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Pregenerated sensors for TAF13 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000048100

Ensembl transcript IDs: ENSMUST00000143054.2

Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGAAGGCCAGAAGAGGACGCTGGATCCCCTGGAACTGGAGTTAGATaGTTGTGGGGCACCATGTTGAGTGCTAGGATTGAATCTACATCC +
Preference number: 1 (lower is better)
Translates to: RRPEEDAGSPGTGVR*LWGTMLSARIESTS
Trigger: GGATGTAGATTCAATCCTAGCACTCAACATGGTGCCCCACAACCATCTAACTCCAGTTCCAGGGGATCCAGCGTCCTCTTCTGGCCTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR CCA 90 bp GTATGTACAGAGCTTAGATGCCAACCCAAAGGCAGAACCCAAAGGTaGTTCTTCCTTCCACCATCTGGGTCCAAGGGATTAAACTCAAAT +
Preference number: 1 (lower is better)
Translates to: VCTELRCQPKGRTQR*FFLPPSGSKGLNSN
Trigger: ATTTGAGTTTAATCCCTTGGACCCAGATGGTGGAAGGAAGAACCACCTTTGGGTTCTGCCTTTGGGTTGGCATCTAAGCTCTGTACATAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR TCA 90 bp CAATTCAGATATGGTCAGATAAAGACAGGCAACGGAGGCTCCAGTTaGAGACCTCTTTCATTGCATACCGAGCTATCATGTTACTGCAGA +
Preference number: 1 (lower is better)
Translates to: QFRYGQIKTGNGGSS*RPLSLHTELSCYCR
Trigger: TCTGCAGTAACATGATAGCTCGGTATGCAATGAAAGAGGTCTTCAACTGGAGCCTCCGTTGCCTGTCTTTATCTGACCATATCTGAATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR CCA 90 bp TTCTTTAATACACTTTTCGGAATAAAACAGGCCCTGATTAGCCACTaGTATATGCCTTTATTCCCAGCACTGGAGAGGCAAAGGCAGGTA +
Preference number: 1 (lower is better)
Translates to: FFNTLFGIKQALISH*YMPLFPALERQRQV
Trigger: TACCTGCCTTTGCCTCTCCAGTGCTGGGAATAAAGGCATATACCAGTGGCTAATCAGGGCCTGTTTTATTCCGAAAAGTGTATTAAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR GCA 90 bp AGCACAGCCTCACCATTTATAAAATCAAAGGACATTCAGATTGTATaGTATGCAGCAATGGTATACAGCTTGGAACACACACGTCTACCA +
Preference number: 1 (lower is better)
Translates to: STASPFIKSKDIQIV*YAAMVYSLEHTRLP
Trigger: TGGTAGACGTGTGTGTTCCAAGCTGTATACCATTGCTGCATAGCATACAATCTGAATGTCCTTTGATTTTATAAATGGTGAGGCTGTGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR GCA 90 bp AGCCTCACCATTTATAAAATCAAAGGACATTCAGATTGTATGCTATaGAGCAATGGTATACAGCTTGGAACACACACGTCTACCAGAAGA +
Preference number: 1 (lower is better)
Translates to: SLTIYKIKGHSDCML*SNGIQLGTHTSTRR
Trigger: TCTTCTGGTAGACGTGTGTGTTCCAAGCTGTATACCATTGCTGCATAGCATACAATCTGAATGTCCTTTGATTTTATAAATGGTGAGGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR-3UTR CCA 90 bp TGCCTGAGAAGGCCAGAAGAGGACGCTGGATCCCCTGGAACTGGAGTTAGATGGACAGCCAGAAACACCTaGGCTGGCATCGGCTCTTTA +
Preference number: 2 (lower is better)
Translates to: CLRRPEEDAGSPGTGVRWTARNT*AGIGSL
Trigger: TAAAGAGCCGATGCCAGCCCAGGTGTTTCTGGCTGT...CCATCTAACTCCAGTTCCAGGGGATCCAGCGTCCTCTTCTGGCCTTCTCAGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR CAA 90 bp AGGCCAGAAGAGGACGCTGGATCCCCTGGAACTGGAGTTAGATGGTaGTGGGGCACCATGTTGAGTGCTAGGATTGAATCTACATCCCTC +
Preference number: 2 (lower is better)
Translates to: RPEEDAGSPGTGVRW*WGTMLSARIESTSL
Trigger: GAGGGATGTAGATTCAATCCTAGCACTCAACATGGTGCCCCACAACCATCTAACTCCAGTTCCAGGGGATCCAGCGTCCTCTTCTGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR-3UTR TCA 90 bp TGTGAGCATGTTGTGTACCACTTGCTTGCCTGGTGCCTGAGAAGGCCAGAAGAGAACGGAGGCTCCAGTTaGAGACCTCTTTCATTGCAT +
Preference number: 2 (lower is better)
Translates to: CEHVVYHLLAWCLRRPEENGGSS*RPLSLH
Trigger: ATGCAATGAAAGAGGTCTTCAACTGGAGCCTCCGTT...CTCTTCTGGCCTTCTCAGGCACCAGGCAAGCAAGTGGTACACAACATGCTCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR-3UTR TCA 90 bp AGGCAGAGACAGATGGATCTCTGTGAGTTTGAGGCCAACCTGGTTCTAGAAAGCTGTCCTCTAAAGCCTTaGGATACACAGAGCACAGCC +
Preference number: 2 (lower is better)
Translates to: RQRQMDLCEFEANLVLESCPLKP*DTQSTA
Trigger: GGCTGTGCTCTGTGTATCTCAAGGCTTTAGAGGACA...GCTTTCTAGAACCAGGTTGGCCTCAAACTCACAGAGATCCATCTGTCTCTGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR-3UTR GCA 90 bp CAAAGGTGGTTCTTCCTTCCACCATCTGGGTCCAAGGGATTAAACTCAAATTGCCACTTGCTTGCCTGGTaGCTGAGAAGGCCAGAAGAG +
Preference number: 2 (lower is better)
Translates to: QRWFFLPPSGSKGLNSNCHLLAW*LRRPEE
Trigger: CTCTTCTGGCCTTCTCAGGCACCAGGCAAGCAAGTG...GCAATTTGAGTTTAATCCCTTGGACCCAGATGGTGGAAGGAAGAACCACCTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR-3UTR GCA 90 bp TGCCTGAGAAGGCCAGAAGAGGACGCTGGATCCCCTGGAACTGGAGTTAGATGGTCAGATTGTATGCTATaGAGCAATGGTATACAGCTT +
Preference number: 2 (lower is better)
Translates to: CLRRPEEDAGSPGTGVRWSDCML*SNGIQL
Trigger: AAGCTGTATACCATTGCTGCATAGCATACAATCTGA...CCATCTAACTCCAGTTCCAGGGGATCCAGCGTCCTCTTCTGGCCTTCTCAGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR-3UTR GCA 90 bp TGTGAGCATGTTGTGTACCACTTGCTTGCCTGGTGCCTGAGAAGGCCAGAAGAGACCGCGAAAATGGTTTaGACAGCCACATACAGATTT +
Preference number: 2 (lower is better)
Translates to: CEHVVYHLLAWCLRRPEETAKMV*TATYRF
Trigger: AAATCTGTATGTGGCTGTGCAAACCATTTTCGCGGT...CTCTTCTGGCCTTCTCAGGCACCAGGCAAGCAAGTGGTACACAACATGCTCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR CAA 90 bp AGCTCATTCTCTTTAATAACTCCCCCACCACTGTCCTCTAAAGCCTaGAGATACACAGAGCACAGCCTCACCATTTATAAAATCAAAGGA +
Preference number: 2 (lower is better)
Translates to: SSFSLITPPPLSSKA*RYTEHSLTIYKIKG
Trigger: TCCTTTGATTTTATAAATGGTGAGGCTGTGCTCTGTGTATCTCAAGGCTTTAGAGGACAGTGGTGGGGGAGTTATTAAAGAGAATGAGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR CAA 90 bp GTGGTTCTTCCTTCCACCATCTGGGTCCAAGGGATTAAACTCAAATaGCTATTCTTGGTAACAAGTCCATCTAATCAATGTGCCATCTTG +
Preference number: 2 (lower is better)
Translates to: VVLPSTIWVQGIKLK*LFLVTSPSNQCAIL
Trigger: CAAGATGGCACATTGATTAGATGGACTTGTTACCAAGAATAGCAATTTGAGTTTAATCCCTTGGACCCAGATGGTGGAAGGAAGAACCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR-3UTR CCA 90 bp ATAAAACAGGCCCTGATTAGCCACTGGTATATGCCTTTATTCCCAGCACTGGAGGAAGCAATTCAGATATaGTCAGATAAAGACAGGCAA +
Preference number: 2 (lower is better)
Translates to: IKQALISHWYMPLFPALEEAIQI*SDKDRQ
Trigger: TTGCCTGTCTTTATCTGACCATATCTGAATTGCTTC...CTCCAGTGCTGGGAATAAAGGCATATACCAGTGGCTAATCAGGGCCTGTTTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR GCA 72 bp TCTTGTGAGCATGTTGTGTACCACTTGCTTGCCTGGTaGCTGAGAAGGCCAGAAGAGGACGCTGGATCCCCT +
Preference number: 3 (lower is better)
Translates to: SCEHVVYHLLAW*LRRPEEDAGSP
Trigger: AGGGGATCCAGCGTCCTCTTCTGGCCTTCTCAGGCACCAGGCAAGCAAGTGGTACACAACATGCTCACAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR-3UTR CAA 90 bp CATGTTGTGTACCACTTGCTTGCCTGGTGCCTGAGAAGGCCAGAAGAGGACGCTCTGTCCTCTAAAGCCTaGAGATACACAGAGCACAGC +
Preference number: 3 (lower is better)
Translates to: HVVYHLLAWCLRRPEEDALSSKA*RYTEHS
Trigger: GCTGTGCTCTGTGTATCTCAAGGCTTTAGAGGACAG...AGCGTCCTCTTCTGGCCTTCTCAGGCACCAGGCAAGCAAGTGGTACACAACATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR CCA 72 bp GAAGAGGACGCTGGATCCCCTGGAACTGGAGTTAGATaGTTGTGGGGCACCATGTTGAGTGCTAGGATTGAA +
Preference number: 3 (lower is better)
Translates to: EEDAGSPGTGVR*LWGTMLSARIE
Trigger: TTCAATCCTAGCACTCAACATGGTGCCCCACAACCATCTAACTCCAGTTCCAGGGGATCCAGCGTCCTCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR-3UTR CAA 90 bp GCCTGGTGCCTGAGAAGGCCAGAAGAGGACGCTGGATCCCCTGGAACTGGAGTTACTGAGGCATTTGTATaGGAAGCTTTACAGTCATCA +
Preference number: 3 (lower is better)
Translates to: AWCLRRPEEDAGSPGTGVTEAFV*EALQSS
Trigger: TGATGACTGTAAAGCTTCCAATACAAATGCCTCAGT...AACTCCAGTTCCAGGGGATCCAGCGTCCTCTTCTGGCCTTCTCAGGCACCAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR-3UTR CAA 90 bp TGCCTGAGAAGGCCAGAAGAGGACGCTGGATCCCCTGGAACTGGAGTTAGATGGCAAAGGACATTCAGATaGTATGCTATGCAGCAATGG +
Preference number: 3 (lower is better)
Translates to: CLRRPEEDAGSPGTGVRWQRTFR*YAMQQW
Trigger: CCATTGCTGCATAGCATACAATCTGAATGTCCTTTG...CCATCTAACTCCAGTTCCAGGGGATCCAGCGTCCTCTTCTGGCCTTCTCAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR CCA 72 bp GACGCTGGATCCCCTGGAACTGGAGTTAGATGGTTGTaGGGCACCATGTTGAGTGCTAGGATTGAATCTACA +
Preference number: 3 (lower is better)
Translates to: DAGSPGTGVRWL*GTMLSARIEST
Trigger: TGTAGATTCAATCCTAGCACTCAACATGGTGCCCCACAACCATCTAACTCCAGTTCCAGGGGATCCAGCGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR CCA 72 bp GAGCTTAGATGCCAACCCAAAGGCAGAACCCAAAGGTaGTTCTTCCTTCCACCATCTGGGTCCAAGGGATTA +
Preference number: 3 (lower is better)
Translates to: ELRCQPKGRTQR*FFLPPSGSKGL
Trigger: TAATCCCTTGGACCCAGATGGTGGAAGGAAGAACCACCTTTGGGTTCTGCCTTTGGGTTGGCATCTAAGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR-3UTR CAA 90 bp TGTGAGCATGTTGTGTACCACTTGCTTGCCTGGTGCCTGAGAAGGCCAGAAGAGCCACTACTGAGGCATTaGTATTGGAAGCTTTACAGT +
Preference number: 3 (lower is better)
Translates to: CEHVVYHLLAWCLRRPEEPLLRH*YWKLYS
Trigger: ACTGTAAAGCTTCCAATACAAATGCCTCAGTAGTGG...CTCTTCTGGCCTTCTCAGGCACCAGGCAAGCAAGTGGTACACAACATGCTCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR-3UTR CAA 90 bp ATAAAACAGGCCCTGATTAGCCACTGGTATATGCCTTTATTCCCAGCACTGGAGGTGGAACCGCATGGTTaGCAATGCTTTAACTTAGGA +
Preference number: 3 (lower is better)
Translates to: IKQALISHWYMPLFPALEVEPHG*QCFNLG
Trigger: TCCTAAGTTAAAGCATTGCAAACCATGCGGTTCCAC...CTCCAGTGCTGGGAATAAAGGCATATACCAGTGGCTAATCAGGGCCTGTTTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR TCA 72 bp TATGGTCAGATAAAGACAGGCAACGGAGGCTCCAGTTaGAGACCTCTTTCATTGCATACCGAGCTATCATGT +
Preference number: 3 (lower is better)
Translates to: YGQIKTGNGGSS*RPLSLHTELSC
Trigger: ACATGATAGCTCGGTATGCAATGAAAGAGGTCTTCAACTGGAGCCTCCGTTGCCTGTCTTTATCTGACCATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR GCA 72 bp CTTCCACCCTTTCGGGTGGAACCGCATGGTTTGCAATaGTTTAACTTAGGAGTTATTAAAGCCAGGAAGCAA +
Preference number: 3 (lower is better)
Translates to: LPPFRVEPHGLQ*FNLGVIKARKQ
Trigger: TTGCTTCCTGGCTTTAATAACTCCTAAGTTAAAGCATTGCAAACCATGCGGTTCCACCCGAAAGGGTGGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR CCA 72 bp AGGCAGAACCCAAAGGTGGTTCTTCCTTCCACCATCTaGGTCCAAGGGATTAAACTCAAATTGCTATTCTTG +
Preference number: 3 (lower is better)
Translates to: RQNPKVVLPSTI*VQGIKLKLLFL
Trigger: CAAGAATAGCAATTTGAGTTTAATCCCTTGGACCCAGATGGTGGAAGGAAGAACCACCTTTGGGTTCTGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR CCA 72 bp ACACTTTTCGGAATAAAACAGGCCCTGATTAGCCACTaGTATATGCCTTTATTCCCAGCACTGGAGAGGCAA +
Preference number: 3 (lower is better)
Translates to: TLFGIKQALISH*YMPLFPALERQ
Trigger: TTGCCTCTCCAGTGCTGGGAATAAAGGCATATACCAGTGGCTAATCAGGGCCTGTTTTATTCCGAAAAGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR CCA 72 bp AATCAAAGGACATTCAGATTGTATGCTATGCAGCAATaGTATACAGCTTGGAACACACACGTCTACCAGAAG +
Preference number: 3 (lower is better)
Translates to: NQRTFRLYAMQQ*YTAWNTHVYQK
Trigger: CTTCTGGTAGACGTGTGTGTTCCAAGCTGTATACCATTGCTGCATAGCATACAATCTGAATGTCCTTTGATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR GCA 72 bp TCACCATTTATAAAATCAAAGGACATTCAGATTGTATaGTATGCAGCAATGGTATACAGCTTGGAACACACA +
Preference number: 3 (lower is better)
Translates to: SPFIKSKDIQIV*YAAMVYSLEHT
Trigger: TGTGTGTTCCAAGCTGTATACCATTGCTGCATAGCATACAATCTGAATGTCCTTTGATTTTATAAATGGTGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
CDS-3UTR CCA 90 bp CATGTTGTGTACCACTTGCTTGCCTGGTGCCTGAGAAGGCCAGAAGAGGACGCTTCTCCTCCTCAAAGGTaGGGTCTTCCTCCTCATCTG +
Preference number: 4 (lower is better)
Translates to: HVVYHLLAWCLRRPEEDASPPQR*GLPPHL
Trigger: CAGATGAGGAGGAAGACCCCACCTTTGAGGAGGAGA...AGCGTCCTCTTCTGGCCTTCTCAGGCACCAGGCAAGCAAGTGGTACACAACATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
CDS-3UTR TCA 90 bp GCCTGGTGCCTGAGAAGGCCAGAAGAGGACGCTGGATCCCCTGGAACTGGAGTTATCGACATTGCCTTGTaGGTCATTTCAGTGATGAAC +
Preference number: 4 (lower is better)
Translates to: AWCLRRPEEDAGSPGTGVIDIAL*VISVMN
Trigger: GTTCATCACTGAAATGACTCACAAGGCAATGTCGAT...AACTCCAGTTCCAGGGGATCCAGCGTCCTCTTCTGGCCTTCTCAGGCACCAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR CAA 72 bp GAGGACGCTGGATCCCCTGGAACTGGAGTTAGATGGTaGTGGGGCACCATGTTGAGTGCTAGGATTGAATCT +
Preference number: 4 (lower is better)
Translates to: EDAGSPGTGVRW*WGTMLSARIES
Trigger: AGATTCAATCCTAGCACTCAACATGGTGCCCCACAACCATCTAACTCCAGTTCCAGGGGATCCAGCGTCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
CDS-3UTR GCA 90 bp GCCTGGTGCCTGAGAAGGCCAGAAGAGGACGCTGGATCCCCTGGAACTGGAGTTTCTTCCAATCGACATTaGCTTGTGAGTCATTTCAGT +
Preference number: 4 (lower is better)
Translates to: AWCLRRPEEDAGSPGTGVSSNRH*LVSHFS
Trigger: ACTGAAATGACTCACAAGGCAATGTCGATTGGAAGA...AACTCCAGTTCCAGGGGATCCAGCGTCCTCTTCTGGCCTTCTCAGGCACCAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
CDS-3UTR GCA 90 bp TGCCTGAGAAGGCCAGAAGAGGACGCTGGATCCCCTGGAACTGGAGTTAGATGGACAATATCTTCAACTTaGACTCGACCTTGTCTTCCA +
Preference number: 4 (lower is better)
Translates to: CLRRPEEDAGSPGTGVRWTISST*TRPCLP
Trigger: TGGAAGACAAGGTCGAGTGCAAGTTGAAGATATTGT...CCATCTAACTCCAGTTCCAGGGGATCCAGCGTCCTCTTCTGGCCTTCTCAGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
CDS-3UTR CCA 90 bp TTAGGAGTTATTAAAGCCAGGAAGCAATTCAGATATGGTCAGATAAAGACAGGCCTCTTTCTCTTCCCCTaGCCACCTTCCGCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: LGVIKARKQFRYGQIKTGLFLFP*PPSAPP
Trigger: AGGAGGAGCGGAAGGTGGCCAGGGGAAGAGAAAGAG...GCCTGTCTTTATCTGACCATATCTGAATTGCTTCCTGGCTTTAATAACTCCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR CAA 72 bp TTAAGCCCTGCCGTTCCCACTACTGAGGCATTTGTATaGGAAGCTTTACAGTCATCAAGGAAGACGAGGACT +
Preference number: 4 (lower is better)
Translates to: LSPAVPTTEAFV*EALQSSRKTRT
Trigger: AGTCCTCGTCTTCCTTGATGACTGTAAAGCTTCCAATACAAATGCCTCAGTAGTGGGAACGGCAGGGCTTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR CAA 72 bp ATACTACTTCCACCCTTTCGGGTGGAACCGCATGGTTaGCAATGCTTTAACTTAGGAGTTATTAAAGCCAGG +
Preference number: 4 (lower is better)
Translates to: ILLPPFRVEPHG*QCFNLGVIKAR
Trigger: CCTGGCTTTAATAACTCCTAAGTTAAAGCATTGCAAACCATGCGGTTCCACCCGAAAGGGTGGAAGTAGTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR CAA 72 bp TCTTTAATAACTCCCCCACCACTGTCCTCTAAAGCCTaGAGATACACAGAGCACAGCCTCACCATTTATAAA +
Preference number: 4 (lower is better)
Translates to: SLITPPPLSSKA*RYTEHSLTIYK
Trigger: TTTATAAATGGTGAGGCTGTGCTCTGTGTATCTCAAGGCTTTAGAGGACAGTGGTGGGGGAGTTATTAAAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
3UTR CAA 72 bp TTCTTGGTAACAAGTCCATCTAATCAATGTGCCATCTaGTCAGCACTCAGCTGCCATTTTTCATTTTTATAT +
Preference number: 4 (lower is better)
Translates to: FLVTSPSNQCAI*SALSCHFSFLY
Trigger: ATATAAAAATGAAAAATGGCAGCTGAGTGCTGACAAGATGGCACATTGATTAGATGGACTTGTTACCAAGAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2
CDS-3UTR CAA 90 bp ACAGAGAAACCCTGTCTCATAAGAACCATGCACAAACAAGCAAACACAAACTCAGACAATATCTTCAACTaGCACTCGACCTTGTCTTCC +
Preference number: 5 (lower is better)
Translates to: TEKPCLIRTMHKQANTNSDNIFN*HSTLSS
Trigger: GGAAGACAAGGTCGAGTGCAAGTTGAAGATATTGTC...TGAGTTTGTGTTTGCTTGTTTGTGCATGGTTCTTATGAGACAGGGTTTCTCTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143054.2