Pregenerated sensors for TADA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026563Ensembl transcript IDs: ENSMUST00000027846.8, ENSMUST00000132817.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTTAAGATCCCTACTCAGACACAGACCAATGAGTGCTCCTATACGTaGGGACACAGACACACAGGTCATCAGTCAGACATATTAATGCCT | + |
|
Preference number: 1 (lower is better) Translates to: LKIPTQTQTNECSYT*GHRHTGHQSDILMP Trigger: AGGCATTAATATGTCTGACTGATGACCTGTGTGTCTGTGTCCCCACGTATAGGAGCACTCATTGGTCTGTGTCTGAGTAGGGATCTTAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| 3UTR-3UTR TCA 90 bp | AGCAAAGCAAGAAGCAGAGAGCTAAATCCTGCTCTCTGGAGTGAAAGCGGGTTGCAGAACATACATCACTaGACACACAGTGGTCCTGCT | + |
|
Preference number: 2 (lower is better) Translates to: SKARSRELNPALWSESGLQNIHH*THSGPA Trigger: AGCAGGACCACTGTGTGTTCAGTGATGTATGTTCTG...CAACCCGCTTTCACTCCAGAGAGCAGGATTTAGCTCTCTGCTTCTTGCTTTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| 3UTR-3UTR CCA 90 bp | AGAATGCACATTGTCCTGTGTGAGGAGTCTGTGAGCTTCAAGGTCGAACTCCTCACCACAACTTCAGGTTaGCCCAGTATCTATTTAAAT | + |
|
Preference number: 2 (lower is better) Translates to: RMHIVLCEESVSFKVELLTTTSG*PSIYLN Trigger: ATTTAAATAGATACTGGGCCAACCTGAAGTTGTGGT...GAGGAGTTCGACCTTGAAGCTCACAGACTCCTCACACAGGACAATGTGCATTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132817.2 |
||
| 3UTR CCA 72 bp | CCTACTCAGACACAGACCAATGAGTGCTCCTATACGTaGGGACACAGACACACAGGTCATCAGTCAGACATA | + |
|
Preference number: 3 (lower is better) Translates to: PTQTQTNECSYT*GHRHTGHQSDI Trigger: TATGTCTGACTGATGACCTGTGTGTCTGTGTCCCCACGTATAGGAGCACTCATTGGTCTGTGTCTGAGTAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| 3UTR-3UTR CAA 90 bp | GTCCTGTGTGAGGAGTCTGTGAGCTTCAAGGTCGAACTCCTCCTTGCTGATCTTAACCACAACTTCAGGTaGGCCCAGTATCTATTTAAA | + |
|
Preference number: 3 (lower is better) Translates to: VLCEESVSFKVELLLADLNHNFR*AQYLFK Trigger: TTTAAATAGATACTGGGCCAACCTGAAGTTGTGGTT...AAGATCAGCAAGGAGGAGTTCGACCTTGAAGCTCACAGACTCCTCACACAGGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132817.2 |
||
| 3UTR TCA 72 bp | CACAGCATCTTTATTGTACGATGTCACCTATCTTACTaGCAGACCAGATACACCTCAGGTGTCTTAAGATCC | + |
|
Preference number: 3 (lower is better) Translates to: HSIFIVRCHLSY*QTRYTSGVLRS Trigger: GGATCTTAAGACACCTGAGGTGTATCTGGTCTGTCAGTAAGATAGGTGACATCGTACAATAAAGATGCTGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| 3UTR-3UTR CAA 90 bp | AGGCTATTCCACCAATATGCAGAGTATAGTTCTTTAGGAAAAGCAGAGTTTACGCTATACACTTCAGTTTaGAAATGTGGACTCAAAAGC | + |
|
Preference number: 3 (lower is better) Translates to: RLFHQYAEYSSLGKAEFTLYTSV*KCGLKS Trigger: GCTTTTGAGTCCACATTTCAAAACTGAAGTGTATAG...CGTAAACTCTGCTTTTCCTAAAGAACTATACTCTGCATATTGGTGGAATAGCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR GCA 90 bp | CTTAAGATCCCTACTCAGACACAGACCAATGAGTGCTCCTATACGTGGGGACACTTTTCCAGGCTTGGCTaGAGAGCCCCCTGTCCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: LKIPTQTQTNECSYTWGHFSRLG*RAPCPG Trigger: CCCTGGACAGGGGGCTCTGCAGCCAAGCCTGGAAAA...GTGTCCCCACGTATAGGAGCACTCATTGGTCTGTGTCTGAGTAGGGATCTTAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR CCA 90 bp | CTTAAGATCCCTACTCAGACACAGACCAATGAGTGCTCCTATACGTGGGGACACACGCTGGGCTCTGATTaGCACATGGAGCAGAGAAGG | + |
|
Preference number: 4 (lower is better) Translates to: LKIPTQTQTNECSYTWGHTLGSD*HMEQRR Trigger: CCTTCTCTGCTCCATGTGCCAATCAGAGCCCAGCGT...GTGTCCCCACGTATAGGAGCACTCATTGGTCTGTGTCTGAGTAGGGATCTTAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR CCA 90 bp | GGACTCAAGGATCAAAGCAAAGCAAGAAGCAGAGAGCTAAATCCTGCTCTCTGGTTGGCTGCCAGGCGCTaGCGGTGGACTTTGTCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: GLKDQSKARSRELNPALWLAARR*RWTLSC Trigger: ACAAGACAAAGTCCACCGCCAGCGCCTGGCAGCCAA...CCAGAGAGCAGGATTTAGCTCTCTGCTTCTTGCTTTGCTTTGATCCTTGAGTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR CCA 90 bp | TACACCTCAGGTGTCTTAAGATCCCTACTCAGACACAGACCAATGAGTGCTCCTGCAAAAGTCCTTCTTTaGCTGCCAGGCGCTGGCGGT | + |
|
Preference number: 4 (lower is better) Translates to: YTSGVLRSLLRHRPMSAPAKVLL*LPGAGG Trigger: ACCGCCAGCGCCTGGCAGCCAAAGAAGGACTTTTGC...AGGAGCACTCATTGGTCTGTGTCTGAGTAGGGATCTTAAGACACCTGAGGTGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR CCA 90 bp | GAGTGCTCCTATACGTGGGGACACAGACACACAGGTCATCAGTCAGACATATTACAAGTTGGCCTCGCGTaGGAAGCATCATGGTGTGTG | + |
|
Preference number: 4 (lower is better) Translates to: ECSYTWGHRHTGHQSDILQVGLA*EASWCV Trigger: CACACACCATGATGCTTCCCACGCGAGGCCAACTTG...TAATATGTCTGACTGATGACCTGTGTGTCTGTGTCCCCACGTATAGGAGCACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR CCA 90 bp | GAGTGCTCCTATACGTGGGGACACAGACACACAGGTCATCAGTCAGACATATTAGCTCTGATTGGCACATaGAGCAGAGAAGGCTGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: ECSYTWGHRHTGHQSDILALIGT*SREGWR Trigger: CCTCCAGCCTTCTCTGCTCCATGTGCCAATCAGAGC...TAATATGTCTGACTGATGACCTGTGTGTCTGTGTCCCCACGTATAGGAGCACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR TCA 90 bp | GAGTGCTCCTATACGTGGGGACACAGACACACAGGTCATCAGTCAGACATATTATGTGTGAGGAGTCTGTaGGCTTCAAGGTCGAACTCC | + |
|
Preference number: 4 (lower is better) Translates to: ECSYTWGHRHTGHQSDILCVRSL*ASRSNS Trigger: GGAGTTCGACCTTGAAGCTCACAGACTCCTCACACA...TAATATGTCTGACTGATGACCTGTGTGTCTGTGTCCCCACGTATAGGAGCACTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR TCA 90 bp | GAGTGCTCCTATACGTGGGGACACAGACACACAGGTCATCAGTCAGACATATTAGCACATTGTCCTGTGTaGGGAGTCTGTGAGCTTCAA | + |
|
Preference number: 4 (lower is better) Translates to: ECSYTWGHRHTGHQSDILAHCPV*GVCELQ Trigger: TTGAAGCTCACAGACTCCTCACACAGGACAATGTGC...TAATATGTCTGACTGATGACCTGTGTGTCTGTGTCCCCACGTATAGGAGCACTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR CCA 90 bp | TTCCACCAATATGCAGAGTATAGTTCTTTAGGAAAAGCAGAGTTTACGCTGCCATGGGTTTTCCAGGCTTaGCTGCAGAGCCCCCTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: FHQYAEYSSLGKAEFTLPWVFQA*LQSPLS Trigger: GGACAGGGGGCTCTGCAGCCAAGCCTGGAAAACCCA...TGGCAGCGTAAACTCTGCTTTTCCTAAAGAACTATACTCTGCATATTGGTGGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR GCA 90 bp | TTCCACCAATATGCAGAGTATAGTTCTTTAGGAAAAGCAGAGTTTACGCTGCCAAGGAATGCAGCCTGCTaGTCAGCATCGTCGGGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: FHQYAEYSSLGKAEFTLPRNAAC*SASSGC Trigger: ACACCCCGACGATGCTGAGCAGCAGGCTGCATTCCT...TGGCAGCGTAAACTCTGCTTTTCCTAAAGAACTATACTCTGCATATTGGTGGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR GCA 90 bp | TTATTGTACGATGTCACCTATCTTACTGACAGACCAGATACACCTCAGGTGTCTAATAGGAATGCAGCCTaGTGCTCAGCATCGTCGGGG | + |
|
Preference number: 4 (lower is better) Translates to: LLYDVTYLTDRPDTPQVSNRNAA*CSASSG Trigger: CCCCGACGATGCTGAGCAGCAGGCTGCATTCCTATT...AGACACCTGAGGTGTATCTGGTCTGTCAGTAAGATAGGTGACATCGTACAATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR CCA 90 bp | TTATTGTACGATGTCACCTATCTTACTGACAGACCAGATACACCTCAGGTGTCTAAGTCGTCATCACCCTaGGGCTCCTTTGCCACGAAC | + |
|
Preference number: 4 (lower is better) Translates to: LLYDVTYLTDRPDTPQVSKSSSP*GSFATN Trigger: GTTCGTGGCAAAGGAGCCCCAGGGTGATGACGACTT...AGACACCTGAGGTGTATCTGGTCTGTCAGTAAGATAGGTGACATCGTACAATAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR CCA 90 bp | TTCCACCAATATGCAGAGTATAGTTCTTTAGGAAAAGCAGAGTTTACGCTGCCAGCCAGGCGCTGGCGGTaGACTTTGTCTTGTTGTAGC | + |
|
Preference number: 4 (lower is better) Translates to: FHQYAEYSSLGKAEFTLPARRWR*TLSCCS Trigger: GCTACAACAAGACAAAGTCCACCGCCAGCGCCTGGC...TGGCAGCGTAAACTCTGCTTTTCCTAAAGAACTATACTCTGCATATTGGTGGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR TCA 90 bp | GGACTCAAGGATCAAAGCAAAGCAAGAAGCAGAGAGCTAAATCCTGCTCTCTGGCCTTCTCGACACAACTaGGGTCAGAATATCTTTGAG | + |
|
Preference number: 4 (lower is better) Translates to: GLKDQSKARSRELNPALWPSRHN*GQNIFE Trigger: CTCAAAGATATTCTGACCTCAGTTGTGTCGAGAAGG...CCAGAGAGCAGGATTTAGCTCTCTGCTTCTTGCTTTGCTTTGATCCTTGAGTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR CCA 90 bp | GGACTCAAGGATCAAAGCAAAGCAAGAAGCAGAGAGCTAAATCCTGCTCTCTGGAGATCCAGCACCCTCTaGTGTAGAAACCAAAATCTG | + |
|
Preference number: 4 (lower is better) Translates to: GLKDQSKARSRELNPALWRSSTL*CRNQNL Trigger: CAGATTTTGGTTTCTACACCAGAGGGTGCTGGATCT...CCAGAGAGCAGGATTTAGCTCTCTGCTTCTTGCTTTGCTTTGATCCTTGAGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| 3UTR CAA 72 bp | GCTTCAAGGTCGAACTCCTCCTTGCTGATCTTCTGCTaGAACCACAACTTCAGGTTGGCCCAGTATCTATTT | + |
|
Preference number: 4 (lower is better) Translates to: ASRSNSSLLIFC*NHNFRLAQYLF Trigger: AAATAGATACTGGGCCAACCTGAAGTTGTGGTTCAAGCAGAAGATCAGCAAGGAGGAGTTCGACCTTGAAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132817.2 |
||
| CDS-3UTR GCA 90 bp | TTATTGTACGATGTCACCTATCTTACTGACAGACCAGATACACCTCAGGTGTCTACTTCCCTGTGGACCTaGAAAGCTTCAAACAGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: LLYDVTYLTDRPDTPQVSTSLWT*KASNRS Trigger: TGACCTGTTTGAAGCTTTGCAGGTCCACAGGGAAGT...AGACACCTGAGGTGTATCTGGTCTGTCAGTAAGATAGGTGACATCGTACAATAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR GCA 90 bp | TTATTGTACGATGTCACCTATCTTACTGACAGACCAGATACACCTCAGGTGTCTTCCTTGCTGATCTTCTaGTTGAACCACAACTTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: LLYDVTYLTDRPDTPQVSSLLIF*LNHNFR Trigger: CCTGAAGTTGTGGTTCAAGCAGAAGATCAGCAAGGA...AGACACCTGAGGTGTATCTGGTCTGTCAGTAAGATAGGTGACATCGTACAATAA 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR TCA 90 bp | ATAACTACATCTAAGAATTGGACTCAAGGATCAAAGCAAAGCAAGAAGCAGAGAAGGTCAGAATATCTTTaGGGTGATTCTCCACGGCAT | + |
|
Preference number: 4 (lower is better) Translates to: ITTSKNWTQGSKQSKKQRRSEYL*GDSPRH Trigger: ATGCCGTGGAGAATCACCTCAAAGATATTCTGACCT...TCTCTGCTTCTTGCTTTGCTTTGATCCTTGAGTCCAATTCTTAGATGTAGTTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR CCA 90 bp | ATAACTACATCTAAGAATTGGACTCAAGGATCAAAGCAAAGCAAGAAGCAGAGAACCACAACTTCAGGTTaGCCCAGTATTGTTTCACGT | + |
|
Preference number: 4 (lower is better) Translates to: ITTSKNWTQGSKQSKKQRTTTSG*PSIVSR Trigger: ACGTGAAACAATACTGGGCCAACCTGAAGTTGTGGT...TCTCTGCTTCTTGCTTTGCTTTGATCCTTGAGTCCAATTCTTAGATGTAGTTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS CCA 90 bp | AGCATCGTCGGGGTGTGGCTGAGACGCTGGGCTCTGATTGGCACATaGAGCAGAGAAGGCTGGAGGGCCTTCAACCAAGTTGTTGTAAGC | + |
|
Preference number: 5 (lower is better) Translates to: SIVGVWLRRWALIGT*SREGWRAFNQVVVS Trigger: GCTTACAACAACTTGGTTGAAGGCCCTCCAGCCTTCTCTGCTCCATGTGCCAATCAGAGCCCAGCGTCTCAGCCACACCCCGACGATGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR CAA 90 bp | AGCAAAGCAAGAAGCAGAGAGCTAAATCCTGCTCTCTGGAGTGAAAGCGGGTTGAGCAAAAGTCCTTCTTaGGCTGCCAGGCGCTGGCGG | + |
|
Preference number: 5 (lower is better) Translates to: SKARSRELNPALWSESGLSKSPS*AARRWR Trigger: CCGCCAGCGCCTGGCAGCCAAAGAAGGACTTTTGCT...CAACCCGCTTTCACTCCAGAGAGCAGGATTTAGCTCTCTGCTTCTTGCTTTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR CAA 90 bp | CTTAAGATCCCTACTCAGACACAGACCAATGAGTGCTCCTATACGTGGGGACACTCGCTCAAGTTCTTCTaGGCTGCCTCCAGCTCGCTC | + |
|
Preference number: 5 (lower is better) Translates to: LKIPTQTQTNECSYTWGHSLKFF*AASSSL Trigger: GAGCGAGCTGGAGGCAGCCAAGAAGAACTTGAGCGA...GTGTCCCCACGTATAGGAGCACTCATTGGTCTGTGTCTGAGTAGGGATCTTAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR CAA 90 bp | AGAATGCACATTGTCCTGTGTGAGGAGTCTGTGAGCTTCAAGGTCGAACTCCTCTCGCTCAAGTTCTTCTaGGCTGCCTCCAGCTCGCTC | + |
|
Preference number: 5 (lower is better) Translates to: RMHIVLCEESVSFKVELLSLKFF*AASSSL Trigger: GAGCGAGCTGGAGGCAGCCAAGAAGAACTTGAGCGA...GAGGAGTTCGACCTTGAAGCTCACAGACTCCTCACACAGGACAATGTGCATTCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132817.2 |
||
| CDS-3UTR CAA 90 bp | GAGTGCTCCTATACGTGGGGACACAGACACACAGGTCATCAGTCAGACATATTACATTCTCCCTTCAAGTaGGCCTCGCGTGGGAAGCAT | + |
|
Preference number: 5 (lower is better) Translates to: ECSYTWGHRHTGHQSDILHSPFK*ASRGKH Trigger: ATGCTTCCCACGCGAGGCCAACTTGAAGGGAGAATG...TAATATGTCTGACTGATGACCTGTGTGTCTGTGTCCCCACGTATAGGAGCACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR CAA 90 bp | AGCAAAGCAAGAAGCAGAGAGCTAAATCCTGCTCTCTGGAGTGAAAGCGGGTTGAGGTCGAACTCCTCCTaGCTGATCTTCTGCTTGAAC | + |
|
Preference number: 5 (lower is better) Translates to: SKARSRELNPALWSESGLRSNSS*LIFCLN Trigger: GTTCAAGCAGAAGATCAGCAAGGAGGAGTTCGACCT...CAACCCGCTTTCACTCCAGAGAGCAGGATTTAGCTCTCTGCTTCTTGCTTTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR CAA 90 bp | ATGCACATTGTCCTGTGTGAGGAGTCTGTGAGCTTCAAGGTCGAACTCCTCCTTCTTGGTGTGACAGTCTaGAGGCAGGACTATCAAATG | + |
|
Preference number: 5 (lower is better) Translates to: MHIVLCEESVSFKVELLLLGVTV*RQDYQM Trigger: CATTTGATAGTCCTGCCTCAAGACTGTCACACCAAG...AAGGAGGAGTTCGACCTTGAAGCTCACAGACTCCTCACACAGGACAATGTGCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132817.2 |
||
| CDS-3UTR CAA 90 bp | ACATCTAAGAATTGGACTCAAGGATCAAAGCAAAGCAAGAAGCAGAGAGCTAAATTGGGTTTTCCAGGCTaGGCTGCAGAGCCCCCTGTC | + |
|
Preference number: 5 (lower is better) Translates to: TSKNWTQGSKQSKKQRAKLGFPG*AAEPPV Trigger: GACAGGGGGCTCTGCAGCCAAGCCTGGAAAACCCAA...TTTAGCTCTCTGCTTCTTGCTTTGCTTTGATCCTTGAGTCCAATTCTTAGATGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR CAA 90 bp | ATAACTACATCTAAGAATTGGACTCAAGGATCAAAGCAAAGCAAGAAGCAGAGACACCCTGGGGCTCCTTaGCCACGAACTGCTGAGCTC | + |
|
Preference number: 5 (lower is better) Translates to: ITTSKNWTQGSKQSKKQRHPGAP*PRTAEL Trigger: GAGCTCAGCAGTTCGTGGCAAAGGAGCCCCAGGGTG...TCTCTGCTTCTTGCTTTGCTTTGATCCTTGAGTCCAATTCTTAGATGTAGTTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR CAA 90 bp | TTCCACCAATATGCAGAGTATAGTTCTTTAGGAAAAGCAGAGTTTACGCTGCCACGCTGGCGGTGGACTTaGTCTTGTTGTAGCTCTTCG | + |
|
Preference number: 5 (lower is better) Translates to: FHQYAEYSSLGKAEFTLPRWRWT*SCCSSS Trigger: CGAAGAGCTACAACAAGACAAAGTCCACCGCCAGCG...TGGCAGCGTAAACTCTGCTTTTCCTAAAGAACTATACTCTGCATATTGGTGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR CAA 90 bp | ACATCTAAGAATTGGACTCAAGGATCAAAGCAAAGCAAGAAGCAGAGAGCTAAACAGGTTGGCCCAGTATaGTTTCACGTTGTCCCCCAG | + |
|
Preference number: 5 (lower is better) Translates to: TSKNWTQGSKQSKKQRAKQVGPV*FHVVPQ Trigger: CTGGGGGACAACGTGAAACAATACTGGGCCAACCTG...TTTAGCTCTCTGCTTCTTGCTTTGCTTTGATCCTTGAGTCCAATTCTTAGATGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR CAA 90 bp | TTATTGTACGATGTCACCTATCTTACTGACAGACCAGATACACCTCAGGTGTCTAACCACAACTTCAGGTaGGCCCAGTATTGTTTCACG | + |
|
Preference number: 5 (lower is better) Translates to: LLYDVTYLTDRPDTPQVSNHNFR*AQYCFT Trigger: CGTGAAACAATACTGGGCCAACCTGAAGTTGTGGTT...AGACACCTGAGGTGTATCTGGTCTGTCAGTAAGATAGGTGACATCGTACAATAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS-3UTR CAA 90 bp | TTCCACCAATATGCAGAGTATAGTTCTTTAGGAAAAGCAGAGTTTACGCTGCCATTGCTGATCTTCTGCTaGAACCACAACTTCAGGTTG | + |
|
Preference number: 5 (lower is better) Translates to: FHQYAEYSSLGKAEFTLPLLIFC*NHNFRL Trigger: CAACCTGAAGTTGTGGTTCAAGCAGAAGATCAGCAA...TGGCAGCGTAAACTCTGCTTTTCCTAAAGAACTATACTCTGCATATTGGTGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS CCA 72 bp | GGGGTGTGGCTGAGACGCTGGGCTCTGATTGGCACATaGAGCAGAGAAGGCTGGAGGGCCTTCAACCAAGTT | + |
|
Preference number: 6 (lower is better) Translates to: GVWLRRWALIGT*SREGWRAFNQV Trigger: AACTTGGTTGAAGGCCCTCCAGCCTTCTCTGCTCCATGTGCCAATCAGAGCCCAGCGTCTCAGCCACACCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS CCA 72 bp | CGCTGGGCTCTGATTGGCACATGGAGCAGAGAAGGCTaGAGGGCCTTCAACCAAGTTGTTGTAAGCCACCAC | + |
|
Preference number: 6 (lower is better) Translates to: RWALIGTWSREG*RAFNQVVVSHH Trigger: GTGGTGGCTTACAACAACTTGGTTGAAGGCCCTCCAGCCTTCTCTGCTCCATGTGCCAATCAGAGCCCAGCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||
| CDS TCA 72 bp | CGCTGGCGGTGGACTTTGTCTTGTTGTAGCTCTTCGTaGTTGGGGTGCCAGAGTTTCATGATGATCCTTTCA | + |
|
Preference number: 6 (lower is better) Translates to: RWRWTLSCCSSS*LGCQSFMMILS Trigger: TGAAAGGATCATCATGAAACTCTGGCACCCCAATCACGAAGAGCTACAACAAGACAAAGTCCACCGCCAGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027846.8 |
||