RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TAF4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039117

Ensembl transcript IDs: ENSMUST00000041618.13, ENSMUST00000227325.2

Found 280 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGTCAGCTGTCCTGTGAGAGCACCCACAGGCCTTTGTGTTCTCTCTaGTGCAGACACGGTTTCTGCCGCACTGAAGAGCTGATTTATAAA +
Preference number: 1 (lower is better)
Translates to: GQLSCESTHRPLCSL*CRHGFCRTEELIYK
Trigger: TTTATAAATCAGCTCTTCAGTGCGGCAGAAACCGTGTCTGCAGCAGAGAGAACACAAAGGCCTGTGGGTGCTCTCACAGGACAGCTGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR GCA 90 bp TCACTTCCTAGGCTCTCACTTCCTTCCACTTCACAGCTTCCAAACTaGAGCAAATCAATTGTGTTTGTACAGGTGCTGCCCCCGGCCTGC +
Preference number: 1 (lower is better)
Translates to: SLPRLSLPSTSQLPN*SKSIVFVQVLPPAC
Trigger: GCAGGCCGGGGGCAGCACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGAAGGAAGTGAGAGCCTAGGAAGTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR TCA 90 bp TGTGTTCTCTCTGCTGCAGACACGGTTTCTGCCGCACTGAAGAGCTaGTTTATAAACAGGAGTATAAAACTGCTCCATTGTAAAGAGGTG +
Preference number: 1 (lower is better)
Translates to: CVLSAADTVSAALKS*FINRSIKLLHCKEV
Trigger: CACCTCTTTACAATGGAGCAGTTTTATACTCCTGTTTATAAATCAGCTCTTCAGTGCGGCAGAAACCGTGTCTGCAGCAGAGAGAACACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR GCA 90 bp GAGGTGATAAATAGTCTAAAAAGTCAGCTTGCTTCGCCAACTGACTaGTACAACAGAAAGGAAGAGATGAGGTCATCGGCTGTAGACATA +
Preference number: 1 (lower is better)
Translates to: EVINSLKSQLASPTD*YNRKEEMRSSAVDI
Trigger: TATGTCTACAGCCGATGACCTCATCTCTTCCTTTCTGTTGTAGCAGTCAGTTGGCGAAGCAAGCTGACTTTTTAGACTATTTATCACCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR GCA 90 bp AAAGAAGGGGCTTTGCTCTGGACGCCTGTAAGGTTGGCCACAGCTTaGATACAGTCTCTTAGCAAAATAATTATAGTTTACATAGCCATT +
Preference number: 1 (lower is better)
Translates to: KEGALLWTPVRLATA*IQSLSKIIIVYIAI
Trigger: AATGGCTATGTAAACTATAATTATTTTGCTAAGAGACTGTATGCAAGCTGTGGCCAACCTTACAGGCGTCCAGAGCAAAGCCCCTTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR-3UTR TCA 90 bp CCCCCGGCCTGCACCCCGGCCTCTACTGCAGACCGGGACCCTGCTTGGAGCTTGGCCGCACTGAAGAGCTaGTTTATAAACAGGAGTATA +
Preference number: 2 (lower is better)
Translates to: PPACTPASTADRDPAWSLAALKS*FINRSI
Trigger: TATACTCCTGTTTATAAATCAGCTCTTCAGTGCGGC...CAAGCTCCAAGCAGGGTCCCGGTCTGCAGTAGAGGCCGGGGTGCAGGCCGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR CAA 90 bp AGGATGAGCTCGGGTCAGCTGTCCTGTGAGAGCACCCACAGGCCTTaGTGTTCTCTCTGCTGCAGACACGGTTTCTGCCGCACTGAAGAG +
Preference number: 2 (lower is better)
Translates to: RMSSGQLSCESTHRP*CSLCCRHGFCRTEE
Trigger: CTCTTCAGTGCGGCAGAAACCGTGTCTGCAGCAGAGAGAACACAAAGGCCTGTGGGTGCTCTCACAGGACAGCTGACCCGAGCTCATCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR CAA 90 bp TTCCTTCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTaGTACAGGTGCTGCCCCCGGCCTGCACCCCGGCCTCTACTGCAG +
Preference number: 2 (lower is better)
Translates to: FLPLHSFQTAANQLC*YRCCPRPAPRPLLQ
Trigger: CTGCAGTAGAGGCCGGGGTGCAGGCCGGGGGCAGCACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGAAGGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR CAA 90 bp TCTCACTTCCTTCCACTTCACAGCTTCCAAACTGCAGCAAATCAATaGTGTTTGTACAGGTGCTGCCCCCGGCCTGCACCCCGGCCTCTA +
Preference number: 2 (lower is better)
Translates to: SHFLPLHSFQTAANQ*CLYRCCPRPAPRPL
Trigger: TAGAGGCCGGGGTGCAGGCCGGGGGCAGCACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGAAGGAAGTGAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR-3UTR GCA 90 bp AGAGATGAGGTCATCGGCTGTAGACATACACCTAGCGGGAGTCAGGGTGAGCTGTTGTGTTCTCTCTGCTaGAGACACGGTTTCTGCCGC +
Preference number: 2 (lower is better)
Translates to: RDEVIGCRHTPSGSQGELLCSLC*RHGFCR
Trigger: GCGGCAGAAACCGTGTCTGCAGCAGAGAGAACACAA...CAGCTCACCCTGACTCCCGCTAGGTGTATGTCTACAGCCGATGACCTCATCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR-3UTR GCA 90 bp AGGTTCTCACTTCCTAGGCTCTCACTTCCTTCCACTTCACAGCTTCCAAACTGCTTGTGTTTGTACAGGTaGTGCCCCCGGCCTGCACCC +
Preference number: 2 (lower is better)
Translates to: RFSLPRLSLPSTSQLPNCLCLYR*CPRPAP
Trigger: GGGTGCAGGCCGGGGGCAGCACCTGTACAAACACAA...GCAGTTTGGAAGCTGTGAAGTGGAAGGAAGTGAGAGCCTAGGAAGTGAGAACCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR-3UTR TCA 90 bp AAGCGCTTCCATCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCGGGTCAGCTGTCCTGTaGGAGCACCCACAGGCCTTT +
Preference number: 2 (lower is better)
Translates to: KRFHQSLNMACLARRPLSGSAVL*EHPQAF
Trigger: AAAGGCCTGTGGGTGCTCTCACAGGACAGCTGACCC...GCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGATGGAAGCGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR-3UTR TCA 90 bp CCTTCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGGGGTCAGCTGTCCTGTaGGAGCACCCACAGGCCTTT +
Preference number: 2 (lower is better)
Translates to: PSTSQLPNCSKSIVFVQVGSAVL*EHPQAF
Trigger: AAAGGCCTGTGGGTGCTCTCACAGGACAGCTGACCC...CACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR-3UTR GCA 90 bp TCAGTTCACACGTGCGAATTGAAGTCTAACATGAGAATCCACACGGAGAAAGCCTTGTGTTCTCTCTGCTaGAGACACGGTTTCTGCCGC +
Preference number: 2 (lower is better)
Translates to: SVHTCELKSNMRIHTEKALCSLC*RHGFCR
Trigger: GCGGCAGAAACCGTGTCTGCAGCAGAGAGAACACAA...GGCTTTCTCCGTGTGGATTCTCATGTTAGACTTCAATTCGCACGTGTGAACTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR CAA 90 bp AATTATGTACAATTACTGACAAAATACACCAACCATTTCCAACACTaGATCCACACTGAGAAACAGTCTGTTGTTGATTCTTCTCAACTC +
Preference number: 2 (lower is better)
Translates to: NYVQLLTKYTNHFQH*IHTEKQSVVDSSQL
Trigger: GAGTTGAGAAGAATCAACAACAGACTGTTTCTCAGTGTGGATCAAGTGTTGGAAATGGTTGGTGTATTTTGTCAGTAATTGTACATAATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR-3UTR CAA 90 bp TGCCCCCGGCCTGCACCCCGGCCTCTACTGCAGACCGGGACCCTGCTTGGAGCTGTCTTTAAATATGGCTaGTTTGGCAAGAAGGCCACT +
Preference number: 3 (lower is better)
Translates to: CPRPAPRPLLQTGTLLGAVFKYG*FGKKAT
Trigger: AGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGAC...AGCTCCAAGCAGGGTCCCGGTCTGCAGTAGAGGCCGGGGTGCAGGCCGGGGGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR-3UTR CAA 90 bp CCCCCGGCCTGCACCCCGGCCTCTACTGCAGACCGGGACCCTGCTTGGAGCTTGCAATATCCCATTTGCTaGTTACAAAAAGGCGTAATC +
Preference number: 3 (lower is better)
Translates to: PPACTPASTADRDPAWSLQYPIC*LQKGVI
Trigger: GATTACGCCTTTTTGTAACAAGCAAATGGGATATTG...CAAGCTCCAAGCAGGGTCCCGGTCTGCAGTAGAGGCCGGGGTGCAGGCCGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR GCA 72 bp CAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGCTaGCCCCGGCCTGCACCCCGGCCTCTACTGCAGACC +
Preference number: 3 (lower is better)
Translates to: QTAANQLCLYRC*PRPAPRPLLQT
Trigger: GGTCTGCAGTAGAGGCCGGGGTGCAGGCCGGGGGCAGCACCTGTACAAACACAATTGATTTGCTGCAGTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR GCA 72 bp TCCTGTGAGAGCACCCACAGGCCTTTGTGTTCTCTCTaGTGCAGACACGGTTTCTGCCGCACTGAAGAGCTG +
Preference number: 3 (lower is better)
Translates to: SCESTHRPLCSL*CRHGFCRTEEL
Trigger: CAGCTCTTCAGTGCGGCAGAAACCGTGTCTGCAGCAGAGAGAACACAAAGGCCTGTGGGTGCTCTCACAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR-3UTR CAA 90 bp GCTTGTGTTCCTGGGGAGCTTCGTGTAGACGGGAGGGAAGGGACAGGACAGGGCGTCTTTAAATATGGCTaGTTTGGCAAGAAGGCCACT +
Preference number: 3 (lower is better)
Translates to: ACVPGELRVDGREGTGQGVFKYG*FGKKAT
Trigger: AGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGAC...GCCCTGTCCTGTCCCTTCCCTCCCGTCTACACGAAGCTCCCCAGGAACACAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR-3UTR CAA 90 bp TCAGTTCACACGTGCGAATTGAAGTCTAACATGAGAATCCACACGGAGAAAGCCGACCCTGCTTGGAGCTaGTGTTCCTGGGGAGCTTCG +
Preference number: 3 (lower is better)
Translates to: SVHTCELKSNMRIHTEKADPAWS*CSWGAS
Trigger: CGAAGCTCCCCAGGAACACAAGCTCCAAGCAGGGTC...GGCTTTCTCCGTGTGGATTCTCATGTTAGACTTCAATTCGCACGTGTGAACTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR-3UTR CAA 90 bp TACACCAACCATTTCCAACACTTGATCCACACTGAGAAACAGTCTGTTGTTGATGACCCTGCTTGGAGCTaGTGTTCCTGGGGAGCTTCG +
Preference number: 3 (lower is better)
Translates to: YTNHFQHLIHTEKQSVVDDPAWS*CSWGAS
Trigger: CGAAGCTCCCCAGGAACACAAGCTCCAAGCAGGGTC...ATCAACAACAGACTGTTTCTCAGTGTGGATCAAGTGTTGGAAATGGTTGGTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR GCA 72 bp AGGCTCTCACTTCCTTCCACTTCACAGCTTCCAAACTaGAGCAAATCAATTGTGTTTGTACAGGTGCTGCCC +
Preference number: 3 (lower is better)
Translates to: RLSLPSTSQLPN*SKSIVFVQVLP
Trigger: GGGCAGCACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGAAGGAAGTGAGAGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR-3UTR CAA 90 bp TCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGCTGTTAAATATGGCTTGTTaGGCAAGAAGGCCACTCAGC +
Preference number: 3 (lower is better)
Translates to: STSQLPNCSKSIVFVQVLLNMAC*ARRPLS
Trigger: GCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAA...CAGCACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR TCA 72 bp TCTGCTGCAGACACGGTTTCTGCCGCACTGAAGAGCTaGTTTATAAACAGGAGTATAAAACTGCTCCATTGT +
Preference number: 3 (lower is better)
Translates to: SAADTVSAALKS*FINRSIKLLHC
Trigger: ACAATGGAGCAGTTTTATACTCCTGTTTATAAATCAGCTCTTCAGTGCGGCAGAAACCGTGTCTGCAGCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR GCA 72 bp AATAGTCTAAAAAGTCAGCTTGCTTCGCCAACTGACTaGTACAACAGAAAGGAAGAGATGAGGTCATCGGCT +
Preference number: 3 (lower is better)
Translates to: NSLKSQLASPTD*YNRKEEMRSSA
Trigger: AGCCGATGACCTCATCTCTTCCTTTCTGTTGTAGCAGTCAGTTGGCGAAGCAAGCTGACTTTTTAGACTATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR-3UTR CAA 90 bp CCTTCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGCAATATCCCATTTGCTaGTTACAAAAAGGCGTAATC +
Preference number: 3 (lower is better)
Translates to: PSTSQLPNCSKSIVFVQVQYPIC*LQKGVI
Trigger: GATTACGCCTTTTTGTAACAAGCAAATGGGATATTG...CACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGAAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR GCA 72 bp CAATATCCCATTTGCTTGTTACAAAAAGGCGTAATCTaGAAATATATAAAAACGTCCGCAAGCATCCCATCA +
Preference number: 3 (lower is better)
Translates to: QYPICLLQKGVI*KYIKTSASIPS
Trigger: TGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTTTGTAACAAGCAAATGGGATATTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp TGCCCCCGGCCTGCACCCCGGCCTCTACTGCAGACCGGGACCCTGCTTGGAGCTCCTGGGCCCGATCGCTaGCAGTGCAGTGAGGTTGGC +
Preference number: 4 (lower is better)
Translates to: CPRPAPRPLLQTGTLLGAPGPDR*QCSEVG
Trigger: GCCAACCTCACTGCACTGGCAGCGATCGGGCCCAGG...AGCTCCAAGCAGGGTCCCGGTCTGCAGTAGAGGCCGGGGTGCAGGCCGGGGGCA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp CCCCCGGCCTGCACCCCGGCCTCTACTGCAGACCGGGACCCTGCTTGGAGCTTGGGCTTCGGGGGCTGCTaGATCACCTGTGTGGGCTGC +
Preference number: 4 (lower is better)
Translates to: PPACTPASTADRDPAWSLGFGGC*ITCVGC
Trigger: GCAGCCCACACAGGTGATCCAGCAGCCCCCGAAGCC...CAAGCTCCAAGCAGGGTCCCGGTCTGCAGTAGAGGCCGGGGTGCAGGCCGGGGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp CCCCCGGCCTGCACCCCGGCCTCTACTGCAGACCGGGACCCTGCTTGGAGCTTGAGCACCTGTGGGGGTTaGAGGACGGGGTGCCATGGT +
Preference number: 4 (lower is better)
Translates to: PPACTPASTADRDPAWSLSTCGG*RTGCHG
Trigger: ACCATGGCACCCCGTCCTGCAACCCCCACAGGTGCT...CAAGCTCCAAGCAGGGTCCCGGTCTGCAGTAGAGGCCGGGGTGCAGGCCGGGGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp TGCCCCCGGCCTGCACCCCGGCCTCTACTGCAGACCGGGACCCTGCTTGGAGCTGCGACCATGGGTGTCTaGGTCAAGGTCACCTGCGGG +
Preference number: 4 (lower is better)
Translates to: CPRPAPRPLLQTGTLLGAATMGV*VKVTCG
Trigger: CCCGCAGGTGACCTTGACGCAGACACCCATGGTCGC...AGCTCCAAGCAGGGTCCCGGTCTGCAGTAGAGGCCGGGGTGCAGGCCGGGGGCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp TGCCCCCGGCCTGCACCCCGGCCTCTACTGCAGACCGGGACCCTGCTTGGAGCTCGTCCACCTCGCTGTTaGAGAAGACCTCGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: CPRPAPRPLLQTGTLLGARPPRC*RRPRPA
Trigger: TGCTGGACGAGGTCTTCTTCAACAGCGAGGTGGACG...AGCTCCAAGCAGGGTCCCGGTCTGCAGTAGAGGCCGGGGTGCAGGCCGGGGGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp TGCCCCCGGCCTGCACCCCGGCCTCTACTGCAGACCGGGACCCTGCTTGGAGCTTACGCTGCACTGAGCTaGTCAGCACCACAGCCGTCA +
Preference number: 4 (lower is better)
Translates to: CPRPAPRPLLQTGTLLGAYAALS*SAPQPS
Trigger: TGACGGCTGTGGTGCTGAGCAGCTCAGTGCAGCGTA...AGCTCCAAGCAGGGTCCCGGTCTGCAGTAGAGGCCGGGGTGCAGGCCGGGGGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp TGCCCCCGGCCTGCACCCCGGCCTCTACTGCAGACCGGGACCCTGCTTGGAGCTGCCGCAATGCGACCATaGGTGTCTGCGTCAAGGTCA +
Preference number: 4 (lower is better)
Translates to: CPRPAPRPLLQTGTLLGAAAMRP*VSASRS
Trigger: TGACCTTGACGCAGACACCCATGGTCGCATTGCGGC...AGCTCCAAGCAGGGTCCCGGTCTGCAGTAGAGGCCGGGGTGCAGGCCGGGGGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp GCTTGTGTTCCTGGGGAGCTTCGTGTAGACGGGAGGGAAGGGACAGGACAGGGCATGTTGGTCGGGTTCTaGGGCGGCTGCGGCAGGCGC +
Preference number: 4 (lower is better)
Translates to: ACVPGELRVDGREGTGQGMLVGF*GGCGRR
Trigger: GCGCCTGCCGCAGCCGCCGCAGAACCCGACCAACAT...GCCCTGTCCTGTCCCTTCCCTCCCGTCTACACGAAGCTCCCCAGGAACACAAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp TGCCCCCGGCCTGCACCCCGGCCTCTACTGCAGACCGGGACCCTGCTTGGAGCTGGGACTGGCTGCAGCTaGTTCAGTTGGATCTGCTGT +
Preference number: 4 (lower is better)
Translates to: CPRPAPRPLLQTGTLLGAGTGCS*FSWICC
Trigger: ACAGCAGATCCAACTGAACCAGCTGCAGCCAGTCCC...AGCTCCAAGCAGGGTCCCGGTCTGCAGTAGAGGCCGGGGTGCAGGCCGGGGGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp AGAGATGAGGTCATCGGCTGTAGACATACACCTAGCGGGAGTCAGGGTGAGCTGAAGCAAGCGGCGCGGTaGGCTGGAGCCCGGGCGCCG +
Preference number: 4 (lower is better)
Translates to: RDEVIGCRHTPSGSQGELKQAAR*AGARAP
Trigger: CGGCGCCCGGGCTCCAGCTCACCGCGCCGCTTGCTT...CAGCTCACCCTGACTCCCGCTAGGTGTATGTCTACAGCCGATGACCTCATCTCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp CCCCCGGCCTGCACCCCGGCCTCTACTGCAGACCGGGACCCTGCTTGGAGCTTGTGGGGTCACCTGCCGTaGAATAATAGGTGTTCCTGG +
Preference number: 4 (lower is better)
Translates to: PPACTPASTADRDPAWSLWGHLP*NNRCSW
Trigger: CCAGGAACACCTATTATTGCACGGCAGGTGACCCCA...CAAGCTCCAAGCAGGGTCCCGGTCTGCAGTAGAGGCCGGGGTGCAGGCCGGGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp TGCCCCCGGCCTGCACCCCGGCCTCTACTGCAGACCGGGACCCTGCTTGGAGCTCAGTTGGATCTGCTGTaGTGTGGTGAGCATGATCCG +
Preference number: 4 (lower is better)
Translates to: CPRPAPRPLLQTGTLLGAQLDLL*CGEHDP
Trigger: CGGATCATGCTCACCACACCACAGCAGATCCAACTG...AGCTCCAAGCAGGGTCCCGGTCTGCAGTAGAGGCCGGGGTGCAGGCCGGGGGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp CCCCCGGCCTGCACCCCGGCCTCTACTGCAGACCGGGACCCTGCTTGGAGCTTGACCGTCGTCTGGGCCTaGGACACTTGCTTAATTATG +
Preference number: 4 (lower is better)
Translates to: PPACTPASTADRDPAWSLTVVWA*DTCLIM
Trigger: CATAATTAAGCAAGTGTCTCAGGCCCAGACGACGGT...CAAGCTCCAAGCAGGGTCCCGGTCTGCAGTAGAGGCCGGGGTGCAGGCCGGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp TGCCCCCGGCCTGCACCCCGGCCTCTACTGCAGACCGGGACCCTGCTTGGAGCTGCAGCCTTTGCTGTGTaGCATGAGACACGTAACTCA +
Preference number: 4 (lower is better)
Translates to: CPRPAPRPLLQTGTLLGAAAFAV*HETRNS
Trigger: TGAGTTACGTGTCTCATGCCACACAGCAAAGGCTGC...AGCTCCAAGCAGGGTCCCGGTCTGCAGTAGAGGCCGGGGTGCAGGCCGGGGGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp GCTTGTGTTCCTGGGGAGCTTCGTGTAGACGGGAGGGAAGGGACAGGACAGGGCTGCTGCTGCTGGCTCTaGTGGATAAAGGCCGCGGAG +
Preference number: 4 (lower is better)
Translates to: ACVPGELRVDGREGTGQGCCCWL*WIKAAE
Trigger: CTCCGCGGCCTTTATCCAGCAGAGCCAGCAGCAGCA...GCCCTGTCCTGTCCCTTCCCTCCCGTCTACACGAAGCTCCCCAGGAACACAAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp GCTTGTGTTCCTGGGGAGCTTCGTGTAGACGGGAGGGAAGGGACAGGACAGGGCGGAGATCTGGACAGGTaGAGCACCTGTGGGGGTTGC +
Preference number: 4 (lower is better)
Translates to: ACVPGELRVDGREGTGQGGDLDR*STCGGC
Trigger: GCAACCCCCACAGGTGCTCCACCTGTCCAGATCTCC...GCCCTGTCCTGTCCCTTCCCTCCCGTCTACACGAAGCTCCCCAGGAACACAAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp GCTTGTGTTCCTGGGGAGCTTCGTGTAGACGGGAGGGAAGGGACAGGACAGGGCCACGAGGACCATTCCTaGGGGCAGCTGGAAGTTCTG +
Preference number: 4 (lower is better)
Translates to: ACVPGELRVDGREGTGQGHEDHS*GQLEVL
Trigger: CAGAACTTCCAGCTGCCCCCAGGAATGGTCCTCGTG...GCCCTGTCCTGTCCCTTCCCTCCCGTCTACACGAAGCTCCCCAGGAACACAAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp AGGTTCTCACTTCCTAGGCTCTCACTTCCTTCCACTTCACAGCTTCCAAACTGCGCGCTGGCCGCCAGCTaGGACTCGAGCGAGCCCACC +
Preference number: 4 (lower is better)
Translates to: RFSLPRLSLPSTSQLPNCALAAS*DSSEPT
Trigger: GGTGGGCTCGCTCGAGTCGCAGCTGGCGGCCAGCGC...GCAGTTTGGAAGCTGTGAAGTGGAAGGAAGTGAGAGCCTAGGAAGTGAGAACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR CAA 72 bp TCGGGTCAGCTGTCCTGTGAGAGCACCCACAGGCCTTaGTGTTCTCTCTGCTGCAGACACGGTTTCTGCCGC +
Preference number: 4 (lower is better)
Translates to: SGQLSCESTHRP*CSLCCRHGFCR
Trigger: GCGGCAGAAACCGTGTCTGCAGCAGAGAGAACACAAAGGCCTGTGGGTGCTCTCACAGGACAGCTGACCCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp TGCCCCCGGCCTGCACCCCGGCCTCTACTGCAGACCGGGACCCTGCTTGGAGCTGCTAGTGAAATCTTCTaGTTCAATTTTCCCATCCAG +
Preference number: 4 (lower is better)
Translates to: CPRPAPRPLLQTGTLLGAASEIF*FNFPIQ
Trigger: CTGGATGGGAAAATTGAAGCAGAAGATTTCACTAGC...AGCTCCAAGCAGGGTCCCGGTCTGCAGTAGAGGCCGGGGTGCAGGCCGGGGGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp AGAGATGAGGTCATCGGCTGTAGACATACACCTAGCGGGAGTCAGGGTGAGCTGGCGACCATGGGTGTCTaGGTCAAGGTCACCTGCGGG +
Preference number: 4 (lower is better)
Translates to: RDEVIGCRHTPSGSQGELATMGV*VKVTCG
Trigger: CCCGCAGGTGACCTTGACGCAGACACCCATGGTCGC...CAGCTCACCCTGACTCCCGCTAGGTGTATGTCTACAGCCGATGACCTCATCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp GCTTGTGTTCCTGGGGAGCTTCGTGTAGACGGGAGGGAAGGGACAGGACAGGGCTTCCAGGTAACACGGTaGGTTTCACCACAGGGACTG +
Preference number: 4 (lower is better)
Translates to: ACVPGELRVDGREGTGQGFQVTR*VSPQGL
Trigger: CAGTCCCTGTGGTGAAACCCACCGTGTTACCTGGAA...GCCCTGTCCTGTCCCTTCCCTCCCGTCTACACGAAGCTCCCCAGGAACACAAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp GCTTGTGTTCCTGGGGAGCTTCGTGTAGACGGGAGGGAAGGGACAGGACAGGGCGGGATCATTAACAACTaGCCATTCTCACTCCGCACG +
Preference number: 4 (lower is better)
Translates to: ACVPGELRVDGREGTGQGGIINN*PFSLRT
Trigger: CGTGCGGAGTGAGAATGGGCAGTTGTTAATGATCCC...GCCCTGTCCTGTCCCTTCCCTCCCGTCTACACGAAGCTCCCCAGGAACACAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp GCTTGTGTTCCTGGGGAGCTTCGTGTAGACGGGAGGGAAGGGACAGGACAGGGCTGTGCCAGCTCCTGCTaGTGCATCTCTTTTGCTTTC +
Preference number: 4 (lower is better)
Translates to: ACVPGELRVDGREGTGQGCASSC*CISFAF
Trigger: GAAAGCAAAAGAGATGCAGCAGCAGGAGCTGGCACA...GCCCTGTCCTGTCCCTTCCCTCCCGTCTACACGAAGCTCCCCAGGAACACAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp AGAGATGAGGTCATCGGCTGTAGACATACACCTAGCGGGAGTCAGGGTGAGCTGATCACCTGTGTGGGCTaGGTGAGGCTGATGACCGGG +
Preference number: 4 (lower is better)
Translates to: RDEVIGCRHTPSGSQGELITCVG*VRLMTG
Trigger: CCCGGTCATCAGCCTCACGCAGCCCACACAGGTGAT...CAGCTCACCCTGACTCCCGCTAGGTGTATGTCTACAGCCGATGACCTCATCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp AAGCGCTTCCATCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCGGTGGTGGGCCGCGCTaGCCGCCAGCTGCGACTCGA +
Preference number: 4 (lower is better)
Translates to: KRFHQSLNMACLARRPLSGGGPR*PPAATR
Trigger: TCGAGTCGCAGCTGGCGGCCAGCGCGGCCCACCACC...GCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGATGGAAGCGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp CCTTCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGGCGCTGGCCGCCAGCTaGGACTCGAGCGAGCCCACC +
Preference number: 4 (lower is better)
Translates to: PSTSQLPNCSKSIVFVQVALAAS*DSSEPT
Trigger: GGTGGGCTCGCTCGAGTCGCAGCTGGCGGCCAGCGC...CACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp TCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCCGAGGATGAGCATGTTGGTCGGGTTCTaGGGCGGCTGCGGCAGGCGC +
Preference number: 4 (lower is better)
Translates to: SVFKYGLFGKKATQPRMSMLVGF*GGCGRR
Trigger: GCGCCTGCCGCAGCCGCCGCAGAACCCGACCAACAT...GCTCATCCTCGGCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp GCTTGTGTTCCTGGGGAGCTTCGTGTAGACGGGAGGGAAGGGACAGGACAGGGCGTAGTTGGGGTCACCTaGCGTGCAATAATAGGTGTT +
Preference number: 4 (lower is better)
Translates to: ACVPGELRVDGREGTGQGVVGVT*RAIIGV
Trigger: AACACCTATTATTGCACGGCAGGTGACCCCAACTAC...GCCCTGTCCTGTCCCTTCCCTCCCGTCTACACGAAGCTCCCCAGGAACACAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR CAA 72 bp CTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTaGTACAGGTGCTGCCCCCGGCCTGCACCCCGGCCT +
Preference number: 4 (lower is better)
Translates to: LHSFQTAANQLC*YRCCPRPAPRP
Trigger: AGGCCGGGGTGCAGGCCGGGGGCAGCACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp TACACCAACCATTTCCAACACTTGATCCACACTGAGAAACAGTCTGTTGTTGATAAGCAAGCGGCGCGGTaGGCTGGAGCCCGGGCGCCG +
Preference number: 4 (lower is better)
Translates to: YTNHFQHLIHTEKQSVVDKQAAR*AGARAP
Trigger: CGGCGCCCGGGCTCCAGCTCACCGCGCCGCTTGCTT...ATCAACAACAGACTGTTTCTCAGTGTGGATCAAGTGTTGGAAATGGTTGGTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp TCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCCGAGGATGAGCGGTGCCATGGTACTCTaGGGCTGGGCCTGGGCATGG +
Preference number: 4 (lower is better)
Translates to: SVFKYGLFGKKATQPRMSGAMVL*GWAWAW
Trigger: CCATGCCCAGGCCCAGCCTCAGAGTACCATGGCACC...GCTCATCCTCGGCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp AAGCGCTTCCATCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCGGGGCTGGAGGGCGCTaGTCACCGAGGCAGCTGTCT +
Preference number: 4 (lower is better)
Translates to: KRFHQSLNMACLARRPLSGAGGR*SPRQLS
Trigger: AGACAGCTGCCTCGGTGACCAGCGCCCTCCAGCCCC...GCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGATGGAAGCGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp AGAGATGAGGTCATCGGCTGTAGACATACACCTAGCGGGAGTCAGGGTGAGCTGCTGGGTCTTCTTGTCTaGATCGAGACTTCGCTGCCC +
Preference number: 4 (lower is better)
Translates to: RDEVIGCRHTPSGSQGELLGLLV*IETSLP
Trigger: GGGCAGCGAAGTCTCGATCCAGACAAGAAGACCCAG...CAGCTCACCCTGACTCCCGCTAGGTGTATGTCTACAGCCGATGACCTCATCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp TCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCCGAGGATGAGCCCACCCAGAACCAGCTaGGGCTGTACCCCGGGAGAT +
Preference number: 4 (lower is better)
Translates to: SVFKYGLFGKKATQPRMSPPRTS*GCTPGD
Trigger: ATCTCCCGGGGTACAGCCTCAGCTGGTTCTGGGTGG...GCTCATCCTCGGCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp AGTCTAAAAAGTCAGCTTGCTTCGCCAACTGACTGCTACAACAGAAAGGAAGAGCGGCTCCGGCCGGGCTaGCGCTCACAACATGGTTCC +
Preference number: 4 (lower is better)
Translates to: SLKSQLASPTDCYNRKEERLRPG*RSQHGS
Trigger: GGAACCATGTTGTGAGCGGCAGCCCGGCCGGAGCCG...CTCTTCCTTTCTGTTGTAGCAGTCAGTTGGCGAAGCAAGCTGACTTTTTAGACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp AAGCGCTTCCATCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCAGTGCAGTCGTGGCCTaGGAAGCAGGCGGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: KRFHQSLNMACLARRPLSSAVVA*EAGGCC
Trigger: GCAGCAGCCGCCTGCTTCGCAGGCCACGACTGCACT...GCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGATGGAAGCGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp AGAGATGAGGTCATCGGCTGTAGACATACACCTAGCGGGAGTCAGGGTGAGCTGGCCAGCTCCTGCTGCTaGATCTCTTTTGCTTTCTGC +
Preference number: 4 (lower is better)
Translates to: RDEVIGCRHTPSGSQGELASSCC*ISFAFC
Trigger: GCAGAAAGCAAAAGAGATGCAGCAGCAGGAGCTGGC...CAGCTCACCCTGACTCCCGCTAGGTGTATGTCTACAGCCGATGACCTCATCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp AGGTTCTCACTTCCTAGGCTCTCACTTCCTTCCACTTCACAGCTTCCAAACTGCCCCGATCGCTGCCAGTaGAGTGAGGTTGGCATCTCG +
Preference number: 4 (lower is better)
Translates to: RFSLPRLSLPSTSQLPNCPDRCQ*SEVGIS
Trigger: CGAGATGCCAACCTCACTGCACTGGCAGCGATCGGG...GCAGTTTGGAAGCTGTGAAGTGGAAGGAAGTGAGAGCCTAGGAAGTGAGAACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp AAAGGAAGAGATGAGGTCATCGGCTGTAGACATACACCTAGCGGGAGTCAGGGTGCCGCAATGCGACCATaGGTGTCTGCGTCAAGGTCA +
Preference number: 4 (lower is better)
Translates to: KGRDEVIGCRHTPSGSQGAAMRP*VSASRS
Trigger: TGACCTTGACGCAGACACCCATGGTCGCATTGCGGC...ACCCTGACTCCCGCTAGGTGTATGTCTACAGCCGATGACCTCATCTCTTCCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR CAA 72 bp CTTCCACTTCACAGCTTCCAAACTGCAGCAAATCAATaGTGTTTGTACAGGTGCTGCCCCCGGCCTGCACCC +
Preference number: 4 (lower is better)
Translates to: LPLHSFQTAANQ*CLYRCCPRPAP
Trigger: GGGTGCAGGCCGGGGGCAGCACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp TCAGTTCACACGTGCGAATTGAAGTCTAACATGAGAATCCACACGGAGAAAGCCAGCACCTGTGGGGGTTaGAGGACGGGGTGCCATGGT +
Preference number: 4 (lower is better)
Translates to: SVHTCELKSNMRIHTEKASTCGG*RTGCHG
Trigger: ACCATGGCACCCCGTCCTGCAACCCCCACAGGTGCT...GGCTTTCTCCGTGTGGATTCTCATGTTAGACTTCAATTCGCACGTGTGAACTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp CCTTCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGAGTGCAGTCGTGGCCTaGGAAGCAGGCGGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: PSTSQLPNCSKSIVFVQVSAVVA*EAGGCC
Trigger: GCAGCAGCCGCCTGCTTCGCAGGCCACGACTGCACT...CACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp AAAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCAGAAACGGTGGTGGGCCGCGCTaGCCGCCAGCTGCGACTCGA +
Preference number: 4 (lower is better)
Translates to: KRRNLQIYKNVRKHPIRNGGGPR*PPAATR
Trigger: TCGAGTCGCAGCTGGCGGCCAGCGCGGCCCACCACC...GTTTCTGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp AAGCGCTTCCATCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCAGCATGATCCGGTTGTaGGGCTGCCGCAATGCGACC +
Preference number: 4 (lower is better)
Translates to: KRFHQSLNMACLARRPLSSMIRL*GCRNAT
Trigger: GGTCGCATTGCGGCAGCCTCACAACCGGATCATGCT...GCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGATGGAAGCGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp TACACCAACCATTTCCAACACTTGATCCACACTGAGAAACAGTCTGTTGTTGATCTCCCATTCAAAGTTTaGGCGGCGCCGGGGCCGGGC +
Preference number: 4 (lower is better)
Translates to: YTNHFQHLIHTEKQSVVDLPFKV*AAPGPG
Trigger: GCCCGGCCCCGGCGCCGCGCAAACTTTGAATGGGAG...ATCAACAACAGACTGTTTCTCAGTGTGGATCAAGTGTTGGAAATGGTTGGTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp AAAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCAGAAACGCCTGGGCATGGGCCTaGATCTGGGCCAGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: KRRNLQIYKNVRKHPIRNAWAWA*IWARAC
Trigger: GCAGGCCCTGGCCCAGATGCAGGCCCATGCCCAGGC...GTTTCTGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp GTTACAAAAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCGCCTGGGCATGGGCCTaGATCTGGGCCAGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: VTKRRNLQIYKNVRKHPIAWAWA*IWARAC
Trigger: GCAGGCCCTGGCCCAGATGCAGGCCCATGCCCAGGC...GATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTTTGTAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp AGGTTCTCACTTCCTAGGCTCTCACTTCCTTCCACTTCACAGCTTCCAAACTGCTCGTTGTCGCATCTGTaGCAGCTCCTGCTGCTGCAT +
Preference number: 4 (lower is better)
Translates to: RFSLPRLSLPSTSQLPNCSLSHL*QLLLLH
Trigger: ATGCAGCAGCAGGAGCTGGCACAGATGCGACAACGA...GCAGTTTGGAAGCTGTGAAGTGGAAGGAAGTGAGAGCCTAGGAAGTGAGAACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp AAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCAGAAACGCTGCCGCTCACAACATaGTTCCCGAGCGCGCCGGCG +
Preference number: 4 (lower is better)
Translates to: KGVICKYIKTSASIPSETLPLTT*FPSAPA
Trigger: CGCCGGCGCGCTCGGGAACCATGTTGTGAGCGGCAG...CGTTTCTGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp TACACCAACCATTTCCAACACTTGATCCACACTGAGAAACAGTCTGTTGTTGATCTGCCGCTCACAACATaGTTCCCGAGCGCGCCGGCG +
Preference number: 4 (lower is better)
Translates to: YTNHFQHLIHTEKQSVVDLPLTT*FPSAPA
Trigger: CGCCGGCGCGCTCGGGAACCATGTTGTGAGCGGCAG...ATCAACAACAGACTGTTTCTCAGTGTGGATCAAGTGTTGGAAATGGTTGGTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp TCAGTTCACACGTGCGAATTGAAGTCTAACATGAGAATCCACACGGAGAAAGCCGGAGATCTGGACAGGTaGAGCACCTGTGGGGGTTGC +
Preference number: 4 (lower is better)
Translates to: SVHTCELKSNMRIHTEKAGDLDR*STCGGC
Trigger: GCAACCCCCACAGGTGCTCCACCTGTCCAGATCTCC...GGCTTTCTCCGTGTGGATTCTCATGTTAGACTTCAATTCGCACGTGTGAACTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp TCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCCGAGGATGAGCCTGGAGCCTGCACAGTaGAGATCTGGACAGGTGGAG +
Preference number: 4 (lower is better)
Translates to: SVFKYGLFGKKATQPRMSLEPAQ*RSGQVE
Trigger: CTCCACCTGTCCAGATCTCCACTGTGCAGGCTCCAG...GCTCATCCTCGGCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp TACACCAACCATTTCCAACACTTGATCCACACTGAGAAACAGTCTGTTGTTGATGGGGCTGGAGGGCGCTaGTCACCGAGGCAGCTGTCT +
Preference number: 4 (lower is better)
Translates to: YTNHFQHLIHTEKQSVVDGAGGR*SPRQLS
Trigger: AGACAGCTGCCTCGGTGACCAGCGCCCTCCAGCCCC...ATCAACAACAGACTGTTTCTCAGTGTGGATCAAGTGTTGGAAATGGTTGGTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp TACACCAACCATTTCCAACACTTGATCCACACTGAGAAACAGTCTGTTGTTGATGGTGCCATGGTACTCTaGGGCTGGGCCTGGGCATGG +
Preference number: 4 (lower is better)
Translates to: YTNHFQHLIHTEKQSVVDGAMVL*GWAWAW
Trigger: CCATGCCCAGGCCCAGCCTCAGAGTACCATGGCACC...ATCAACAACAGACTGTTTCTCAGTGTGGATCAAGTGTTGGAAATGGTTGGTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp AGTCTAAAAAGTCAGCTTGCTTCGCCAACTGACTGCTACAACAGAAAGGAAGAGAGCATGATCCGGTTGTaGGGCTGCCGCAATGCGACC +
Preference number: 4 (lower is better)
Translates to: SLKSQLASPTDCYNRKEESMIRL*GCRNAT
Trigger: GGTCGCATTGCGGCAGCCTCACAACCGGATCATGCT...CTCTTCCTTTCTGTTGTAGCAGTCAGTTGGCGAAGCAAGCTGACTTTTTAGACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp AAAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCAGAAACCGGCTCCGGCCGGGCTaGCGCTCACAACATGGTTCC +
Preference number: 4 (lower is better)
Translates to: KRRNLQIYKNVRKHPIRNRLRPG*RSQHGS
Trigger: GGAACCATGTTGTGAGCGGCAGCCCGGCCGGAGCCG...GTTTCTGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp AGTCTAAAAAGTCAGCTTGCTTCGCCAACTGACTGCTACAACAGAAAGGAAGAGGAAGCAGGCGGCTGCTaGTGCTGGCTCTGCTGGATA +
Preference number: 4 (lower is better)
Translates to: SLKSQLASPTDCYNRKEEEAGGC*CWLCWI
Trigger: TATCCAGCAGAGCCAGCAGCAGCAGCCGCCTGCTTC...CTCTTCCTTTCTGTTGTAGCAGTCAGTTGGCGAAGCAAGCTGACTTTTTAGACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp CCTTCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGGTGAGGCTGCCGCAATaGGACCATGGGTGTCTGCGT +
Preference number: 4 (lower is better)
Translates to: PSTSQLPNCSKSIVFVQVVRLPQ*DHGCLR
Trigger: ACGCAGACACCCATGGTCGCATTGCGGCAGCCTCAC...CACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp TCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGCTGGTGAGGCTGCCGCAATaGGACCATGGGTGTCTGCGT +
Preference number: 4 (lower is better)
Translates to: STSQLPNCSKSIVFVQVLVRLPQ*DHGCLR
Trigger: ACGCAGACACCCATGGTCGCATTGCGGCAGCCTCAC...CAGCACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp AAAGGAAGAGATGAGGTCATCGGCTGTAGACATACACCTAGCGGGAGTCAGGGTTGGTTCAGTTGGATCTaGTGTGGTGTGGTGAGCATG +
Preference number: 4 (lower is better)
Translates to: KGRDEVIGCRHTPSGSQGWFSWI*CGVVSM
Trigger: CATGCTCACCACACCACAGCAGATCCAACTGAACCA...ACCCTGACTCCCGCTAGGTGTATGTCTACAGCCGATGACCTCATCTCTTCCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp TCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCCGAGGATGAGCGGCAGCAGCTGCTTGTaGAGATACAGTAGACAGGGC +
Preference number: 4 (lower is better)
Translates to: SVFKYGLFGKKATQPRMSGSSCL*RYSRQG
Trigger: GCCCTGTCTACTGTATCTGCACAAGCAGCTGCTGCC...GCTCATCCTCGGCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp TCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCCGAGGATGAGCTCGTTGTCGCATCTGTaGCAGCTCCTGCTGCTGCAT +
Preference number: 4 (lower is better)
Translates to: SVFKYGLFGKKATQPRMSSLSHL*QLLLLH
Trigger: ATGCAGCAGCAGGAGCTGGCACAGATGCGACAACGA...GCTCATCCTCGGCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp CCTTCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGCCCGATCGCTGCCAGTaGAGTGAGGTTGGCATCTCG +
Preference number: 4 (lower is better)
Translates to: PSTSQLPNCSKSIVFVQVPDRCQ*SEVGIS
Trigger: CGAGATGCCAACCTCACTGCACTGGCAGCGATCGGG...CACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp TACACCAACCATTTCCAACACTTGATCCACACTGAGAAACAGTCTGTTGTTGATCCTGGGCCCGATCGCTaGCAGTGCAGTGAGGTTGGC +
Preference number: 4 (lower is better)
Translates to: YTNHFQHLIHTEKQSVVDPGPDR*QCSEVG
Trigger: GCCAACCTCACTGCACTGGCAGCGATCGGGCCCAGG...ATCAACAACAGACTGTTTCTCAGTGTGGATCAAGTGTTGGAAATGGTTGGTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp AAGCGCTTCCATCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCCTGGAGCCTGCACAGTaGAGATCTGGACAGGTGGAG +
Preference number: 4 (lower is better)
Translates to: KRFHQSLNMACLARRPLSLEPAQ*RSGQVE
Trigger: CTCCACCTGTCCAGATCTCCACTGTGCAGGCTCCAG...GCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGATGGAAGCGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp TCAGTTCACACGTGCGAATTGAAGTCTAACATGAGAATCCACACGGAGAAAGCCTGCTGCTGGCTCTGCTaGATAAAGGCCGCGGAGTCT +
Preference number: 4 (lower is better)
Translates to: SVHTCELKSNMRIHTEKACCWLC*IKAAES
Trigger: AGACTCCGCGGCCTTTATCCAGCAGAGCCAGCAGCA...GGCTTTCTCCGTGTGGATTCTCATGTTAGACTTCAATTCGCACGTGTGAACTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp AGGTTCTCACTTCCTAGGCTCTCACTTCCTTCCACTTCACAGCTTCCAAACTGCTGCAGCTGGTTCAGTTaGATCTGCTGTGGTGTGGTG +
Preference number: 4 (lower is better)
Translates to: RFSLPRLSLPSTSQLPNCCSWFS*ICCGVV
Trigger: CACCACACCACAGCAGATCCAACTGAACCAGCTGCA...GCAGTTTGGAAGCTGTGAAGTGGAAGGAAGTGAGAGCCTAGGAAGTGAGAACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp TCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGCTGCGTCCACCTCGCTGTTaGAGAAGACCTCGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: STSQLPNCSKSIVFVQVLRPPRC*RRPRPA
Trigger: TGCTGGACGAGGTCTTCTTCAACAGCGAGGTGGACG...CAGCACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp AGTCTAAAAAGTCAGCTTGCTTCGCCAACTGACTGCTACAACAGAAAGGAAGAGTGGGCCAGGGCCTGCTaGGGGATCATTAACAACTGC +
Preference number: 4 (lower is better)
Translates to: SLKSQLASPTDCYNRKEEWARAC*GIINNC
Trigger: GCAGTTGTTAATGATCCCTCAGCAGGCCCTGGCCCA...CTCTTCCTTTCTGTTGTAGCAGTCAGTTGGCGAAGCAAGCTGACTTTTTAGACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp AAAGGAAGAGATGAGGTCATCGGCTGTAGACATACACCTAGCGGGAGTCAGGGTGTTCACTCCAGCCATTaGCGCAACATCATTGATGTC +
Preference number: 4 (lower is better)
Translates to: KGRDEVIGCRHTPSGSQGVHSSH*RNIIDV
Trigger: GACATCAATGATGTTGCGTCAATGGCTGGAGTGAAC...ACCCTGACTCCCGCTAGGTGTATGTCTACAGCCGATGACCTCATCTCTTCCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp AAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCAGAAACGCCAGGCTTCGGGGGCTaGTGGATCACCAGTGGTGTG +
Preference number: 4 (lower is better)
Translates to: KGVICKYIKTSASIPSETPGFGG*WITSGV
Trigger: CACACCACTGGTGATCCAGCAGCCCCCGAAGCCTGG...CGTTTCTGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000041618.13
CDS-3UTR CCA 90 bp CCTTCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGGGAAGTTCTGGATGTTaGTCGGGTTCTGCGGCGGCT +
Preference number: 4 (lower is better)
Translates to: PSTSQLPNCSKSIVFVQVGSSGC*SGSAAA
Trigger: AGCCGCCGCAGAACCCGACCAACATCCAGAACTTCC...CACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp TCAGTTCACACGTGCGAATTGAAGTCTAACATGAGAATCCACACGGAGAAAGCCTGCACAGTGGAGATCTaGACAGGTGGAGCACCTGTG +
Preference number: 4 (lower is better)
Translates to: SVHTCELKSNMRIHTEKACTVEI*TGGAPV
Trigger: CACAGGTGCTCCACCTGTCCAGATCTCCACTGTGCA...GGCTTTCTCCGTGTGGATTCTCATGTTAGACTTCAATTCGCACGTGTGAACTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp CTTCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGCTGCTGCTGGCTCTGCTaGATAAAGGCCGCGGAGTCT +
Preference number: 4 (lower is better)
Translates to: LPLHSFQTAANQLCLYRCCCWLC*IKAAES
Trigger: AGACTCCGCGGCCTTTATCCAGCAGAGCCAGCAGCA...GCACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp AAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCAGAAACGCTGCTGGATCACCAGTaGTGTGGGCGGCGCCTGCTT +
Preference number: 4 (lower is better)
Translates to: KGVICKYIKTSASIPSETLLDHQ*CGRRLL
Trigger: AAGCAGGCGCCGCCCACACCACTGGTGATCCAGCAG...CGTTTCTGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041618.13
CDS-3UTR CCA 90 bp TCAGTTCACACGTGCGAATTGAAGTCTAACATGAGAATCCACACGGAGAAAGCCCTTTCCTCTTTTTCCTaGGCCCGATCGCTGCCAGTG +
Preference number: 4 (lower is better)
Translates to: SVHTCELKSNMRIHTEKALSSFS*ARSLPV
Trigger: CACTGGCAGCGATCGGGCCCAGGAAAAAGAGGAAAG...GGCTTTCTCCGTGTGGATTCTCATGTTAGACTTCAATTCGCACGTGTGAACTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp GTTACAAAAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCCCACCCAGAACCAGCTaGGGCTGTACCCCGGGAGAT +
Preference number: 4 (lower is better)
Translates to: VTKRRNLQIYKNVRKHPIPPRTS*GCTPGD
Trigger: ATCTCCCGGGGTACAGCCTCAGCTGGTTCTGGGTGG...GATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTTTGTAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp AGGTTCTCACTTCCTAGGCTCTCACTTCCTTCCACTTCACAGCTTCCAAACTGCAAGGTAAGGCTGAGGTaGAGAGTTCAGTTCTCGGTA +
Preference number: 4 (lower is better)
Translates to: RFSLPRLSLPSTSQLPNCKVRLR*RVQFSV
Trigger: TACCGAGAACTGAACTCTTCACCTCAGCCTTACCTT...GCAGTTTGGAAGCTGTGAAGTGGAAGGAAGTGAGAGCCTAGGAAGTGAGAACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp TCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGCTGCGGACATCACTCGCTTaGTCGTATCTGTCGTCGTCC +
Preference number: 4 (lower is better)
Translates to: STSQLPNCSKSIVFVQVLRTSLA*SYLSSS
Trigger: GGACGACGACAGATACGAGCAAGCGAGTGATGTCCG...CAGCACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp TCAGTTCACACGTGCGAATTGAAGTCTAACATGAGAATCCACACGGAGAAAGCCGCCAGCTCCTGCTGCTaGATCTCTTTTGCTTTCTGC +
Preference number: 4 (lower is better)
Translates to: SVHTCELKSNMRIHTEKAASSCC*ISFAFC
Trigger: GCAGAAAGCAAAAGAGATGCAGCAGCAGGAGCTGGC...GGCTTTCTCCGTGTGGATTCTCATGTTAGACTTCAATTCGCACGTGTGAACTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp CCTTCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGACCCGCGTGATTCTTTaGCGTGTGAACTGTCTGGGG +
Preference number: 4 (lower is better)
Translates to: PSTSQLPNCSKSIVFVQVTRVIL*RVNCLG
Trigger: CCCCAGACAGTTCACACGGCAAAGAATCACGCGGGT...CACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp CCTTCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGGGCAGCTGGAAGTTCTaGATGTTGGTCGGGTTCTGC +
Preference number: 4 (lower is better)
Translates to: PSTSQLPNCSKSIVFVQVGSWKF*MLVGFC
Trigger: GCAGAACCCGACCAACATCCAGAACTTCCAGCTGCC...CACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp CCTTCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGTGCACAGTGGAGATCTaGACAGGTGGAGCACCTGTG +
Preference number: 4 (lower is better)
Translates to: PSTSQLPNCSKSIVFVQVCTVEI*TGGAPV
Trigger: CACAGGTGCTCCACCTGTCCAGATCTCCACTGTGCA...CACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp AGTCTAAAAAGTCAGCTTGCTTCGCCAACTGACTGCTACAACAGAAAGGAAGAGGGGACTGGCTGCAGCTaGTTCAGTTGGATCTGCTGT +
Preference number: 4 (lower is better)
Translates to: SLKSQLASPTDCYNRKEEGTGCS*FSWICC
Trigger: ACAGCAGATCCAACTGAACCAGCTGCAGCCAGTCCC...CTCTTCCTTTCTGTTGTAGCAGTCAGTTGGCGAAGCAAGCTGACTTTTTAGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp AGTCTAAAAAGTCAGCTTGCTTCGCCAACTGACTGCTACAACAGAAAGGAAGAGCTGGGTCTTCTTGTCTaGATCGAGACTTCGCTGCCC +
Preference number: 4 (lower is better)
Translates to: SLKSQLASPTDCYNRKEELGLLV*IETSLP
Trigger: GGGCAGCGAAGTCTCGATCCAGACAAGAAGACCCAG...CTCTTCCTTTCTGTTGTAGCAGTCAGTTGGCGAAGCAAGCTGACTTTTTAGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp AAGCGCTTCCATCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCACCGTCGTCTGGGCCTaGGACACTTGCTTAATTATG +
Preference number: 4 (lower is better)
Translates to: KRFHQSLNMACLARRPLSTVVWA*DTCLIM
Trigger: CATAATTAAGCAAGTGTCTCAGGCCCAGACGACGGT...GCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGATGGAAGCGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp AGGTTCTCACTTCCTAGGCTCTCACTTCCTTCCACTTCACAGCTTCCAAACTGCTTGACGCAACATCATTaGTGTCATCATCATCCCGGA +
Preference number: 4 (lower is better)
Translates to: RFSLPRLSLPSTSQLPNCLTQHH*CHHHPG
Trigger: TCCGGGATGATGATGACATCAATGATGTTGCGTCAA...GCAGTTTGGAAGCTGTGAAGTGGAAGGAAGTGAGAGCCTAGGAAGTGAGAACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp AAAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCAGAAACTGCTGCTGCTGGCTCTaGTGGATAAAGGCCGCGGAG +
Preference number: 4 (lower is better)
Translates to: KRRNLQIYKNVRKHPIRNCCCWL*WIKAAE
Trigger: CTCCGCGGCCTTTATCCAGCAGAGCCAGCAGCAGCA...GTTTCTGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp AAAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCAGAAACGAAGCAGGCGGCTGCTaGTGCTGGCTCTGCTGGATA +
Preference number: 4 (lower is better)
Translates to: KRRNLQIYKNVRKHPIRNEAGGC*CWLCWI
Trigger: TATCCAGCAGAGCCAGCAGCAGCAGCCGCCTGCTTC...GTTTCTGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp AAAGGAAGAGATGAGGTCATCGGCTGTAGACATACACCTAGCGGGAGTCAGGGTTGCTTCAACCTTAATTaGTCTGGGTCTTCTTGTCTG +
Preference number: 4 (lower is better)
Translates to: KGRDEVIGCRHTPSGSQGCFNLN*SGSSCL
Trigger: CAGACAAGAAGACCCAGAGCAATTAAGGTTGAAGCA...ACCCTGACTCCCGCTAGGTGTATGTCTACAGCCGATGACCTCATCTCTTCCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp TCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGCTGATTCCTGGGGGCAGCTaGAAGTTCTGGATGTTGGTC +
Preference number: 4 (lower is better)
Translates to: STSQLPNCSKSIVFVQVLIPGGS*KFWMLV
Trigger: GACCAACATCCAGAACTTCCAGCTGCCCCCAGGAAT...CAGCACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp AGTCTAAAAAGTCAGCTTGCTTCGCCAACTGACTGCTACAACAGAAAGGAAGAGATTCCTGGGGGCAGCTaGAAGTTCTGGATGTTGGTC +
Preference number: 4 (lower is better)
Translates to: SLKSQLASPTDCYNRKEEIPGGS*KFWMLV
Trigger: GACCAACATCCAGAACTTCCAGCTGCCCCCAGGAAT...CTCTTCCTTTCTGTTGTAGCAGTCAGTTGGCGAAGCAAGCTGACTTTTTAGACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp TACACCAACCATTTCCAACACTTGATCCACACTGAGAAACAGTCTGTTGTTGATCACGAGGACCATTCCTaGGGGCAGCTGGAAGTTCTG +
Preference number: 4 (lower is better)
Translates to: YTNHFQHLIHTEKQSVVDHEDHS*GQLEVL
Trigger: CAGAACTTCCAGCTGCCCCCAGGAATGGTCCTCGTG...ATCAACAACAGACTGTTTCTCAGTGTGGATCAAGTGTTGGAAATGGTTGGTGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp CTTCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGCCAGTTGGATCTGCTGTaGTGTGGTGAGCATGATCCG +
Preference number: 4 (lower is better)
Translates to: LPLHSFQTAANQLCLYRCQLDLL*CGEHDP
Trigger: CGGATCATGCTCACCACACCACAGCAGATCCAACTG...GCACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp CTTCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGCTGCAGCTGGTTCAGTTaGATCTGCTGTGGTGTGGTG +
Preference number: 4 (lower is better)
Translates to: LPLHSFQTAANQLCLYRCCSWFS*ICCGVV
Trigger: CACCACACCACAGCAGATCCAACTGAACCAGCTGCA...GCACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp AGTCTAAAAAGTCAGCTTGCTTCGCCAACTGACTGCTACAACAGAAAGGAAGAGTTCCAGGTAACACGGTaGGTTTCACCACAGGGACTG +
Preference number: 4 (lower is better)
Translates to: SLKSQLASPTDCYNRKEEFQVTR*VSPQGL
Trigger: CAGTCCCTGTGGTGAAACCCACCGTGTTACCTGGAA...CTCTTCCTTTCTGTTGTAGCAGTCAGTTGGCGAAGCAAGCTGACTTTTTAGACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp AAGCGCTTCCATCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCAAGGTAAGGCTGAGGTaGAGAGTTCAGTTCTCGGTA +
Preference number: 4 (lower is better)
Translates to: KRFHQSLNMACLARRPLSKVRLR*RVQFSV
Trigger: TACCGAGAACTGAACTCTTCACCTCAGCCTTACCTT...GCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGATGGAAGCGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp AAAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCAGAAACTACGCTGCACTGAGCTaGTCAGCACCACAGCCGTCA +
Preference number: 4 (lower is better)
Translates to: KRRNLQIYKNVRKHPIRNYAALS*SAPQPS
Trigger: TGACGGCTGTGGTGCTGAGCAGCTCAGTGCAGCGTA...GTTTCTGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp AAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCAGAAACGGGCAGCAGCTGCTTGTaGAGATACAGTAGACAGGGC +
Preference number: 4 (lower is better)
Translates to: KGVICKYIKTSASIPSETGSSCL*RYSRQG
Trigger: GCCCTGTCTACTGTATCTGCACAAGCAGCTGCTGCC...CGTTTCTGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp TACACCAACCATTTCCAACACTTGATCCACACTGAGAAACAGTCTGTTGTTGATACCCGCGTGATTCTTTaGCGTGTGAACTGTCTGGGG +
Preference number: 4 (lower is better)
Translates to: YTNHFQHLIHTEKQSVVDTRVIL*RVNCLG
Trigger: CCCCAGACAGTTCACACGGCAAAGAATCACGCGGGT...ATCAACAACAGACTGTTTCTCAGTGTGGATCAAGTGTTGGAAATGGTTGGTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR CAA 72 bp TACAAAGAAGGGGCTTTGCTCTGGACGCCTGTAAGGTaGGCCACAGCTTGCATACAGTCTCTTAGCAAAATA +
Preference number: 4 (lower is better)
Translates to: YKEGALLWTPVR*ATACIQSLSKI
Trigger: TATTTTGCTAAGAGACTGTATGCAAGCTGTGGCCAACCTTACAGGCGTCCAGAGCAAAGCCCCTTCTTTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp AGTCTAAAAAGTCAGCTTGCTTCGCCAACTGACTGCTACAACAGAAAGGAAGAGGTTGTTCAAAGAATTTaGGCTGAGCCCGGACATCAC +
Preference number: 4 (lower is better)
Translates to: SLKSQLASPTDCYNRKEEVVQRI*AEPGHH
Trigger: GTGATGTCCGGGCTCAGCTCAAATTCTTTGAACAAC...CTCTTCCTTTCTGTTGTAGCAGTCAGTTGGCGAAGCAAGCTGACTTTTTAGACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp TCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGCTGGTTGTTCAAAGAATTTaGGCTGAGCCCGGACATCAC +
Preference number: 4 (lower is better)
Translates to: STSQLPNCSKSIVFVQVLVVQRI*AEPGHH
Trigger: GTGATGTCCGGGCTCAGCTCAAATTCTTTGAACAAC...CAGCACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp TCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGCTGTTTGTAGAGCAACAGTaGATGGCTTGTCTCACGCTC +
Preference number: 4 (lower is better)
Translates to: STSQLPNCSKSIVFVQVLFVEQQ*MACLTL
Trigger: GAGCGTGAGACAAGCCATTCACTGTTGCTCTACAAA...CAGCACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp AAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCAGAAACGTGGGGTCACCTGCCGTaGAATAATAGGTGTTCCTGG +
Preference number: 4 (lower is better)
Translates to: KGVICKYIKTSASIPSETWGHLP*NNRCSW
Trigger: CCAGGAACACCTATTATTGCACGGCAGGTGACCCCA...CGTTTCTGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp GTTACAAAAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCCGGACATCACTCGCTTaGTCGTATCTGTCGTCGTCC +
Preference number: 4 (lower is better)
Translates to: VTKRRNLQIYKNVRKHPIRTSLA*SYLSSS
Trigger: GGACGACGACAGATACGAGCAAGCGAGTGATGTCCG...GATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTTTGTAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp GTTACAAAAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCGGCAGCTGGAAGTTCTaGATGTTGGTCGGGTTCTGC +
Preference number: 4 (lower is better)
Translates to: VTKRRNLQIYKNVRKHPIGSWKF*MLVGFC
Trigger: GCAGAACCCGACCAACATCCAGAACTTCCAGCTGCC...GATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTTTGTAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp TACACCAACCATTTCCAACACTTGATCCACACTGAGAAACAGTCTGTTGTTGATCTGTCTGAACAGCTGTaGCTGTTCCAAGTGAGGCTG +
Preference number: 4 (lower is better)
Translates to: YTNHFQHLIHTEKQSVVDLSEQL*LFQVRL
Trigger: CAGCCTCACTTGGAACAGCCACAGCTGTTCAGACAG...ATCAACAACAGACTGTTTCTCAGTGTGGATCAAGTGTTGGAAATGGTTGGTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp AAAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCAGAAACCTTTCCTCTTTTTCCTaGGCCCGATCGCTGCCAGTG +
Preference number: 4 (lower is better)
Translates to: KRRNLQIYKNVRKHPIRNLSSFS*ARSLPV
Trigger: CACTGGCAGCGATCGGGCCCAGGAAAAAGAGGAAAG...GTTTCTGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp TCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGCTGTTGACGCAACATCATTaGTGTCATCATCATCCCGGA +
Preference number: 4 (lower is better)
Translates to: STSQLPNCSKSIVFVQVLLTQHH*CHHHPG
Trigger: TCCGGGATGATGATGACATCAATGATGTTGCGTCAA...CAGCACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp TACACCAACCATTTCCAACACTTGATCCACACTGAGAAACAGTCTGTTGTTGATGGGATCATTAACAACTaGCCATTCTCACTCCGCACG +
Preference number: 4 (lower is better)
Translates to: YTNHFQHLIHTEKQSVVDGIINN*PFSLRT
Trigger: CGTGCGGAGTGAGAATGGGCAGTTGTTAATGATCCC...ATCAACAACAGACTGTTTCTCAGTGTGGATCAAGTGTTGGAAATGGTTGGTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp AGTCTAAAAAGTCAGCTTGCTTCGCCAACTGACTGCTACAACAGAAAGGAAGAGCTTAATTATGGTAGTTaGGGTCACCTGCCGTGCAAT +
Preference number: 4 (lower is better)
Translates to: SLKSQLASPTDCYNRKEELNYGS*GHLPCN
Trigger: ATTGCACGGCAGGTGACCCCAACTACCATAATTAAG...CTCTTCCTTTCTGTTGTAGCAGTCAGTTGGCGAAGCAAGCTGACTTTTTAGACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp AAAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCAGAAACCTGTCTGAACAGCTGTaGCTGTTCCAAGTGAGGCTG +
Preference number: 4 (lower is better)
Translates to: KRRNLQIYKNVRKHPIRNLSEQL*LFQVRL
Trigger: CAGCCTCACTTGGAACAGCCACAGCTGTTCAGACAG...GTTTCTGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp TCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCCGAGGATGAGCGAGAAGTTTTTCTGCTaGGCCGTTTCAGATATTTTT +
Preference number: 4 (lower is better)
Translates to: SVFKYGLFGKKATQPRMSEKFFC*AVSDIF
Trigger: AAAAATATCTGAAACGGCTCAGCAGAAAAACTTCTC...GCTCATCCTCGGCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp AAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCAGAAACGTTTGTAGAGCAACAGTaGATGGCTTGTCTCACGCTC +
Preference number: 4 (lower is better)
Translates to: KGVICKYIKTSASIPSETFVEQQ*MACLTL
Trigger: GAGCGTGAGACAAGCCATTCACTGTTGCTCTACAAA...CGTTTCTGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp CTTCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGCTGTGGCCAATATCCTTaGACTTTCTTCAGACAGGTT +
Preference number: 4 (lower is better)
Translates to: LPLHSFQTAANQLCLYRCCGQYP*TFFRQV
Trigger: AACCTGTCTGAAGAAAGTGCAAGGATATTGGCCACA...GCACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp AAAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCAGAAACGCAGCCTTTGCTGTGTaGCATGAGACACGTAACTCA +
Preference number: 4 (lower is better)
Translates to: KRRNLQIYKNVRKHPIRNAAFAV*HETRNS
Trigger: TGAGTTACGTGTCTCATGCCACACAGCAAAGGCTGC...GTTTCTGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR CAA 72 bp AAAAATACTGATCAGCGTTCAGTTCACACGTGCGAATaGAAGTCTAACATGAGAATCCACACGGAGAAAGCC +
Preference number: 4 (lower is better)
Translates to: KNTDQRSVHTCE*KSNMRIHTEKA
Trigger: GGCTTTCTCCGTGTGGATTCTCATGTTAGACTTCAATTCGCACGTGTGAACTGAACGCTGATCAGTATTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp GTTACAAAAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCGTTCACTCCAGCCATTaGCGCAACATCATTGATGTC +
Preference number: 4 (lower is better)
Translates to: VTKRRNLQIYKNVRKHPIVHSSH*RNIIDV
Trigger: GACATCAATGATGTTGCGTCAATGGCTGGAGTGAAC...GATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTTTGTAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp GTTACAAAAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCGTAGTTGGGGTCACCTaGCGTGCAATAATAGGTGTT +
Preference number: 4 (lower is better)
Translates to: VTKRRNLQIYKNVRKHPIVVGVT*RAIIGV
Trigger: AACACCTATTATTGCACGGCAGGTGACCCCAACTAC...GATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTTTGTAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CCA 90 bp AAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCAGAAACGCTTAATTATGGTAGTTaGGGTCACCTGCCGTGCAAT +
Preference number: 4 (lower is better)
Translates to: KGVICKYIKTSASIPSETLNYGS*GHLPCN
Trigger: ATTGCACGGCAGGTGACCCCAACTACCATAATTAAG...CGTTTCTGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR TCA 90 bp AGTCTAAAAAGTCAGCTTGCTTCGCCAACTGACTGCTACAACAGAAAGGAAGAGGAGAAGTTTTTCTGCTaGGCCGTTTCAGATATTTTT +
Preference number: 4 (lower is better)
Translates to: SLKSQLASPTDCYNRKEEEKFFC*AVSDIF
Trigger: AAAAATATCTGAAACGGCTCAGCAGAAAAACTTCTC...CTCTTCCTTTCTGTTGTAGCAGTCAGTTGGCGAAGCAAGCTGACTTTTTAGACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp GTTACAAAAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCTGTGGCCAATATCCTTaGACTTTCTTCAGACAGGTT +
Preference number: 4 (lower is better)
Translates to: VTKRRNLQIYKNVRKHPICGQYP*TFFRQV
Trigger: AACCTGTCTGAAGAAAGTGCAAGGATATTGGCCACA...GATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTTTGTAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR GCA 90 bp AAAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCAGAAACTGCTTCAACCTTAATTaGTCTGGGTCTTCTTGTCTG +
Preference number: 4 (lower is better)
Translates to: KRRNLQIYKNVRKHPIRNCFNLN*SGSSCL
Trigger: CAGACAAGAAGACCCAGAGCAATTAAGGTTGAAGCA...GTTTCTGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
3UTR CAA 72 bp CAATTACTGACAAAATACACCAACCATTTCCAACACTaGATCCACACTGAGAAACAGTCTGTTGTTGATTCT +
Preference number: 4 (lower is better)
Translates to: QLLTKYTNHFQH*IHTEKQSVVDS
Trigger: AGAATCAACAACAGACTGTTTCTCAGTGTGGATCAAGTGTTGGAAATGGTTGGTGTATTTTGTCAGTAATTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CCA 90 bp GCCGCGGCCCGCAGCTCGGGCGTGCGCGGCGCGAGGTGGTGGTGGTaGGCCGCGCTGGCCGCCAGCTGCGACTCGAGCGAGCCCACCAGA +
Preference number: 5 (lower is better)
Translates to: AAARSSGVRGARWWW*AALAASCDSSEPTR
Trigger: TCTGGTGGGCTCGCTCGAGTCGCAGCTGGCGGCCAGCGCGGCCCACCACCACCACCTCGCGCCGCGCACGCCCGAGCTGCGGGCCGCGGC
80% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 90 bp GGCGGCGCGGGCCCGTTGTTGACCGGGCTGACAGCAGGTGCGGCGTaGGGCGCGGTGGGCGGCGCGGCGCTCCCATTCAAAGTTTGCGCG +
Preference number: 5 (lower is better)
Translates to: GGAGPLLTGLTAGAA*GAVGGAALPFKVCA
Trigger: CGCGCAAACTTTGAATGGGAGCGCCGCGCCGCCCACCGCGCCGCACGCCGCACCTGCTGTCAGCCCGGTCAACAACGGGCCCGCGCCGCC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CCA 90 bp GCAGCTCGGGCGTGCGCGGCGCGAGGTGGTGGTGGTGGGCCGCGCTaGCCGCCAGCTGCGACTCGAGCGAGCCCACCAGATCGCTCACCA +
Preference number: 5 (lower is better)
Translates to: AARACAARGGGGGPR*PPAATRASPPDRSP
Trigger: TGGTGAGCGATCTGGTGGGCTCGCTCGAGTCGCAGCTGGCGGCCAGCGCGGCCCACCACCACCACCTCGCGCCGCGCACGCCCGAGCTGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 90 bp GGGGGCAGCTGGAAGTTCTGGATGTTGGTCGGGTTCTGCGGCGGCTaGGGCAGGCGCGGGGCCAGCACGGTGGGCGTCAGCGTGGCCCGG +
Preference number: 5 (lower is better)
Translates to: GGSWKFWMLVGFCGG*GRRGASTVGVSVAR
Trigger: CCGGGCCACGCTGACGCCCACCGTGCTGGCCCCGCGCCTGCCGCAGCCGCCGCAGAACCCGACCAACATCCAGAACTTCCAGCTGCCCCC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp TGCCCCCGGCCTGCACCCCGGCCTCTACTGCAGACCGGGACCCTGCTTGGAGCTGCTCCCATTCAAAGTTaGCGCGGCGCCGGGGCCGGG +
Preference number: 5 (lower is better)
Translates to: CPRPAPRPLLQTGTLLGAAPIQS*RGAGAG
Trigger: CCCGGCCCCGGCGCCGCGCAAACTTTGAATGGGAGC...AGCTCCAAGCAGGGTCCCGGTCTGCAGTAGAGGCCGGGGTGCAGGCCGGGGGCA
72% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CCA 90 bp TCCGCACGAGGACCATTCCTGGGGGCAGCTGGAAGTTCTGGATGTTaGTCGGGTTCTGCGGCGGCTGCGGCAGGCGCGGGGCCAGCACGG +
Preference number: 5 (lower is better)
Translates to: SARGPFLGAAGSSGC*SGSAAAAAGAGPAR
Trigger: CCGTGCTGGCCCCGCGCCTGCCGCAGCCGCCGCAGAACCCGACCAACATCCAGAACTTCCAGCTGCCCCCAGGAATGGTCCTCGTGCGGA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CCA 90 bp GTCACCTGCGGGGGCCGGATCAAGGCTCCAGGCTTCGGGGGCTGCTaGATCACCAGTGGTGTGGGCGGCGCCTGCTTGCCAACGCCAACC +
Preference number: 5 (lower is better)
Translates to: VTCGGRIKAPGFGGC*ITSGVGGACLPTPT
Trigger: GGTTGGCGTTGGCAAGCAGGCGCCGCCCACACCACTGGTGATCCAGCAGCCCCCGAAGCCTGGAGCCTTGATCCGGCCCCCGCAGGTGAC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000041618.13
CDS GCA 90 bp AAGGTCACCTGCGGGGGCCGGATCAAGGCTCCAGGCTTCGGGGGCTaGTGGATCACCAGTGGTGTGGGCGGCGCCTGCTTGCCAACGCCA +
Preference number: 5 (lower is better)
Translates to: KVTCGGRIKAPGFGG*WITSGVGGACLPTP
Trigger: TGGCGTTGGCAAGCAGGCGCCGCCCACACCACTGGTGATCCAGCAGCCCCCGAAGCCTGGAGCCTTGATCCGGCCCCCGCAGGTGACCTT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000041618.13
CDS CCA 90 bp GGGCCGGATCAAGGCTCCAGGCTTCGGGGGCTGCTGGATCACCAGTaGTGTGGGCGGCGCCTGCTTGCCAACGCCAACCTGTGTGGGCTG +
Preference number: 5 (lower is better)
Translates to: GPDQGSRLRGLLDHQ*CGRRLLANANLCGL
Trigger: CAGCCCACACAGGTTGGCGTTGGCAAGCAGGCGCCGCCCACACCACTGGTGATCCAGCAGCCCCCGAAGCCTGGAGCCTTGATCCGGCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041618.13
CDS GCA 90 bp CCAGGCTTCGGGGGCTGCTGGATCACCAGTGGTGTGGGCGGCGCCTaGTTGCCAACGCCAACCTGTGTGGGCTGCGTGAGGCTGATGACC +
Preference number: 5 (lower is better)
Translates to: PGFGGCWITSGVGGA*LPTPTCVGCVRLMT
Trigger: GGTCATCAGCCTCACGCAGCCCACACAGGTTGGCGTTGGCAAGCAGGCGCCGCCCACACCACTGGTGATCCAGCAGCCCCCGAAGCCTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041618.13
CDS CCA 90 bp CCAACGCCAACCTGTGTGGGCTGCGTGAGGCTGATGACCGGGGGCTaGAGGGCGCTGGTCACCGAGGCAGCTGTCTTCCCAGCTGTACGC +
Preference number: 5 (lower is better)
Translates to: PTPTCVGCVRLMTGG*RALVTEAAVFPAVR
Trigger: GCGTACAGCTGGGAAGACAGCTGCCTCGGTGACCAGCGCCCTCCAGCCCCCGGTCATCAGCCTCACGCAGCCCACACAGGTTGGCGTTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041618.13
CDS GCA 90 bp ACCACAGCCGTCAGTGCAGTCGTGGCCTGCGAAGCAGGCGGCTGCTaGTGCTGGCTCTGCTGGATAAAGGCCGCGGAGTCTGGGGTCAGC +
Preference number: 5 (lower is better)
Translates to: TTAVSAVVACEAGGC*CWLCWIKAAESGVS
Trigger: GCTGACCCCAGACTCCGCGGCCTTTATCCAGCAGAGCCAGCAGCAGCAGCCGCCTGCTTCGCAGGCCACGACTGCACTGACGGCTGTGGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 90 bp AGCACCACAGCCGTCAGTGCAGTCGTGGCCTGCGAAGCAGGCGGCTaGTGCTGCTGGCTCTGCTGGATAAAGGCCGCGGAGTCTGGGGTC +
Preference number: 5 (lower is better)
Translates to: STTAVSAVVACEAGG*CCWLCWIKAAESGV
Trigger: GACCCCAGACTCCGCGGCCTTTATCCAGCAGAGCCAGCAGCAGCAGCCGCCTGCTTCGCAGGCCACGACTGCACTGACGGCTGTGGTGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CCA 90 bp TCTGGACAGGTGGAGCACCTGTGGGGGTTGCAGGACGGGGTGCCATaGTACTCTGAGGCTGGGCCTGGGCATGGGCCTGCATCTGGGCCA +
Preference number: 5 (lower is better)
Translates to: SGQVEHLWGLQDGVP*YSEAGPGHGPASGP
Trigger: TGGCCCAGATGCAGGCCCATGCCCAGGCCCAGCCTCAGAGTACCATGGCACCCCGTCCTGCAACCCCCACAGGTGCTCCACCTGTCCAGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CCA 90 bp GCCGTCAGTGCAGTCGTGGCCTGCGAAGCAGGCGGCTGCTGCTGCTaGCTCTGCTGGATAAAGGCCGCGGAGTCTGGGGTCAGCTGTCTC +
Preference number: 5 (lower is better)
Translates to: AVSAVVACEAGGCCC*LCWIKAAESGVSCL
Trigger: GAGACAGCTGACCCCAGACTCCGCGGCCTTTATCCAGCAGAGCCAGCAGCAGCAGCCGCCTGCTTCGCAGGCCACGACTGCACTGACGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CCA 90 bp TGCTGGATCACCTGTGTGGGCTGCGTGAGGCTGATGACCGGGGGCTaGAGGGCGCTGGTCACCGAGGCAGCTGTCTTCCCAGCTGTACGC +
Preference number: 5 (lower is better)
Translates to: CWITCVGCVRLMTGG*RALVTEAAVFPAVR
Trigger: GCGTACAGCTGGGAAGACAGCTGCCTCGGTGACCAGCGCCCTCCAGCCCCCGGTCATCAGCCTCACGCAGCCCACACAGGTGATCCAGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp TGCCCCCGGCCTGCACCCCGGCCTCTACTGCAGACCGGGACCCTGCTTGGAGCTTCGTCCACCTCGCTGTaGAAGAAGACCTCGTCCAGC +
Preference number: 5 (lower is better)
Translates to: CPRPAPRPLLQTGTLLGASSTSL*KKTSSS
Trigger: GCTGGACGAGGTCTTCTTCAACAGCGAGGTGGACGA...AGCTCCAAGCAGGGTCCCGGTCTGCAGTAGAGGCCGGGGTGCAGGCCGGGGGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS TCA 90 bp GGCGCTGGTCACCGAGGCAGCTGTCTTCCCAGCTGTACGCTGCACTaGGCTGCTCAGCACCACAGCCGTCAGTGCAGTCGTGGCCTGCGA +
Preference number: 5 (lower is better)
Translates to: GAGHRGSCLPSCTLH*AAQHHSRQCSRGLR
Trigger: TCGCAGGCCACGACTGCACTGACGGCTGTGGTGCTGAGCAGCTCAGTGCAGCGTACAGCTGGGAAGACAGCTGCCTCGGTGACCAGCGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 90 bp TGGAGGGCGCTGGTCACCGAGGCAGCTGTCTTCCCAGCTGTACGCTaGACTGAGCTGCTCAGCACCACAGCCGTCAGTGCAGTCGTGGCC +
Preference number: 5 (lower is better)
Translates to: WRALVTEAAVFPAVR*TELLSTTAVSAVVA
Trigger: GGCCACGACTGCACTGACGGCTGTGGTGCTGAGCAGCTCAGTGCAGCGTACAGCTGGGAAGACAGCTGCCTCGGTGACCAGCGCCCTCCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CCA 90 bp GCAGTCGTGGCCTGCGAAGCAGGCGGCTGCTGCTGCTGGCTCTGCTaGATAAAGGCCGCGGAGTCTGGGGTCAGCTGTCTCAAGGCAGGT +
Preference number: 5 (lower is better)
Translates to: AVVACEAGGCCCWLC*IKAAESGVSCLKAG
Trigger: ACCTGCCTTGAGACAGCTGACCCCAGACTCCGCGGCCTTTATCCAGCAGAGCCAGCAGCAGCAGCCGCCTGCTTCGCAGGCCACGACTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp CCCCCGGCCTGCACCCCGGCCTCTACTGCAGACCGGGACCCTGCTTGGAGCTTGCTGGGCAGCAGCTGCTaGTGCAGATACAGTAGACAG +
Preference number: 5 (lower is better)
Translates to: PPACTPASTADRDPAWSLLGSSC*CRYSRQ
Trigger: CTGTCTACTGTATCTGCACAAGCAGCTGCTGCCCAG...CAAGCTCCAAGCAGGGTCCCGGTCTGCAGTAGAGGCCGGGGTGCAGGCCGGGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 90 bp AGCCTGCACAGTGGAGATCTGGACAGGTGGAGCACCTGTGGGGGTTaGAGGACGGGGTGCCATGGTACTCTGAGGCTGGGCCTGGGCATG +
Preference number: 5 (lower is better)
Translates to: SLHSGDLDRWSTCGG*RTGCHGTLRLGLGM
Trigger: CATGCCCAGGCCCAGCCTCAGAGTACCATGGCACCCCGTCCTGCAACCCCCACAGGTGCTCCACCTGTCCAGATCTCCACTGTGCAGGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 90 bp AGTGCAGTCGTGGCCTGCGAAGCAGGCGGCTGCTGCTGCTGGCTCTaGTGGATAAAGGCCGCGGAGTCTGGGGTCAGCTGTCTCAAGGCA +
Preference number: 5 (lower is better)
Translates to: SAVVACEAGGCCCWL*WIKAAESGVSCLKA
Trigger: TGCCTTGAGACAGCTGACCCCAGACTCCGCGGCCTTTATCCAGCAGAGCCAGCAGCAGCAGCCGCCTGCTTCGCAGGCCACGACTGCACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 90 bp TGGTCACCGAGGCAGCTGTCTTCCCAGCTGTACGCTGCACTGAGCTaGTCAGCACCACAGCCGTCAGTGCAGTCGTGGCCTGCGAAGCAG +
Preference number: 5 (lower is better)
Translates to: WSPRQLSSQLYAALS*SAPQPSVQSWPAKQ
Trigger: CTGCTTCGCAGGCCACGACTGCACTGACGGCTGTGGTGCTGAGCAGCTCAGTGCAGCGTACAGCTGGGAAGACAGCTGCCTCGGTGACCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 90 bp CTGCTGTGGTGTGGTGAGCATGATCCGGTTGTGAGGCTGCCGCAATaGGACCATGGGTGTCTGCGTCAAGGTCACCTGCGGGGGCCGGAT +
Preference number: 5 (lower is better)
Translates to: LLWCGEHDPVVRLPQ*DHGCLRQGHLRGPD
Trigger: ATCCGGCCCCCGCAGGTGACCTTGACGCAGACACCCATGGTCGCATTGCGGCAGCCTCACAACCGGATCATGCTCACCACACCACAGCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS TCA 90 bp GCTGTTCCAAGTGAGGCTGGCTGTGCGGAGCCACCCAGAACCAGCTaGGGCTGTACCCCGGGAGATCGCTGTAGGGTTGTAGTGGGCTGT +
Preference number: 5 (lower is better)
Translates to: AVPSEAGCAEPPRTS*GCTPGDRCRVVVGC
Trigger: ACAGCCCACTACAACCCTACAGCGATCTCCCGGGGTACAGCCTCAGCTGGTTCTGGGTGGCTCCGCACAGCCAGCCTCACTTGGAACAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp AAAGGAAGAGATGAGGTCATCGGCTGTAGACATACACCTAGCGGGAGTCAGGGTGGCGGCGCGGGCCCGTaGTTGACCGGGCTGACAGCA +
Preference number: 5 (lower is better)
Translates to: KGRDEVIGCRHTPSGSQGGGAGP*LTGLTA
Trigger: TGCTGTCAGCCCGGTCAACAACGGGCCCGCGCCGCC...ACCCTGACTCCCGCTAGGTGTATGTCTACAGCCGATGACCTCATCTCTTCCTTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp GCTTGTGTTCCTGGGGAGCTTCGTGTAGACGGGAGGGAAGGGACAGGACAGGGCGCCAGTGCAGTGAGGTaGGCATCTCGTTGTCGCATC +
Preference number: 5 (lower is better)
Translates to: ACVPGELRVDGREGTGQGASAVR*ASRCRI
Trigger: GATGCGACAACGAGATGCCAACCTCACTGCACTGGC...GCCCTGTCCTGTCCCTTCCCTCCCGTCTACACGAAGCTCCCCAGGAACACAAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp GCTTGTGTTCCTGGGGAGCTTCGTGTAGACGGGAGGGAAGGGACAGGACAGGGCGACCCGCGTGATTCTTaGCCGTGTGAACTGTCTGGG +
Preference number: 5 (lower is better)
Translates to: ACVPGELRVDGREGTGQGDPRDS*PCELSG
Trigger: CCCAGACAGTTCACACGGCAAAGAATCACGCGGGTC...GCCCTGTCCTGTCCCTTCCCTCCCGTCTACACGAAGCTCCCCAGGAACACAAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CCA 90 bp TGCCGTGCAATAATAGGTGTTCCTGGAGCCTGCACAGTGGAGATCTaGACAGGTGGAGCACCTGTGGGGGTTGCAGGACGGGGTGCCATG +
Preference number: 5 (lower is better)
Translates to: CRAIIGVPGACTVEI*TGGAPVGVAGRGAM
Trigger: CATGGCACCCCGTCCTGCAACCCCCACAGGTGCTCCACCTGTCCAGATCTCCACTGTGCAGGCTCCAGGAACACCTATTATTGCACGGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp GCTTGTGTTCCTGGGGAGCTTCGTGTAGACGGGAGGGAAGGGACAGGACAGGGCCCCGGCTCCTTGAGTTaGTTTTTCTGGGCAGCAGCT +
Preference number: 5 (lower is better)
Translates to: ACVPGELRVDGREGTGQGPGSLS*FFWAAA
Trigger: AGCTGCTGCCCAGAAAAACAAACTCAAGGAGCCGGG...GCCCTGTCCTGTCCCTTCCCTCCCGTCTACACGAAGCTCCCCAGGAACACAAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp GCTTGTGTTCCTGGGGAGCTTCGTGTAGACGGGAGGGAAGGGACAGGACAGGGCATGAGGTCCCTGAGGTaGACCCGCGTGATTCTTTGC +
Preference number: 5 (lower is better)
Translates to: ACVPGELRVDGREGTGQGMRSLR*TRVILC
Trigger: GCAAAGAATCACGCGGGTCAACCTCAGGGACCTCAT...GCCCTGTCCTGTCCCTTCCCTCCCGTCTACACGAAGCTCCCCAGGAACACAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS TCA 90 bp TGTTCGTTGAGGTGTCCCTGTCTGAACAGCTGTGGCTGTTCCAAGTaGGGCTGGCTGTGCGGAGCCACCCAGAACCAGCTGAGGCTGTAC +
Preference number: 5 (lower is better)
Translates to: CSLRCPCLNSCGCSK*GWLCGATQNQLRLY
Trigger: GTACAGCCTCAGCTGGTTCTGGGTGGCTCCGCACAGCCAGCCTCACTTGGAACAGCCACAGCTGTTCAGACAGGGACACCTCAACGAACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 90 bp TGGCCCAGTGCAGTCCACTTTCCTCTTTTTCCTGGGCCCGATCGCTaGCAGTGCAGTGAGGTTGGCATCTCGTTGTCGCATCTGTGCCAG +
Preference number: 5 (lower is better)
Translates to: WPSAVHFPLFPGPDR*QCSEVGISLSHLCQ
Trigger: CTGGCACAGATGCGACAACGAGATGCCAACCTCACTGCACTGGCAGCGATCGGGCCCAGGAAAAAGAGGAAAGTGGACTGCACTGGGCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS TCA 90 bp TGGTTCAGTTGGATCTGCTGTGGTGTGGTGAGCATGATCCGGTTGTaGGGCTGCCGCAATGCGACCATGGGTGTCTGCGTCAAGGTCACC +
Preference number: 5 (lower is better)
Translates to: WFSWICCGVVSMIRL*GCRNATMGVCVKVT
Trigger: GGTGACCTTGACGCAGACACCCATGGTCGCATTGCGGCAGCCTCACAACCGGATCATGCTCACCACACCACAGCAGATCCAACTGAACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS TCA 90 bp AGTCCACTTTCCTCTTTTTCCTGGGCCCGATCGCTGCCAGTGCAGTaGGGTTGGCATCTCGTTGTCGCATCTGTGCCAGCTCCTGCTGCT +
Preference number: 5 (lower is better)
Translates to: SPLSSFSWARSLPVQ*GWHLVVASVPAPAA
Trigger: AGCAGCAGGAGCTGGCACAGATGCGACAACGAGATGCCAACCTCACTGCACTGGCAGCGATCGGGCCCAGGAAAAAGAGGAAAGTGGACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 90 bp AGTGCAGTCCACTTTCCTCTTTTTCCTGGGCCCGATCGCTGCCAGTaGAGTGAGGTTGGCATCTCGTTGTCGCATCTGTGCCAGCTCCTG +
Preference number: 5 (lower is better)
Translates to: SAVHFPLFPGPDRCQ*SEVGISLSHLCQLL
Trigger: CAGGAGCTGGCACAGATGCGACAACGAGATGCCAACCTCACTGCACTGGCAGCGATCGGGCCCAGGAAAAAGAGGAAAGTGGACTGCACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 90 bp TCTAAACAAAATATGAGGTCCCTGAGGTTGACCCGCGTGATTCTTTaGCGTGTGAACTGTCTGGGGGTTCCCACGCCGGAGCCGCCTGGG +
Preference number: 5 (lower is better)
Translates to: SKQNMRSLRLTRVIL*RVNCLGVPTPEPPG
Trigger: CCCAGGCGGCTCCGGCGTGGGAACCCCCAGACAGTTCACACGGCAAAGAATCACGCGGGTCAACCTCAGGGACCTCATATTTTGTTTAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CCA 90 bp AATAATAGGTGTTCCTGGAGCCTGCACAGTGGAGATCTGGACAGGTaGAGCACCTGTGGGGGTTGCAGGACGGGGTGCCATGGTACTCTG +
Preference number: 5 (lower is better)
Translates to: NNRCSWSLHSGDLDR*STCGGCRTGCHGTL
Trigger: CAGAGTACCATGGCACCCCGTCCTGCAACCCCCACAGGTGCTCCACCTGTCCAGATCTCCACTGTGCAGGCTCCAGGAACACCTATTATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CCA 90 bp TTTCACCACAGGGACTGGCTGCAGCTGGTTCAGTTGGATCTGCTGTaGTGTGGTGAGCATGATCCGGTTGTGAGGCTGCCGCAATGCGAC +
Preference number: 5 (lower is better)
Translates to: FHHRDWLQLVQLDLL*CGEHDPVVRLPQCD
Trigger: GTCGCATTGCGGCAGCCTCACAACCGGATCATGCTCACCACACCACAGCAGATCCAACTGAACCAGCTGCAGCCAGTCCCTGTGGTGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp AAGCGCTTCCATCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCGGCGGCGCGGGCCCGTaGTTGACCGGGCTGACAGCA +
Preference number: 5 (lower is better)
Translates to: KRFHQSLNMACLARRPLSGGAGP*LTGLTA
Trigger: TGCTGTCAGCCCGGTCAACAACGGGCCCGCGCCGCC...GCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGATGGAAGCGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp TCAGTTCACACGTGCGAATTGAAGTCTAACATGAGAATCCACACGGAGAAAGCCGGCGCGGGCCCGTTGTaGACCGGGCTGACAGCAGGT +
Preference number: 5 (lower is better)
Translates to: SVHTCELKSNMRIHTEKAGAGPL*TGLTAG
Trigger: ACCTGCTGTCAGCCCGGTCAACAACGGGCCCGCGCC...GGCTTTCTCCGTGTGGATTCTCATGTTAGACTTCAATTCGCACGTGTGAACTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS TCA 90 bp GGAGATCGCTGTAGGGTTGTAGTGGGCTGTACCGTCGTCTGGGCCTaGGACACTTGCTTAATTATGGTAGTTGGGGTCACCTGCCGTGCA +
Preference number: 5 (lower is better)
Translates to: GDRCRVVVGCTVVWA*DTCLIMVVGVTCRA
Trigger: TGCACGGCAGGTGACCCCAACTACCATAATTAAGCAAGTGTCTCAGGCCCAGACGACGGTACAGCCCACTACAACCCTACAGCGATCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp GCTTGTGTTCCTGGGGAGCTTCGTGTAGACGGGAGGGAAGGGACAGGACAGGGCTTGTGGCCAATATCCTaGCACTTTCTTCAGACAGGT +
Preference number: 5 (lower is better)
Translates to: ACVPGELRVDGREGTGQGLWPIS*HFLQTG
Trigger: ACCTGTCTGAAGAAAGTGCAAGGATATTGGCCACAA...GCCCTGTCCTGTCCCTTCCCTCCCGTCTACACGAAGCTCCCCAGGAACACAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 90 bp AGTTCCGTGATGCCGTGCTTTTTACCTATCTCCAGTATCCTCCTCTaGAAAGGCGCGGGGAGGAGGAAGGTGTCGTCTTTACAGGATCGG +
Preference number: 5 (lower is better)
Translates to: SSVMPCFLPISSILL*KGAGRRKVSSLQDR
Trigger: CCGATCCTGTAAAGACGACACCTTCCTCCTCCCCGCGCCTTTGCAGAGGAGGATACTGGAGATAGGTAAAAAGCACGGCATCACGGAACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp AGGTTCTCACTTCCTAGGCTCTCACTTCCTTCCACTTCACAGCTTCCAAACTGCTGGAAGTTCTGGATGTaGGTCGGGTTCTGCGGCGGC +
Preference number: 5 (lower is better)
Translates to: RFSLPRLSLPSTSQLPNCWKFWM*VGFCGG
Trigger: GCCGCCGCAGAACCCGACCAACATCCAGAACTTCCA...GCAGTTTGGAAGCTGTGAAGTGGAAGGAAGTGAGAGCCTAGGAAGTGAGAACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CCA 90 bp CTGTACCGTCGTCTGGGCCTGAGACACTTGCTTAATTATGGTAGTTaGGGTCACCTGCCGTGCAATAATAGGTGTTCCTGGAGCCTGCAC +
Preference number: 5 (lower is better)
Translates to: LYRRLGLRHLLNYGS*GHLPCNNRCSWSLH
Trigger: GTGCAGGCTCCAGGAACACCTATTATTGCACGGCAGGTGACCCCAACTACCATAATTAAGCAAGTGTCTCAGGCCCAGACGACGGTACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp TACACCAACCATTTCCAACACTTGATCCACACTGAGAAACAGTCTGTTGTTGATGCTCCCATTCAAAGTTaGCGCGGCGCCGGGGCCGGG +
Preference number: 5 (lower is better)
Translates to: YTNHFQHLIHTEKQSVVDAPIQS*RGAGAG
Trigger: CCCGGCCCCGGCGCCGCGCAAACTTTGAATGGGAGC...ATCAACAACAGACTGTTTCTCAGTGTGGATCAAGTGTTGGAAATGGTTGGTGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp AGGTTCTCACTTCCTAGGCTCTCACTTCCTTCCACTTCACAGCTTCCAAACTGCCCGGACATCACTCGCTaGCTCGTATCTGTCGTCGTC +
Preference number: 5 (lower is better)
Translates to: RFSLPRLSLPSTSQLPNCPDITR*LVSVVV
Trigger: GACGACGACAGATACGAGCAAGCGAGTGATGTCCGG...GCAGTTTGGAAGCTGTGAAGTGGAAGGAAGTGAGAGCCTAGGAAGTGAGAACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 90 bp GGCCTGAGACACTTGCTTAATTATGGTAGTTGGGGTCACCTGCCGTaGAATAATAGGTGTTCCTGGAGCCTGCACAGTGGAGATCTGGAC +
Preference number: 5 (lower is better)
Translates to: GLRHLLNYGSWGHLP*NNRCSWSLHSGDLD
Trigger: GTCCAGATCTCCACTGTGCAGGCTCCAGGAACACCTATTATTGCACGGCAGGTGACCCCAACTACCATAATTAAGCAAGTGTCTCAGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp AAAGGAAGAGATGAGGTCATCGGCTGTAGACATACACCTAGCGGGAGTCAGGGTACAGTAGACAGGGCTTaGGTTCCAGGTAACACGGTG +
Preference number: 5 (lower is better)
Translates to: KGRDEVIGCRHTPSGSQGTVDRA*VPGNTV
Trigger: CACCGTGTTACCTGGAACCAAAGCCCTGTCTACTGT...ACCCTGACTCCCGCTAGGTGTATGTCTACAGCCGATGACCTCATCTCTTCCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp CCTTCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGTGGAAGTTCTGGATGTaGGTCGGGTTCTGCGGCGGC +
Preference number: 5 (lower is better)
Translates to: PSTSQLPNCSKSIVFVQVWKFWM*VGFCGG
Trigger: GCCGCCGCAGAACCCGACCAACATCCAGAACTTCCA...CACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp AAGCGCTTCCATCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCGACCCGCGTGATTCTTaGCCGTGTGAACTGTCTGGG +
Preference number: 5 (lower is better)
Translates to: KRFHQSLNMACLARRPLSDPRDS*PCELSG
Trigger: CCCAGACAGTTCACACGGCAAAGAATCACGCGGGTC...GCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGATGGAAGCGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp TCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCCGAGGATGAGCATGAGGTCCCTGAGGTaGACCCGCGTGATTCTTTGC +
Preference number: 5 (lower is better)
Translates to: SVFKYGLFGKKATQPRMSMRSLR*TRVILC
Trigger: GCAAAGAATCACGCGGGTCAACCTCAGGGACCTCAT...GCTCATCCTCGGCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp TCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGCTGTCGTCCACCTCGCTGTaGAAGAAGACCTCGTCCAGC +
Preference number: 5 (lower is better)
Translates to: STSQLPNCSKSIVFVQVLSSTSL*KKTSSS
Trigger: GCTGGACGAGGTCTTCTTCAACAGCGAGGTGGACGA...CAGCACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp AAGCGCTTCCATCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCCTGGGCAGCAGCTGCTaGTGCAGATACAGTAGACAG +
Preference number: 5 (lower is better)
Translates to: KRFHQSLNMACLARRPLSLGSSC*CRYSRQ
Trigger: CTGTCTACTGTATCTGCACAAGCAGCTGCTGCCCAG...GCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGATGGAAGCGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp AGTCTAAAAAGTCAGCTTGCTTCGCCAACTGACTGCTACAACAGAAAGGAAGAGGCCAGTGCAGTGAGGTaGGCATCTCGTTGTCGCATC +
Preference number: 5 (lower is better)
Translates to: SLKSQLASPTDCYNRKEEASAVR*ASRCRI
Trigger: GATGCGACAACGAGATGCCAACCTCACTGCACTGGC...CTCTTCCTTTCTGTTGTAGCAGTCAGTTGGCGAAGCAAGCTGACTTTTTAGACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS TCA 90 bp GTGTGGCATGAGACACGTAACTCACTACATCTGGATGCAGTTCCGTaGTGCCGTGCTTTTTACCTATCTCCAGTATCCTCCTCTGCAAAG +
Preference number: 5 (lower is better)
Translates to: VWHETRNSLHLDAVP*CRAFYLSPVSSSAK
Trigger: CTTTGCAGAGGAGGATACTGGAGATAGGTAAAAAGCACGGCATCACGGAACTGCATCCAGATGTAGTGAGTTACGTGTCTCATGCCACAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp TCAGTTCACACGTGCGAATTGAAGTCTAACATGAGAATCCACACGGAGAAAGCCTTGCTCTGGGTCTTCTaGTCTGGATCGAGACTTCGC +
Preference number: 5 (lower is better)
Translates to: SVHTCELKSNMRIHTEKALLWVF*SGSRLR
Trigger: GCGAAGTCTCGATCCAGACAAGAAGACCCAGAGCAA...GGCTTTCTCCGTGTGGATTCTCATGTTAGACTTCAATTCGCACGTGTGAACTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp AAGCGCTTCCATCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCTTGCTCTGGGTCTTCTaGTCTGGATCGAGACTTCGC +
Preference number: 5 (lower is better)
Translates to: KRFHQSLNMACLARRPLSLLWVF*SGSRLR
Trigger: GCGAAGTCTCGATCCAGACAAGAAGACCCAGAGCAA...GCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGATGGAAGCGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp AGGTTCTCACTTCCTAGGCTCTCACTTCCTTCCACTTCACAGCTTCCAAACTGCGCAACAGTGAATGGCTaGTCTCACGCTCGTTTTCTA +
Preference number: 5 (lower is better)
Translates to: RFSLPRLSLPSTSQLPNCATVNG*SHARFL
Trigger: TAGAAAACGAGCGTGAGACAAGCCATTCACTGTTGC...GCAGTTTGGAAGCTGTGAAGTGGAAGGAAGTGAGAGCCTAGGAAGTGAGAACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS TCA 90 bp CATCTTTCCTCTGCTTTTCAATCTGATCCAGTTGTTCAAAGAATTTaGGCTGAGCCCGGACATCACTCGCTTGCTCGTATCTGTCGTCGT +
Preference number: 5 (lower is better)
Translates to: HLSSAFQSDPVVQRI*AEPGHHSLARICRR
Trigger: ACGACGACAGATACGAGCAAGCGAGTGATGTCCGGGCTCAGCTCAAATTCTTTGAACAACTGGATCAGATTGAAAAGCAGAGGAAAGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp AAAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCAGAAACCCGGACATCACTCGCTaGCTCGTATCTGTCGTCGTC +
Preference number: 5 (lower is better)
Translates to: KRRNLQIYKNVRKHPIRNPDITR*LVSVVV
Trigger: GACGACGACAGATACGAGCAAGCGAGTGATGTCCGG...GTTTCTGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp AAAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCAGAAACCCCGGCTCCTTGAGTTaGTTTTTCTGGGCAGCAGCT +
Preference number: 5 (lower is better)
Translates to: KRRNLQIYKNVRKHPIRNPGSLS*FFWAAA
Trigger: AGCTGCTGCCCAGAAAAACAAACTCAAGGAGCCGGG...GTTTCTGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp AAGCGCTTCCATCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCATTGACGCAACATCATaGATGTCATCATCATCCCGG +
Preference number: 5 (lower is better)
Translates to: KRFHQSLNMACLARRPLSIDATS*MSSSSR
Trigger: CCGGGATGATGATGACATCAATGATGTTGCGTCAAT...GCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGATGGAAGCGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp TCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGCTGGCAACAGTGAATGGCTaGTCTCACGCTCGTTTTCTA +
Preference number: 5 (lower is better)
Translates to: STSQLPNCSKSIVFVQVLATVNG*SHARFL
Trigger: TAGAAAACGAGCGTGAGACAAGCCATTCACTGTTGC...CAGCACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp GTTACAAAAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCACAGTAGACAGGGCTTaGGTTCCAGGTAACACGGTG +
Preference number: 5 (lower is better)
Translates to: VTKRRNLQIYKNVRKHPITVDRA*VPGNTV
Trigger: CACCGTGTTACCTGGAACCAAAGCCCTGTCTACTGT...GATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTTTGTAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp CCTTCCACTTCACAGCTTCCAAACTGCAGCAAATCAATTGTGTTTGTACAGGTGTTGTGGCCAATATCCTaGCACTTTCTTCAGACAGGT +
Preference number: 5 (lower is better)
Translates to: PSTSQLPNCSKSIVFVQVLWPIS*HFLQTG
Trigger: ACCTGTCTGAAGAAAGTGCAAGGATATTGGCCACAA...CACCTGTACAAACACAATTGATTTGCTGCAGTTTGGAAGCTGTGAAGTGGAAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp AGTCTAAAAAGTCAGCTTGCTTCGCCAACTGACTGCTACAACAGAAAGGAAGAGGCTGCTGCATCTCTTTaGCTTTCTGCTTCAACCTTA +
Preference number: 5 (lower is better)
Translates to: SLKSQLASPTDCYNRKEEAAASL*LSASTL
Trigger: TAAGGTTGAAGCAGAAAGCAAAAGAGATGCAGCAGC...CTCTTCCTTTCTGTTGTAGCAGTCAGTTGGCGAAGCAAGCTGACTTTTTAGACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp AAGCGCTTCCATCAGTCTTTAAATATGGCTTGTTTGGCAAGAAGGCCACTCAGCTTCAATCTGATCCAGTaGTTCAAAGAATTTGAGCTG +
Preference number: 5 (lower is better)
Translates to: KRFHQSLNMACLARRPLSFNLIQ*FKEFEL
Trigger: CAGCTCAAATTCTTTGAACAACTGGATCAGATTGAA...GCTGAGTGGCCTTCTTGCCAAACAAGCCATATTTAAAGACTGATGGAAGCGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp AAAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCAGAAACATTGACGCAACATCATaGATGTCATCATCATCCCGG +
Preference number: 5 (lower is better)
Translates to: KRRNLQIYKNVRKHPIRNIDATS*MSSSSR
Trigger: CCGGGATGATGATGACATCAATGATGTTGCGTCAAT...GTTTCTGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS-3UTR CAA 90 bp AAAGGCGTAATCTGCAAATATATAAAAACGTCCGCAAGCATCCCATCAGAAACGTTCAATCTGATCCAGTaGTTCAAAGAATTTGAGCTG +
Preference number: 5 (lower is better)
Translates to: KGVICKYIKTSASIPSETFNLIQ*FKEFEL
Trigger: CAGCTCAAATTCTTTGAACAACTGGATCAGATTGAA...CGTTTCTGATGGGATGCTTGCGGACGTTTTTATATATTTGCAGATTACGCCTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CAA 90 bp GCCTGGATGACAGAGCCGGCGGCGGGCGGCGGCGCGGGCCCGTTGTaGACCGGGCTGACAGCAGGTGCGGCGTGCGGCGCGGTGGGCGGC +
Preference number: 6 (lower is better)
Translates to: AWMTEPAAGGGAGPL*TGLTAGAACGAVGG
Trigger: GCCGCCCACCGCGCCGCACGCCGCACCTGCTGTCAGCCCGGTCAACAACGGGCCCGCGCCGCCGCCCGCCGCCGGCTCTGTCATCCAGGC
80% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CAA 90 bp GCCGCCTGGATGACAGAGCCGGCGGCGGGCGGCGGCGCGGGCCCGTaGTTGACCGGGCTGACAGCAGGTGCGGCGTGCGGCGCGGTGGGC +
Preference number: 6 (lower is better)
Translates to: AAWMTEPAAGGGAGP*LTGLTAGAACGAVG
Trigger: GCCCACCGCGCCGCACGCCGCACCTGCTGTCAGCCCGGTCAACAACGGGCCCGCGCCGCCGCCCGCCGCCGGCTCTGTCATCCAGGCGGC
80% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CCA 72 bp CGCAGCTCGGGCGTGCGCGGCGCGAGGTGGTGGTGGTaGGCCGCGCTGGCCGCCAGCTGCGACTCGAGCGAG +
Preference number: 6 (lower is better)
Translates to: RSSGVRGARWWW*AALAASCDSSE
Trigger: CTCGCTCGAGTCGCAGCTGGCGGCCAGCGCGGCCCACCACCACCACCTCGCGCCGCGCACGCCCGAGCTGCG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CCA 72 bp GCGTGCGCGGCGCGAGGTGGTGGTGGTGGGCCGCGCTaGCCGCCAGCTGCGACTCGAGCGAGCCCACCAGAT +
Preference number: 6 (lower is better)
Translates to: ACAARGGGGGPR*PPAATRASPPD
Trigger: ATCTGGTGGGCTCGCTCGAGTCGCAGCTGGCGGCCAGCGCGGCCCACCACCACCACCTCGCGCCGCGCACGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 72 bp GGCCCGTTGTTGACCGGGCTGACAGCAGGTGCGGCGTaGGGCGCGGTGGGCGGCGCGGCGCTCCCATTCAAA +
Preference number: 6 (lower is better)
Translates to: GPLLTGLTAGAA*GAVGGAALPFK
Trigger: TTTGAATGGGAGCGCCGCGCCGCCCACCGCGCCGCACGCCGCACCTGCTGTCAGCCCGGTCAACAACGGGCC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 72 bp TGCGGGGGCCGGATCAAGGCTCCAGGCTTCGGGGGCTaGTGGATCACCAGTGGTGTGGGCGGCGCCTGCTTG +
Preference number: 6 (lower is better)
Translates to: CGGRIKAPGFGG*WITSGVGGACL
Trigger: CAAGCAGGCGCCGCCCACACCACTGGTGATCCAGCAGCCCCCGAAGCCTGGAGCCTTGATCCGGCCCCCGCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000041618.13
CDS CCA 72 bp GGGGGCCGGATCAAGGCTCCAGGCTTCGGGGGCTGCTaGATCACCAGTGGTGTGGGCGGCGCCTGCTTGCCA +
Preference number: 6 (lower is better)
Translates to: GGRIKAPGFGGC*ITSGVGGACLP
Trigger: TGGCAAGCAGGCGCCGCCCACACCACTGGTGATCCAGCAGCCCCCGAAGCCTGGAGCCTTGATCCGGCCCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000041618.13
CDS CAA 90 bp CTCCGCACGAGGACCATTCCTGGGGGCAGCTGGAAGTTCTGGATGTaGGTCGGGTTCTGCGGCGGCTGCGGCAGGCGCGGGGCCAGCACG +
Preference number: 6 (lower is better)
Translates to: LRTRTIPGGSWKFWM*VGFCGGCGRRGAST
Trigger: CGTGCTGGCCCCGCGCCTGCCGCAGCCGCCGCAGAACCCGACCAACATCCAGAACTTCCAGCTGCCCCCAGGAATGGTCCTCGTGCGGAG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CAA 90 bp GGCTTCGGGGGCTGCTGGATCACCAGTGGTGTGGGCGGCGCCTGCTaGCCAACGCCAACCTGTGTGGGCTGCGTGAGGCTGATGACCGGG +
Preference number: 6 (lower is better)
Translates to: GFGGCWITSGVGGAC*PTPTCVGCVRLMTG
Trigger: CCCGGTCATCAGCCTCACGCAGCCCACACAGGTTGGCGTTGGCAAGCAGGCGCCGCCCACACCACTGGTGATCCAGCAGCCCCCGAAGCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041618.13
CDS GCA 72 bp GGGGGCTGCTGGATCACCAGTGGTGTGGGCGGCGCCTaGTTGCCAACGCCAACCTGTGTGGGCTGCGTGAGG +
Preference number: 6 (lower is better)
Translates to: GGCWITSGVGGA*LPTPTCVGCVR
Trigger: CCTCACGCAGCCCACACAGGTTGGCGTTGGCAAGCAGGCGCCGCCCACACCACTGGTGATCCAGCAGCCCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041618.13
CDS CCA 72 bp GGACCATTCCTGGGGGCAGCTGGAAGTTCTGGATGTTaGTCGGGTTCTGCGGCGGCTGCGGCAGGCGCGGGG +
Preference number: 6 (lower is better)
Translates to: GPFLGAAGSSGC*SGSAAAAAGAG
Trigger: CCCCGCGCCTGCCGCAGCCGCCGCAGAACCCGACCAACATCCAGAACTTCCAGCTGCCCCCAGGAATGGTCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 72 bp GACAGGTGGAGCACCTGTGGGGGTTGCAGGACGGGGTaGCATGGTACTCTGAGGCTGGGCCTGGGCATGGGC +
Preference number: 6 (lower is better)
Translates to: DRWSTCGGCRTG*HGTLRLGLGMG
Trigger: GCCCATGCCCAGGCCCAGCCTCAGAGTACCATGGCACCCCGTCCTGCAACCCCCACAGGTGCTCCACCTGTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 72 bp GCCGTCAGTGCAGTCGTGGCCTGCGAAGCAGGCGGCTaGTGCTGCTGGCTCTGCTGGATAAAGGCCGCGGAG +
Preference number: 6 (lower is better)
Translates to: AVSAVVACEAGG*CCWLCWIKAAE
Trigger: CTCCGCGGCCTTTATCCAGCAGAGCCAGCAGCAGCAGCCGCCTGCTTCGCAGGCCACGACTGCACTGACGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 72 bp TGCGGGGGCCGGATCAAGGCTCCAGGCTTCGGGGGCTaGTGGATCACCTGTGTGGGCTGCGTGAGGCTGATG +
Preference number: 6 (lower is better)
Translates to: CGGRIKAPGFGG*WITCVGCVRLM
Trigger: CATCAGCCTCACGCAGCCCACACAGGTGATCCAGCAGCCCCCGAAGCCTGGAGCCTTGATCCGGCCCCCGCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000227325.2
CDS CCA 72 bp ACCTGTGTGGGCTGCGTGAGGCTGATGACCGGGGGCTaGAGGGCGCTGGTCACCGAGGCAGCTGTCTTCCCA +
Preference number: 6 (lower is better)
Translates to: TCVGCVRLMTGG*RALVTEAAVFP
Trigger: TGGGAAGACAGCTGCCTCGGTGACCAGCGCCCTCCAGCCCCCGGTCATCAGCCTCACGCAGCCCACACAGGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CCA 72 bp CTCCAGGCTTCGGGGGCTGCTGGATCACCAGTGGTGTaGGCGGCGCCTGCTTGCCAACGCCAACCTGTGTGG +
Preference number: 6 (lower is better)
Translates to: LQASGAAGSPVV*AAPACQRQPVW
Trigger: CCACACAGGTTGGCGTTGGCAAGCAGGCGCCGCCCACACCACTGGTGATCCAGCAGCCCCCGAAGCCTGGAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041618.13
CDS CCA 72 bp CAAGGCTCCAGGCTTCGGGGGCTGCTGGATCACCAGTaGTGTGGGCGGCGCCTGCTTGCCAACGCCAACCTG +
Preference number: 6 (lower is better)
Translates to: QGSRLRGLLDHQ*CGRRLLANANL
Trigger: CAGGTTGGCGTTGGCAAGCAGGCGCCGCCCACACCACTGGTGATCCAGCAGCCCCCGAAGCCTGGAGCCTTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041618.13
CDS CCA 72 bp GGGGGCCGGATCAAGGCTCCAGGCTTCGGGGGCTGCTaGATCACCTGTGTGGGCTGCGTGAGGCTGATGACC +
Preference number: 6 (lower is better)
Translates to: GGRIKAPGFGGC*ITCVGCVRLMT
Trigger: GGTCATCAGCCTCACGCAGCCCACACAGGTGATCCAGCAGCCCCCGAAGCCTGGAGCCTTGATCCGGCCCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000227325.2
CDS CAA 72 bp AGGACCATTCCTGGGGGCAGCTGGAAGTTCTGGATGTaGGTCGGGTTCTGCGGCGGCTGCGGCAGGCGCGGG +
Preference number: 6 (lower is better)
Translates to: RTIPGGSWKFWM*VGFCGGCGRRG
Trigger: CCCGCGCCTGCCGCAGCCGCCGCAGAACCCGACCAACATCCAGAACTTCCAGCTGCCCCCAGGAATGGTCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CAA 72 bp GGCTGCTGGATCACCAGTGGTGTGGGCGGCGCCTGCTaGCCAACGCCAACCTGTGTGGGCTGCGTGAGGCTG +
Preference number: 6 (lower is better)
Translates to: GCWITSGVGGAC*PTPTCVGCVRL
Trigger: CAGCCTCACGCAGCCCACACAGGTTGGCGTTGGCAAGCAGGCGCCGCCCACACCACTGGTGATCCAGCAGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041618.13
CDS GCA 72 bp GTGGCCTGCGAAGCAGGCGGCTGCTGCTGCTGGCTCTaGTGGATAAAGGCCGCGGAGTCTGGGGTCAGCTGT +
Preference number: 6 (lower is better)
Translates to: VACEAGGCCCWL*WIKAAESGVSC
Trigger: ACAGCTGACCCCAGACTCCGCGGCCTTTATCCAGCAGAGCCAGCAGCAGCAGCCGCCTGCTTCGCAGGCCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CCA 72 bp CGCACGAGGACCATTCCTGGGGGCAGCTGGAAGTTCTaGATGTTGGTCGGGTTCTGCGGCGGCTGCGGCAGG +
Preference number: 6 (lower is better)
Translates to: RTRTIPGGSWKF*MLVGFCGGCGR
Trigger: CCTGCCGCAGCCGCCGCAGAACCCGACCAACATCCAGAACTTCCAGCTGCCCCCAGGAATGGTCCTCGTGCG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 72 bp GTCAGTGCAGTCGTGGCCTGCGAAGCAGGCGGCTGCTaGTGCTGGCTCTGCTGGATAAAGGCCGCGGAGTCT +
Preference number: 6 (lower is better)
Translates to: VSAVVACEAGGC*CWLCWIKAAES
Trigger: AGACTCCGCGGCCTTTATCCAGCAGAGCCAGCAGCAGCAGCCGCCTGCTTCGCAGGCCACGACTGCACTGAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CAA 90 bp GAGCCTGCACAGTGGAGATCTGGACAGGTGGAGCACCTGTGGGGGTaGCAGGACGGGGTGCCATGGTACTCTGAGGCTGGGCCTGGGCAT +
Preference number: 6 (lower is better)
Translates to: EPAQWRSGQVEHLWG*QDGVPWYSEAGPGH
Trigger: ATGCCCAGGCCCAGCCTCAGAGTACCATGGCACCCCGTCCTGCAACCCCCACAGGTGCTCCACCTGTCCAGATCTCCACTGTGCAGGCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CAA 72 bp CAGTGGAGATCTGGACAGGTGGAGCACCTGTGGGGGTaGCAGGACGGGGTGCCATGGTACTCTGAGGCTGGG +
Preference number: 6 (lower is better)
Translates to: QWRSGQVEHLWG*QDGVPWYSEAG
Trigger: CCCAGCCTCAGAGTACCATGGCACCCCGTCCTGCAACCCCCACAGGTGCTCCACCTGTCCAGATCTCCACTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS TCA 72 bp CACCGAGGCAGCTGTCTTCCCAGCTGTACGCTGCACTaGGCTGCTCAGCACCACAGCCGTCAGTGCAGTCGT +
Preference number: 6 (lower is better)
Translates to: HRGSCLPSCTLH*AAQHHSRQCSR
Trigger: ACGACTGCACTGACGGCTGTGGTGCTGAGCAGCTCAGTGCAGCGTACAGCTGGGAAGACAGCTGCCTCGGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 72 bp AGGCAGCTGTCTTCCCAGCTGTACGCTGCACTGAGCTaGTCAGCACCACAGCCGTCAGTGCAGTCGTGGCCT +
Preference number: 6 (lower is better)
Translates to: RQLSSQLYAALS*SAPQPSVQSWP
Trigger: AGGCCACGACTGCACTGACGGCTGTGGTGCTGAGCAGCTCAGTGCAGCGTACAGCTGGGAAGACAGCTGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 72 bp CTGGTCACCGAGGCAGCTGTCTTCCCAGCTGTACGCTaGACTGAGCTGCTCAGCACCACAGCCGTCAGTGCA +
Preference number: 6 (lower is better)
Translates to: LVTEAAVFPAVR*TELLSTTAVSA
Trigger: TGCACTGACGGCTGTGGTGCTGAGCAGCTCAGTGCAGCGTACAGCTGGGAAGACAGCTGCCTCGGTGACCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CCA 72 bp TGTTCCTGGAGCCTGCACAGTGGAGATCTGGACAGGTaGAGCACCTGTGGGGGTTGCAGGACGGGGTGCCAT +
Preference number: 6 (lower is better)
Translates to: CSWSLHSGDLDR*STCGGCRTGCH
Trigger: ATGGCACCCCGTCCTGCAACCCCCACAGGTGCTCCACCTGTCCAGATCTCCACTGTGCAGGCTCCAGGAACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS TCA 72 bp CCAGATCGCTCACCACTTTCTCGTCCACCTCGCTGTTaGAGAAGACCTCGTCCAGCAGATCCGAGCCCGCCG +
Preference number: 6 (lower is better)
Translates to: PDRSPLSRPPRC*RRPRPADPSPP
Trigger: CGGCGGGCTCGGATCTGCTGGACGAGGTCTTCTTCAACAGCGAGGTGGACGAGAAAGTGGTGAGCGATCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS TCA 72 bp AGGTGTCCCTGTCTGAACAGCTGTGGCTGTTCCAAGTaGGGCTGGCTGTGCGGAGCCACCCAGAACCAGCTG +
Preference number: 6 (lower is better)
Translates to: RCPCLNSCGCSK*GWLCGATQNQL
Trigger: CAGCTGGTTCTGGGTGGCTCCGCACAGCCAGCCTCACTTGGAACAGCCACAGCTGTTCAGACAGGGACACCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CAA 72 bp CCCGATCGCTGCCAGTGCAGTGAGGTTGGCATCTCGTaGTCGCATCTGTGCCAGCTCCTGCTGCTGCATCTC +
Preference number: 6 (lower is better)
Translates to: PDRCQCSEVGIS*SHLCQLLLLHL
Trigger: GAGATGCAGCAGCAGGAGCTGGCACAGATGCGACAACGAGATGCCAACCTCACTGCACTGGCAGCGATCGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS TCA 72 bp TGGATCTGCTGTGGTGTGGTGAGCATGATCCGGTTGTaGGGCTGCCGCAATGCGACCATGGGTGTCTGCGTC +
Preference number: 6 (lower is better)
Translates to: WICCGVVSMIRL*GCRNATMGVCV
Trigger: GACGCAGACACCCATGGTCGCATTGCGGCAGCCTCACAACCGGATCATGCTCACCACACCACAGCAGATCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CCA 72 bp AGGGACTGGCTGCAGCTGGTTCAGTTGGATCTGCTGTaGTGTGGTGAGCATGATCCGGTTGTGAGGCTGCCG +
Preference number: 6 (lower is better)
Translates to: RDWLQLVQLDLL*CGEHDPVVRLP
Trigger: CGGCAGCCTCACAACCGGATCATGCTCACCACACCACAGCAGATCCAACTGAACCAGCTGCAGCCAGTCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CAA 72 bp AGCTGTAGAGGTGGTGCTGGCCCCAGGGACTGTTCGTaGAGGTGTCCCTGTCTGAACAGCTGTGGCTGTTCC +
Preference number: 6 (lower is better)
Translates to: SCRGGAGPRDCS*RCPCLNSCGCS
Trigger: GGAACAGCCACAGCTGTTCAGACAGGGACACCTCAACGAACAGTCCCTGGGGCCAGCACCACCTCTACAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CAA 72 bp TTTTTCCTGGGCCCGATCGCTGCCAGTGCAGTGAGGTaGGCATCTCGTTGTCGCATCTGTGCCAGCTCCTGC +
Preference number: 6 (lower is better)
Translates to: FFLGPIAASAVR*ASRCRICASSC
Trigger: GCAGGAGCTGGCACAGATGCGACAACGAGATGCCAACCTCACTGCACTGGCAGCGATCGGGCCCAGGAAAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CAA 90 bp ACTTTCCTCTTTTTCCTGGGCCCGATCGCTGCCAGTGCAGTGAGGTaGGCATCTCGTTGTCGCATCTGTGCCAGCTCCTGCTGCTGCATC +
Preference number: 6 (lower is better)
Translates to: TFLFFLGPIAASAVR*ASRCRICASSCCCI
Trigger: GATGCAGCAGCAGGAGCTGGCACAGATGCGACAACGAGATGCCAACCTCACTGCACTGGCAGCGATCGGGCCCAGGAAAAAGAGGAAAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS TCA 72 bp TCCTCTTTTTCCTGGGCCCGATCGCTGCCAGTGCAGTaGGGTTGGCATCTCGTTGTCGCATCTGTGCCAGCT +
Preference number: 6 (lower is better)
Translates to: SSFSWARSLPVQ*GWHLVVASVPA
Trigger: AGCTGGCACAGATGCGACAACGAGATGCCAACCTCACTGCACTGGCAGCGATCGGGCCCAGGAAAAAGAGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 72 bp AATATGAGGTCCCTGAGGTTGACCCGCGTGATTCTTTaGCGTGTGAACTGTCTGGGGGTTCCCACGCCGGAG +
Preference number: 6 (lower is better)
Translates to: NMRSLRLTRVIL*RVNCLGVPTPE
Trigger: CTCCGGCGTGGGAACCCCCAGACAGTTCACACGGCAAAGAATCACGCGGGTCAACCTCAGGGACCTCATATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CCA 72 bp ATAATAGGTGTTCCTGGAGCCTGCACAGTGGAGATCTaGACAGGTGGAGCACCTGTGGGGGTTGCAGGACGG +
Preference number: 6 (lower is better)
Translates to: IIGVPGACTVEI*TGGAPVGVAGR
Trigger: CCGTCCTGCAACCCCCACAGGTGCTCCACCTGTCCAGATCTCCACTGTGCAGGCTCCAGGAACACCTATTAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 72 bp CACTTTCCTCTTTTTCCTGGGCCCGATCGCTGCCAGTaGAGTGAGGTTGGCATCTCGTTGTCGCATCTGTGC +
Preference number: 6 (lower is better)
Translates to: HFPLFPGPDRCQ*SEVGISLSHLC
Trigger: GCACAGATGCGACAACGAGATGCCAACCTCACTGCACTGGCAGCGATCGGGCCCAGGAAAAAGAGGAAAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 72 bp GCAGTCCACTTTCCTCTTTTTCCTGGGCCCGATCGCTaGCAGTGCAGTGAGGTTGGCATCTCGTTGTCGCAT +
Preference number: 6 (lower is better)
Translates to: AVHFPLFPGPDR*QCSEVGISLSH
Trigger: ATGCGACAACGAGATGCCAACCTCACTGCACTGGCAGCGATCGGGCCCAGGAAAAAGAGGAAAGTGGACTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CCA 72 bp AGTTGGGGTCACCTGCCGTGCAATAATAGGTGTTCCTaGAGCCTGCACAGTGGAGATCTGGACAGGTGGAGC +
Preference number: 6 (lower is better)
Translates to: SWGHLPCNNRCS*SLHSGDLDRWS
Trigger: GCTCCACCTGTCCAGATCTCCACTGTGCAGGCTCCAGGAACACCTATTATTGCACGGCAGGTGACCCCAACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CAA 72 bp TGTAGTGGGCTGTACCGTCGTCTGGGCCTGAGACACTaGCTTAATTATGGTAGTTGGGGTCACCTGCCGTGC +
Preference number: 6 (lower is better)
Translates to: CSGLYRRLGLRH*LNYGSWGHLPC
Trigger: GCACGGCAGGTGACCCCAACTACCATAATTAAGCAAGTGTCTCAGGCCCAGACGACGGTACAGCCCACTACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CAA 72 bp GCAGCAGCTGCTTGTGCAGATACAGTAGACAGGGCTTaGGTTCCAGGTAACACGGTGGGTTTCACCACAGGG +
Preference number: 6 (lower is better)
Translates to: AAAACADTVDRA*VPGNTVGFTTG
Trigger: CCCTGTGGTGAAACCCACCGTGTTACCTGGAACCAAAGCCCTGTCTACTGTATCTGCACAAGCAGCTGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CAA 90 bp TTTTTCTGGGCAGCAGCTGCTTGTGCAGATACAGTAGACAGGGCTTaGGTTCCAGGTAACACGGTGGGTTTCACCACAGGGACTGGCTGC +
Preference number: 6 (lower is better)
Translates to: FFWAAAACADTVDRA*VPGNTVGFTTGTGC
Trigger: GCAGCCAGTCCCTGTGGTGAAACCCACCGTGTTACCTGGAACCAAAGCCCTGTCTACTGTATCTGCACAAGCAGCTGCTGCCCAGAAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS TCA 72 bp TGTAGGGTTGTAGTGGGCTGTACCGTCGTCTGGGCCTaGGACACTTGCTTAATTATGGTAGTTGGGGTCACC +
Preference number: 6 (lower is better)
Translates to: CRVVVGCTVVWA*DTCLIMVVGVT
Trigger: GGTGACCCCAACTACCATAATTAAGCAAGTGTCTCAGGCCCAGACGACGGTACAGCCCACTACAACCCTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 72 bp ATGCCGTGCTTTTTACCTATCTCCAGTATCCTCCTCTaGAAAGGCGCGGGGAGGAGGAAGGTGTCGTCTTTA +
Preference number: 6 (lower is better)
Translates to: MPCFLPISSILL*KGAGRRKVSSL
Trigger: TAAAGACGACACCTTCCTCCTCCCCGCGCCTTTGCAGAGGAGGATACTGGAGATAGGTAAAAAGCACGGCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CCA 72 bp CGTCTGGGCCTGAGACACTTGCTTAATTATGGTAGTTaGGGTCACCTGCCGTGCAATAATAGGTGTTCCTGG +
Preference number: 6 (lower is better)
Translates to: RLGLRHLLNYGS*GHLPCNNRCSW
Trigger: CCAGGAACACCTATTATTGCACGGCAGGTGACCCCAACTACCATAATTAAGCAAGTGTCTCAGGCCCAGACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS GCA 72 bp CACTTGCTTAATTATGGTAGTTGGGGTCACCTGCCGTaGAATAATAGGTGTTCCTGGAGCCTGCACAGTGGA +
Preference number: 6 (lower is better)
Translates to: HLLNYGSWGHLP*NNRCSWSLHSG
Trigger: TCCACTGTGCAGGCTCCAGGAACACCTATTATTGCACGGCAGGTGACCCCAACTACCATAATTAAGCAAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS TCA 72 bp GAGACACGTAACTCACTACATCTGGATGCAGTTCCGTaGTGCCGTGCTTTTTACCTATCTCCAGTATCCTCC +
Preference number: 6 (lower is better)
Translates to: ETRNSLHLDAVP*CRAFYLSPVSS
Trigger: GGAGGATACTGGAGATAGGTAAAAAGCACGGCATCACGGAACTGCATCCAGATGTAGTGAGTTACGTGTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CAA 90 bp ATCCAGTTGTTCAAAGAATTTGAGCTGAGCCCGGACATCACTCGCTaGCTCGTATCTGTCGTCGTCCTTATAAGAGAAGTTTTTCTGCTG +
Preference number: 6 (lower is better)
Translates to: IQLFKEFELSPDITR*LVSVVVLIREVFLL
Trigger: CAGCAGAAAAACTTCTCTTATAAGGACGACGACAGATACGAGCAAGCGAGTGATGTCCGGGCTCAGCTCAAATTCTTTGAACAACTGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS TCA 72 bp TCTGCTTTTCAATCTGATCCAGTTGTTCAAAGAATTTaGGCTGAGCCCGGACATCACTCGCTTGCTCGTATC +
Preference number: 6 (lower is better)
Translates to: SAFQSDPVVQRI*AEPGHHSLARI
Trigger: GATACGAGCAAGCGAGTGATGTCCGGGCTCAGCTCAAATTCTTTGAACAACTGGATCAGATTGAAAAGCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2
CDS CAA 72 bp TTCAAAGAATTTGAGCTGAGCCCGGACATCACTCGCTaGCTCGTATCTGTCGTCGTCCTTATAAGAGAAGTT +
Preference number: 6 (lower is better)
Translates to: FKEFELSPDITR*LVSVVVLIREV
Trigger: AACTTCTCTTATAAGGACGACGACAGATACGAGCAAGCGAGTGATGTCCGGGCTCAGCTCAAATTCTTTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041618.13
ENSMUST00000227325.2