)
Translates to: TGQRVTYLKCFPRRVWHSEEGTS*LLSGNN
Trigger: GTTGTTTCCACTCAGTAGCAATGAGGTGCCTTCCTC...AGAATGCCAAACTCTCCTGGGGAAACATTTCAAGTATGTCACTCTCTGTCCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR CCA 72 bp AGACAAGACGTAGCAAAAGCTTGTCAGTGTAAGCAGTaGTCTTCCATACTCCAAGGGAGGGTTCAGAACAGT +
Preference number: 3 (lower is better)
Translates to: RQDVAKACQCKQ*SSILQGRVQNS
Trigger: ACTGTTCTGAACCCTCCCTTGGAGTATGGAAGACCACTGCTTACACTGACAAGCTTTTGCTACGTCTTGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR-3UTR CAA 90 bp CCAAATGTTCACAGAACCCAAATGCAAATAAATAATAGACTCACTGCCAGGCAGAAACAAGGACCAGCTTaGGCATTCCCTGAGCAGCCA +
Preference number: 3 (lower is better)
Translates to: PNVHRTQMQINNRLTARQKQGPA*AFPEQP
Trigger: TGGCTGCTCAGGGAATGCCAAAGCTGGTCCTTGTTT...CTGCCTGGCAGTGAGTCTATTATTTATTTGCATTTGGGTTCTGTGAACATTTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR-3UTR CAA 90 bp TGTACAACCCAAGTTTCAAAATGTACATTAAGGAACTTAGGGACTGGCTCAGTGAAACAAGGACCAGCTTaGGCATTCCCTGAGCAGCCA +
Preference number: 3 (lower is better)
Translates to: CTTQVSKCTLRNLGTGSVKQGPA*AFPEQP
Trigger: TGGCTGCTCAGGGAATGCCAAAGCTGGTCCTTGTTT...CACTGAGCCAGTCCCTAAGTTCCTTAATGTACATTTTGAAACTTGGGTTGTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR-3UTR CAA 90 bp CTCCTCAGAGAGAGGTACATAGTGTGTTGCTCACGTTTAGAGCCACCCCCTAAGCCAGCAGTTAGAAATTaGAAAAGCACTAGATGCTTA +
Preference number: 3 (lower is better)
Translates to: LLRERYIVCCSRLEPPPKPAVRN*KSTRCL
Trigger: TAAGCATCTAGTGCTTTTCAAATTTCTAACTGCTGG...CTTAGGGGGTGGCTCTAAACGTGAGCAACACACTATGTACCTCTCTCTGAGGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR TCA 72 bp ACTGAGTTTCAGAAAGCATCTGAATTCTCAGCGGCATaGACCCACAGGCCACAAAGACAAGACGTAGCAAAA +
Preference number: 3 (lower is better)
Translates to: TEFQKASEFSAA*THRPQRQDVAK
Trigger: TTTTGCTACGTCTTGTCTTTGTGGCCTGTGGGTTCATGCCGCTGAGAATTCAGATGCTTTCTGAAACTCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR-3UTR CAA 90 bp TGTACAACCCAAGTTTCAAAATGTACATTAAGGAACTTAGGGACTGGCTCAGTGGAGGAAGGCACCTCATaGCTACTGAGTGGAAACAAC +
Preference number: 3 (lower is better)
Translates to: CTTQVSKCTLRNLGTGSVEEGTS*LLSGNN
Trigger: GTTGTTTCCACTCAGTAGCAATGAGGTGCCTTCCTC...CACTGAGCCAGTCCCTAAGTTCCTTAATGTACATTTTGAAACTTGGGTTGTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR-3UTR CAA 90 bp TCTGTAGCTTGTCACACTTCAACTACAGAAGGTAACTGTCACCATGAGCTAAGTAGCACAGGATATATTTaGACTCCTTCTTTATCCCAC +
Preference number: 3 (lower is better)
Translates to: SVACHTSTTEGNCHHELSSTGYI*TPSLSH
Trigger: GTGGGATAAAGAAGGAGTCAAAATATATCCTGTGCT...ACTTAGCTCATGGTGACAGTTACCTTCTGTAGTTGAAGTGTGACAAGCTACAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp GGCCAGTTAAACTCTTACAACAGTATAGAATGTGGCCATAACAGTCCCTATGGGGGGGCTGGCAAGGGCTaGGGCGCCACAGACTCCACG +
Preference number: 4 (lower is better)
Translates to: GQLNSYNSIECGHNSPYGGAGKG*GATDST
Trigger: CGTGGAGTCTGTGGCGCCCCAGCCCTTGCCAGCCCC...CCCATAGGGACTGTTATGGCCACATTCTATACTGTTGTAAGAGTTTAACTGGCC
56% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp CCAAATGTTCACAGAACCCAAATGCAAATAAATAATAGACTCACTGCCAGGCAGGGGGCTGGCAAGGGCTaGGGCGCCACAGACTCCACG +
Preference number: 4 (lower is better)
Translates to: PNVHRTQMQINNRLTARQGAGKG*GATDST
Trigger: CGTGGAGTCTGTGGCGCCCCAGCCCTTGCCAGCCCC...CTGCCTGGCAGTGAGTCTATTATTTATTTGCATTTGGGTTCTGTGAACATTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp AAGCTTGTCAGTGTAAGCAGTGGTCTTCCATACTCCAAGGGAGGGTTCAGAACAAATGCCAGCCGCCTGTaGAAGGAGGGTGCTCGGTTG +
Preference number: 4 (lower is better)
Translates to: KLVSVSSGLPYSKGGFRTNASRL*KEGARL
Trigger: CAACCGAGCACCCTCCTTCCACAGGCGGCTGGCATT...TGTTCTGAACCCTCCCTTGGAGTATGGAAGACCACTGCTTACACTGACAAGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp CAAGGACCAGCTTTGGCATTCCCTGAGCAGCCACATCTATTTCAAGATAGCATTCCGGCGTTTTCACGGTaGCTATCTGAGGAGCGGGCA +
Preference number: 4 (lower is better)
Translates to: QGPALAFPEQPHLFQDSIPAFSR*LSEERA
Trigger: TGCCCGCTCCTCAGATAGTCACCGTGAAAACGCCGG...AATGCTATCTTGAAATAGATGTGGCTGCTCAGGGAATGCCAAAGCTGGTCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp CTCCTCAGAGAGAGGTACATAGTGTGTTGCTCACGTTTAGAGCCACCCCCTAAGAGTTCTGGGTGCTGTTaGTCCAGACACAAGGACTGG +
Preference number: 4 (lower is better)
Translates to: LLRERYIVCCSRLEPPPKSSGCC*SRHKDW
Trigger: CCAGTCCTTGTGTCTGGAGCAACAGCACCCAGAACT...CTTAGGGGGTGGCTCTAAACGTGAGCAACACACTATGTACCTCTCTCTGAGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp CAAGGACCAGCTTTGGCATTCCCTGAGCAGCCACATCTATTTCAAGATAGCATTAATGCCAGCCGCCTGTaGAAGGAGGGTGCTCGGTTG +
Preference number: 4 (lower is better)
Translates to: QGPALAFPEQPHLFQDSINASRL*KEGARL
Trigger: CAACCGAGCACCCTCCTTCCACAGGCGGCTGGCATT...AATGCTATCTTGAAATAGATGTGGCTGCTCAGGGAATGCCAAAGCTGGTCCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp ACAGGACAGAGAGTGACATACTTGAAATGTTTCCCCAGGAGAGTTTGGCATTCTCCGGCGTTTTCACGGTaGCTATCTGAGGAGCGGGCA +
Preference number: 4 (lower is better)
Translates to: TGQRVTYLKCFPRRVWHSPAFSR*LSEERA
Trigger: TGCCCGCTCCTCAGATAGTCACCGTGAAAACGCCGG...AGAATGCCAAACTCTCCTGGGGAAACATTTCAAGTATGTCACTCTCTGTCCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp CTCCTCAGAGAGAGGTACATAGTGTGTTGCTCACGTTTAGAGCCACCCCCTAAGCGATCTGGACTGGAGTaGCAATGGCAGGTTTATCAG +
Preference number: 4 (lower is better)
Translates to: LLRERYIVCCSRLEPPPKRSGLE*QWQVYQ
Trigger: CTGATAAACCTGCCATTGGCACTCCAGTCCAGATCG...CTTAGGGGGTGGCTCTAAACGTGAGCAACACACTATGTACCTCTCTCTGAGGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp CCAAATGTTCACAGAACCCAAATGCAAATAAATAATAGACTCACTGCCAGGCAGTTCACGGTGACTATCTaGGGAGCGGGCAGCCTAGGG +
Preference number: 4 (lower is better)
Translates to: PNVHRTQMQINNRLTARQFTVTI*GAGSLG
Trigger: CCCTAGGCTGCCCGCTCCTCAGATAGTCACCGTGAA...CTGCCTGGCAGTGAGTCTATTATTTATTTGCATTTGGGTTCTGTGAACATTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp AGTTTCAGAAAGCATCTGAATTCTCAGCGGCATGAACCCACAGGCCACAAAGACAGTCTGAGCAGCTACTaGAGTCTCAGCTTTGAGACG +
Preference number: 4 (lower is better)
Translates to: SFRKHLNSQRHEPTGHKDSLSSY*SLSFET
Trigger: CGTCTCAAAGCTGAGACTTCAGTAGCTGCTCAGACT...GTCTTTGTGGCCTGTGGGTTCATGCCGCTGAGAATTCAGATGCTTTCTGAAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp ACCCAAGTTTCAAAATGTACATTAAGGAACTTAGGGACTGGCTCAGTGGGTAAAGGGACGAGGTGCGGCTaGGGTGCAGACTTGAGTTCA +
Preference number: 4 (lower is better)
Translates to: TQVSKCTLRNLGTGSVGKGTRCG*GADLSS
Trigger: TGAACTCAAGTCTGCACCTCAGCCGCACCTCGTCCC...TTTACCCACTGAGCCAGTCCCTAAGTTCCTTAATGTACATTTTGAAACTTGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp CAAGGACCAGCTTTGGCATTCCCTGAGCAGCCACATCTATTTCAAGATAGCATTGGATTCAGGGTCTGCTaGACAGACAGAGTTCTGGGT +
Preference number: 4 (lower is better)
Translates to: QGPALAFPEQPHLFQDSIGFRVC*TDRVLG
Trigger: ACCCAGAACTCTGTCTGTTCAGCAGACCCTGAATCC...AATGCTATCTTGAAATAGATGTGGCTGCTCAGGGAATGCCAAAGCTGGTCCTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp AAGAACAGGACAGAGAGTGACATACTTGAAATGTTTCCCCAGGAGAGTTTGGCAACTGGATTCTCAGGCTaGAGGGACACTGCTGCCACT +
Preference number: 4 (lower is better)
Translates to: KNRTESDILEMFPQESLATGFSG*RDTAAT
Trigger: AGTGGCAGCAGTGTCCCTTCAGCCTGAGAATCCAGT...TGCCAAACTCTCCTGGGGAAACATTTCAAGTATGTCACTCTCTGTCCTGTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp GGCCAGTTAAACTCTTACAACAGTATAGAATGTGGCCATAACAGTCCCTATGGGACTGGATTCTCAGGCTaGAGGGACACTGCTGCCACT +
Preference number: 4 (lower is better)
Translates to: GQLNSYNSIECGHNSPYGTGFSG*RDTAAT
Trigger: AGTGGCAGCAGTGTCCCTTCAGCCTGAGAATCCAGT...CCCATAGGGACTGTTATGGCCACATTCTATACTGTTGTAAGAGTTTAACTGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp AGGTACATAGTGTGTTGCTCACGTTTAGAGCCACCCCCTAAGAGCAAGACACATGTTCCTGGAGGAAGCTaGAAATTAGCCGGTAGTTGG +
Preference number: 4 (lower is better)
Translates to: RYIVCCSRLEPPPKSKTHVPGGS*KLAGSW
Trigger: CCAACTACCGGCTAATTTGCAGCTTCCTCCAGGAAC...ATGTGTCTTGCTCTTAGGGGGTGGCTCTAAACGTGAGCAACACACTATGTACCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp AGGTACATAGTGTGTTGCTCACGTTTAGAGCCACCCCCTAAGAGCAAGACACATTCTGCATCCAAAAGCTaGTCCACCAGCCTCTTCACA +
Preference number: 4 (lower is better)
Translates to: RYIVCCSRLEPPPKSKTHSASKS*STSLFT
Trigger: TGTGAAGAGGCTGGTGGAGCAGCTTTTGGATGCAGA...ATGTGTCTTGCTCTTAGGGGGTGGCTCTAAACGTGAGCAACACACTATGTACCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp AGGTACATAGTGTGTTGCTCACGTTTAGAGCCACCCCCTAAGAGCAAGACACATAGACAGAGTTCTGGGTaGTGTTGCTCCAGACACAAG +
Preference number: 4 (lower is better)
Translates to: RYIVCCSRLEPPPKSKTHRQSSG*CCSRHK
Trigger: CTTGTGTCTGGAGCAACAGCACCCAGAACTCTGTCT...ATGTGTCTTGCTCTTAGGGGGTGGCTCTAAACGTGAGCAACACACTATGTACCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp AGTTTCAGAAAGCATCTGAATTCTCAGCGGCATGAACCCACAGGCCACAAAGACAGACAGAGTTCTGGGTaGTGTTGCTCCAGACACAAG +
Preference number: 4 (lower is better)
Translates to: SFRKHLNSQRHEPTGHKDRQSSG*CCSRHK
Trigger: CTTGTGTCTGGAGCAACAGCACCCAGAACTCTGTCT...GTCTTTGTGGCCTGTGGGTTCATGCCGCTGAGAATTCAGATGCTTTCTGAAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp AGTTTCAGAAAGCATCTGAATTCTCAGCGGCATGAACCCACAGGCCACAAAGACCACAACTCCAGTGTTTaGTACTCCTGGACCAGCAAG +
Preference number: 4 (lower is better)
Translates to: SFRKHLNSQRHEPTGHKDHNSSV*YSWTSK
Trigger: CTTGCTGGTCCAGGAGTAGCAAACACTGGAGTTGTG...GTCTTTGTGGCCTGTGGGTTCATGCCGCTGAGAATTCAGATGCTTTCTGAAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp AGTTTCAGAAAGCATCTGAATTCTCAGCGGCATGAACCCACAGGCCACAAAGACAGCCAGTGTTACTGCTaGCCCAGACACAACTGGATT +
Preference number: 4 (lower is better)
Translates to: SFRKHLNSQRHEPTGHKDSQCYC*PRHNWI
Trigger: AATCCAGTTGTGTCTGGGGCAGCAGTAACACTGGCT...GTCTTTGTGGCCTGTGGGTTCATGCCGCTGAGAATTCAGATGCTTTCTGAAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp AGGTACATAGTGTGTTGCTCACGTTTAGAGCCACCCCCTAAGAGCAAGACACATAGCCAGTGTTACTGCTaGCCCAGACACAACTGGATT +
Preference number: 4 (lower is better)
Translates to: RYIVCCSRLEPPPKSKTHSQCYC*PRHNWI
Trigger: AATCCAGTTGTGTCTGGGGCAGCAGTAACACTGGCT...ATGTGTCTTGCTCTTAGGGGGTGGCTCTAAACGTGAGCAACACACTATGTACCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp AGTTTCAGAAAGCATCTGAATTCTCAGCGGCATGAACCCACAGGCCACAAAGACCGATCTGGACTGGAGTaGCAATGGCAGGTTTATCAG +
Preference number: 4 (lower is better)
Translates to: SFRKHLNSQRHEPTGHKDRSGLE*QWQVYQ
Trigger: CTGATAAACCTGCCATTGGCACTCCAGTCCAGATCG...GTCTTTGTGGCCTGTGGGTTCATGCCGCTGAGAATTCAGATGCTTTCTGAAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp GGCCAGTTAAACTCTTACAACAGTATAGAATGTGGCCATAACAGTCCCTATGGGGGATTCAGGGTCTGCTaGACAGACAGAGTTCTGGGT +
Preference number: 4 (lower is better)
Translates to: GQLNSYNSIECGHNSPYGGFRVC*TDRVLG
Trigger: ACCCAGAACTCTGTCTGTTCAGCAGACCCTGAATCC...CCCATAGGGACTGTTATGGCCACATTCTATACTGTTGTAAGAGTTTAACTGGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp GTTTCCCCAGGAGAGTTTGGCATTCTTTCGGTATGTGATTTCAGTTTCCCCATTGCTGGGGCAACAGAATaGAGTGTCACAACTCCAGTG +
Preference number: 4 (lower is better)
Translates to: VSPGEFGILSVCDFSFPIAGATE*SVTTPV
Trigger: CACTGGAGTTGTGACACTGCATTCTGTTGCCCCAGC...AATGGGGAAACTGAAATCACATACCGAAAGAATGCCAAACTCTCCTGGGGAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp AAGCTTGTCAGTGTAAGCAGTGGTCTTCCATACTCCAAGGGAGGGTTCAGAACACTGCTTCCTGAAGGCTaGTGTACAACTAGTTGCTTG +
Preference number: 4 (lower is better)
Translates to: KLVSVSSGLPYSKGGFRTLLPEG*CTTSCL
Trigger: CAAGCAACTAGTTGTACAGCAGCCTTCAGGAAGCAG...TGTTCTGAACCCTCCCTTGGAGTATGGAAGACCACTGCTTACACTGACAAGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp CTCCTCAGAGAGAGGTACATAGTGTGTTGCTCACGTTTAGAGCCACCCCCTAAGGAGTTATGTTACTTGTaGTCTTGGCTCCTGTTACAG +
Preference number: 4 (lower is better)
Translates to: LLRERYIVCCSRLEPPPKELCYL*SWLLLQ
Trigger: CTGTAACAGGAGCCAAGACCACAAGTAACATAACTC...CTTAGGGGGTGGCTCTAAACGTGAGCAACACACTATGTACCTCTCTCTGAGGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp GAAGCCAGAGAGTCAGCAACCTCACTGTATAATTATCAGCTATGTAATTCTGGCGTCCTGAGGAAGTACTaGAGGCAGTGGTTGCCACAG +
Preference number: 4 (lower is better)
Translates to: EARESATSLYNYQLCNSGVLRKY*RQWLPQ
Trigger: CTGTGGCAACCACTGCCTCCAGTACTTCCTCAGGAC...GCCAGAATTACATAGCTGATAATTATACAGTGAGGTTGCTGACTCTCTGGCTTC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp GTTTCCCCAGGAGAGTTTGGCATTCTTTCGGTATGTGATTTCAGTTTCCCCATTAGTCTGAGCAGCTACTaGAGTCTCAGCTTTGAGACG +
Preference number: 4 (lower is better)
Translates to: VSPGEFGILSVCDFSFPISLSSY*SLSFET
Trigger: CGTCTCAAAGCTGAGACTTCAGTAGCTGCTCAGACT...AATGGGGAAACTGAAATCACATACCGAAAGAATGCCAAACTCTCCTGGGGAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp AAGCTTGTCAGTGTAAGCAGTGGTCTTCCATACTCCAAGGGAGGGTTCAGAACAGCTGAGGTGCAGACTTaGGTTCAATATACAGTTTCC +
Preference number: 4 (lower is better)
Translates to: KLVSVSSGLPYSKGGFRTAEVQT*VQYTVS
Trigger: GGAAACTGTATATTGAACTCAAGTCTGCACCTCAGC...TGTTCTGAACCCTCCCTTGGAGTATGGAAGACCACTGCTTACACTGACAAGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp TGTGTATTTAAAAACAATGTATCTGGCGAGCAAATCTACCCCAAAGTCTCCATTGGGACGAGGTGCGGCTaGGGTGCAGACTTGAGTTCA +
Preference number: 4 (lower is better)
Translates to: CVFKNNVSGEQIYPKVSIGTRCG*GADLSS
Trigger: TGAACTCAAGTCTGCACCTCAGCCGCACCTCGTCCC...AATGGAGACTTTGGGGTAGATTTGCTCGCCAGATACATTGTTTTTAAATACACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp AGTTTCAGAAAGCATCTGAATTCTCAGCGGCATGAACCCACAGGCCACAAAGACGTACAACTAGTTGCTTaGCTTTGGCTGTCTGTGGAA +
Preference number: 4 (lower is better)
Translates to: SFRKHLNSQRHEPTGHKDVQLVA*LWLSVE
Trigger: TTCCACAGACAGCCAAAGTCAAGCAACTAGTTGTAC...GTCTTTGTGGCCTGTGGGTTCATGCCGCTGAGAATTCAGATGCTTTCTGAAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp AGTTTCAGAAAGCATCTGAATTCTCAGCGGCATGAACCCACAGGCCACAAAGACTGTCATCTTCACCTCTaGAGCATGTTGGTCCATTCT +
Preference number: 4 (lower is better)
Translates to: SFRKHLNSQRHEPTGHKDCHLHL*SMLVHS
Trigger: AGAATGGACCAACATGCTTCAGAGGTGAAGATGACA...GTCTTTGTGGCCTGTGGGTTCATGCCGCTGAGAATTCAGATGCTTTCTGAAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp GGCCAGTTAAACTCTTACAACAGTATAGAATGTGGCCATAACAGTCCCTATGGGCACAACTCCAGTGTTTaGTACTCCTGGACCAGCAAG +
Preference number: 4 (lower is better)
Translates to: GQLNSYNSIECGHNSPYGHNSSV*YSWTSK
Trigger: CTTGCTGGTCCAGGAGTAGCAAACACTGGAGTTGTG...CCCATAGGGACTGTTATGGCCACATTCTATACTGTTGTAAGAGTTTAACTGGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp GAAGCCAGAGAGTCAGCAACCTCACTGTATAATTATCAGCTATGTAATTCTGGCGCTGGGGCAACAGAATaGAGTGTCACAACTCCAGTG +
Preference number: 4 (lower is better)
Translates to: EARESATSLYNYQLCNSGAGATE*SVTTPV
Trigger: CACTGGAGTTGTGACACTGCATTCTGTTGCCCCAGC...GCCAGAATTACATAGCTGATAATTATACAGTGAGGTTGCTGACTCTCTGGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp GACTGGCTGCTAATAGAAACTGCTGCAAAGACAGTGACTGAGCAAAGTTTTGTTTGCCCCAGACACAACTaGATTCTCAGGCTGAAGGGA +
Preference number: 4 (lower is better)
Translates to: DWLLIETAAKTVTEQSFVCPRHN*ILRLKG
Trigger: TCCCTTCAGCCTGAGAATCCAGTTGTGTCTGGGGCA...AACAAAACTTTGCTCAGTCACTGTCTTTGCAGCAGTTTCTATTAGCAGCCAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp CAAGGACCAGCTTTGGCATTCCCTGAGCAGCCACATCTATTTCAAGATAGCATTTTGGACGAAATGGTTTaGTGGCTGTTAGGCTGGAAG +
Preference number: 4 (lower is better)
Translates to: QGPALAFPEQPHLFQDSILDEMV*WLLGWK
Trigger: CTTCCAGCCTAACAGCCACCAAACCATTTCGTCCAA...AATGCTATCTTGAAATAGATGTGGCTGCTCAGGGAATGCCAAAGCTGGTCCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp AGTCAGCAACCTCACTGTATAATTATCAGCTATGTAATTCTGGCTCAACTAATTTTCACGGTGACTATCTaGGGAGCGGGCAGCCTAGGG +
Preference number: 4 (lower is better)
Translates to: SQQPHCIIISYVILAQLIFTVTI*GAGSLG
Trigger: CCCTAGGCTGCCCGCTCCTCAGATAGTCACCGTGAA...AATTAGTTGAGCCAGAATTACATAGCTGATAATTATACAGTGAGGTTGCTGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp GACTGGCTGCTAATAGAAACTGCTGCAAAGACAGTGACTGAGCAAAGTTTTGTTCTGAGTGCTCAATGGTaGGGAATGGGAAATGGAGGT +
Preference number: 4 (lower is better)
Translates to: DWLLIETAAKTVTEQSFVLSAQW*GMGNGG
Trigger: ACCTCCATTTCCCATTCCTCACCATTGAGCACTCAG...AACAAAACTTTGCTCAGTCACTGTCTTTGCAGCAGTTTCTATTAGCAGCCAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp GACTGGCTGCTAATAGAAACTGCTGCAAAGACAGTGACTGAGCAAAGTTTTGTTGTTCCTGGAGGAAGCTaGAAATTAGCCGGTAGTTGG +
Preference number: 4 (lower is better)
Translates to: DWLLIETAAKTVTEQSFVVPGGS*KLAGSW
Trigger: CCAACTACCGGCTAATTTGCAGCTTCCTCCAGGAAC...AACAAAACTTTGCTCAGTCACTGTCTTTGCAGCAGTTTCTATTAGCAGCCAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp GAAGCCAGAGAGTCAGCAACCTCACTGTATAATTATCAGCTATGTAATTCTGGCACTGGAGGCAGTGGTTaGCACAGTAGTTCCTATCTG +
Preference number: 4 (lower is better)
Translates to: EARESATSLYNYQLCNSGTGGSG*HSSSYL
Trigger: CAGATAGGAACTACTGTGGCAACCACTGCCTCCAGT...GCCAGAATTACATAGCTGATAATTATACAGTGAGGTTGCTGACTCTCTGGCTTC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp GACTGGCTGCTAATAGAAACTGCTGCAAAGACAGTGACTGAGCAAAGTTTTGTTTCTGCATCCAAAAGCTaGTCCACCAGCCTCTTCACA +
Preference number: 4 (lower is better)
Translates to: DWLLIETAAKTVTEQSFVSASKS*STSLFT
Trigger: TGTGAAGAGGCTGGTGGAGCAGCTTTTGGATGCAGA...AACAAAACTTTGCTCAGTCACTGTCTTTGCAGCAGTTTCTATTAGCAGCCAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp CTCCTCAGAGAGAGGTACATAGTGTGTTGCTCACGTTTAGAGCCACCCCCTAAGCCTAGTAAACTCTTCTaGTTCAATTTCTGCATCCAA +
Preference number: 4 (lower is better)
Translates to: LLRERYIVCCSRLEPPPKPSKLF*FNFCIQ
Trigger: TTGGATGCAGAAATTGAAGCAGAAGAGTTTACTAGG...CTTAGGGGGTGGCTCTAAACGTGAGCAACACACTATGTACCTCTCTCTGAGGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp GGCCAGTTAAACTCTTACAACAGTATAGAATGTGGCCATAACAGTCCCTATGGGGAGGTGCGGCTGAGGTaGAGACTTGAGTTCAATATA +
Preference number: 4 (lower is better)
Translates to: GQLNSYNSIECGHNSPYGEVRLR*RLEFNI
Trigger: TATATTGAACTCAAGTCTGCACCTCAGCCGCACCTC...CCCATAGGGACTGTTATGGCCACATTCTATACTGTTGTAAGAGTTTAACTGGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp AAGAACAGGACAGAGAGTGACATACTTGAAATGTTTCCCCAGGAGAGTTTGGCACTGCTTCCTGAAGGCTaGTGTACAACTAGTTGCTTG +
Preference number: 4 (lower is better)
Translates to: KNRTESDILEMFPQESLALLPEG*CTTSCL
Trigger: CAAGCAACTAGTTGTACAGCAGCCTTCAGGAAGCAG...TGCCAAACTCTCCTGGGGAAACATTTCAAGTATGTCACTCTCTGTCCTGTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp AGGTACATAGTGTGTTGCTCACGTTTAGAGCCACCCCCTAAGAGCAAGACACATGAGTTATGTTACTTGTaGTCTTGGCTCCTGTTACAG +
Preference number: 4 (lower is better)
Translates to: RYIVCCSRLEPPPKSKTHELCYL*SWLLLQ
Trigger: CTGTAACAGGAGCCAAGACCACAAGTAACATAACTC...ATGTGTCTTGCTCTTAGGGGGTGGCTCTAAACGTGAGCAACACACTATGTACCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp CAAGGACCAGCTTTGGCATTCCCTGAGCAGCCACATCTATTTCAAGATAGCATTTGTTTGAGTGTTTGCTaGTACTGCTGGTCTTGGAGT +
Preference number: 4 (lower is better)
Translates to: QGPALAFPEQPHLFQDSICLSVC*YCWSWS
Trigger: ACTCCAAGACCAGCAGTACCAGCAAACACTCAAACA...AATGCTATCTTGAAATAGATGTGGCTGCTCAGGGAATGCCAAAGCTGGTCCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp AAGCTTGTCAGTGTAAGCAGTGGTCTTCCATACTCCAAGGGAGGGTTCAGAACATTGATGACTTCAGGGTaGATACAGTATTCACCAGCT +
Preference number: 4 (lower is better)
Translates to: KLVSVSSGLPYSKGGFRTLMTSG*IQYSPA
Trigger: AGCTGGTGAATACTGTATCCACCCTGAAGTCATCAA...TGTTCTGAACCCTCCCTTGGAGTATGGAAGACCACTGCTTACACTGACAAGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp ACCCAAGTTTCAAAATGTACATTAAGGAACTTAGGGACTGGCTCAGTGGGTAAATGCCCCAGACACAACTaGATTCTCAGGCTGAAGGGA +
Preference number: 4 (lower is better)
Translates to: TQVSKCTLRNLGTGSVGKCPRHN*ILRLKG
Trigger: TCCCTTCAGCCTGAGAATCCAGTTGTGTCTGGGGCA...TTTACCCACTGAGCCAGTCCCTAAGTTCCTTAATGTACATTTTGAAACTTGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp GAAGCCAGAGAGTCAGCAACCTCACTGTATAATTATCAGCTATGTAATTCTGGCGGACTGGAGTGCCAATaGCAGGTTTATCAGCTTTGG +
Preference number: 4 (lower is better)
Translates to: EARESATSLYNYQLCNSGGLECQ*QVYQLW
Trigger: CCAAAGCTGATAAACCTGCCATTGGCACTCCAGTCC...GCCAGAATTACATAGCTGATAATTATACAGTGAGGTTGCTGACTCTCTGGCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp AACACTAGGAGACAGGCTCAGCACAGGATATATTTTGACTCCTTCTTTATCCCAGGACTGGAGTGCCAATaGCAGGTTTATCAGCTTTGG +
Preference number: 4 (lower is better)
Translates to: NTRRQAQHRIYFDSFFIPGLECQ*QVYQLW
Trigger: CCAAAGCTGATAAACCTGCCATTGGCACTCCAGTCC...TGGGATAAAGAAGGAGTCAAAATATATCCTGTGCTGAGCCTGTCTCCTAGTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp GGCCAGTTAAACTCTTACAACAGTATAGAATGTGGCCATAACAGTCCCTATGGGTGTAACGATCTGGACTaGAGTGCCAATGGCAGGTTT +
Preference number: 4 (lower is better)
Translates to: GQLNSYNSIECGHNSPYGCNDLD*SANGRF
Trigger: AAACCTGCCATTGGCACTCCAGTCCAGATCGTTACA...CCCATAGGGACTGTTATGGCCACATTCTATACTGTTGTAAGAGTTTAACTGGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp CAAGGACCAGCTTTGGCATTCCCTGAGCAGCCACATCTATTTCAAGATAGCATTGTGAGGAATGGGAAATaGAGGTCACATGATTCACAC +
Preference number: 4 (lower is better)
Translates to: QGPALAFPEQPHLFQDSIVRNGK*RSHDSH
Trigger: GTGTGAATCATGTGACCTCCATTTCCCATTCCTCAC...AATGCTATCTTGAAATAGATGTGGCTGCTCAGGGAATGCCAAAGCTGGTCCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp CAAGGACCAGCTTTGGCATTCCCTGAGCAGCCACATCTATTTCAAGATAGCATTGACCACTGTTACTTTTaGTCAAAACTGTTCCTGGAG +
Preference number: 4 (lower is better)
Translates to: QGPALAFPEQPHLFQDSIDHCYF*SKLFLE
Trigger: CTCCAGGAACAGTTTTGATCAAAAGTAACAGTGGTC...AATGCTATCTTGAAATAGATGTGGCTGCTCAGGGAATGCCAAAGCTGGTCCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp ACAGGACAGAGAGTGACATACTTGAAATGTTTCCCCAGGAGAGTTTGGCATTCTGTACAACTAGTTGCTTaGCTTTGGCTGTCTGTGGAA +
Preference number: 4 (lower is better)
Translates to: TGQRVTYLKCFPRRVWHSVQLVA*LWLSVE
Trigger: TTCCACAGACAGCCAAAGTCAAGCAACTAGTTGTAC...AGAATGCCAAACTCTCCTGGGGAAACATTTCAAGTATGTCACTCTCTGTCCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp GTTTCCCCAGGAGAGTTTGGCATTCTTTCGGTATGTGATTTCAGTTTCCCCATTTACTGTTTGAGTGTTTaGTGGTACTGCTGGTCTTGG +
Preference number: 4 (lower is better)
Translates to: VSPGEFGILSVCDFSFPIYCLSV*WYCWSW
Trigger: CCAAGACCAGCAGTACCAGCAAACACTCAAACAGTA...AATGGGGAAACTGAAATCACATACCGAAAGAATGCCAAACTCTCCTGGGGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp AACACTAGGAGACAGGCTCAGCACAGGATATATTTTGACTCCTTCTTTATCCCAGAGGTGCGGCTGAGGTaGAGACTTGAGTTCAATATA +
Preference number: 4 (lower is better)
Translates to: NTRRQAQHRIYFDSFFIPEVRLR*RLEFNI
Trigger: TATATTGAACTCAAGTCTGCACCTCAGCCGCACCTC...TGGGATAAAGAAGGAGTCAAAATATATCCTGTGCTGAGCCTGTCTCCTAGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp GGCCAGTTAAACTCTTACAACAGTATAGAATGTGGCCATAACAGTCCCTATGGGTTGAAGCAAAACAGTTaGAGCTGTCGTACCTCCTGT +
Preference number: 4 (lower is better)
Translates to: GQLNSYNSIECGHNSPYGLKQNS*SCRTSC
Trigger: ACAGGAGGTACGACAGCTGCAACTGTTTTGCTTCAA...CCCATAGGGACTGTTATGGCCACATTCTATACTGTTGTAAGAGTTTAACTGGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp GTTTCCCCAGGAGAGTTTGGCATTCTTTCGGTATGTGATTTCAGTTTCCCCATTTGTTACTTGTGGTCTTaGCTCCTGTTACAGCTTGCT +
Preference number: 4 (lower is better)
Translates to: VSPGEFGILSVCDFSFPICYLWS*LLLQLA
Trigger: AGCAAGCTGTAACAGGAGCCAAGACCACAAGTAACA...AATGGGGAAACTGAAATCACATACCGAAAGAATGCCAAACTCTCCTGGGGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp AACACTAGGAGACAGGCTCAGCACAGGATATATTTTGACTCCTTCTTTATCCCATGTAACGATCTGGACTaGAGTGCCAATGGCAGGTTT +
Preference number: 4 (lower is better)
Translates to: NTRRQAQHRIYFDSFFIPCNDLD*SANGRF
Trigger: AAACCTGCCATTGGCACTCCAGTCCAGATCGTTACA...TGGGATAAAGAAGGAGTCAAAATATATCCTGTGCTGAGCCTGTCTCCTAGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp ACAGGACAGAGAGTGACATACTTGAAATGTTTCCCCAGGAGAGTTTGGCATTCTGTGAGGAATGGGAAATaGAGGTCACATGATTCACAC +
Preference number: 4 (lower is better)
Translates to: TGQRVTYLKCFPRRVWHSVRNGK*RSHDSH
Trigger: GTGTGAATCATGTGACCTCCATTTCCCATTCCTCAC...AGAATGCCAAACTCTCCTGGGGAAACATTTCAAGTATGTCACTCTCTGTCCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp GTTTCCCCAGGAGAGTTTGGCATTCTTTCGGTATGTGATTTCAGTTTCCCCATTCATCACAGCATTTACTaGTGTCTTCTGCCCACAGTT +
Preference number: 4 (lower is better)
Translates to: VSPGEFGILSVCDFSFPIHHSIY*CLLPTV
Trigger: AACTGTGGGCAGAAGACACCAGTAAATGCTGTGATG...AATGGGGAAACTGAAATCACATACCGAAAGAATGCCAAACTCTCCTGGGGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp TCTGTAGCTTGTCACACTTCAACTACAGAAGGTAACTGTCACCATGAGCTAAGTTTAGCATCTCTGTACTaGATCTGGGCAAGCTCCAAC +
Preference number: 4 (lower is better)
Translates to: SVACHTSTTEGNCHHELSLASLY*IWASSN
Trigger: GTTGGAGCTTGCCCAGATCCAGTACAGAGATGCTAA...ACTTAGCTCATGGTGACAGTTACCTTCTGTAGTTGAAGTGTGACAAGCTACAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp GAAGCCAGAGAGTCAGCAACCTCACTGTATAATTATCAGCTATGTAATTCTGGCGCTGAGGTGCAGACTTaGGTTCAATATACAGTTTCC +
Preference number: 4 (lower is better)
Translates to: EARESATSLYNYQLCNSGAEVQT*VQYTVS
Trigger: GGAAACTGTATATTGAACTCAAGTCTGCACCTCAGC...GCCAGAATTACATAGCTGATAATTATACAGTGAGGTTGCTGACTCTCTGGCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp AAGAACAGGACAGAGAGTGACATACTTGAAATGTTTCCCCAGGAGAGTTTGGCATCACACAGTTCTCAATaGAGCTCTGGGAATTTGGAA +
Preference number: 4 (lower is better)
Translates to: KNRTESDILEMFPQESLASHSSQ*SSGNLE
Trigger: TTCCAAATTCCCAGAGCTTCATTGAGAACTGTGTGA...TGCCAAACTCTCCTGGGGAAACATTTCAAGTATGTCACTCTCTGTCCTGTTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp GAAGCCAGAGAGTCAGCAACCTCACTGTATAATTATCAGCTATGTAATTCTGGCTACTGTTTGAGTGTTTaGTGGTACTGCTGGTCTTGG +
Preference number: 4 (lower is better)
Translates to: EARESATSLYNYQLCNSGYCLSV*WYCWSW
Trigger: CCAAGACCAGCAGTACCAGCAAACACTCAAACAGTA...GCCAGAATTACATAGCTGATAATTATACAGTGAGGTTGCTGACTCTCTGGCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp GACTGGCTGCTAATAGAAACTGCTGCAAAGACAGTGACTGAGCAAAGTTTTGTTTTGAAGCAAAACAGTTaGAGCTGTCGTACCTCCTGT +
Preference number: 4 (lower is better)
Translates to: DWLLIETAAKTVTEQSFVLKQNS*SCRTSC
Trigger: ACAGGAGGTACGACAGCTGCAACTGTTTTGCTTCAA...AACAAAACTTTGCTCAGTCACTGTCTTTGCAGCAGTTTCTATTAGCAGCCAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp AAGAACAGGACAGAGAGTGACATACTTGAAATGTTTCCCCAGGAGAGTTTGGCAGATCAAAACTGTTCCTaGAGGAAGCTGCAAATTAGC +
Preference number: 4 (lower is better)
Translates to: KNRTESDILEMFPQESLADQNCS*RKLQIS
Trigger: GCTAATTTGCAGCTTCCTCCAGGAACAGTTTTGATC...TGCCAAACTCTCCTGGGGAAACATTTCAAGTATGTCACTCTCTGTCCTGTTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp GGCCAGTTAAACTCTTACAACAGTATAGAATGTGGCCATAACAGTCCCTATGGGTTGATGACTTCAGGGTaGATACAGTATTCACCAGCT +
Preference number: 4 (lower is better)
Translates to: GQLNSYNSIECGHNSPYGLMTSG*IQYSPA
Trigger: AGCTGGTGAATACTGTATCCACCCTGAAGTCATCAA...CCCATAGGGACTGTTATGGCCACATTCTATACTGTTGTAAGAGTTTAACTGGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
3UTR CAA 72 bp GAGAGTGACATACTTGAAATGTTTCCCCAGGAGAGTTaGGCATTCTTTCGGTATGTGATTTCAGTTTCCCCA +
Preference number: 4 (lower is better)
Translates to: ESDILEMFPQES*AFFRYVISVSP
Trigger: TGGGGAAACTGAAATCACATACCGAAAGAATGCCAAACTCTCCTGGGGAAACATTTCAAGTATGTCACTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp GACTGGCTGCTAATAGAAACTGCTGCAAAGACAGTGACTGAGCAAAGTTTTGTTCAGATCTTTACTGTTTaGGTGTTTGCTGGTACTGCT +
Preference number: 4 (lower is better)
Translates to: DWLLIETAAKTVTEQSFVQIFTV*VFAGTA
Trigger: AGCAGTACCAGCAAACACTCAAACAGTAAAGATCTG...AACAAAACTTTGCTCAGTCACTGTCTTTGCAGCAGTTTCTATTAGCAGCCAGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp TGTGTATTTAAAAACAATGTATCTGGCGAGCAAATCTACCCCAAAGTCTCCATTCTGAGTGCTCAATGGTaGGGAATGGGAAATGGAGGT +
Preference number: 4 (lower is better)
Translates to: CVFKNNVSGEQIYPKVSILSAQW*GMGNGG
Trigger: ACCTCCATTTCCCATTCCTCACCATTGAGCACTCAG...AATGGAGACTTTGGGGTAGATTTGCTCGCCAGATACATTGTTTTTAAATACACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp TGTACAACCCAAGTTTCAAAATGTACATTAAGGAACTTAGGGACTGGCTCAGTGTGTCATCTTCACCTCTaGAGCATGTTGGTCCATTCT +
Preference number: 4 (lower is better)
Translates to: CTTQVSKCTLRNLGTGSVCHLHL*SMLVHS
Trigger: AGAATGGACCAACATGCTTCAGAGGTGAAGATGACA...CACTGAGCCAGTCCCTAAGTTCCTTAATGTACATTTTGAAACTTGGGTTGTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp TCTGTAGCTTGTCACACTTCAACTACAGAAGGTAACTGTCACCATGAGCTAAGTTCTGTAGAGCTCCAATaGCAAGGAATGGTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: SVACHTSTTEGNCHHELSSVELQ*QGMVLL
Trigger: AAGAAGAACCATTCCTTGTCATTGGAGCTCTACAGA...ACTTAGCTCATGGTGACAGTTACCTTCTGTAGTTGAAGTGTGACAAGCTACAGA
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp GACTGGCTGCTAATAGAAACTGCTGCAAAGACAGTGACTGAGCAAAGTTTTGTTTCTGTAGAGCTCCAATaGCAAGGAATGGTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: DWLLIETAAKTVTEQSFVSVELQ*QGMVLL
Trigger: AAGAAGAACCATTCCTTGTCATTGGAGCTCTACAGA...AACAAAACTTTGCTCAGTCACTGTCTTTGCAGCAGTTTCTATTAGCAGCCAGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp AAACATAGGGTAACTGGGAGATTCTTTATAAAAGAAAGAACTCCTTCTTGGGAAAGTTCTGGGTGCTGTTaGTCCAGACACAAGGACTGG +
Preference number: 4 (lower is better)
Translates to: KHRVTGRFFIKERTPSWESSGCC*SRHKDW
Trigger: CCAGTCCTTGTGTCTGGAGCAACAGCACCCAGAACT...TTCCCAAGAAGGAGTTCTTTCTTTTATAAAGAATCTCCCAGTTACCCTATGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp ACCCAAGTTTCAAAATGTACATTAAGGAACTTAGGGACTGGCTCAGTGGGTAAACATCACAGCATTTACTaGTGTCTTCTGCCCACAGTT +
Preference number: 4 (lower is better)
Translates to: TQVSKCTLRNLGTGSVGKHHSIY*CLLPTV
Trigger: AACTGTGGGCAGAAGACACCAGTAAATGCTGTGATG...TTTACCCACTGAGCCAGTCCCTAAGTTCCTTAATGTACATTTTGAAACTTGGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp AGGTACATAGTGTGTTGCTCACGTTTAGAGCCACCCCCTAAGAGCAAGACACATACCTCTGAAGCATGTTaGTCCATTCTCTTTTATTTT +
Preference number: 4 (lower is better)
Translates to: RYIVCCSRLEPPPKSKTHTSEAC*SILFYF
Trigger: AAAATAAAAGAGAATGGACCAACATGCTTCAGAGGT...ATGTGTCTTGCTCTTAGGGGGTGGCTCTAAACGTGAGCAACACACTATGTACCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp TGTACAACCCAAGTTTCAAAATGTACATTAAGGAACTTAGGGACTGGCTCAGTGCAGATCTTTACTGTTTaGGTGTTTGCTGGTACTGCT +
Preference number: 4 (lower is better)
Translates to: CTTQVSKCTLRNLGTGSVQIFTV*VFAGTA
Trigger: AGCAGTACCAGCAAACACTCAAACAGTAAAGATCTG...CACTGAGCCAGTCCCTAAGTTCCTTAATGTACATTTTGAAACTTGGGTTGTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp ACAGGACAGAGAGTGACATACTTGAAATGTTTCCCCAGGAGAGTTTGGCATTCTATAGTCATTCGATGCTaGGCAATTGTAGTTAGTTTC +
Preference number: 4 (lower is better)
Translates to: TGQRVTYLKCFPRRVWHSIVIRC*AIVVSF
Trigger: GAAACTAACTACAATTGCTCAGCATCGAATGACTAT...AGAATGCCAAACTCTCCTGGGGAAACATTTCAAGTATGTCACTCTCTGTCCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR GCA 90 bp AAGAACAGGACAGAGAGTGACATACTTGAAATGTTTCCCCAGGAGAGTTTGGCACCTAGTAAACTCTTCTaGTTCAATTTCTGCATCCAA +
Preference number: 4 (lower is better)
Translates to: KNRTESDILEMFPQESLAPSKLF*FNFCIQ
Trigger: TTGGATGCAGAAATTGAAGCAGAAGAGTTTACTAGG...TGCCAAACTCTCCTGGGGAAACATTTCAAGTATGTCACTCTCTGTCCTGTTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp ACCCAAGTTTCAAAATGTACATTAAGGAACTTAGGGACTGGCTCAGTGGGTAAAGATCAAAACTGTTCCTaGAGGAAGCTGCAAATTAGC +
Preference number: 4 (lower is better)
Translates to: TQVSKCTLRNLGTGSVGKDQNCS*RKLQIS
Trigger: GCTAATTTGCAGCTTCCTCCAGGAACAGTTTTGATC...TTTACCCACTGAGCCAGTCCCTAAGTTCCTTAATGTACATTTTGAAACTTGGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp TCTGTAGCTTGTCACACTTCAACTACAGAAGGTAACTGTCACCATGAGCTAAGTTTCTCAATGAAGCTCTaGGAATTTGGAAGAAGCTGT +
Preference number: 4 (lower is better)
Translates to: SVACHTSTTEGNCHHELSFSMKL*EFGRSC
Trigger: ACAGCTTCTTCCAAATTCCCAGAGCTTCATTGAGAA...ACTTAGCTCATGGTGACAGTTACCTTCTGTAGTTGAAGTGTGACAAGCTACAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp GAAGCCAGAGAGTCAGCAACCTCACTGTATAATTATCAGCTATGTAATTCTGGCTTCTCAATGAAGCTCTaGGAATTTGGAAGAAGCTGT +
Preference number: 4 (lower is better)
Translates to: EARESATSLYNYQLCNSGFSMKL*EFGRSC
Trigger: ACAGCTTCTTCCAAATTCCCAGAGCTTCATTGAGAA...GCCAGAATTACATAGCTGATAATTATACAGTGAGGTTGCTGACTCTCTGGCTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp AGTCAGCAACCTCACTGTATAATTATCAGCTATGTAATTCTGGCTCAACTAATTGAACAGACAGAGTTCTaGGTGCTGTTGCTCCAGACA +
Preference number: 4 (lower is better)
Translates to: SQQPHCIIISYVILAQLIEQTEF*VLLLQT
Trigger: TGTCTGGAGCAACAGCACCCAGAACTCTGTCTGTTC...AATTAGTTGAGCCAGAATTACATAGCTGATAATTATACAGTGAGGTTGCTGACT
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp GTTTCCCCAGGAGAGTTTGGCATTCTTTCGGTATGTGATTTCAGTTTCCCCATTCTTTATGATGGAAGATaGAGGAAACTTACTAGTAGG +
Preference number: 4 (lower is better)
Translates to: VSPGEFGILSVCDFSFPILYDGR*RKLTSR
Trigger: CCTACTAGTAAGTTTCCTCCATCTTCCATCATAAAG...AATGGGGAAACTGAAATCACATACCGAAAGAATGCCAAACTCTCCTGGGGAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169862.2
CDS-3UTR CCA 90 bp TGTGTATTTAAAAACAATGTATCTGGCGAGCAAATCTACCCCAAAGTCTCCATTTTAGCATCTCTGTACTaGATCTGGGCAAGCTCCAAC +
Preference number: 4 (lower is better)
Translates to: CVFKNNVSGEQIYPKVSILASLY*IWASSN
Trigger: GTTGGAGCTTGCCCAGATCCAGTACAGAGATGCTAA...AATGGAGACTTTGGGGTAGATTTGCTCGCCAGATACATTGTTTTTAAATACACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp CCAAATGTTCACAGAACCCAAATGCAAATAAATAATAGACTCACTGCCAGGCAGGATTCTTGTGATTCTTaGACGAAATGGTTTGGTGGC +
Preference number: 4 (lower is better)
Translates to: PNVHRTQMQINNRLTARQDSCDS*TKWFGG
Trigger: GCCACCAAACCATTTCGTCCAAGAATCACAAGAATC...CTGCCTGGCAGTGAGTCTATTATTTATTTGCATTTGGGTTCTGTGAACATTTGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp ACAGGACAGAGAGTGACATACTTGAAATGTTTCCCCAGGAGAGTTTGGCATTCTACTGCTGCAACTCTTTaGCTTTTTGTTTTAATCTCA +
Preference number: 4 (lower is better)
Translates to: TGQRVTYLKCFPRRVWHSTAATL*LFVLIS
Trigger: TGAGATTAAAACAAAAAGCCAAAGAGTTGCAGCAGT...AGAATGCCAAACTCTCCTGGGGAAACATTTCAAGTATGTCACTCTCTGTCCTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR TCA 90 bp ACCCAAGTTTCAAAATGTACATTAAGGAACTTAGGGACTGGCTCAGTGGGTAAAATAGTCATTCGATGCTaGGCAATTGTAGTTAGTTTC +
Preference number: 4 (lower is better)
Translates to: TQVSKCTLRNLGTGSVGKIVIRC*AIVVSF
Trigger: GAAACTAACTACAATTGCTCAGCATCGAATGACTAT...TTTACCCACTGAGCCAGTCCCTAAGTTCCTTAATGTACATTTTGAAACTTGGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp AGTCAGCAACCTCACTGTATAATTATCAGCTATGTAATTCTGGCTCAACTAATTTGTTTGAGTGTTTGCTaGTACTGCTGGTCTTGGAGT +
Preference number: 4 (lower is better)
Translates to: SQQPHCIIISYVILAQLICLSVC*YCWSWS
Trigger: ACTCCAAGACCAGCAGTACCAGCAAACACTCAAACA...AATTAGTTGAGCCAGAATTACATAGCTGATAATTATACAGTGAGGTTGCTGACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp TGTGTATTTAAAAACAATGTATCTGGCGAGCAAATCTACCCCAAAGTCTCCATTGATTCTTGTGATTCTTaGACGAAATGGTTTGGTGGC +
Preference number: 4 (lower is better)
Translates to: CVFKNNVSGEQIYPKVSIDSCDS*TKWFGG
Trigger: GCCACCAAACCATTTCGTCCAAGAATCACAAGAATC...AATGGAGACTTTGGGGTAGATTTGCTCGCCAGATACATTGTTTTTAAATACACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp AGTCAGCAACCTCACTGTATAATTATCAGCTATGTAATTCTGGCTCAACTAATTACCTCTGAAGCATGTTaGTCCATTCTCTTTTATTTT +
Preference number: 4 (lower is better)
Translates to: SQQPHCIIISYVILAQLITSEAC*SILFYF
Trigger: AAAATAAAAGAGAATGGACCAACATGCTTCAGAGGT...AATTAGTTGAGCCAGAATTACATAGCTGATAATTATACAGTGAGGTTGCTGACT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CCA 90 bp AAACATAGGGTAACTGGGAGATTCTTTATAAAAGAAAGAACTCCTTCTTGGGAAACTGCTGCAACTCTTTaGCTTTTTGTTTTAATCTCA +
Preference number: 4 (lower is better)
Translates to: KHRVTGRFFIKERTPSWETAATL*LFVLIS
Trigger: TGAGATTAAAACAAAAAGCCAAAGAGTTGCAGCAGT...TTCCCAAGAAGGAGTTCTTTCTTTTATAAAGAATCTCCCAGTTACCCTATGTTT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS TCA 90 bp GGTAGTTGGATTGTCGTGGTGCCCGGCGTTTTCACGGTGACTATCTaGGGAGCGGGCAGCCTAGGGCTGCCGAGTTTAGGAAGGGCAGTG +
Preference number: 5 (lower is better)
Translates to: GSWIVVVPGVFTVTI*GAGSLGLPSLGRAV
Trigger: CACTGCCCTTCCTAAACTCGGCAGCCCTAGGCTGCCCGCTCCTCAGATAGTCACCGTGAAAACGCCGGGCACCACGACAATCCAACTACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CCA 90 bp AGCCGCCTGTGGAAGGAGGGTGCTCGGTTGTGTAACGATCTGGACTaGAGTGCCAATGGCAGGTTTATCAGCTTTGGTCCCAGCAGAGGT +
Preference number: 5 (lower is better)
Translates to: SRLWKEGARLCNDLD*SANGRFISFGPSRG
Trigger: ACCTCTGCTGGGACCAAAGCTGATAAACCTGCCATTGGCACTCCAGTCCAGATCGTTACACAACCGAGCACCCTCCTTCCACAGGCGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp CTCCTCAGAGAGAGGTACATAGTGTGTTGCTCACGTTTAGAGCCACCCCCTAAGCTGTCGTACCTCCTGTaGCAGCAGCTGGGGCAACAG +
Preference number: 5 (lower is better)
Translates to: LLRERYIVCCSRLEPPPKLSYLL*QQLGQQ
Trigger: CTGTTGCCCCAGCTGCTGCAACAGGAGGTACGACAG...CTTAGGGGGTGGCTCTAAACGTGAGCAACACACTATGTACCTCTCTCTGAGGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS GCA 90 bp GTTGCAGCTGTCGTACCTCCTGTTGCAGCAGCTGGGGCAACAGAATaGAGTGTCACAACTCCAGTGTTTGCTACTCCTGGACCAGCAAGT +
Preference number: 5 (lower is better)
Translates to: VAAVVPPVAAAGATE*SVTTPVFATPGPAS
Trigger: ACTTGCTGGTCCAGGAGTAGCAAACACTGGAGTTGTGACACTGCATTCTGTTGCCCCAGCTGCTGCAACAGGAGGTACGACAGCTGCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS GCA 90 bp TGCAGCAGCTGGGGCAACAGAATGCAGTGTCACAACTCCAGTGTTTaGTACTCCTGGACCAGCAAGTGGATTCAGGGTCTGCTGAACAGA +
Preference number: 5 (lower is better)
Translates to: CSSWGNRMQCHNSSV*YSWTSKWIQGLLNR
Trigger: TCTGTTCAGCAGACCCTGAATCCACTTGCTGGTCCAGGAGTAGCAAACACTGGAGTTGTGACACTGCATTCTGTTGCCCCAGCTGCTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CCA 90 bp CTGAACAGACAGAGTTCTGGGTGCTGTTGCTCCAGACACAAGGACTaGGGAAACTGTACTTGTCACCACAGGAGACGTTGCTGTTGTCAT +
Preference number: 5 (lower is better)
Translates to: LNRQSSGCCCSRHKD*GNCTCHHRRRCCCH
Trigger: ATGACAACAGCAACGTCTCCTGTGGTGACAAGTACAGTTTCCCCAGTCCTTGTGTCTGGAGCAACAGCACCCAGAACTCTGTCTGTTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CCA 90 bp TTGAAGCAAAACAGTTGCAGCTGTCGTACCTCCTGTTGCAGCAGCTaGGGCAACAGAATGCAGTGTCACAACTCCAGTGTTTGCTACTCC +
Preference number: 5 (lower is better)
Translates to: LKQNSCSCRTSCCSS*GNRMQCHNSSVCYS
Trigger: GGAGTAGCAAACACTGGAGTTGTGACACTGCATTCTGTTGCCCCAGCTGCTGCAACAGGAGGTACGACAGCTGCAACTGTTTTGCTTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp GACTGGCTGCTAATAGAAACTGCTGCAAAGACAGTGACTGAGCAAAGTTTTGTTCTGTCGTACCTCCTGTaGCAGCAGCTGGGGCAACAG +
Preference number: 5 (lower is better)
Translates to: DWLLIETAAKTVTEQSFVLSYLL*QQLGQQ
Trigger: CTGTTGCCCCAGCTGCTGCAACAGGAGGTACGACAG...AACAAAACTTTGCTCAGTCACTGTCTTTGCAGCAGTTTCTATTAGCAGCCAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CCA 90 bp TCTTCTGCCCACAGTTCTGAGTGCTCAATGGTGAGGAATGGGAAATaGAGGTCACATGATTCACACTGCTTCCTGAAGGCTGCTGTACAA +
Preference number: 5 (lower is better)
Translates to: SSAHSSECSMVRNGK*RSHDSHCFLKAAVQ
Trigger: TTGTACAGCAGCCTTCAGGAAGCAGTGTGAATCATGTGACCTCCATTTCCCATTCCTCACCATTGAGCACTCAGAACTGTGGGCAGAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp ACAGGACAGAGAGTGACATACTTGAAATGTTTCCCCAGGAGAGTTTGGCATTCTGAGTTCTGGGTGCTGTaGCTCCAGACACAAGGACTG +
Preference number: 5 (lower is better)
Translates to: TGQRVTYLKCFPRRVWHSEFWVL*LQTQGL
Trigger: CAGTCCTTGTGTCTGGAGCAACAGCACCCAGAACTC...AGAATGCCAAACTCTCCTGGGGAAACATTTCAAGTATGTCACTCTCTGTCCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp AGTTTCAGAAAGCATCTGAATTCTCAGCGGCATGAACCCACAGGCCACAAAGACGCAGGTTTATCAGCTTaGGTCCCAGCAGAGGTAATG +
Preference number: 5 (lower is better)
Translates to: SFRKHLNSQRHEPTGHKDAGLSA*VPAEVM
Trigger: CATTACCTCTGCTGGGACCAAAGCTGATAAACCTGC...GTCTTTGTGGCCTGTGGGTTCATGCCGCTGAGAATTCAGATGCTTTCTGAAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp AAGAACAGGACAGAGAGTGACATACTTGAAATGTTTCCCCAGGAGAGTTTGGCAGTGACAGGAACCACTTaGGTCACTAGAGTCCCCACT +
Preference number: 5 (lower is better)
Translates to: KNRTESDILEMFPQESLAVTGTT*VTRVPT
Trigger: AGTGGGGACTCTAGTGACCAAAGTGGTTCCTGTCAC...TGCCAAACTCTCCTGGGGAAACATTTCAAGTATGTCACTCTCTGTCCTGTTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp AGTTTCAGAAAGCATCTGAATTCTCAGCGGCATGAACCCACAGGCCACAAAGACATGTTACTTGTGGTCTaGGCTCCTGTTACAGCTTGC +
Preference number: 5 (lower is better)
Translates to: SFRKHLNSQRHEPTGHKDMLLVV*APVTAC
Trigger: GCAAGCTGTAACAGGAGCCAAGACCACAAGTAACAT...GTCTTTGTGGCCTGTGGGTTCATGCCGCTGAGAATTCAGATGCTTTCTGAAACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp GGCCAGTTAAACTCTTACAACAGTATAGAATGTGGCCATAACAGTCCCTATGGGCTGGGGAAACTGTACTaGTCACCACAGGAGACGTTG +
Preference number: 5 (lower is better)
Translates to: GQLNSYNSIECGHNSPYGLGKLY*SPQETL
Trigger: CAACGTCTCCTGTGGTGACAAGTACAGTTTCCCCAG...CCCATAGGGACTGTTATGGCCACATTCTATACTGTTGTAAGAGTTTAACTGGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp TCTGTAGCTTGTCACACTTCAACTACAGAAGGTAACTGTCACCATGAGCTAAGTGAGTTCTGGGTGCTGTaGCTCCAGACACAAGGACTG +
Preference number: 5 (lower is better)
Translates to: SVACHTSTTEGNCHHELSEFWVL*LQTQGL
Trigger: CAGTCCTTGTGTCTGGAGCAACAGCACCCAGAACTC...ACTTAGCTCATGGTGACAGTTACCTTCTGTAGTTGAAGTGTGACAAGCTACAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp CAAGGACCAGCTTTGGCATTCCCTGAGCAGCCACATCTATTTCAAGATAGCATTTCACAACTCCAGTGTTaGCTACTCCTGGACCAGCAA +
Preference number: 5 (lower is better)
Translates to: QGPALAFPEQPHLFQDSISQLQC*LLLDQQ
Trigger: TTGCTGGTCCAGGAGTAGCAAACACTGGAGTTGTGA...AATGCTATCTTGAAATAGATGTGGCTGCTCAGGGAATGCCAAAGCTGGTCCTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS GCA 90 bp GGCAACCACACTCTTCTTAAGAAAAGGGACGAGGTGCGGCTGAGGTaGAGACTTGAGTTCAATATACAGTTTCCTAGTAAACTCTTCTGC +
Preference number: 5 (lower is better)
Translates to: GNHTLLKKRDEVRLR*RLEFNIQFPSKLFC
Trigger: GCAGAAGAGTTTACTAGGAAACTGTATATTGAACTCAAGTCTGCACCTCAGCCGCACCTCGTCCCTTTTCTTAAGAAGAGTGTGGTTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CCA 90 bp CGGCACTGTACAGATCTTTACTGTTTGAGTGTTTGCTGGTACTGCTaGTCTTGGAGTTATGTTACTTGTGGTCTTGGCTCCTGTTACAGC +
Preference number: 5 (lower is better)
Translates to: RHCTDLYCLSVCWYC*SWSYVTCGLGSCYS
Trigger: GCTGTAACAGGAGCCAAGACCACAAGTAACATAACTCCAAGACCAGCAGTACCAGCAAACACTCAAACAGTAAAGATCTGTACAGTGCCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CCA 90 bp GCTAGAATTCGGCACTGTACAGATCTTTACTGTTTGAGTGTTTGCTaGTACTGCTGGTCTTGGAGTTATGTTACTTGTGGTCTTGGCTCC +
Preference number: 5 (lower is better)
Translates to: ARIRHCTDLYCLSVC*YCWSWSYVTCGLGS
Trigger: GGAGCCAAGACCACAAGTAACATAACTCCAAGACCAGCAGTACCAGCAAACACTCAAACAGTAAAGATCTGTACAGTGCCGAATTCTAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp GTTTCCCCAGGAGAGTTTGGCATTCTTTCGGTATGTGATTTCAGTTTCCCCATTATGTTACTTGTGGTCTaGGCTCCTGTTACAGCTTGC +
Preference number: 5 (lower is better)
Translates to: VSPGEFGILSVCDFSFPIMLLVV*APVTAC
Trigger: GCAAGCTGTAACAGGAGCCAAGACCACAAGTAACAT...AATGGGGAAACTGAAATCACATACCGAAAGAATGCCAAACTCTCCTGGGGAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp GTTTCCCCAGGAGAGTTTGGCATTCTTTCGGTATGTGATTTCAGTTTCCCCATTCTGGTACTGCTGGTCTaGGAGTTATGTTACTTGTGG +
Preference number: 5 (lower is better)
Translates to: VSPGEFGILSVCDFSFPILVLLV*ELCYLW
Trigger: CCACAAGTAACATAACTCCAAGACCAGCAGTACCAG...AATGGGGAAACTGAAATCACATACCGAAAGAATGCCAAACTCTCCTGGGGAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp TGTACAACCCAAGTTTCAAAATGTACATTAAGGAACTTAGGGACTGGCTCAGTGCTGGGGAAACTGTACTaGTCACCACAGGAGACGTTG +
Preference number: 5 (lower is better)
Translates to: CTTQVSKCTLRNLGTGSVLGKLY*SPQETL
Trigger: CAACGTCTCCTGTGGTGACAAGTACAGTTTCCCCAG...CACTGAGCCAGTCCCTAAGTTCCTTAATGTACATTTTGAAACTTGGGTTGTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp AACACTAGGAGACAGGCTCAGCACAGGATATATTTTGACTCCTTCTTTATCCCAGCAGGTTTATCAGCTTaGGTCCCAGCAGAGGTAATG +
Preference number: 5 (lower is better)
Translates to: NTRRQAQHRIYFDSFFIPAGLSA*VPAEVM
Trigger: CATTACCTCTGCTGGGACCAAAGCTGATAAACCTGC...TGGGATAAAGAAGGAGTCAAAATATATCCTGTGCTGAGCCTGTCTCCTAGTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS GCA 90 bp ATTCGGCACTGTACAGATCTTTACTGTTTGAGTGTTTGCTGGTACTaGTGGTCTTGGAGTTATGTTACTTGTGGTCTTGGCTCCTGTTAC +
Preference number: 5 (lower is better)
Translates to: IRHCTDLYCLSVCWY*WSWSYVTCGLGSCY
Trigger: GTAACAGGAGCCAAGACCACAAGTAACATAACTCCAAGACCAGCAGTACCAGCAAACACTCAAACAGTAAAGATCTGTACAGTGCCGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CCA 90 bp TGTACAGATCTTTACTGTTTGAGTGTTTGCTGGTACTGCTGGTCTTaGAGTTATGTTACTTGTGGTCTTGGCTCCTGTTACAGCTTGCTG +
Preference number: 5 (lower is better)
Translates to: CTDLYCLSVCWYCWS*SYVTCGLGSCYSLL
Trigger: CAGCAAGCTGTAACAGGAGCCAAGACCACAAGTAACATAACTCCAAGACCAGCAGTACCAGCAAACACTCAAACAGTAAAGATCTGTACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp TCTGTAGCTTGTCACACTTCAACTACAGAAGGTAACTGTCACCATGAGCTAAGTCTGGTACTGCTGGTCTaGGAGTTATGTTACTTGTGG +
Preference number: 5 (lower is better)
Translates to: SVACHTSTTEGNCHHELSLVLLV*ELCYLW
Trigger: CCACAAGTAACATAACTCCAAGACCAGCAGTACCAG...ACTTAGCTCATGGTGACAGTTACCTTCTGTAGTTGAAGTGTGACAAGCTACAGA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp CAAGGACCAGCTTTGGCATTCCCTGAGCAGCCACATCTATTTCAAGATAGCATTATAACACTCCCAAACTaGATGACTTCAGGGTGGATA +
Preference number: 5 (lower is better)
Translates to: QGPALAFPEQPHLFQDSIITLPN*MTSGWI
Trigger: TATCCACCCTGAAGTCATCAAGTTTGGGAGTGTTAT...AATGCTATCTTGAAATAGATGTGGCTGCTCAGGGAATGCCAAAGCTGGTCCTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp ACAGGACAGAGAGTGACATACTTGAAATGTTTCCCCAGGAGAGTTTGGCATTCTCTGCTGCCACTGTATTaGGTACTGATGTTGTTAGTG +
Preference number: 5 (lower is better)
Translates to: TGQRVTYLKCFPRRVWHSLLPLY*VLMLLV
Trigger: CACTAACAACATCAGTACCAAATACAGTGGCAGCAG...AGAATGCCAAACTCTCCTGGGGAAACATTTCAAGTATGTCACTCTCTGTCCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp ACCCAAGTTTCAAAATGTACATTAAGGAACTTAGGGACTGGCTCAGTGGGTAAACTTGGACGAAATGGTTaGGTGGCTGTTAGGCTGGAA +
Preference number: 5 (lower is better)
Translates to: TQVSKCTLRNLGTGSVGKLGRNG*VAVRLE
Trigger: TTCCAGCCTAACAGCCACCAAACCATTTCGTCCAAG...TTTACCCACTGAGCCAGTCCCTAAGTTCCTTAATGTACATTTTGAAACTTGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp TGTACAACCCAAGTTTCAAAATGTACATTAAGGAACTTAGGGACTGGCTCAGTGCTTGGACGAAATGGTTaGGTGGCTGTTAGGCTGGAA +
Preference number: 5 (lower is better)
Translates to: CTTQVSKCTLRNLGTGSVLGRNG*VAVRLE
Trigger: TTCCAGCCTAACAGCCACCAAACCATTTCGTCCAAG...CACTGAGCCAGTCCCTAAGTTCCTTAATGTACATTTTGAAACTTGGGTTGTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp AAGCTTGTCAGTGTAAGCAGTGGTCTTCCATACTCCAAGGGAGGGTTCAGAACATCCAGGCAGAGTAATTaGCTTTATGATGGAAGTAGT +
Preference number: 5 (lower is better)
Translates to: KLVSVSSGLPYSKGGFRTSRQSN*LYDGSS
Trigger: ACTACTTCCATCATAAAGCAAATTACTCTGCCTGGA...TGTTCTGAACCCTCCCTTGGAGTATGGAAGACCACTGCTTACACTGACAAGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234789.2
CDS GCA 90 bp AGGTGCAGACTTGAGTTCAATATACAGTTTCCTAGTAAACTCTTCTaGTTCAATTTCTGCATCCAAAAGCTGCTCCACCAGCCTCTTCAC +
Preference number: 5 (lower is better)
Translates to: RCRLEFNIQFPSKLF*FNFCIQKLLHQPLH
Trigger: GTGAAGAGGCTGGTGGAGCAGCTTTTGGATGCAGAAATTGAAGCAGAAGAGTTTACTAGGAAACTGTATATTGAACTCAAGTCTGCACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp AGTCAGCAACCTCACTGTATAATTATCAGCTATGTAATTCTGGCTCAACTAATTGTGACAGGAACCACTTaGGTCACTAGAGTCCCCACT +
Preference number: 5 (lower is better)
Translates to: SQQPHCIIISYVILAQLIVTGTT*VTRVPT
Trigger: AGTGGGGACTCTAGTGACCAAAGTGGTTCCTGTCAC...AATTAGTTGAGCCAGAATTACATAGCTGATAATTATACAGTGAGGTTGCTGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp AACACTAGGAGACAGGCTCAGCACAGGATATATTTTGACTCCTTCTTTATCCCATTGGAGTTATGTTACTaGTGGTCTTGGCTCCTGTTA +
Preference number: 5 (lower is better)
Translates to: NTRRQAQHRIYFDSFFIPLELCY*WSWLLL
Trigger: TAACAGGAGCCAAGACCACAAGTAACATAACTCCAA...TGGGATAAAGAAGGAGTCAAAATATATCCTGTGCTGAGCCTGTCTCCTAGTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp TGTACAACCCAAGTTTCAAAATGTACATTAAGGAACTTAGGGACTGGCTCAGTGTTACTGTTTGAGTGTTaGCTGGTACTGCTGGTCTTG +
Preference number: 5 (lower is better)
Translates to: CTTQVSKCTLRNLGTGSVLLFEC*LVLLVL
Trigger: CAAGACCAGCAGTACCAGCAAACACTCAAACAGTAA...CACTGAGCCAGTCCCTAAGTTCCTTAATGTACATTTTGAAACTTGGGTTGTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp GACTGGCTGCTAATAGAAACTGCTGCAAAGACAGTGACTGAGCAAAGTTTTGTTATAACACTCCCAAACTaGATGACTTCAGGGTGGATA +
Preference number: 5 (lower is better)
Translates to: DWLLIETAAKTVTEQSFVITLPN*MTSGWI
Trigger: TATCCACCCTGAAGTCATCAAGTTTGGGAGTGTTAT...AACAAAACTTTGCTCAGTCACTGTCTTTGCAGCAGTTTCTATTAGCAGCCAGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp ACCCAAGTTTCAAAATGTACATTAAGGAACTTAGGGACTGGCTCAGTGGGTAAACTGCTGCCACTGTATTaGGTACTGATGTTGTTAGTG +
Preference number: 5 (lower is better)
Translates to: TQVSKCTLRNLGTGSVGKLLPLY*VLMLLV
Trigger: CACTAACAACATCAGTACCAAATACAGTGGCAGCAG...TTTACCCACTGAGCCAGTCCCTAAGTTCCTTAATGTACATTTTGAAACTTGGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp CCAAATGTTCACAGAACCCAAATGCAAATAAATAATAGACTCACTGCCAGGCAGTTATTGGAGCGACTCTaGGCTGCCTTTAGTAACATC +
Preference number: 5 (lower is better)
Translates to: PNVHRTQMQINNRLTARQLLERL*AAFSNI
Trigger: GATGTTACTAAAGGCAGCCAAGAGTCGCTCCAATAA...CTGCCTGGCAGTGAGTCTATTATTTATTTGCATTTGGGTTCTGTGAACATTTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp AGTCAGCAACCTCACTGTATAATTATCAGCTATGTAATTCTGGCTCAACTAATTTCACAACTCCAGTGTTaGCTACTCCTGGACCAGCAA +
Preference number: 5 (lower is better)
Translates to: SQQPHCIIISYVILAQLISQLQC*LLLDQQ
Trigger: TTGCTGGTCCAGGAGTAGCAAACACTGGAGTTGTGA...AATTAGTTGAGCCAGAATTACATAGCTGATAATTATACAGTGAGGTTGCTGACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp TGTGTATTTAAAAACAATGTATCTGGCGAGCAAATCTACCCCAAAGTCTCCATTTTACTGTTTGAGTGTTaGCTGGTACTGCTGGTCTTG +
Preference number: 5 (lower is better)
Translates to: CVFKNNVSGEQIYPKVSILLFEC*LVLLVL
Trigger: CAAGACCAGCAGTACCAGCAAACACTCAAACAGTAA...AATGGAGACTTTGGGGTAGATTTGCTCGCCAGATACATTGTTTTTAAATACACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp CCAAATGTTCACAGAACCCAAATGCAAATAAATAATAGACTCACTGCCAGGCAGGTAGAAGGGTTATCTTaGAAGCTCTCATTTCCTGAT +
Preference number: 5 (lower is better)
Translates to: PNVHRTQMQINNRLTARQVEGLS*KLSFPD
Trigger: ATCAGGAAATGAGAGCTTCAAAGATAACCCTTCTAC...CTGCCTGGCAGTGAGTCTATTATTTATTTGCATTTGGGTTCTGTGAACATTTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp ACCCAAGTTTCAAAATGTACATTAAGGAACTTAGGGACTGGCTCAGTGGGTAAAGTAGAAGGGTTATCTTaGAAGCTCTCATTTCCTGAT +
Preference number: 5 (lower is better)
Translates to: TQVSKCTLRNLGTGSVGKVEGLS*KLSFPD
Trigger: ATCAGGAAATGAGAGCTTCAAAGATAACCCTTCTAC...TTTACCCACTGAGCCAGTCCCTAAGTTCCTTAATGTACATTTTGAAACTTGGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp AGTCAGCAACCTCACTGTATAATTATCAGCTATGTAATTCTGGCTCAACTAATTACAGATCTTTACTGTTaGAGTGTTTGCTGGTACTGC +
Preference number: 5 (lower is better)
Translates to: SQQPHCIIISYVILAQLITDLYC*SVCWYC
Trigger: GCAGTACCAGCAAACACTCAAACAGTAAAGATCTGT...AATTAGTTGAGCCAGAATTACATAGCTGATAATTATACAGTGAGGTTGCTGACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp TGTGTATTTAAAAACAATGTATCTGGCGAGCAAATCTACCCCAAAGTCTCCATTAACTGCTGCAACTCTTaGGCTTTTTGTTTTAATCTC +
Preference number: 5 (lower is better)
Translates to: CVFKNNVSGEQIYPKVSINCCNS*AFCFNL
Trigger: GAGATTAAAACAAAAAGCCAAAGAGTTGCAGCAGTT...AATGGAGACTTTGGGGTAGATTTGCTCGCCAGATACATTGTTTTTAAATACACA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS-3UTR CAA 90 bp AGTCAGCAACCTCACTGTATAATTATCAGCTATGTAATTCTGGCTCAACTAATTAACTGCTGCAACTCTTaGGCTTTTTGTTTTAATCTC +
Preference number: 5 (lower is better)
Translates to: SQQPHCIIISYVILAQLINCCNS*AFCFNL
Trigger: GAGATTAAAACAAAAAGCCAAAGAGTTGCAGCAGTT...AATTAGTTGAGCCAGAATTACATAGCTGATAATTATACAGTGAGGTTGCTGACT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CCA 72 bp TTGGTCACTAGAGTCCCCACTGGGGCTGGCAAGGGCTaGGGCGCCACAGACTCCACGCAAACACTGACAGGA +
Preference number: 6 (lower is better)
Translates to: LVTRVPTGAGKG*GATDSTQTLTG
Trigger: TCCTGTCAGTGTTTGCGTGGAGTCTGTGGCGCCCCAGCCCTTGCCAGCCCCAGTGGGGACTCTAGTGACCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS TCA 72 bp ATTGTCGTGGTGCCCGGCGTTTTCACGGTGACTATCTaGGGAGCGGGCAGCCTAGGGCTGCCGAGTTTAGGA +
Preference number: 6 (lower is better)
Translates to: IVVVPGVFTVTI*GAGSLGLPSLG
Trigger: TCCTAAACTCGGCAGCCCTAGGCTGCCCGCTCCTCAGATAGTCACCGTGAAAACGCCGGGCACCACGACAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CAA 72 bp CTGCCGAGTTTAGGAAGGGCAGTGACAGGAACCACTTaGGTCACTAGAGTCCCCACTGGGGCTGGCAAGGGC +
Preference number: 6 (lower is better)
Translates to: LPSLGRAVTGTT*VTRVPTGAGKG
Trigger: GCCCTTGCCAGCCCCAGTGGGGACTCTAGTGACCAAAGTGGTTCCTGTCACTGCCCTTCCTAAACTCGGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CAA 72 bp TGGAATGCCAGCCGCCTGTGGAAGGAGGGTGCTCGGTaGTGTAACGATCTGGACTGGAGTGCCAATGGCAGG +
Preference number: 6 (lower is better)
Translates to: WNASRLWKEGAR*CNDLDWSANGR
Trigger: CCTGCCATTGGCACTCCAGTCCAGATCGTTACACAACCGAGCACCCTCCTTCCACAGGCGGCTGGCATTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CCA 72 bp CTTGACTTTGGCTGTCTGTGGAATGCCAGCCGCCTGTaGAAGGAGGGTGCTCGGTTGTGTAACGATCTGGAC +
Preference number: 6 (lower is better)
Translates to: LDFGCLWNASRL*KEGARLCNDLD
Trigger: GTCCAGATCGTTACACAACCGAGCACCCTCCTTCCACAGGCGGCTGGCATTCCACAGACAGCCAAAGTCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CCA 72 bp ACTGTTCCTGGAGGAAGCTGCAAATTAGCCGGTAGTTaGATTGTCGTGGTGCCCGGCGTTTTCACGGTGACT +
Preference number: 6 (lower is better)
Translates to: TVPGGSCKLAGS*IVVVPGVFTVT
Trigger: AGTCACCGTGAAAACGCCGGGCACCACGACAATCCAACTACCGGCTAATTTGCAGCTTCCTCCAGGAACAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CCA 72 bp CAGAGTTCTGGGTGCTGTTGCTCCAGACACAAGGACTaGGGAAACTGTACTTGTCACCACAGGAGACGTTGC +
Preference number: 6 (lower is better)
Translates to: QSSGCCCSRHKD*GNCTCHHRRRC
Trigger: GCAACGTCTCCTGTGGTGACAAGTACAGTTTCCCCAGTCCTTGTGTCTGGAGCAACAGCACCCAGAACTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CCA 72 bp TGGAATAGCCAGTGTTACTGCTGCCCCAGACACAACTaGATTCTCAGGCTGAAGGGACACTGCTGCCACTGT +
Preference number: 6 (lower is better)
Translates to: WNSQCYCCPRHN*ILRLKGHCCHC
Trigger: ACAGTGGCAGCAGTGTCCCTTCAGCCTGAGAATCCAGTTGTGTCTGGGGCAGCAGTAACACTGGCTATTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS GCA 72 bp CAGGGTCTGCTGAACAGACAGAGTTCTGGGTGCTGTTaGTCCAGACACAAGGACTGGGGAAACTGTACTTGT +
Preference number: 6 (lower is better)
Translates to: QGLLNRQSSGCC*SRHKDWGNCTC
Trigger: ACAAGTACAGTTTCCCCAGTCCTTGTGTCTGGAGCAACAGCACCCAGAACTCTGTCTGTTCAGCAGACCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CCA 72 bp TTTGGTCCCAGCAGAGGTAATGGCAGGCTTCGCAGATaGAAGACAAAGAGGTGTAGCGGACGCTTCTCCAAA +
Preference number: 6 (lower is better)
Translates to: FGPSRGNGRLRR*KTKRCSGRFSK
Trigger: TTTGGAGAAGCGTCCGCTACACCTCTTTGTCTTCCATCTGCGAAGCCTGCCATTACCTCTGCTGGGACCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CAA 72 bp ACACTGCTTCCTGAAGGCTGCTGTACAACTAGTTGCTaGACTTTGGCTGTCTGTGGAATGCCAGCCGCCTGT +
Preference number: 6 (lower is better)
Translates to: TLLPEGCCTTSC*TLAVCGMPAAC
Trigger: ACAGGCGGCTGGCATTCCACAGACAGCCAAAGTCAAGCAACTAGTTGTACAGCAGCCTTCAGGAAGCAGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CAA 90 bp TTCTGGGTGCTGTTGCTCCAGACACAAGGACTGGGGAAACTGTACTaGTCACCACAGGAGACGTTGCTGTTGTCATGGTACAGGAGGAAA +
Preference number: 6 (lower is better)
Translates to: FWVLLLQTQGLGKLY*SPQETLLLSWYRRK
Trigger: TTTCCTCCTGTACCATGACAACAGCAACGTCTCCTGTGGTGACAAGTACAGTTTCCCCAGTCCTTGTGTCTGGAGCAACAGCACCCAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS TCA 72 bp GTTACTGCTGCCCCAGACACAACTGGATTCTCAGGCTaGAGGGACACTGCTGCCACTGTATTTGGTACTGAT +
Preference number: 6 (lower is better)
Translates to: VTAAPDTTGFSG*RDTAATVFGTD
Trigger: ATCAGTACCAAATACAGTGGCAGCAGTGTCCCTTCAGCCTGAGAATCCAGTTGTGTCTGGGGCAGCAGTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS GCA 72 bp TTGAAGCAAAACAGTTGCAGCTGTCGTACCTCCTGTTaGAGCAGCTGGGGCAACAGAATGCAGTGTCACAAC +
Preference number: 6 (lower is better)
Translates to: LKQNSCSCRTSC*SSWGNRMQCHN
Trigger: GTTGTGACACTGCATTCTGTTGCCCCAGCTGCTGCAACAGGAGGTACGACAGCTGCAACTGTTTTGCTTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CAA 72 bp CTGTTGCTCCAGACACAAGGACTGGGGAAACTGTACTaGTCACCACAGGAGACGTTGCTGTTGTCATGGTAC +
Preference number: 6 (lower is better)
Translates to: LLLQTQGLGKLY*SPQETLLLSWY
Trigger: GTACCATGACAACAGCAACGTCTCCTGTGGTGACAAGTACAGTTTCCCCAGTCCTTGTGTCTGGAGCAACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CCA 72 bp GTACTGCTGGTCTTGGAGTTATGTTACTTGTGGTCTTaGCTCCTGTTACAGCTTGCTGAGGCGATACCAGCA +
Preference number: 6 (lower is better)
Translates to: VLLVLELCYLWS*LLLQLAEAIPA
Trigger: TGCTGGTATCGCCTCAGCAAGCTGTAACAGGAGCCAAGACCACAAGTAACATAACTCCAAGACCAGCAGTAC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CCA 72 bp AGAATGCAGTGTCACAACTCCAGTGTTTGCTACTCCTaGACCAGCAAGTGGATTCAGGGTCTGCTGAACAGA +
Preference number: 6 (lower is better)
Translates to: RMQCHNSSVCYS*TSKWIQGLLNR
Trigger: TCTGTTCAGCAGACCCTGAATCCACTTGCTGGTCCAGGAGTAGCAAACACTGGAGTTGTGACACTGCATTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS TCA 72 bp TGGTGTCTTCTGCCCACAGTTCTGAGTGCTCAATGGTaGGGAATGGGAAATGGAGGTCACATGATTCACACT +
Preference number: 6 (lower is better)
Translates to: WCLLPTVLSAQW*GMGNGGHMIHT
Trigger: AGTGTGAATCATGTGACCTCCATTTCCCATTCCTCACCATTGAGCACTCAGAACTGTGGGCAGAAGACACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS TCA 72 bp CAGGAGACGTTGCTGTTGTCATGGTACAGGAGGAAATaGCCACATCACCAGAAACTTCCTTCACACAGTTCT +
Preference number: 6 (lower is better)
Translates to: QETLLLSWYRRK*PHHQKLPSHSS
Trigger: AGAACTGTGTGAAGGAAGTTTCTGGTGATGTGGTCATTTCCTCCTGTACCATGACAACAGCAACGTCTCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CAA 72 bp AGTTATGTTACTTGTGGTCTTGGCTCCTGTTACAGCTaGCTGAGGCGATACCAGCATCAACTGACCACTGTT +
Preference number: 6 (lower is better)
Translates to: SYVTCGLGSCYS*LRRYQHQLTTV
Trigger: AACAGTGGTCAGTTGATGCTGGTATCGCCTCAGCAAGCTGTAACAGGAGCCAAGACCACAAGTAACATAACT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CAA 90 bp TGGTCTTGGAGTTATGTTACTTGTGGTCTTGGCTCCTGTTACAGCTaGCTGAGGCGATACCAGCATCAACTGACCACTGTTACTTTTGAT +
Preference number: 6 (lower is better)
Translates to: WSWSYVTCGLGSCYS*LRRYQHQLTTVTFD
Trigger: ATCAAAAGTAACAGTGGTCAGTTGATGCTGGTATCGCCTCAGCAAGCTGTAACAGGAGCCAAGACCACAAGTAACATAACTCCAAGACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CAA 90 bp GGGACACTGCTGCCACTGTATTTGGTACTGATGTTGTTAGTGGTTTaGAAGTTTGAAGCAAAACAGTTGCAGCTGTCGTACCTCCTGTTG +
Preference number: 6 (lower is better)
Translates to: GTLLPLYLVLMLLVV*KFEAKQLQLSYLLL
Trigger: CAACAGGAGGTACGACAGCTGCAACTGTTTTGCTTCAAACTTCAAAACCACTAACAACATCAGTACCAAATACAGTGGCAGCAGTGTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS TCA 72 bp ACCACACTCTTCTTAAGAAAAGGGACGAGGTGCGGCTaGGGTGCAGACTTGAGTTCAATATACAGTTTCCTA +
Preference number: 6 (lower is better)
Translates to: TTLFLRKGTRCG*GADLSSIYSFL
Trigger: TAGGAAACTGTATATTGAACTCAAGTCTGCACCTCAGCCGCACCTCGTCCCTTTTCTTAAGAAGAGTGTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CCA 72 bp CTTTATGATGGAAGTAGTAGGCATCACAGCATTTACTaGTGTCTTCTGCCCACAGTTCTGAGTGCTCAATGG +
Preference number: 6 (lower is better)
Translates to: LYDGSSRHHSIY*CLLPTVLSAQW
Trigger: CCATTGAGCACTCAGAACTGTGGGCAGAAGACACCAGTAAATGCTGTGATGCCTACTACTTCCATCATAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234789.2
CDS CAA 90 bp CTGTACAGATCTTTACTGTTTGAGTGTTTGCTGGTACTGCTGGTCTaGGAGTTATGTTACTTGTGGTCTTGGCTCCTGTTACAGCTTGCT +
Preference number: 6 (lower is better)
Translates to: LYRSLLFECLLVLLV*ELCYLWSWLLLQLA
Trigger: AGCAAGCTGTAACAGGAGCCAAGACCACAAGTAACATAACTCCAAGACCAGCAGTACCAGCAAACACTCAAACAGTAAAGATCTGTACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CCA 72 bp CTTTACTGTTTGAGTGTTTGCTGGTACTGCTGGTCTTaGAGTTATGTTACTTGTGGTCTTGGCTCCTGTTAC +
Preference number: 6 (lower is better)
Translates to: LYCLSVCWYCWS*SYVTCGLGSCY
Trigger: GTAACAGGAGCCAAGACCACAAGTAACATAACTCCAAGACCAGCAGTACCAGCAAACACTCAAACAGTAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CCA 72 bp ACAGATCTTTACTGTTTGAGTGTTTGCTGGTACTGCTaGTCTTGGAGTTATGTTACTTGTGGTCTTGGCTCC +
Preference number: 6 (lower is better)
Translates to: TDLYCLSVCWYC*SWSYVTCGLGS
Trigger: GGAGCCAAGACCACAAGTAACATAACTCCAAGACCAGCAGTACCAGCAAACACTCAAACAGTAAAGATCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CCA 72 bp CGGCACTGTACAGATCTTTACTGTTTGAGTGTTTGCTaGTACTGCTGGTCTTGGAGTTATGTTACTTGTGGT +
Preference number: 6 (lower is better)
Translates to: RHCTDLYCLSVC*YCWSWSYVTCG
Trigger: ACCACAAGTAACATAACTCCAAGACCAGCAGTACCAGCAAACACTCAAACAGTAAAGATCTGTACAGTGCCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS GCA 72 bp TGTACAGATCTTTACTGTTTGAGTGTTTGCTGGTACTaGTGGTCTTGGAGTTATGTTACTTGTGGTCTTGGC +
Preference number: 6 (lower is better)
Translates to: CTDLYCLSVCWY*WSWSYVTCGLG
Trigger: GCCAAGACCACAAGTAACATAACTCCAAGACCAGCAGTACCAGCAAACACTCAAACAGTAAAGATCTGTACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS GCA 72 bp ACTCTTCTTAAGAAAAGGGACGAGGTGCGGCTGAGGTaGAGACTTGAGTTCAATATACAGTTTCCTAGTAAA +
Preference number: 6 (lower is better)
Translates to: TLLKKRDEVRLR*RLEFNIQFPSK
Trigger: TTTACTAGGAAACTGTATATTGAACTCAAGTCTGCACCTCAGCCGCACCTCGTCCCTTTTCTTAAGAAGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CAA 72 bp TCTTTACTGTTTGAGTGTTTGCTGGTACTGCTGGTCTaGGAGTTATGTTACTTGTGGTCTTGGCTCCTGTTA +
Preference number: 6 (lower is better)
Translates to: SLLFECLLVLLV*ELCYLWSWLLL
Trigger: TAACAGGAGCCAAGACCACAAGTAACATAACTCCAAGACCAGCAGTACCAGCAAACACTCAAACAGTAAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS GCA 72 bp ATTCGGCACTGTACAGATCTTTACTGTTTGAGTGTTTaGTGGTACTGCTGGTCTTGGAGTTATGTTACTTGT +
Preference number: 6 (lower is better)
Translates to: IRHCTDLYCLSV*WYCWSWSYVTC
Trigger: ACAAGTAACATAACTCCAAGACCAGCAGTACCAGCAAACACTCAAACAGTAAAGATCTGTACAGTGCCGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS GCA 72 bp ATACAGTTTCCTAGTAAACTCTTCTGCTTCAATTTCTaGATCCAAAAGCTGCTCCACCAGCCTCTTCACATT +
Preference number: 6 (lower is better)
Translates to: IQFPSKLFCFNF*IQKLLHQPLHI
Trigger: AATGTGAAGAGGCTGGTGGAGCAGCTTTTGGATGCAGAAATTGAAGCAGAAGAGTTTACTAGGAAACTGTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS CAA 72 bp AATTCGGCACTGTACAGATCTTTACTGTTTGAGTGTTaGCTGGTACTGCTGGTCTTGGAGTTATGTTACTTG +
Preference number: 6 (lower is better)
Translates to: NSALYRSLLFEC*LVLLVLELCYL
Trigger: CAAGTAACATAACTCCAAGACCAGCAGTACCAGCAAACACTCAAACAGTAAAGATCTGTACAGTGCCGAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2
CDS GCA 72 bp CTTGAGTTCAATATACAGTTTCCTAGTAAACTCTTCTaGTTCAATTTCTGCATCCAAAAGCTGCTCCACCAG +
Preference number: 6 (lower is better)
Translates to: LEFNIQFPSKLF*FNFCIQKLLHQ
Trigger: CTGGTGGAGCAGCTTTTGGATGCAGAAATTGAAGCAGAAGAGTTTACTAGGAAACTGTATATTGAACTCAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169862.2
ENSMUST00000234789.2