RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TACC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000065954

Ensembl transcript IDs: ENSMUST00000084030.6, ENSMUST00000084512.11, ENSMUST00000209827.2, ENSMUST00000210016.2, ENSMUST00000210488.2, ENSMUST00000210767.2, ENSMUST00000210933.2, ENSMUST00000211622.2

Found 329 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GACTGTGAGCCGCAGAGTGCCCTTTCTAGCCTGCGCCATCTTTGCTaGAAGGGAAGTCTTTGGCCTGCCATGCTCAGCCCAGGGCTGCCC +
Preference number: 1 (lower is better)
Translates to: DCEPQSALSSLRHLC*KGSLWPAMLSPGLP
Trigger: GGGCAGCCCTGGGCTGAGCATGGCAGGCCAAAGACTTCCCTTTCAGCAAAGATGGCGCAGGCTAGAAAGGGCACTCTGCGGCTCACAGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 90 bp AGCAGCAGCAGCAGCAGCGGCAGCGCAGCGGCGAAGCGGGGACGATaGCAGCAGCAGGCATGTGCTTTGAAACAATTACTTCTCTCTGCA +
Preference number: 1 (lower is better)
Translates to: SSSSSSGSAAAKRGR*QQQACALKQLLLSA
Trigger: TGCAGAGAGAAGTAATTGTTTCAAAGCACATGCCTGCTGCTGCCATCGTCCCCGCTTCGCCGCTGCGCTGCCGCTGCTGCTGCTGCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR TCA 90 bp GGTTCAGGCCAGACCTCAGCCCCACACTTGGCGGCCTCTGAGTGGTaGAAACATCACACAGCCTACCTGAGGCCAACATGGCAGCAGCAT +
Preference number: 1 (lower is better)
Translates to: GSGQTSAPHLAASEW*KHHTAYLRPTWQQH
Trigger: ATGCTGCTGCCATGTTGGCCTCAGGTAGGCTGTGTGATGTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTGGCCTGAACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR TCA 90 bp CAGGGAAGGTTCAGGCCAGACCTCAGCCCCACACTTGGCGGCCTCTaGGTGGTGAAAACATCACACAGCCTACCTGAGGCCAACATGGCA +
Preference number: 1 (lower is better)
Translates to: QGRFRPDLSPTLGGL*VVKTSHSLPEANMA
Trigger: TGCCATGTTGGCCTCAGGTAGGCTGTGTGATGTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTGGCCTGAACCTTCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR GCA 90 bp GTGCCTGAATCCTGTCCCAAGGACTGCAAGGGTCAAAGCCAAGGCTaGGGGTGTGACCGTCACACTGCCCTGTATCTGGTCTGGATGTGG +
Preference number: 1 (lower is better)
Translates to: VPESCPKDCKGQSQG*GCDRHTALYLVWMW
Trigger: CCACATCCAGACCAGATACAGGGCAGTGTGACGGTCACACCCGCAGCCTTGGCTTTGACCCTTGCAGTCCTTGGGACAGGATTCAGGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR TCA 90 bp ATCCTGTCCCAAGGACTGCAAGGGTCAAAGCCAAGGCTGCGGGTGTaGCCGTCACACTGCCCTGTATCTGGTCTGGATGTGGTTTCAGAG +
Preference number: 1 (lower is better)
Translates to: ILSQGLQGSKPRLRV*PSHCPVSGLDVVSE
Trigger: CTCTGAAACCACATCCAGACCAGATACAGGGCAGTGTGACGGTCACACCCGCAGCCTTGGCTTTGACCCTTGCAGTCCTTGGGACAGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR GCA 90 bp AACACGCGTCCAAATCGAGAGGCTGAGCTTCGTATTTCTTCACTTTaGAGCCGCTCCTTGGGGTTTGGCCTCGGGTTCTGCCAATCCCGG +
Preference number: 1 (lower is better)
Translates to: NTRPNREAELRISSL*SRSLGFGLGFCQSR
Trigger: CCGGGATTGGCAGAACCCGAGGCCAAACCCCAAGGAGCGGCTGCAAAGTGAAGAAATACGAAGCTCAGCCTCTCGATTTGGACGCGTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210767.2
3UTR TCA 90 bp CCTCCCACTAGCTGGGATACCCCATGCTTCCACTCACTCCTTGTTTaGAGCAAGAACTCACATAGTCCAGGCTGGCCTCCAAGAGGCTAT +
Preference number: 1 (lower is better)
Translates to: PPTSWDTPCFHSLLV*SKNSHSPGWPPRGY
Trigger: ATAGCCTCTTGGAGGCCAGCCTGGACTATGTGAGTTCTTGCTTCAAACAAGGAGTGAGTGGAAGCATGGGGTATCCCAGCTAGTGGGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 90 bp ATCGAGAGGCTGAGCTTCGTATTTCTTCACTTTGCAGCCGCTCCTTaGGGTTTGGCCTCGGGTTCTGCCAATCCCGGTGATGAATCACAA +
Preference number: 1 (lower is better)
Translates to: IERLSFVFLHFAAAP*GLASGSANPGDESQ
Trigger: TTGTGATTCATCACCGGGATTGGCAGAACCCGAGGCCAAACCCCAAGGAGCGGCTGCAAAGTGAAGAAATACGAAGCTCAGCCTCTCGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210767.2
3UTR TCA 90 bp CCTTCTCAGAAACTACGAGAAGGCAGGGGCCTAAGAGAGGCATCCTaGCAGTTGGTATTGAAGACACCATACAGGGAAGGTTCAGGCCAG +
Preference number: 1 (lower is better)
Translates to: PSQKLREGRGLREAS*QLVLKTPYREGSGQ
Trigger: CTGGCCTGAACCTTCCCTGTATGGTGTCTTCAATACCAACTGTCAGGATGCCTCTCTTAGGCCCCTGCCTTCTCGTAGTTTCTGAGAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR GCA 90 bp CCGTCTGCCAGTGTGCAGGGAGGGACAGCCACTGCTCCTCTCCTATaGCTAACATACAGCACAGCACAGGACACTTTAAAAATATGCATG +
Preference number: 1 (lower is better)
Translates to: PSASVQGGTATAPLL*LTYSTAQDTLKICM
Trigger: CATGCATATTTTTAAAGTGTCCTGTGCTGTGCTGTATGTTAGGCATAGGAGAGGAGCAGTGGCTGTCCCTCCCTGCACACTGGCAGACGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR TCA 90 bp TATGTATTGGCAAACACAGACTCGCTAACAGCAGGACTGGAAAGCTaGCCGATGCCTTGGAGACTTAACAGGGTGCCTGAATCCTGTCCC +
Preference number: 1 (lower is better)
Translates to: YVLANTDSLTAGLES*PMPWRLNRVPESCP
Trigger: GGGACAGGATTCAGGCACCCTGTTAAGTCTCCAAGGCATCGGTCAGCTTTCCAGTCCTGCTGTTAGCGAGTCTGTGTTTGCCAATACATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 90 bp AGCCTTTCTCCTGTGTTTTATATCTTGTTTGACAGTGCTGGGGATTaGCAACAGTGCCTGGCACATGGTCGGCAAACGCTACCACCAGAC +
Preference number: 1 (lower is better)
Translates to: SLSPVFYILFDSAGD*QQCLAHGRQTLPPD
Trigger: GTCTGGTGGTAGCGTTTGCCGACCATGTGCCAGGCACTGTTGCCAATCCCCAGCACTGTCAAACAAGATATAAAACACAGGAGAAAGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR TCA 90 bp AATGTCACAAACTTGGGAAAAGCAAAGACGACGACGACAGCTAGATaGACTCAGGCTGTAGAAGCACAAGCCAGACCCAGCAGCAGCTCT +
Preference number: 1 (lower is better)
Translates to: NVTNLGKAKTTTTAR*TQAVEAQARPSSSS
Trigger: AGAGCTGCTGCTGGGTCTGGCTTGTGCTTCTACAGCCTGAGTTCATCTAGCTGTCGTCGTCGTCTTTGCTTTTCCCAAGTTTGTGACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 90 bp GTCAAAGCCAAGGCTGCGGGTGTGACCGTCACACTGCCCTGTATCTaGTCTGGATGTGGTTTCAGAGTTCAGATTTCTATGTGTCCATTT +
Preference number: 1 (lower is better)
Translates to: VKAKAAGVTVTLPCI*SGCGFRVQISMCPF
Trigger: AAATGGACACATAGAAATCTGAACTCTGAAACCACATCCAGACCAGATACAGGGCAGTGTGACGGTCACACCCGCAGCCTTGGCTTTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 90 bp TGTTTTATATCTTGTTTGACAGTGCTGGGGATTGGCAACAGTGCCTaGCACATGGTCGGCAAACGCTACCACCAGACACAGCTTTCAAGT +
Preference number: 1 (lower is better)
Translates to: CFISCLTVLGIGNSA*HMVGKRYHQTQLSS
Trigger: ACTTGAAAGCTGTGTCTGGTGGTAGCGTTTGCCGACCATGTGCCAGGCACTGTTGCCAATCCCCAGCACTGTCAAACAAGATATAAAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 90 bp CTGGGGTTGTTGGGACACAGTGGGAGCAAATGTGCAATAAACACTTaGCACGTTAGTACAGTGGGTATGTATTGGCAAACACAGACTCGC +
Preference number: 1 (lower is better)
Translates to: LGLLGHSGSKCAINT*HVSTVGMYWQTQTR
Trigger: GCGAGTCTGTGTTTGCCAATACATACCCACTGTACTAACGTGCCAAGTGTTTATTGCACATTTGCTCCCACTGTGTCCCAACAACCCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 90 bp TCAATTACTTCTGCTACCAACTGTTCATCGGCTTCTCGAGATTCTTaGGGTTTGGCCTCGGGTTCTGCCAATCCCGGTGATGAATCACAA +
Preference number: 1 (lower is better)
Translates to: SITSATNCSSASRDS*GLASGSANPGDESQ
Trigger: TTGTGATTCATCACCGGGATTGGCAGAACCCGAGGCCAAACCCCAAGAATCTCGAGAAGCCGATGAACAGTTGGTAGCAGAAGTAATTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209827.2
3UTR TCA 90 bp CTGTTTCTCAAGATGCCTGAATCCACATTAGAGCTTCAGAGAATATaGAGTGTAGGGGAATTCCCGGTCTCCAAACAGAGCGAGCACTGC +
Preference number: 1 (lower is better)
Translates to: LFLKMPESTLELQRI*SVGEFPVSKQSEHC
Trigger: GCAGTGCTCGCTCTGTTTGGAGACCGGGAATTCCCCTACACTTCATATTCTCTGAAGCTCTAATGTGGATTCAGGCATCTTGAGAAACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR GCA 90 bp TACTCTGTTCTAGCAGAAGGCCTATGGAGAGGCACTGGCTCTATATaGAGTTCCCTTTTCTCTCCACACAGGAAGGACTTAGTAGTAAAT +
Preference number: 1 (lower is better)
Translates to: YSVLAEGLWRGTGSI*SSLFSPHRKDLVVN
Trigger: ATTTACTACTAAGTCCTTCCTGTGTGGAGAGAAAAGGGAACTGCATATAGAGCCAGTGCCTCTCCATAGGCCTTCTGCTAGAACAGAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR TCA 90 bp CCTGTGCTTCAGGACTTCCTAATTTGGTCTGTTTCTCAAGATGCCTaGATCCACATTAGAGCTTCAGAGAATATGAAGTGTAGGGGAATT +
Preference number: 1 (lower is better)
Translates to: PVLQDFLIWSVSQDA*IHIRASENMKCRGI
Trigger: AATTCCCCTACACTTCATATTCTCTGAAGCTCTAATGTGGATTCAGGCATCTTGAGAAACAGACCAAATTAGGAAGTCCTGAAGCACAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp AGCTGGCAGCCAGGTCGCAGGGCAGAGCTGTCTTGTGACTCCCTCTCCACCAGCGCGAAGCGGGGACGATaGCAGCAGCAGGCATGTGCT +
Preference number: 2 (lower is better)
Translates to: SWQPGRRAELSCDSLSTSAKRGR*QQQACA
Trigger: AGCACATGCCTGCTGCTGCCATCGTCCCCGCTTCGC...GCTGGTGGAGAGGGAGTCACAAGACAGCTCTGCCCTGCGACCTGGCTGCCAGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp AAGGTTCAGGCCAGACCTCAGCCCCACACTTGGCGGCCTCTGAGTGGTGAAAACGCGAAGCGGGGACGATaGCAGCAGCAGGCATGTGCT +
Preference number: 2 (lower is better)
Translates to: KVQARPQPHTWRPLSGENAKRGR*QQQACA
Trigger: AGCACATGCCTGCTGCTGCCATCGTCCCCGCTTCGC...GTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTGGCCTGAACCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp CACACGACGACGTGGAGGCCAGCTTCTCCTCATCAGTCGCGTGGCCGTCCCTGTCGTGGCCGTCCCTGTTaGGAATCTCTGAGATCTTCG +
Preference number: 2 (lower is better)
Translates to: HTTTWRPASPHQSRGRPCRGRPC*ESLRSS
Trigger: CGAAGATCTCAGAGATTCCCAACAGGGACGGCCACG...ACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGGCCTCCACGTCGTCGTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000210767.2
ENSMUST00000211622.2
3UTR-3UTR GCA 90 bp AAGGTTCAGGCCAGACCTCAGCCCCACACTTGGCGGCCTCTGAGTGGTGAAAACGGGAAGTCTTTGGCCTaGCATGCTCAGCCCAGGGCT +
Preference number: 2 (lower is better)
Translates to: KVQARPQPHTWRPLSGENGKSLA*HAQPRA
Trigger: AGCCCTGGGCTGAGCATGGCAGGCCAAAGACTTCCC...GTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTGGCCTGAACCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR GCA 90 bp AAGGTTCAGGCCAGACCTCAGCCCCACACTTGGCGGCCTCTGAGTGGTGAAAACTATTCAAGGCCCGTCTaGCAGTGTGCAGGGAGGGAC +
Preference number: 2 (lower is better)
Translates to: KVQARPQPHTWRPLSGENYSRPV*QCAGRD
Trigger: GTCCCTCCCTGCACACTGGCAGACGGGCCTTGAATA...GTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTGGCCTGAACCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp AAGGTTCAGGCCAGACCTCAGCCCCACACTTGGCGGCCTCTGAGTGGTGAAAACTCCTGCCTCCACCTCTaGAGAGTTGAGATCACAGGC +
Preference number: 2 (lower is better)
Translates to: KVQARPQPHTWRPLSGENSCLHL*RVEITG
Trigger: GCCTGTGATCTCAACTCTCCAGAGGTGGAGGCAGGA...GTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTGGCCTGAACCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp AAGGTTCAGGCCAGACCTCAGCCCCACACTTGGCGGCCTCTGAGTGGTGAAAACATTGGCAACAGTGCCTaGCACATGGTCGGCAAACGC +
Preference number: 2 (lower is better)
Translates to: KVQARPQPHTWRPLSGENIGNSA*HMVGKR
Trigger: GCGTTTGCCGACCATGTGCCAGGCACTGTTGCCAAT...GTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTGGCCTGAACCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR TCA 90 bp AAGGTTCAGGCCAGACCTCAGCCCCACACTTGGCGGCCTCTGAGTGGTGAAAACCTGCGCCATCTTTGCTaGAAGGGAAGTCTTTGGCCT +
Preference number: 2 (lower is better)
Translates to: KVQARPQPHTWRPLSGENLRHLC*KGSLWP
Trigger: AGGCCAAAGACTTCCCTTTCAGCAAAGATGGCGCAG...GTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTGGCCTGAACCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp CCAGTGAGCGAGCGATTGAGCAAGCTTTTGTACACAGGCATGTCTGCAGGGGGATCCCAGGGGCTGGTTTaGAGAACGAGCCAGAGGACT +
Preference number: 2 (lower is better)
Translates to: PVSERLSKLLYTGMSAGGSQGLV*RTSQRT
Trigger: AGTCCTCTGGCTCGTTCTCCAAACCAGCCCCTGGGA...TCCCCCTGCAGACATGCCTGTGTACAAAAGCTTGCTCAATCGCTCGCTCACTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR TCA 90 bp CCAGTGAGCGAGCGATTGAGCAAGCTTTTGTACACAGGCATGTCTGCAGGGGGAAACTCTGGGCTCAAGTaGTCTTCCTGTCCTGCCTCC +
Preference number: 2 (lower is better)
Translates to: PVSERLSKLLYTGMSAGGNSGLK*SSCPAS
Trigger: GGAGGCAGGACAGGAAGATCACTTGAGCCCAGAGTT...TCCCCCTGCAGACATGCCTGTGTACAAAAGCTTGCTCAATCGCTCGCTCACTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR GCA 90 bp GCACTCCCCAGTAGAGCTAGGTTCCCAGCCCCTACCGAGTCTGAAGCTGGCTTTGGTCTTATCTGGATATaGCTCAGGGGAAAAGCGGCA +
Preference number: 2 (lower is better)
Translates to: ALPSRARFPAPTESEAGFGLIWI*LRGKAA
Trigger: TGCCGCTTTTCCCCTGAGGCATATCCAGATAAGACC...AAAGCCAGCTTCAGACTCGGTAGGGGCTGGGAACCTAGCTCTACTGGGGAGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp AAGGTTCAGGCCAGACCTCAGCCCCACACTTGGCGGCCTCTGAGTGGTGAAAACAGGCTCTTCACTCTCTaGCTGGTAATGTGGGCTTCT +
Preference number: 2 (lower is better)
Translates to: KVQARPQPHTWRPLSGENRLFTL*LVMWAS
Trigger: AGAAGCCCACATTACCAGCCAGAGAGTGAAGAGCCT...GTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTGGCCTGAACCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp GCCTTCTCAGAAACTACGAGAAGGCAGGGGCCTAAGAGAGGCATCCTGACAGTTACAGTGCCTGGCACATaGTCGGCAAACGCTACCACC +
Preference number: 2 (lower is better)
Translates to: AFSETTRRQGPKRGILTVTVPGT*SANATT
Trigger: GGTGGTAGCGTTTGCCGACCATGTGCCAGGCACTGT...AACTGTCAGGATGCCTCTCTTAGGCCCCTGCCTTCTCGTAGTTTCTGAGAAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CAA 90 bp TCCTGCCTCCCACTAGCTGGGATACCCCATGCTTCCACTCACTCCTaGTTTGAAGCAAGAACTCACATAGTCCAGGCTGGCCTCCAAGAG +
Preference number: 2 (lower is better)
Translates to: SCLPLAGIPHASTHS*FEARTHIVQAGLQE
Trigger: CTCTTGGAGGCCAGCCTGGACTATGTGAGTTCTTGCTTCAAACAAGGAGTGAGTGGAAGCATGGGGTATCCCAGCTAGTGGGAGGCAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR TCA 90 bp TTAGTGATTATCTCTTCTCTGATCAACGTGAGCACGGCAGTCTTGTCTGCTTCGGACCCCAGCCCCCGCTaGCTTCTGAGCACACGACGA +
Preference number: 2 (lower is better)
Translates to: LVIISSLINVSTAVLSASDPSPR*LLSTRR
Trigger: TCGTCGTGTGCTCAGAAGTCAGCGGGGGCTGGGGTC...CGAAGCAGACAAGACTGCCGTGCTCACGTTGATCAGAGAAGAGATAATCACTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
3UTR-3UTR GCA 90 bp GCCTTCTCAGAAACTACGAGAAGGCAGGGGCCTAAGAGAGGCATCCTGACAGTTTTTAGTCCCTGCCTCTaGCTCCAGGGTGCTAGGGTT +
Preference number: 2 (lower is better)
Translates to: AFSETTRRQGPKRGILTVFSPCL*LQGARV
Trigger: AACCCTAGCACCCTGGAGGCAGAGGCAGGGACTAAA...AACTGTCAGGATGCCTCTCTTAGGCCCCTGCCTTCTCGTAGTTTCTGAGAAGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp GCCTTCTCAGAAACTACGAGAAGGCAGGGGCCTAAGAGAGGCATCCTGACAGTTTCCTGCCTCCACCTCTaGAGAGTTGAGATCACAGGC +
Preference number: 2 (lower is better)
Translates to: AFSETTRRQGPKRGILTVSCLHL*RVEITG
Trigger: GCCTGTGATCTCAACTCTCCAGAGGTGGAGGCAGGA...AACTGTCAGGATGCCTCTCTTAGGCCCCTGCCTTCTCGTAGTTTCTGAGAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp GCCAGCTTCTCCTCATCAGTCGCGTGGCCGTCCCTGTTGGGAATCTCTGAGATCGAGAGGCGATCTGATTaGAGTTTCAGCTTCAGGAGT +
Preference number: 2 (lower is better)
Translates to: ASFSSSVAWPSLLGISEIERRSD*SFSFRS
Trigger: ACTCCTGAAGCTGAAACTCCAATCAGATCGCCTCTC...GATCTCAGAGATTCCCAACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210767.2
3UTR-3UTR GCA 90 bp GCCTTCTCAGAAACTACGAGAAGGCAGGGGCCTAAGAGAGGCATCCTGACAGTTGTGCCCTTTCTAGCCTaGGCCATCTTTGCTGAAAGG +
Preference number: 2 (lower is better)
Translates to: AFSETTRRQGPKRGILTVVPFLA*AIFAER
Trigger: CCTTTCAGCAAAGATGGCGCAGGCTAGAAAGGGCAC...AACTGTCAGGATGCCTCTCTTAGGCCCCTGCCTTCTCGTAGTTTCTGAGAAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp GCACTCCCCAGTAGAGCTAGGTTCCCAGCCCCTACCGAGTCTGAAGCTGGCTTTACATCAAACAGGAGCTaGGAAGATAAACCCACACAG +
Preference number: 2 (lower is better)
Translates to: ALPSRARFPAPTESEAGFTSNRS*EDKPTQ
Trigger: CTGTGTGGGTTTATCTTCCCAGCTCCTGTTTGATGT...AAAGCCAGCTTCAGACTCGGTAGGGGCTGGGAACCTAGCTCTACTGGGGAGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp GCCTTCTCAGAAACTACGAGAAGGCAGGGGCCTAAGAGAGGCATCCTGACAGTTGTGACCTTGGACTTATaGTCATCCTGCCTCCACCTC +
Preference number: 2 (lower is better)
Translates to: AFSETTRRQGPKRGILTVVTLDL*SSCLHL
Trigger: GAGGTGGAGGCAGGATGACCATAAGTCCAAGGTCAC...AACTGTCAGGATGCCTCTCTTAGGCCCCTGCCTTCTCGTAGTTTCTGAGAAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CAA 90 bp ACTTCTGCTACCAACTGTTCATCGGCTTCTCGAGATTCTTGGGGTTaGGCCTCGGGTTCTGCCAATCCCGGTGATGAATCACAAGACTCC +
Preference number: 2 (lower is better)
Translates to: TSATNCSSASRDSWG*ASGSANPGDESQDS
Trigger: GGAGTCTTGTGATTCATCACCGGGATTGGCAGAACCCGAGGCCAAACCCCAAGAATCTCGAGAAGCCGATGAACAGTTGGTAGCAGAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209827.2
3UTR-3UTR TCA 90 bp GCCTTCTCAGAAACTACGAGAAGGCAGGGGCCTAAGAGAGGCATCCTGACAGTTGGCACAATTCATTGCTaGAGTCGGCTCATGCAATGG +
Preference number: 2 (lower is better)
Translates to: AFSETTRRQGPKRGILTVGTIHC*SRLMQW
Trigger: CCATTGCATGAGCCGACTTCAGCAATGAATTGTGCC...AACTGTCAGGATGCCTCTCTTAGGCCCCTGCCTTCTCGTAGTTTCTGAGAAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR TCA 90 bp AAGGTTCAGGCCAGACCTCAGCCCCACACTTGGCGGCCTCTGAGTGGTGAAAACTGCATTAAGCCACTGTaGCAAAATTCAGAGCCCAAA +
Preference number: 2 (lower is better)
Translates to: KVQARPQPHTWRPLSGENCIKPL*QNSEPK
Trigger: TTTGGGCTCTGAATTTTGTCACAGTGGCTTAATGCA...GTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTGGCCTGAACCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR GCA 90 bp GCCTTCTCAGAAACTACGAGAAGGCAGGGGCCTAAGAGAGGCATCCTGACAGTTGGTCTTATCTGGATATaGCTCAGGGGAAAAGCGGCA +
Preference number: 2 (lower is better)
Translates to: AFSETTRRQGPKRGILTVGLIWI*LRGKAA
Trigger: TGCCGCTTTTCCCCTGAGGCATATCCAGATAAGACC...AACTGTCAGGATGCCTCTCTTAGGCCCCTGCCTTCTCGTAGTTTCTGAGAAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR GCA 90 bp AAGGTTCAGGCCAGACCTCAGCCCCACACTTGGCGGCCTCTGAGTGGTGAAAACGGACAGGTTAAGAATTaGCTGTACTTTGGCAAAGCA +
Preference number: 2 (lower is better)
Translates to: KVQARPQPHTWRPLSGENGQVKN*LYFGKA
Trigger: TGCTTTGCCAAAGTACAGGCAATTCTTAACCTGTCC...GTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTGGCCTGAACCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR TCA 90 bp TCCCCTTCCCAGCATTCAAGCAGTCTTTGTTTAGAATATTCCCAGGGGCTGGTTCCACCTCTGGAGAGTTaGGATCACAGGCATGCACTC +
Preference number: 2 (lower is better)
Translates to: SPSQHSSSLCLEYSQGLVPPLES*DHRHAL
Trigger: GAGTGCATGCCTGTGATCTCAACTCTCCAGAGGTGG...AACCAGCCCCTGGGAATATTCTAAACAAAGACTGCTTGAATGCTGGGAAGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp AAGGTTCAGGCCAGACCTCAGCCCCACACTTGGCGGCCTCTGAGTGGTGAAAACTGCCTGTTAGATAGATaGAAAGAAGTCACTAGCATC +
Preference number: 2 (lower is better)
Translates to: KVQARPQPHTWRPLSGENCLLDR*KEVTSI
Trigger: GATGCTAGTGACTTCTTTCCATCTATCTAACAGGCA...GTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTGGCCTGAACCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CAA 90 bp TTGGCCTCGGGTTCTGCCAATCCCGGTGATGAATCACAAGACTCCTaGAGAGGCGATCTGATTGGAGTTTCAGCTTCAGGAGTCTCAAAA +
Preference number: 2 (lower is better)
Translates to: LASGSANPGDESQDS*RGDLIGVSASGVSK
Trigger: TTTTGAGACTCCTGAAGCTGAAACTCCAATCAGATCGCCTCTCAAGGAGTCTTGTGATTCATCACCGGGATTGGCAGAACCCGAGGCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000209827.2
ENSMUST00000210767.2
3UTR-3UTR TCA 90 bp AAATGTGCAATAAACACTTGGCACGTTAGTACAGTGGGTATGTATTGGCAAACAATCCAAGGCCAGCTCTaGGGGAGGCCACGCTGCTGC +
Preference number: 2 (lower is better)
Translates to: KCAINTWHVSTVGMYWQTIQGQL*GRPRCC
Trigger: GCAGCAGCGTGGCCTCCCTCAGAGCTGGCCTTGGAT...TGTTTGCCAATACATACCCACTGTACTAACGTGCCAAGTGTTTATTGCACATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR TCA 90 bp CTAGTTCATGTCCCCTGTACGGCAGCTTCATTTAGCAGGGCCTGTTATTCAAGGAGCCCATCTCCAGTATaGAAGCAGTTGCTGTTGCTG +
Preference number: 2 (lower is better)
Translates to: LVHVPCTAASFSRACYSRSPSPV*KQLLLL
Trigger: CAGCAACAGCAACTGCTTTCATACTGGAGATGGGCT...CCTTGAATAACAGGCCCTGCTAAATGAAGCTGCCGTACAGGGGACATGAACTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR GCA 90 bp CCAGTGAGCGAGCGATTGAGCAAGCTTTTGTACACAGGCATGTCTGCAGGGGGAGCAGCAGCAGGCATGTaGTTTGAAACAATTACTTCT +
Preference number: 2 (lower is better)
Translates to: PVSERLSKLLYTGMSAGGAAAGM*FETITS
Trigger: AGAAGTAATTGTTTCAAAGCACATGCCTGCTGCTGC...TCCCCCTGCAGACATGCCTGTGTACAAAAGCTTGCTCAATCGCTCGCTCACTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR GCA 90 bp TCCCCTTCCCAGCATTCAAGCAGTCTTTGTTTAGAATATTCCCAGGGGCTGGTTGTGATCTTCCTGTCCTaGCTCCCACTAGCTGGGATA +
Preference number: 2 (lower is better)
Translates to: SPSQHSSSLCLEYSQGLVVIFLS*LPLAGI
Trigger: TATCCCAGCTAGTGGGAGGCAGGACAGGAAGATCAC...AACCAGCCCCTGGGAATATTCTAAACAAAGACTGCTTGAATGCTGGGAAGGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR TCA 90 bp GCCTTCTCAGAAACTACGAGAAGGCAGGGGCCTAAGAGAGGCATCCTGACAGTTCACTCACTCCTTGTTTaGAGCAAGAACTCACATAGT +
Preference number: 2 (lower is better)
Translates to: AFSETTRRQGPKRGILTVHSLLV*SKNSHS
Trigger: ACTATGTGAGTTCTTGCTTCAAACAAGGAGTGAGTG...AACTGTCAGGATGCCTCTCTTAGGCCCCTGCCTTCTCGTAGTTTCTGAGAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR TCA 90 bp GCCTTCTCAGAAACTACGAGAAGGCAGGGGCCTAAGAGAGGCATCCTGACAGTTAATTCAGAGCCCAAATaGTTGTCAAGCCATTTCTCC +
Preference number: 2 (lower is better)
Translates to: AFSETTRRQGPKRGILTVNSEPK*LSSHFS
Trigger: GGAGAAATGGCTTGACAATCATTTGGGCTCTGAATT...AACTGTCAGGATGCCTCTCTTAGGCCCCTGCCTTCTCGTAGTTTCTGAGAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR TCA 90 bp CCAGTGAGCGAGCGATTGAGCAAGCTTTTGTACACAGGCATGTCTGCAGGGGGAATTGGTTATGACCCTTaGAGACACTTGAACATGACA +
Preference number: 2 (lower is better)
Translates to: PVSERLSKLLYTGMSAGGIGYDP*RHLNMT
Trigger: TGTCATGTTCAAGTGTCTTCAAGGGTCATAACCAAT...TCCCCCTGCAGACATGCCTGTGTACAAAAGCTTGCTCAATCGCTCGCTCACTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR TCA 90 bp GCCTTCTCAGAAACTACGAGAAGGCAGGGGCCTAAGAGAGGCATCCTGACAGTTGTTTTATATCTTGTTTaGCAGTGCTGGGGATTGGCA +
Preference number: 2 (lower is better)
Translates to: AFSETTRRQGPKRGILTVVLYLV*QCWGLA
Trigger: TGCCAATCCCCAGCACTGTCAAACAAGATATAAAAC...AACTGTCAGGATGCCTCTCTTAGGCCCCTGCCTTCTCGTAGTTTCTGAGAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR GCA 90 bp CCAGTGAGCGAGCGATTGAGCAAGCTTTTGTACACAGGCATGTCTGCAGGGGGAGAGTTCATAGAATTTTaGTTTGTCTTGTGGACCTCC +
Preference number: 2 (lower is better)
Translates to: PVSERLSKLLYTGMSAGGEFIEF*FVLWTS
Trigger: GGAGGTCCACAAGACAAAGCAAAATTCTATGAACTC...TCCCCCTGCAGACATGCCTGTGTACAAAAGCTTGCTCAATCGCTCGCTCACTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp CTAGTTCATGTCCCCTGTACGGCAGCTTCATTTAGCAGGGCCTGTTATTCAAGGGCTGTCCTTAAACTCTaGGCTCAAGTGATCTTCCTG +
Preference number: 2 (lower is better)
Translates to: LVHVPCTAASFSRACYSRAVLKL*AQVIFL
Trigger: CAGGAAGATCACTTGAGCCCAGAGTTTAAGGACAGC...CCTTGAATAACAGGCCCTGCTAAATGAAGCTGCCGTACAGGGGACATGAACTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp TTCAGAGCCCAAATGATTGTCAAGCCATTTCTCCAACCACAGATAACTTCTGTCTCCCAGGGGCTGGTTTaGAGAACGAGCCAGAGGACT +
Preference number: 2 (lower is better)
Translates to: FRAQMIVKPFLQPQITSVSQGLV*RTSQRT
Trigger: AGTCCTCTGGCTCGTTCTCCAAACCAGCCCCTGGGA...GACAGAAGTTATCTGTGGTTGGAGAAATGGCTTGACAATCATTTGGGCTCTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR TCA 90 bp ATTGTCAAGCCATTTCTCCAACCACAGATAACTTCTGTCTGCTTGTGGGTTGTTCCACCTCTGGAGAGTTaGGATCACAGGCATGCACTC +
Preference number: 2 (lower is better)
Translates to: IVKPFLQPQITSVCLWVVPPLES*DHRHAL
Trigger: GAGTGCATGCCTGTGATCTCAACTCTCCAGAGGTGG...AACAACCCACAAGCAGACAGAAGTTATCTGTGGTTGGAGAAATGGCTTGACAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp AATGCTGACGGACAGGTTAAGAATTGCCTGTACTTTGGCAAAGCAGAACTGAAGCCACGCTGCTGCTTTTaGTATGAGCATAAGGGACCA +
Preference number: 2 (lower is better)
Translates to: NADGQVKNCLYFGKAELKPRCCF*YEHKGP
Trigger: TGGTCCCTTATGCTCATACCAAAAGCAGCAGCGTGG...CTTCAGTTCTGCTTTGCCAAAGTACAGGCAATTCTTAACCTGTCCGTCAGCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp AAATGTGCAATAAACACTTGGCACGTTAGTACAGTGGGTATGTATTGGCAAACAACAGTGCCTGGCACATaGTCGGCAAACGCTACCACC +
Preference number: 2 (lower is better)
Translates to: KCAINTWHVSTVGMYWQTTVPGT*SANATT
Trigger: GGTGGTAGCGTTTGCCGACCATGTGCCAGGCACTGT...TGTTTGCCAATACATACCCACTGTACTAACGTGCCAAGTGTTTATTGCACATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR TCA 90 bp CTAGTTCATGTCCCCTGTACGGCAGCTTCATTTAGCAGGGCCTGTTATTCAAGGAGGGTAAGTCCAGTCTaGGTTCATAGAATTTTGCTT +
Preference number: 2 (lower is better)
Translates to: LVHVPCTAASFSRACYSRRVSPV*VHRILL
Trigger: AAGCAAAATTCTATGAACTCAGACTGGACTTACCCT...CCTTGAATAACAGGCCCTGCTAAATGAAGCTGCCGTACAGGGGACATGAACTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR TCA 90 bp AAATGTGCAATAAACACTTGGCACGTTAGTACAGTGGGTATGTATTGGCAAACAAAGTGTGTCACCAACTaGGCTACATCCCCAGCCCTG +
Preference number: 2 (lower is better)
Translates to: KCAINTWHVSTVGMYWQTKCVTN*ATSPAL
Trigger: CAGGGCTGGGGATGTAGCTCAGTTGGTGACACACTT...TGTTTGCCAATACATACCCACTGTACTAACGTGCCAAGTGTTTATTGCACATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR GCA 90 bp TCCCCTTCCCAGCATTCAAGCAGTCTTTGTTTAGAATATTCCCAGGGGCTGGTTTTGAGATCACAGGCATaGACTCCAATATCCAGTGTT +
Preference number: 2 (lower is better)
Translates to: SPSQHSSSLCLEYSQGLVLRSQA*TPISSV
Trigger: AACACTGGATATTGGAGTGCATGCCTGTGATCTCAA...AACCAGCCCCTGGGAATATTCTAAACAAAGACTGCTTGAATGCTGGGAAGGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp AATGCTGACGGACAGGTTAAGAATTGCCTGTACTTTGGCAAAGCAGAACTGAAGGCTGTCCTTAAACTCTaGGCTCAAGTGATCTTCCTG +
Preference number: 2 (lower is better)
Translates to: NADGQVKNCLYFGKAELKAVLKL*AQVIFL
Trigger: CAGGAAGATCACTTGAGCCCAGAGTTTAAGGACAGC...CTTCAGTTCTGCTTTGCCAAAGTACAGGCAATTCTTAACCTGTCCGTCAGCATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp ATTGTCAAGCCATTTCTCCAACCACAGATAACTTCTGTCTGCTTGTGGGTTGTTCCACGCTGCTGCTTTTaGTATGAGCATAAGGGACCA +
Preference number: 2 (lower is better)
Translates to: IVKPFLQPQITSVCLWVVPRCCF*YEHKGP
Trigger: TGGTCCCTTATGCTCATACCAAAAGCAGCAGCGTGG...AACAACCCACAAGCAGACAGAAGTTATCTGTGGTTGGAGAAATGGCTTGACAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp AAATGTGCAATAAACACTTGGCACGTTAGTACAGTGGGTATGTATTGGCAAACAATTGGCAACAGTGCCTaGCACATGGTCGGCAAACGC +
Preference number: 2 (lower is better)
Translates to: KCAINTWHVSTVGMYWQTIGNSA*HMVGKR
Trigger: GCGTTTGCCGACCATGTGCCAGGCACTGTTGCCAAT...TGTTTGCCAATACATACCCACTGTACTAACGTGCCAAGTGTTTATTGCACATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp ATTGTCAAGCCATTTCTCCAACCACAGATAACTTCTGTCTGCTTGTGGGTTGTTCCAGAGGGTCTTATCTaGATATGCCTCAGGGGAAAA +
Preference number: 2 (lower is better)
Translates to: IVKPFLQPQITSVCLWVVPEGLI*ICLRGK
Trigger: TTTTCCCCTGAGGCATATCCAGATAAGACCCTCTGG...AACAACCCACAAGCAGACAGAAGTTATCTGTGGTTGGAGAAATGGCTTGACAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp TTCAGAGCCCAAATGATTGTCAAGCCATTTCTCCAACCACAGATAACTTCTGTCAGGGAAATGTCTATTTaGGGATTAACGCCCTCAGGG +
Preference number: 2 (lower is better)
Translates to: FRAQMIVKPFLQPQITSVREMSI*GLTPSG
Trigger: CCCTGAGGGCGTTAATCCCCAAATAGACATTTCCCT...GACAGAAGTTATCTGTGGTTGGAGAAATGGCTTGACAATCATTTGGGCTCTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR TCA 90 bp AAGCCATTTCTCCAACCACAGATAACTTCTGTCTGCTTGTGGGTTGTTGGGGTTAGGGTAAGTCCAGTCTaGGTTCATAGAATTTTGCTT +
Preference number: 2 (lower is better)
Translates to: KPFLQPQITSVCLWVVGVRVSPV*VHRILL
Trigger: AAGCAAAATTCTATGAACTCAGACTGGACTTACCCT...AACCCCAACAACCCACAAGCAGACAGAAGTTATCTGTGGTTGGAGAAATGGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR TCA 90 bp AATGCTGACGGACAGGTTAAGAATTGCCTGTACTTTGGCAAAGCAGAACTGAAGTGCATTAAGCCACTGTaGCAAAATTCAGAGCCCAAA +
Preference number: 2 (lower is better)
Translates to: NADGQVKNCLYFGKAELKCIKPL*QNSEPK
Trigger: TTTGGGCTCTGAATTTTGTCACAGTGGCTTAATGCA...CTTCAGTTCTGCTTTGCCAAAGTACAGGCAATTCTTAACCTGTCCGTCAGCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR TCA 90 bp AAATGTGCAATAAACACTTGGCACGTTAGTACAGTGGGTATGTATTGGCAAACACAGCTTTCAAGTCTTTaGAAACAAGGGCCCCACGGT +
Preference number: 2 (lower is better)
Translates to: KCAINTWHVSTVGMYWQTQLSSL*KQGPHG
Trigger: ACCGTGGGGCCCTTGTTTTCAAAGACTTGAAAGCTG...TGTTTGCCAATACATACCCACTGTACTAACGTGCCAAGTGTTTATTGCACATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp AATGCTGACGGACAGGTTAAGAATTGCCTGTACTTTGGCAAAGCAGAACTGAAGAGTCGGCTCATGCAATaGTTTTACAAGGAGGGATAT +
Preference number: 2 (lower is better)
Translates to: NADGQVKNCLYFGKAELKSRLMQ*FYKEGY
Trigger: ATATCCCTCCTTGTAAAACCATTGCATGAGCCGACT...CTTCAGTTCTGCTTTGCCAAAGTACAGGCAATTCTTAACCTGTCCGTCAGCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp AAATGTGCAATAAACACTTGGCACGTTAGTACAGTGGGTATGTATTGGCAAACAAGAGATCATCTGAAATaGAGCCCCGGGGAATTGGGA +
Preference number: 2 (lower is better)
Translates to: KCAINTWHVSTVGMYWQTRDHLK*SPGELG
Trigger: TCCCAATTCCCCGGGGCTCCATTTCAGATGATCTCT...TGTTTGCCAATACATACCCACTGTACTAACGTGCCAAGTGTTTATTGCACATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR GCA 90 bp TTCAGAGCCCAAATGATTGTCAAGCCATTTCTCCAACCACAGATAACTTCTGTCTTGAGATCACAGGCATaGACTCCAATATCCAGTGTT +
Preference number: 2 (lower is better)
Translates to: FRAQMIVKPFLQPQITSVLRSQA*TPISSV
Trigger: AACACTGGATATTGGAGTGCATGCCTGTGATCTCAA...GACAGAAGTTATCTGTGGTTGGAGAAATGGCTTGACAATCATTTGGGCTCTGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR GCA 90 bp AAATGTGCAATAAACACTTGGCACGTTAGTACAGTGGGTATGTATTGGCAAACAACTTTCAATTCAGCATaGCCTGAACTTAGGCCACAG +
Preference number: 2 (lower is better)
Translates to: KCAINTWHVSTVGMYWQTTFNSA*PELRPQ
Trigger: CTGTGGCCTAAGTTCAGGGCATGCTGAATTGAAAGT...TGTTTGCCAATACATACCCACTGTACTAACGTGCCAAGTGTTTATTGCACATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp AAATGTGCAATAAACACTTGGCACGTTAGTACAGTGGGTATGTATTGGCAAACAACATCAAACAGGAGCTaGGAAGATAAACCCACACAG +
Preference number: 2 (lower is better)
Translates to: KCAINTWHVSTVGMYWQTTSNRS*EDKPTQ
Trigger: CTGTGTGGGTTTATCTTCCCAGCTCCTGTTTGATGT...TGTTTGCCAATACATACCCACTGTACTAACGTGCCAAGTGTTTATTGCACATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR TCA 90 bp TTCAGAGCCCAAATGATTGTCAAGCCATTTCTCCAACCACAGATAACTTCTGTCTTTGGTTTGGGTGTTTaGTTTCTAAGAAAAGGACTG +
Preference number: 2 (lower is better)
Translates to: FRAQMIVKPFLQPQITSVFGLGV*FLRKGL
Trigger: CAGTCCTTTTCTTAGAAATCAAACACCCAAACCAAA...GACAGAAGTTATCTGTGGTTGGAGAAATGGCTTGACAATCATTTGGGCTCTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CCA 90 bp AAATGTGCAATAAACACTTGGCACGTTAGTACAGTGGGTATGTATTGGCAAACACAGTCAAACCTTTCCTaGACATCAGGAAATAAATTC +
Preference number: 2 (lower is better)
Translates to: KCAINTWHVSTVGMYWQTQSNLS*TSGNKF
Trigger: GAATTTATTTCCTGATGTCCAGGAAAGGTTTGACTG...TGTTTGCCAATACATACCCACTGTACTAACGTGCCAAGTGTTTATTGCACATTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR TCA 72 bp GAGCTGGCAGCCAGGTCGCAGGGCAGAGCTGTCTTGTaGCTCCCTCTCCACCAGCCAGGCCGCAGCAGCAGC +
Preference number: 3 (lower is better)
Translates to: ELAARSQGRAVL*LPLHQPGRSSS
Trigger: GCTGCTGCTGCGGCCTGGCTGGTGGAGAGGGAGTCACAAGACAGCTCTGCCCTGCGACCTGGCTGCCAGCTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 72 bp CCCCAGCCCCCGCTGACTTCTGAGCACACGACGACGTaGAGGCCAGCTTCTCCTCATCAGTCGCGTGGCCGT +
Preference number: 3 (lower is better)
Translates to: PQPPLTSEHTTT*RPASPHQSRGR
Trigger: ACGGCCACGCGACTGATGAGGAGAAGCTGGCCTCCACGTCGTCGTGTGCTCAGAAGTCAGCGGGGGCTGGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000210767.2
ENSMUST00000211622.2
3UTR CCA 72 bp GCACAAGCCAGACCCAGCAGCAGCTCTAACGGGAGCTaGCAGCCAGGTCGCAGGGCAGAGCTGTCTTGTGAC +
Preference number: 3 (lower is better)
Translates to: AQARPSSSSNGS*QPGRRAELSCD
Trigger: GTCACAAGACAGCTCTGCCCTGCGACCTGGCTGCCAGCTCCCGTTAGAGCTGCTGCTGGGTCTGGCTTGTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CAA 90 bp CGACGTGGAGGCCAGCTTCTCCTCATCAGTCGCGTGGCCGTCCCTGTTGGGAATCTTTGCAGCCGCTCCTaGGGGTTTGGCCTCGGGTTC +
Preference number: 3 (lower is better)
Translates to: RRGGQLLLISRVAVPVGNLCSRS*GFGLGF
Trigger: GAACCCGAGGCCAAACCCCAAGGAGCGGCTGCAAAG...ATTCCCAACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGGCCTCCACGTCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210767.2
3UTR TCA 72 bp TTCAGGCCAGACCTCAGCCCCACACTTGGCGGCCTCTaGGTGGTGAAAACATCACACAGCCTACCTGAGGCC +
Preference number: 3 (lower is better)
Translates to: FRPDLSPTLGGL*VVKTSHSLPEA
Trigger: GGCCTCAGGTAGGCTGTGTGATGTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTGGCCTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR GCA 72 bp AGGCCCGTCTGCCAGTGTGCAGGGAGGGACAGCCACTaGTCCTCTCCTATGCCTAACATACAGCACAGCACA +
Preference number: 3 (lower is better)
Translates to: RPVCQCAGRDSH*SSPMPNIQHST
Trigger: TGTGCTGTGCTGTATGTTAGGCATAGGAGAGGAGCAGTGGCTGTCCCTCCCTGCACACTGGCAGACGGGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR GCA 72 bp GCCATCTTTGCTGAAAGGGAAGTCTTTGGCCTGCCATaGTCAGCCCAGGGCTGCCCAGTGAGCGAGCGATTG +
Preference number: 3 (lower is better)
Translates to: AIFAEREVFGLP*SAQGCPVSERL
Trigger: CAATCGCTCGCTCACTGGGCAGCCCTGGGCTGAGCATGGCAGGCCAAAGACTTCCCTTTCAGCAAAGATGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 72 bp AGCAGCAGCGGCAGCGCAGCGGCGAAGCGGGGACGATaGCAGCAGCAGGCATGTGCTTTGAAACAATTACTT +
Preference number: 3 (lower is better)
Translates to: SSSGSAAAKRGR*QQQACALKQLL
Trigger: AAGTAATTGTTTCAAAGCACATGCCTGCTGCTGCCATCGTCCCCGCTTCGCCGCTGCGCTGCCGCTGCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 72 bp GACGACGTGGAGGCCAGCTTCTCCTCATCAGTCGCGTaGCCGTCCCTGTTGGGAATCTCTGAGATCTTCGAG +
Preference number: 3 (lower is better)
Translates to: DDVEASFSSSVA*PSLLGISEIFE
Trigger: CTCGAAGATCTCAGAGATTCCCAACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGGCCTCCACGTCGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000210767.2
ENSMUST00000211622.2
3UTR-3UTR CAA 90 bp AGGCCAGCTTCTCCTCATCAGTCGCGTGGCCGTCCCTGTTGGGAATCTCTGAGAGCGTGGCCGTCCCTGTaGGGAATCTCTGAGATCTTC +
Preference number: 3 (lower is better)
Translates to: RPASPHQSRGRPCWESLRAWPSL*GISEIF
Trigger: GAAGATCTCAGAGATTCCCAACAGGGACGGCCACGC...TCTCAGAGATTCCCAACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000210767.2
ENSMUST00000211622.2
3UTR-3UTR CAA 90 bp CTTCCCTCTGACATCCTTGACTGGGTGAGAATCGACGGTCGCCTGTGGCGCTTCCGAGATTCTTGGGGTTaGGCCTCGGGTTCTGCCAAT +
Preference number: 3 (lower is better)
Translates to: LPSDILDWVRIDGRLWRFRDSWG*ASGSAN
Trigger: ATTGGCAGAACCCGAGGCCAAACCCCAAGAATCTCG...GAAGCGCCACAGGCGACCGTCGATTCTCACCCAGTCAAGGATGTCAGAGGGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209827.2
3UTR TCA 72 bp CCGCAGAGTGCCCTTTCTAGCCTGCGCCATCTTTGCTaGAAGGGAAGTCTTTGGCCTGCCATGCTCAGCCCA +
Preference number: 3 (lower is better)
Translates to: PQSALSSLRHLC*KGSLWPAMLSP
Trigger: TGGGCTGAGCATGGCAGGCCAAAGACTTCCCTTTCAGCAAAGATGGCGCAGGCTAGAAAGGGCACTCTGCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR TCA 72 bp CAGACCTCAGCCCCACACTTGGCGGCCTCTGAGTGGTaGAAACATCACACAGCCTACCTGAGGCCAACATGG +
Preference number: 3 (lower is better)
Translates to: QTSAPHLAASEW*KHHTAYLRPTW
Trigger: CCATGTTGGCCTCAGGTAGGCTGTGTGATGTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR GCA 72 bp AGGGAAGTCTTTGGCCTGCCATGCTCAGCCCAGGGCTaGCCAGTGAGCGAGCGATTGAGCAAGCTTTTGTAC +
Preference number: 3 (lower is better)
Translates to: REVFGLPCSAQG*PVSERLSKLLY
Trigger: GTACAAAAGCTTGCTCAATCGCTCGCTCACTGGGCAGCCCTGGGCTGAGCATGGCAGGCCAAAGACTTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR TCA 72 bp AGGGCCACAGTCCTACAGAGACACAGCAGGAACAGCTaGGCAGAGAGATCATCTGAAATGGAGCCCCGGGGA +
Preference number: 3 (lower is better)
Translates to: RATVLQRHSRNS*AERSSEMEPRG
Trigger: TCCCCGGGGCTCCATTTCAGATGATCTCTCTGCTCAGCTGTTCCTGCTGTGTCTCTGTAGGACTGTGGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 72 bp CCAGCTTCTCCTCATCAGTCGCGTGGCCGTCCCTGTTaGGAATCTCTGAGATCTTCGAGATCACGGCTCCTT +
Preference number: 3 (lower is better)
Translates to: PASPHQSRGRPC*ESLRSSRSRLL
Trigger: AAGGAGCCGTGATCTCGAAGATCTCAGAGATTCCCAACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000210767.2
ENSMUST00000211622.2
3UTR GCA 72 bp CGAGCGATTGAGCAAGCTTTTGTACACAGGCATGTCTaGAGGGGGAACAGGGCCACTGGCTGGAAAGGAAGT +
Preference number: 3 (lower is better)
Translates to: RAIEQAFVHRHV*RGNRATGWKGS
Trigger: ACTTCCTTTCCAGCCAGTGGCCCTGTTCCCCCTGCAGACATGCCTGTGTACAAAAGCTTGCTCAATCGCTCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR GCA 72 bp CCAAATCGAGAGGCTGAGCTTCGTATTTCTTCACTTTaGAGCCGCTCCTTGGGGTTTGGCCTCGGGTTCTGC +
Preference number: 3 (lower is better)
Translates to: PNREAELRISSL*SRSLGFGLGFC
Trigger: GCAGAACCCGAGGCCAAACCCCAAGGAGCGGCTGCAAAGTGAAGAAATACGAAGCTCAGCCTCTCGATTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210767.2
3UTR CCA 72 bp TCTTGTTTGACAGTGCTGGGGATTGGCAACAGTGCCTaGCACATGGTCGGCAAACGCTACCACCAGACACAG +
Preference number: 3 (lower is better)
Translates to: SCLTVLGIGNSA*HMVGKRYHQTQ
Trigger: CTGTGTCTGGTGGTAGCGTTTGCCGACCATGTGCCAGGCACTGTTGCCAATCCCCAGCACTGTCAAACAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 72 bp AACATCGTGTTCCGCCTTCCCTCTGACATCCTTGACTaGGTGAGAATCGACGGTCGCCTGTGGCGCTTCATT +
Preference number: 3 (lower is better)
Translates to: NIVFRLPSDILD*VRIDGRLWRFI
Trigger: AATGAAGCGCCACAGGCGACCGTCGATTCTCACCCAGTCAAGGATGTCAGAGGGAAGGCGGAACACGATGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209827.2
3UTR-3UTR CAA 90 bp CCAGTGAGCGAGCGATTGAGCAAGCTTTTGTACACAGGCATGTCTGCAGGGGGATCCACCTCTGGAGAGTaGAGATCACAGGCATGCACT +
Preference number: 3 (lower is better)
Translates to: PVSERLSKLLYTGMSAGGSTSGE*RSQACT
Trigger: AGTGCATGCCTGTGATCTCAACTCTCCAGAGGTGGA...TCCCCCTGCAGACATGCCTGTGTACAAAAGCTTGCTCAATCGCTCGCTCACTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CAA 90 bp AAGGTTCAGGCCAGACCTCAGCCCCACACTTGGCGGCCTCTGAGTGGTGAAAACGCTTCCACTCACTCCTaGTTTGAAGCAAGAACTCAC +
Preference number: 3 (lower is better)
Translates to: KVQARPQPHTWRPLSGENASTHS*FEARTH
Trigger: GTGAGTTCTTGCTTCAAACAAGGAGTGAGTGGAAGC...GTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTGGCCTGAACCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR GCA 72 bp CCTGCCTCCACCTCTGGAGAGTTGAGATCACAGGCATaGACTCCAATATCCAGTGTTTGTAGTTCTGGGGGC +
Preference number: 3 (lower is better)
Translates to: PASTSGELRSQA*TPISSVCSSGG
Trigger: GCCCCCAGAACTACAAACACTGGATATTGGAGTGCATGCCTGTGATCTCAACTCTCCAGAGGTGGAGGCAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR GCA 72 bp AAAGAGACTGTGAGCCGCAGAGTGCCCTTTCTAGCCTaGGCCATCTTTGCTGAAAGGGAAGTCTTTGGCCTG +
Preference number: 3 (lower is better)
Translates to: KETVSRRVPFLA*AIFAEREVFGL
Trigger: CAGGCCAAAGACTTCCCTTTCAGCAAAGATGGCGCAGGCTAGAAAGGGCACTCTGCGGCTCACAGTCTCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 72 bp CGGCAAATCTTCCTTAGCCATGAAAGCTATGACCCCTaGCCCTCGTATCCTCAGCCTTTCCACCCTGACTCA +
Preference number: 3 (lower is better)
Translates to: RQIFLSHESYDP*PSYPQPFHPDS
Trigger: TGAGTCAGGGTGGAAAGGCTGAGGATACGAGGGCCAGGGGTCATAGCTTTCATGGCTAAGGAAGATTTGCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 72 bp AGCAGTCTTTGTTTAGAATATTCCCAGGGGCTGGTTTaGAGAACGAGCCAGAGGACTCTTTACGGCCGGCCC +
Preference number: 3 (lower is better)
Translates to: SSLCLEYSQGLV*RTSQRTLYGRP
Trigger: GGGCCGGCCGTAAAGAGTCCTCTGGCTCGTTCTCCAAACCAGCCCCTGGGAATATTCTAAACAAAGACTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 72 bp TCGTATTTCTTCACTTTGCAGCCGCTCCTTGGGGTTTaGCCTCGGGTTCTGCCAATCCCGGTGATGAATCAC +
Preference number: 3 (lower is better)
Translates to: SYFFTLQPLLGV*PRVLPIPVMNH
Trigger: GTGATTCATCACCGGGATTGGCAGAACCCGAGGCCAAACCCCAAGGAGCGGCTGCAAAGTGAAGAAATACGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210767.2
3UTR TCA 72 bp CGGCCTCTGAGTGGTGAAAACATCACACAGCCTACCTaGGGCCAACATGGCAGCAGCATCTCCAAACTAGAA +
Preference number: 3 (lower is better)
Translates to: RPLSGENITQPT*GQHGSSISKLE
Trigger: TTCTAGTTTGGAGATGCTGCTGCCATGTTGGCCTCAGGTAGGCTGTGTGATGTTTTCACCACTCAGAGGCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 72 bp CACAGGCATGTCTGCAGGGGGAACAGGGCCACTGGCTaGAAAGGAAGTTTAGCGTTAAGCTATAACCCTGAA +
Preference number: 3 (lower is better)
Translates to: HRHVCRGNRATG*KGSLALSYNPE
Trigger: TTCAGGGTTATAGCTTAACGCTAAACTTCCTTTCCAGCCAGTGGCCCTGTTCCCCCTGCAGACATGCCTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CAA 90 bp AAGGTTCAGGCCAGACCTCAGCCCCACACTTGGCGGCCTCTGAGTGGTGAAAACTCAGGACTTCCTAATTaGGTCTGTTTCTCAAGATGC +
Preference number: 3 (lower is better)
Translates to: KVQARPQPHTWRPLSGENSGLPN*VCFSRC
Trigger: GCATCTTGAGAAACAGACCAAATTAGGAAGTCCTGA...GTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTGGCCTGAACCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CAA 90 bp GCCTTCTCAGAAACTACGAGAAGGCAGGGGCCTAAGAGAGGCATCCTGACAGTTCGATTGAGCAAGCTTTaGTACACAGGCATGTCTGCA +
Preference number: 3 (lower is better)
Translates to: AFSETTRRQGPKRGILTVRLSKL*YTGMSA
Trigger: TGCAGACATGCCTGTGTACAAAAGCTTGCTCAATCG...AACTGTCAGGATGCCTCTCTTAGGCCCCTGCCTTCTCGTAGTTTCTGAGAAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR TCA 72 bp AACTTGGGAAAAGCAAAGACGACGACGACAGCTAGATaGACTCAGGCTGTAGAAGCACAAGCCAGACCCAGC +
Preference number: 3 (lower is better)
Translates to: NLGKAKTTTTAR*TQAVEAQARPS
Trigger: GCTGGGTCTGGCTTGTGCTTCTACAGCCTGAGTTCATCTAGCTGTCGTCGTCGTCTTTGCTTTTCCCAAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR GCA 72 bp AGTGTGCAGGGAGGGACAGCCACTGCTCCTCTCCTATaGCTAACATACAGCACAGCACAGGACACTTTAAAA +
Preference number: 3 (lower is better)
Translates to: SVQGGTATAPLL*LTYSTAQDTLK
Trigger: TTTTAAAGTGTCCTGTGCTGTGCTGTATGTTAGGCATAGGAGAGGAGCAGTGGCTGTCCCTCCCTGCACACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 72 bp GTGACCTTGGACTTATGGTCATCCTGCCTCCACCTCTaGAGAGTTGAGATCACAGGCATGCACTCCAATATC +
Preference number: 3 (lower is better)
Translates to: VTLDLWSSCLHL*RVEITGMHSNI
Trigger: GATATTGGAGTGCATGCCTGTGATCTCAACTCTCCAGAGGTGGAGGCAGGATGACCATAAGTCCAAGGTCAC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 72 bp AAGGCTGCGGGTGTGACCGTCACACTGCCCTGTATCTaGTCTGGATGTGGTTTCAGAGTTCAGATTTCTATG +
Preference number: 3 (lower is better)
Translates to: KAAGVTVTLPCI*SGCGFRVQISM
Trigger: CATAGAAATCTGAACTCTGAAACCACATCCAGACCAGATACAGGGCAGTGTGACGGTCACACCCGCAGCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CAA 90 bp AAGGTTCAGGCCAGACCTCAGCCCCACACTTGGCGGCCTCTGAGTGGTGAAAACGTTTGGTTTGGGTGTTaGATTTCTAAGAAAAGGACT +
Preference number: 3 (lower is better)
Translates to: KVQARPQPHTWRPLSGENVWFGC*ISKKRT
Trigger: AGTCCTTTTCTTAGAAATCAAACACCCAAACCAAAC...GTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTGGCCTGAACCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CAA 90 bp CCAGTGAGCGAGCGATTGAGCAAGCTTTTGTACACAGGCATGTCTGCAGGGGGAATAACTTCTGTCTGCTaGTGGGTTGTTGGGGTTTTT +
Preference number: 3 (lower is better)
Translates to: PVSERLSKLLYTGMSAGGITSVC*WVVGVF
Trigger: AAAAACCCCAACAACCCACAAGCAGACAGAAGTTAT...TCCCCCTGCAGACATGCCTGTGTACAAAAGCTTGCTCAATCGCTCGCTCACTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CAA 90 bp CCAGTGAGCGAGCGATTGAGCAAGCTTTTGTACACAGGCATGTCTGCAGGGGGATGTTTTATATCTTGTTaGACAGTGCTGGGGATTGGC +
Preference number: 3 (lower is better)
Translates to: PVSERLSKLLYTGMSAGGCFISC*TVLGIG
Trigger: GCCAATCCCCAGCACTGTCAAACAAGATATAAAACA...TCCCCCTGCAGACATGCCTGTGTACAAAAGCTTGCTCAATCGCTCGCTCACTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR GCA 72 bp CTAGCAGAAGGCCTATGGAGAGGCACTGGCTCTATATaGAGTTCCCTTTTCTCTCCACACAGGAAGGACTTA +
Preference number: 3 (lower is better)
Translates to: LAEGLWRGTGSI*SSLFSPHRKDL
Trigger: TAAGTCCTTCCTGTGTGGAGAGAAAAGGGAACTGCATATAGAGCCAGTGCCTCTCCATAGGCCTTCTGCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 72 bp CCTGTGTTTTATATCTTGTTTGACAGTGCTGGGGATTaGCAACAGTGCCTGGCACATGGTCGGCAAACGCTA +
Preference number: 3 (lower is better)
Translates to: PVFYILFDSAGD*QQCLAHGRQTL
Trigger: TAGCGTTTGCCGACCATGTGCCAGGCACTGTTGCCAATCCCCAGCACTGTCAAACAAGATATAAAACACAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 72 bp CAGTTACTATTAACTGAGGGTGGGAAGCATTTTTGCTaGGCCTTCTCAGAAACTACGAGAAGGCAGGGGCCT +
Preference number: 3 (lower is better)
Translates to: QLLLTEGGKHFC*AFSETTRRQGP
Trigger: AGGCCCCTGCCTTCTCGTAGTTTCTGAGAAGGCCCAGCAAAAATGCTTCCCACCCTCAGTTAATAGTAACTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR TCA 72 bp AGGGACGTGTGCATGCTGAGCAAGTGTGTCACCAACTaGGCTACATCCCCAGCCCTGTTAAATTGCTTAAAA +
Preference number: 3 (lower is better)
Translates to: RDVCMLSKCVTN*ATSPALLNCLK
Trigger: TTTTAAGCAATTTAACAGGGCTGGGGATGTAGCTCAGTTGGTGACACACTTGCTCAGCATGCACACGTCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR GCA 72 bp CTCCATGAGGCACAATTCATTGCTGAAGTCGGCTCATaGAATGGTTTTACAAGGAGGGATATGCCTGTGTGC +
Preference number: 3 (lower is better)
Translates to: LHEAQFIAEVGS*NGFTRRDMPVC
Trigger: GCACACAGGCATATCCCTCCTTGTAAAACCATTGCATGAGCCGACTTCAGCAATGAATTGTGCCTCATGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 72 bp TTACTCTGTTCTAGCAGAAGGCCTATGGAGAGGCACTaGCTCTATATGCAGTTCCCTTTTCTCTCCACACAG +
Preference number: 3 (lower is better)
Translates to: LLCSSRRPMERH*LYMQFPFLSTQ
Trigger: CTGTGTGGAGAGAAAAGGGAACTGCATATAGAGCCAGTGCCTCTCCATAGGCCTTCTGCTAGAACAGAGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CAA 90 bp CTAGTTCATGTCCCCTGTACGGCAGCTTCATTTAGCAGGGCCTGTTATTCAAGGCAGCAGGCATGTGCTTaGAAACAATTACTTCTCTCT +
Preference number: 3 (lower is better)
Translates to: LVHVPCTAASFSRACYSRQQACA*KQLLLS
Trigger: AGAGAGAAGTAATTGTTTCAAAGCACATGCCTGCTG...CCTTGAATAACAGGCCCTGCTAAATGAAGCTGCCGTACAGGGGACATGAACTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CAA 90 bp CTAGTTCATGTCCCCTGTACGGCAGCTTCATTTAGCAGGGCCTGTTATTCAAGGAGAAATGTCACAAACTaGGGAAAAGCAAAGACGACG +
Preference number: 3 (lower is better)
Translates to: LVHVPCTAASFSRACYSRRNVTN*GKAKTT
Trigger: CGTCGTCTTTGCTTTTCCCAAGTTTGTGACATTTCT...CCTTGAATAACAGGCCCTGCTAAATGAAGCTGCCGTACAGGGGACATGAACTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CAA 90 bp CTAGTTCATGTCCCCTGTACGGCAGCTTCATTTAGCAGGGCCTGTTATTCAAGGATAACTTCTGTCTGCTaGTGGGTTGTTGGGGTTTTT +
Preference number: 3 (lower is better)
Translates to: LVHVPCTAASFSRACYSRITSVC*WVVGVF
Trigger: AAAAACCCCAACAACCCACAAGCAGACAGAAGTTAT...CCTTGAATAACAGGCCCTGCTAAATGAAGCTGCCGTACAGGGGACATGAACTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR GCA 72 bp GGGTCAGTCTGTAATGCTGACGGACAGGTTAAGAATTaGCTGTACTTTGGCAAAGCAGAACTGAAGAAACGG +
Preference number: 3 (lower is better)
Translates to: GSVCNADGQVKN*LYFGKAELKKR
Trigger: CCGTTTCTTCAGTTCTGCTTTGCCAAAGTACAGGCAATTCTTAACCTGTCCGTCAGCATTACAGACTGACCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR GCA 72 bp AATCAGTTACTATTAACTGAGGGTGGGAAGCATTTTTaGTGGGCCTTCTCAGAAACTACGAGAAGGCAGGGG +
Preference number: 3 (lower is better)
Translates to: NQLLLTEGGKHF*WAFSETTRRQG
Trigger: CCCCTGCCTTCTCGTAGTTTCTGAGAAGGCCCAGCAAAAATGCTTCCCACCCTCAGTTAATAGTAACTGATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CAA 90 bp TCCCCTTCCCAGCATTCAAGCAGTCTTTGTTTAGAATATTCCCAGGGGCTGGTTCAGCAGGCATGTGCTTaGAAACAATTACTTCTCTCT +
Preference number: 3 (lower is better)
Translates to: SPSQHSSSLCLEYSQGLVQQACA*KQLLLS
Trigger: AGAGAGAAGTAATTGTTTCAAAGCACATGCCTGCTG...AACCAGCCCCTGGGAATATTCTAAACAAAGACTGCTTGAATGCTGGGAAGGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CAA 90 bp AATGCTGACGGACAGGTTAAGAATTGCCTGTACTTTGGCAAAGCAGAACTGAAGATGAGGCACAATTCATaGCTGAAGTCGGCTCATGCA +
Preference number: 3 (lower is better)
Translates to: NADGQVKNCLYFGKAELKMRHNS*LKSAHA
Trigger: TGCATGAGCCGACTTCAGCAATGAATTGTGCCTCAT...CTTCAGTTCTGCTTTGCCAAAGTACAGGCAATTCTTAACCTGTCCGTCAGCATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR TCA 72 bp AAGATGCCTGAATCCACATTAGAGCTTCAGAGAATATaGAGTGTAGGGGAATTCCCGGTCTCCAAACAGAGC +
Preference number: 3 (lower is better)
Translates to: KMPESTLELQRI*SVGEFPVSKQS
Trigger: GCTCTGTTTGGAGACCGGGAATTCCCCTACACTTCATATTCTCTGAAGCTCTAATGTGGATTCAGGCATCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CAA 90 bp ATTGTCAAGCCATTTCTCCAACCACAGATAACTTCTGTCTGCTTGTGGGTTGTTGCTTCCACTCACTCCTaGTTTGAAGCAAGAACTCAC +
Preference number: 3 (lower is better)
Translates to: IVKPFLQPQITSVCLWVVASTHS*FEARTH
Trigger: GTGAGTTCTTGCTTCAAACAAGGAGTGAGTGGAAGC...AACAACCCACAAGCAGACAGAAGTTATCTGTGGTTGGAGAAATGGCTTGACAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR TCA 72 bp TATTTGGGGATTAACGCCCTCAGGGTAAGTCCAGTCTaGGTTCATAGAATTTTGCTTTGTCTTGTGGACCTC +
Preference number: 3 (lower is better)
Translates to: YLGINALRVSPV*VHRILLCLVDL
Trigger: GAGGTCCACAAGACAAAGCAAAATTCTATGAACTCAGACTGGACTTACCCTGAGGGCGTTAATCCCCAAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CCA 72 bp TTGGGACACAGTGGGAGCAAATGTGCAATAAACACTTaGCACGTTAGTACAGTGGGTATGTATTGGCAAACA +
Preference number: 3 (lower is better)
Translates to: LGHSGSKCAINT*HVSTVGMYWQT
Trigger: TGTTTGCCAATACATACCCACTGTACTAACGTGCCAAGTGTTTATTGCACATTTGCTCCCACTGTGTCCCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CAA 90 bp AATGCTGACGGACAGGTTAAGAATTGCCTGTACTTTGGCAAAGCAGAACTGAAGAGAAATGTCACAAACTaGGGAAAAGCAAAGACGACG +
Preference number: 3 (lower is better)
Translates to: NADGQVKNCLYFGKAELKRNVTN*GKAKTT
Trigger: CGTCGTCTTTGCTTTTCCCAAGTTTGTGACATTTCT...CTTCAGTTCTGCTTTGCCAAAGTACAGGCAATTCTTAACCTGTCCGTCAGCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CAA 90 bp TCCCCTTCCCAGCATTCAAGCAGTCTTTGTTTAGAATATTCCCAGGGGCTGGTTGTTTGGTTTGGGTGTTaGATTTCTAAGAAAAGGACT +
Preference number: 3 (lower is better)
Translates to: SPSQHSSSLCLEYSQGLVVWFGC*ISKKRT
Trigger: AGTCCTTTTCTTAGAAATCAAACACCCAAACCAAAC...AACCAGCCCCTGGGAATATTCTAAACAAAGACTGCTTGAATGCTGGGAAGGGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CAA 90 bp AAATGTGCAATAAACACTTGGCACGTTAGTACAGTGGGTATGTATTGGCAAACAACAGCTTTCAAGTCTTaGAAAACAAGGGCCCCACGG +
Preference number: 3 (lower is better)
Translates to: KCAINTWHVSTVGMYWQTTAFKS*KTRAPR
Trigger: CCGTGGGGCCCTTGTTTTCAAAGACTTGAAAGCTGT...TGTTTGCCAATACATACCCACTGTACTAACGTGCCAAGTGTTTATTGCACATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR-3UTR CAA 90 bp AATGCTGACGGACAGGTTAAGAATTGCCTGTACTTTGGCAAAGCAGAACTGAAGGCAAGAATTCCTGCGTaGCTTCTTAAAATGCAAAAT +
Preference number: 3 (lower is better)
Translates to: NADGQVKNCLYFGKAELKARIPA*LLKMQN
Trigger: ATTTTGCATTTTAAGAAGCAACGCAGGAATTCTTGC...CTTCAGTTCTGCTTTGCCAAAGTACAGGCAATTCTTAACCTGTCCGTCAGCATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR TCA 72 bp ATACTGAAAATAAGTCAATATAAAATGAGCGCACACTaGTGCCGCCGTAACACTAGCAAGAATTCCTGCGTT +
Preference number: 3 (lower is better)
Translates to: ILKISQYKMSAH*CRRNTSKNSCV
Trigger: AACGCAGGAATTCTTGCTAGTGTTACGGCGGCATCAGTGTGCGCTCATTTTATATTGACTTATTTTCAGTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR TCA 72 bp CAGGACTTCCTAATTTGGTCTGTTTCTCAAGATGCCTaGATCCACATTAGAGCTTCAGAGAATATGAAGTGT +
Preference number: 3 (lower is better)
Translates to: QDFLIWSVSQDA*IHIRASENMKC
Trigger: ACACTTCATATTCTCTGAAGCTCTAATGTGGATTCAGGCATCTTGAGAAACAGACCAAATTAGGAAGTCCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR GCA 90 bp CGACGACGTGGAGGCCAGCTTCTCCTCATCAGTCGCGTGGCCGTCCCTGTTGGGGACACAGCCATGGGCTaGTGCTGTCCCCAGAGCCGC +
Preference number: 4 (lower is better)
Translates to: RRRGGQLLLISRVAVPVGDTAMG*CCPQSR
Trigger: GCGGCTCTGGGGACAGCAGCAGCCCATGGCTGTGTC...CCCAACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGGCCTCCACGTCGTCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR GCA 90 bp CACACGACGACGTGGAGGCCAGCTTCTCCTCATCAGTCGCGTGGCCGTCCCTGTACAGCCATGGGCTGCTaGTGTCCCCAGAGCCGCAGG +
Preference number: 4 (lower is better)
Translates to: HTTTWRPASPHQSRGRPCTAMGC*CPQSRR
Trigger: CCTGCGGCTCTGGGGACAGCAGCAGCCCATGGCTGT...ACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGGCCTCCACGTCGTCGTGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR GCA 90 bp CGACGACGTGGAGGCCAGCTTCTCCTCATCAGTCGCGTGGCCGTCCCTGTTGGGCTTTGCACCACCTGCTaGGAGGACTGGCTGGCCCAC +
Preference number: 4 (lower is better)
Translates to: RRRGGQLLLISRVAVPVGLCTTC*EDWLAH
Trigger: GTGGGCCAGCCAGTCCTCGCAGCAGGTGGTGCAAAG...CCCAACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGGCCTCCACGTCGTCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210767.2
CDS-3UTR CCA 90 bp CGACGACGTGGAGGCCAGCTTCTCCTCATCAGTCGCGTGGCCGTCCCTGTTGGGACGGGGACACAGCCATaGGCTGCTGCTGTCCCCAGA +
Preference number: 4 (lower is better)
Translates to: RRRGGQLLLISRVAVPVGTGTQP*AAAVPR
Trigger: TCTGGGGACAGCAGCAGCCCATGGCTGTGTCCCCGT...CCCAACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGGCCTCCACGTCGTCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR CCA 90 bp AGCTGGCAGCCAGGTCGCAGGGCAGAGCTGTCTTGTGACTCCCTCTCCACCAGCGGAGAGGTGGGTCCCTaGACCCACCCTGCAGCTCGA +
Preference number: 4 (lower is better)
Translates to: SWQPGRRAELSCDSLSTSGEVGP*THPAAR
Trigger: TCGAGCTGCAGGGTGGGTCCAGGGACCCACCTCTCC...GCTGGTGGAGAGGGAGTCACAAGACAGCTCTGCCCTGCGACCTGGCTGCCAGCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR GCA 90 bp AGGCCAGCTTCTCCTCATCAGTCGCGTGGCCGTCCCTGTTGGGAATCTCTGAGATCCCTGGACCCACCCTaGAGCTCGACCCCCGAGTCA +
Preference number: 4 (lower is better)
Translates to: RPASPHQSRGRPCWESLRSLDPP*SSTPES
Trigger: TGACTCGGGGGTCGAGCTGCAGGGTGGGTCCAGGGA...TCTCAGAGATTCCCAACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR GCA 90 bp GCCAGCTTCTCCTCATCAGTCGCGTGGCCGTCCCTGTTGGGAATCTCTGAGATCGTCCACTTGGCCCACTaGACGGGCGACAGGATCTGC +
Preference number: 4 (lower is better)
Translates to: ASFSSSVAWPSLLGISEIVHLAH*TGDRIC
Trigger: GCAGATCCTGTCGCCCGTGCAGTGGGCCAAGTGGAC...GATCTCAGAGATTCCCAACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR CCA 90 bp GCACTCCCCAGTAGAGCTAGGTTCCCAGCCCCTACCGAGTCTGAAGCTGGCTTTACGGGGACACAGCCATaGGCTGCTGCTGTCCCCAGA +
Preference number: 4 (lower is better)
Translates to: ALPSRARFPAPTESEAGFTGTQP*AAAVPR
Trigger: TCTGGGGACAGCAGCAGCCCATGGCTGTGTCCCCGT...AAAGCCAGCTTCAGACTCGGTAGGGGCTGGGAACCTAGCTCTACTGGGGAGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR CCA 90 bp CACACGACGACGTGGAGGCCAGCTTCTCCTCATCAGTCGCGTGGCCGTCCCTGTGCCTCTGTCCATCACTaGCTCATCCTGAGTGGCTTC +
Preference number: 4 (lower is better)
Translates to: HTTTWRPASPHQSRGRPCASVHH*LILSGF
Trigger: GAAGCCACTCAGGATGAGCCAGTGATGGACAGAGGC...ACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGGCCTCCACGTCGTCGTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR CCA 90 bp AGCTGGCAGCCAGGTCGCAGGGCAGAGCTGTCTTGTGACTCCCTCTCCACCAGCCGTGGCCGTCCCTGTTaGGAATCTCTGAGATCTTCG +
Preference number: 4 (lower is better)
Translates to: SWQPGRRAELSCDSLSTSRGRPC*ESLRSS
Trigger: CGAAGATCTCAGAGATTCCCAACAGGGACGGCCACG...GCTGGTGGAGAGGGAGTCACAAGACAGCTCTGCCCTGCGACCTGGCTGCCAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR TCA 90 bp CCAGTGAGCGAGCGATTGAGCAAGCTTTTGTACACAGGCATGTCTGCAGGGGGAGACCCCAGCCCCCGCTaGCTTCTGAGCACACGACGA +
Preference number: 4 (lower is better)
Translates to: PVSERLSKLLYTGMSAGGDPSPR*LLSTRR
Trigger: TCGTCGTGTGCTCAGAAGTCAGCGGGGGCTGGGGTC...TCCCCCTGCAGACATGCCTGTGTACAAAAGCTTGCTCAATCGCTCGCTCACTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR GCA 90 bp CCAGTGAGCGAGCGATTGAGCAAGCTTTTGTACACAGGCATGTCTGCAGGGGGAACAGCCATGGGCTGCTaGTGTCCCCAGAGCCGCAGG +
Preference number: 4 (lower is better)
Translates to: PVSERLSKLLYTGMSAGGTAMGC*CPQSRR
Trigger: CCTGCGGCTCTGGGGACAGCAGCAGCCCATGGCTGT...TCCCCCTGCAGACATGCCTGTGTACAAAAGCTTGCTCAATCGCTCGCTCACTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR GCA 90 bp CCAGTGAGCGAGCGATTGAGCAAGCTTTTGTACACAGGCATGTCTGCAGGGGGATCCCTGGACCCACCCTaGAGCTCGACCCCCGAGTCA +
Preference number: 4 (lower is better)
Translates to: PVSERLSKLLYTGMSAGGSLDPP*SSTPES
Trigger: TGACTCGGGGGTCGAGCTGCAGGGTGGGTCCAGGGA...TCCCCCTGCAGACATGCCTGTGTACAAAAGCTTGCTCAATCGCTCGCTCACTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR CCA 90 bp TTCTCCTCATCAGTCGCGTGGCCGTCCCTGTTGGGAATCTCTGAGATCTTCGAGCGGACCACGTCCACTTaGCCCACTGCACGGGCGACA +
Preference number: 4 (lower is better)
Translates to: FSSSVAWPSLLGISEIFERTTST*PTARAT
Trigger: TGTCGCCCGTGCAGTGGGCCAAGTGGACGTGGTCCG...CTCGAAGATCTCAGAGATTCCCAACAGGGACGGCCACGCGACTGATGAGGAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR GCA 90 bp AAGGTTCAGGCCAGACCTCAGCCCCACACTTGGCGGCCTCTGAGTGGTGAAAACGACTCCACCTTCATCTaGTCCTTCCGGAGTCCGGCA +
Preference number: 4 (lower is better)
Translates to: KVQARPQPHTWRPLSGENDSTFI*SFRSPA
Trigger: TGCCGGACTCCGGAAGGAGCAGATGAAGGTGGAGTC...GTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTGGCCTGAACCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR CCA 90 bp GCCTTCTCAGAAACTACGAGAAGGCAGGGGCCTAAGAGAGGCATCCTGACAGTTAGGCAAGGCCATGCCTaGGAGCACGGGGACACAGCC +
Preference number: 4 (lower is better)
Translates to: AFSETTRRQGPKRGILTVRQGHA*EHGDTA
Trigger: GGCTGTGTCCCCGTGCTCCCAGGCATGGCCTTGCCT...AACTGTCAGGATGCCTCTCTTAGGCCCCTGCCTTCTCGTAGTTTCTGAGAAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR CCA 90 bp CCAGTGAGCGAGCGATTGAGCAAGCTTTTGTACACAGGCATGTCTGCAGGGGGATTCCGGAGTCCGGCATaGAGAGCGGCACTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: PVSERLSKLLYTGMSAGGFRSPA*RAALSA
Trigger: GGCTGAGAGTGCCGCTCTCCATGCCGGACTCCGGAA...TCCCCCTGCAGACATGCCTGTGTACAAAAGCTTGCTCAATCGCTCGCTCACTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR TCA 90 bp AGCTGGCAGCCAGGTCGCAGGGCAGAGCTGTCTTGTGACTCCCTCTCCACCAGCCTTCAGAATCCGAGCTaGAACTCAGGGATTTGGTCT +
Preference number: 4 (lower is better)
Translates to: SWQPGRRAELSCDSLSTSLQNPS*NSGIWS
Trigger: AGACCAAATCCCTGAGTTTCAGCTCGGATTCTGAAG...GCTGGTGGAGAGGGAGTCACAAGACAGCTCTGCCCTGCGACCTGGCTGCCAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR GCA 90 bp GCCTTCTCAGAAACTACGAGAAGGCAGGGGCCTAAGAGAGGCATCCTGACAGTTGTCCACTTGGCCCACTaGACGGGCGACAGGATCTGC +
Preference number: 4 (lower is better)
Translates to: AFSETTRRQGPKRGILTVVHLAH*TGDRIC
Trigger: GCAGATCCTGTCGCCCGTGCAGTGGGCCAAGTGGAC...AACTGTCAGGATGCCTCTCTTAGGCCCCTGCCTTCTCGTAGTTTCTGAGAAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR GCA 90 bp GCACTCCCCAGTAGAGCTAGGTTCCCAGCCCCTACCGAGTCTGAAGCTGGCTTTGATTTGGTCTCGGCTTaGGAGTCCTCTTCCTCCTCG +
Preference number: 4 (lower is better)
Translates to: ALPSRARFPAPTESEAGFDLVSA*ESSSSS
Trigger: CGAGGAGGAAGAGGACTCGCAAGCCGAGACCAAATC...AAAGCCAGCTTCAGACTCGGTAGGGGCTGGGAACCTAGCTCTACTGGGGAGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR GCA 90 bp GCCAGCTTCTCCTCATCAGTCGCGTGGCCGTCCCTGTTGGGAATCTCTGAGATCTGGGCTTTCTTAGCTTaGTTCTGCTGGCCACGGGCT +
Preference number: 4 (lower is better)
Translates to: ASFSSSVAWPSLLGISEIWAFLA*FCWPRA
Trigger: AGCCCGTGGCCAGCAGAAGCAAGCTAAGAAAGCCCA...GATCTCAGAGATTCCCAACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR CCA 90 bp GATCTTCGAGATCACGGCTCCTTCATCCTGGGAACACGCGTCCAAATCGAGAGGTGGCTTCCGGTGTGGTaGAAGGCAAGGCCATGCCTG +
Preference number: 4 (lower is better)
Translates to: DLRDHGSFILGTRVQIERWLPVW*KARPCL
Trigger: CAGGCATGGCCTTGCCTTCCACCACACCGGAAGCCA...CCTCTCGATTTGGACGCGTGTTCCCAGGATGAAGGAGCCGTGATCTCGAAGATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR CCA 90 bp AAGGTTCAGGCCAGACCTCAGCCCCACACTTGGCGGCCTCTGAGTGGTGAAAACGCCTCTGTCCATCACTaGCTCATCCTGAGTGGCTTC +
Preference number: 4 (lower is better)
Translates to: KVQARPQPHTWRPLSGENASVHH*LILSGF
Trigger: GAAGCCACTCAGGATGAGCCAGTGATGGACAGAGGC...GTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTGGCCTGAACCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR CCA 90 bp GACGACGTGGAGGCCAGCTTCTCCTCATCAGTCGCGTGGCCGTCCCTGTTGGGATCAGGGAGACAGGTTTaGGCTTTCTTAGCTTGCTTC +
Preference number: 4 (lower is better)
Translates to: DDVEASFSSSVAWPSLLGSGRQV*AFLACF
Trigger: GAAGCAAGCTAAGAAAGCCCAAACCTGTCTCCCTGA...TCCCAACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGGCCTCCACGTCGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR CCA 90 bp GCCAATCCCGGTGATGAATCACAAGACTCCTTGAGAGGCGATCTGATTGGAGTTGCTGCGAGGACTGGCTaGCCCACTGGCTCTCCCTCC +
Preference number: 4 (lower is better)
Translates to: ANPGDESQDSLRGDLIGVAARTG*PTGSPS
Trigger: GGAGGGAGAGCCAGTGGGCCAGCCAGTCCTCGCAGC...AACTCCAATCAGATCGCCTCTCAAGGAGTCTTGTGATTCATCACCGGGATTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000209827.2
ENSMUST00000210767.2
CDS-3UTR CCA 90 bp TCCTTCATCCTGGGAACACGCGTCCAAATCGAGAGGCTGAGCTTCGTATTTCTTGCTGCGAGGACTGGCTaGCCCACTGGCTCTCCCTCC +
Preference number: 4 (lower is better)
Translates to: SFILGTRVQIERLSFVFLAARTG*PTGSPS
Trigger: GGAGGGAGAGCCAGTGGGCCAGCCAGTCCTCGCAGC...AAGAAATACGAAGCTCAGCCTCTCGATTTGGACGCGTGTTCCCAGGATGAAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210767.2
3UTR CAA 72 bp GCCAGCTTCTCCTCATCAGTCGCGTGGCCGTCCCTGTaGGGAATCTCTGAGATCTTCGAGATCACGGCTCCT +
Preference number: 4 (lower is better)
Translates to: ASFSSSVAWPSL*GISEIFEITAP
Trigger: AGGAGCCGTGATCTCGAAGATCTCAGAGATTCCCAACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000210767.2
ENSMUST00000211622.2
CDS-3UTR TCA 90 bp GAGGCCAGCTTCTCCTCATCAGTCGCGTGGCCGTCCCTGTTGGGAATCTCTGAGAGCCTTAGGGAGAGGTaGACCCTCCATCAACATTTC +
Preference number: 4 (lower is better)
Translates to: EASFSSSVAWPSLLGISESLRER*TLHQHF
Trigger: GAAATGTTGATGGAGGGTTCACCTCTCCCTAAGGCT...CTCAGAGATTCCCAACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGGCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR GCA 90 bp GCACTCCCCAGTAGAGCTAGGTTCCCAGCCCCTACCGAGTCTGAAGCTGGCTTTGACTCCAGCAGTCCATaGACAGCCAGTTCCTCTTTC +
Preference number: 4 (lower is better)
Translates to: ALPSRARFPAPTESEAGFDSSSP*TASSSF
Trigger: GAAAGAGGAACTGGCTGTGCATGGACTGCTGGAGTC...AAAGCCAGCTTCAGACTCGGTAGGGGCTGGGAACCTAGCTCTACTGGGGAGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR GCA 90 bp CCAGTGAGCGAGCGATTGAGCAAGCTTTTGTACACAGGCATGTCTGCAGGGGGAGACTCCACCTTCATCTaGTCCTTCCGGAGTCCGGCA +
Preference number: 4 (lower is better)
Translates to: PVSERLSKLLYTGMSAGGDSTFI*SFRSPA
Trigger: TGCCGGACTCCGGAAGGAGCAGATGAAGGTGGAGTC...TCCCCCTGCAGACATGCCTGTGTACAAAAGCTTGCTCAATCGCTCGCTCACTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR CCA 90 bp CGACGTGGAGGCCAGCTTCTCCTCATCAGTCGCGTGGCCGTCCCTGTTGGGAATGAGAGGCGATCTGATTaGAGTTTCAGCTTCAGGAGT +
Preference number: 4 (lower is better)
Translates to: RRGGQLLLISRVAVPVGNERRSD*SFSFRS
Trigger: ACTCCTGAAGCTGAAACTCCAATCAGATCGCCTCTC...ATTCCCAACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGGCCTCCACGTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR CCA 90 bp GATTATCTCTTCTCTGATCAACGTGAGCACGGCAGTCTTGTCTGCTTCGCTGAGAGGCAAGGCCATGCCTaGGAGCACGGGGACACAGCC +
Preference number: 4 (lower is better)
Translates to: DYLFSDQREHGSLVCFAERQGHA*EHGDTA
Trigger: GGCTGTGTCCCCGTGCTCCCAGGCATGGCCTTGCCT...CTCAGCGAAGCAGACAAGACTGCCGTGCTCACGTTGATCAGAGAAGAGATAATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR CCA 90 bp CTGGGAACACGCGTCCAAATCGAGAGGCTGAGCTTCGTATTTCTTCACTTTGCAGGAGAGGTGGGTCCCTaGACCCACCCTGCAGCTCGA +
Preference number: 4 (lower is better)
Translates to: LGTRVQIERLSFVFLHFAGEVGP*THPAAR
Trigger: TCGAGCTGCAGGGTGGGTCCAGGGACCCACCTCTCC...TGCAAAGTGAAGAAATACGAAGCTCAGCCTCTCGATTTGGACGCGTGTTCCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR CCA 90 bp GAGGCCAGCTTCTCCTCATCAGTCGCGTGGCCGTCCCTGTTGGGAATCTCTGAGAAATCATCCTCAAGTTaGAGAGGTGGGTCCCTGGAC +
Preference number: 4 (lower is better)
Translates to: EASFSSSVAWPSLLGISEKSSSS*RGGSLD
Trigger: GTCCAGGGACCCACCTCTCCAACTTGAGGATGATTT...CTCAGAGATTCCCAACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGGCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR TCA 90 bp AGCTGGCAGCCAGGTCGCAGGGCAGAGCTGTCTTGTGACTCCCTCTCCACCAGCCTTCTTCATTCTTCTTaGATCCTTCTAGCACGCCTT +
Preference number: 4 (lower is better)
Translates to: SWQPGRRAELSCDSLSTSLLHSS*ILLARL
Trigger: AAGGCGTGCTAGAAGGATTCAAGAAGAATGAAGAAG...GCTGGTGGAGAGGGAGTCACAAGACAGCTCTGCCCTGCGACCTGGCTGCCAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR GCA 90 bp TCCCCTTCCCAGCATTCAAGCAGTCTTTGTTTAGAATATTCCCAGGGGCTGGTTGACACAGCCATGGGCTaGTGCTGTCCCCAGAGCCGC +
Preference number: 4 (lower is better)
Translates to: SPSQHSSSLCLEYSQGLVDTAMG*CCPQSR
Trigger: GCGGCTCTGGGGACAGCAGCAGCCCATGGCTGTGTC...AACCAGCCCCTGGGAATATTCTAAACAAAGACTGCTTGAATGCTGGGAAGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR TCA 90 bp AGGCCAGCTTCTCCTCATCAGTCGCGTGGCCGTCCCTGTTGGGAATCTCTGAGACTTCAGAATCCGAGCTaGAACTCAGGGATTTGGTCT +
Preference number: 4 (lower is better)
Translates to: RPASPHQSRGRPCWESLRLQNPS*NSGIWS
Trigger: AGACCAAATCCCTGAGTTTCAGCTCGGATTCTGAAG...TCTCAGAGATTCCCAACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR CCA 90 bp AAGGTTCAGGCCAGACCTCAGCCCCACACTTGGCGGCCTCTGAGTGGTGAAAACCTGCTCAACACCTACTaGCTTACTGACGCCATCTTT +
Preference number: 4 (lower is better)
Translates to: KVQARPQPHTWRPLSGENLLNTY*LTDAIF
Trigger: AAAGATGGCGTCAGTAAGCCAGTAGGTGTTGAGCAG...GTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTGGCCTGAACCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
3UTR CAA 72 bp CGGCAAACGCTACCACCAGACACAGCTTTCAAGTCTTaGAAAACAAGGGCCCCACGGTATAGCCCAGTCGAG +
Preference number: 4 (lower is better)
Translates to: RQTLPPDTAFKS*KTRAPRYSPVE
Trigger: CTCGACTGGGCTATACCGTGGGGCCCTTGTTTTCAAAGACTTGAAAGCTGTGTCTGGTGGTAGCGTTTGCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR TCA 90 bp TCACGGCTCCTTCATCCTGGGAACACGCGTCCAAATCGAGAGGCTGAGCTTCGTAGTGGTCTGGCTTACTaGCGCCATCTTTTCGTATAC +
Preference number: 4 (lower is better)
Translates to: SRLLHPGNTRPNREAELRSGLAY*RHLFVY
Trigger: GTATACGAAAAGATGGCGTCAGTAAGCCAGACCACT...ACGAAGCTCAGCCTCTCGATTTGGACGCGTGTTCCCAGGATGAAGGAGCCGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR GCA 90 bp CTAGTTCATGTCCCCTGTACGGCAGCTTCATTTAGCAGGGCCTGTTATTCAAGGAAGCTGGGGTTGGCTTaGAGGGATCCCCGGAGTCAT +
Preference number: 4 (lower is better)
Translates to: LVHVPCTAASFSRACYSRKLGLA*RDPRSH
Trigger: ATGACTCCGGGGATCCCTGCAAGCCAACCCCAGCTT...CCTTGAATAACAGGCCCTGCTAAATGAAGCTGCCGTACAGGGGACATGAACTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR CCA 90 bp AATGCTGACGGACAGGTTAAGAATTGCCTGTACTTTGGCAAAGCAGAACTGAAGCGGACCACGTCCACTTaGCCCACTGCACGGGCGACA +
Preference number: 4 (lower is better)
Translates to: NADGQVKNCLYFGKAELKRTTST*PTARAT
Trigger: TGTCGCCCGTGCAGTGGGCCAAGTGGACGTGGTCCG...CTTCAGTTCTGCTTTGCCAAAGTACAGGCAATTCTTAACCTGTCCGTCAGCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR CCA 90 bp TCCCCTTCCCAGCATTCAAGCAGTCTTTGTTTAGAATATTCCCAGGGGCTGGTTTGGCTTCCGGTGTGGTaGAAGGCAAGGCCATGCCTG +
Preference number: 4 (lower is better)
Translates to: SPSQHSSSLCLEYSQGLVWLPVW*KARPCL
Trigger: CAGGCATGGCCTTGCCTTCCACCACACCGGAAGCCA...AACCAGCCCCTGGGAATATTCTAAACAAAGACTGCTTGAATGCTGGGAAGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR CCA 90 bp TCCTTCATCCTGGGAACACGCGTCCAAATCGAGAGGCTGAGCTTCGTATTTCTTTTAGCTTGCTTCTGCTaGCCACGGGCTCTGGACAGG +
Preference number: 4 (lower is better)
Translates to: SFILGTRVQIERLSFVFLLACFC*PRALDR
Trigger: CCTGTCCAGAGCCCGTGGCCAGCAGAAGCAAGCTAA...AAGAAATACGAAGCTCAGCCTCTCGATTTGGACGCGTGTTCCCAGGATGAAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR CCA 90 bp TCACGGCTCCTTCATCCTGGGAACACGCGTCCAAATCGAGAGGCTGAGCTTCGTGTGCCAGTTTGTTACTaGGTTTCCTGCCAGATTGCT +
Preference number: 4 (lower is better)
Translates to: SRLLHPGNTRPNREAELRVPVCY*VSCQIA
Trigger: AGCAATCTGGCAGGAAACCCAGTAACAAACTGGCAC...ACGAAGCTCAGCCTCTCGATTTGGACGCGTGTTCCCAGGATGAAGGAGCCGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
3UTR CAA 72 bp CCACTAGCTGGGATACCCCATGCTTCCACTCACTCCTaGTTTGAAGCAAGAACTCACATAGTCCAGGCTGGC +
Preference number: 4 (lower is better)
Translates to: PLAGIPHASTHS*FEARTHIVQAG
Trigger: GCCAGCCTGGACTATGTGAGTTCTTGCTTCAAACAAGGAGTGAGTGGAAGCATGGGGTATCCCAGCTAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CAA 72 bp AAGCAGTCTTTGTTTAGAATATTCCCAGGGGCTGGTTaGGAGAACGAGCCAGAGGACTCTTTACGGCCGGCC +
Preference number: 4 (lower is better)
Translates to: KQSLFRIFPGAG*ENEPEDSLRPA
Trigger: GGCCGGCCGTAAAGAGTCCTCTGGCTCGTTCTCCAAACCAGCCCCTGGGAATATTCTAAACAAAGACTGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR GCA 90 bp AATGCTGACGGACAGGTTAAGAATTGCCTGTACTTTGGCAAAGCAGAACTGAAGAGGTCCGCCAGCGCCTaGTCCTTCTCCATGGTCAGC +
Preference number: 4 (lower is better)
Translates to: NADGQVKNCLYFGKAELKRSASA*SFSMVS
Trigger: GCTGACCATGGAGAAGGAGCAGGCGCTGGCGGACCT...CTTCAGTTCTGCTTTGCCAAAGTACAGGCAATTCTTAACCTGTCCGTCAGCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR GCA 90 bp AGACTCCTTGAGAGGCGATCTGATTGGAGTTTCAGCTTCAGGAGTCTCAAAATTCTTTGCACCACCTGCTaGGAGGACTGGCTGGCCCAC +
Preference number: 4 (lower is better)
Translates to: RLLERRSDWSFSFRSLKILCTTC*EDWLAH
Trigger: GTGGGCCAGCCAGTCCTCGCAGCAGGTGGTGCAAAG...AATTTTGAGACTCCTGAAGCTGAAACTCCAATCAGATCGCCTCTCAAGGAGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000209827.2
ENSMUST00000210767.2
CDS-3UTR CCA 90 bp CCAGTGAGCGAGCGATTGAGCAAGCTTTTGTACACAGGCATGTCTGCAGGGGGAGAGAGGCGATCTGATTaGAGTTTCAGCTTCAGGAGT +
Preference number: 4 (lower is better)
Translates to: PVSERLSKLLYTGMSAGGERRSD*SFSFRS
Trigger: ACTCCTGAAGCTGAAACTCCAATCAGATCGCCTCTC...TCCCCCTGCAGACATGCCTGTGTACAAAAGCTTGCTCAATCGCTCGCTCACTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR CCA 90 bp TCCCCTTCCCAGCATTCAAGCAGTCTTTGTTTAGAATATTCCCAGGGGCTGGTTTTAGCTTGCTTCTGCTaGCCACGGGCTCTGGACAGG +
Preference number: 4 (lower is better)
Translates to: SPSQHSSSLCLEYSQGLVLACFC*PRALDR
Trigger: CCTGTCCAGAGCCCGTGGCCAGCAGAAGCAAGCTAA...AACCAGCCCCTGGGAATATTCTAAACAAAGACTGCTTGAATGCTGGGAAGGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR CCA 90 bp AAGCCATTTCTCCAACCACAGATAACTTCTGTCTGCTTGTGGGTTGTTGGGGTTCTCAAGTTGGAGAGGTaGGTCCCTGGACCCACCCTG +
Preference number: 4 (lower is better)
Translates to: KPFLQPQITSVCLWVVGVLKLER*VPGPTL
Trigger: CAGGGTGGGTCCAGGGACCCACCTCTCCAACTTGAG...AACCCCAACAACCCACAAGCAGACAGAAGTTATCTGTGGTTGGAGAAATGGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR CCA 90 bp TTAGTGATTATCTCTTCTCTGATCAACGTGAGCACGGCAGTCTTGTCTGCTTCGCTCAAGTTGGAGAGGTaGGTCCCTGGACCCACCCTG +
Preference number: 4 (lower is better)
Translates to: LVIISSLINVSTAVLSASLKLER*VPGPTL
Trigger: CAGGGTGGGTCCAGGGACCCACCTCTCCAACTTGAG...CGAAGCAGACAAGACTGCCGTGCTCACGTTGATCAGAGAAGAGATAATCACTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR CCA 90 bp GCCTTCTCAGAAACTACGAGAAGGCAGGGGCCTAAGAGAGGCATCCTGACAGTTAAATCATCCTCAAGTTaGAGAGGTGGGTCCCTGGAC +
Preference number: 4 (lower is better)
Translates to: AFSETTRRQGPKRGILTVKSSSS*RGGSLD
Trigger: GTCCAGGGACCCACCTCTCCAACTTGAGGATGATTT...AACTGTCAGGATGCCTCTCTTAGGCCCCTGCCTTCTCGTAGTTTCTGAGAAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR GCA 90 bp CTAGTTCATGTCCCCTGTACGGCAGCTTCATTTAGCAGGGCCTGTTATTCAAGGGACTCCAGCAGTCCATaGACAGCCAGTTCCTCTTTC +
Preference number: 4 (lower is better)
Translates to: LVHVPCTAASFSRACYSRDSSSP*TASSSF
Trigger: GAAAGAGGAACTGGCTGTGCATGGACTGCTGGAGTC...CCTTGAATAACAGGCCCTGCTAAATGAAGCTGCCGTACAGGGGACATGAACTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR TCA 90 bp AAATGTGCAATAAACACTTGGCACGTTAGTACAGTGGGTATGTATTGGCAAACAGACCCCAGCCCCCGCTaGCTTCTGAGCACACGACGA +
Preference number: 4 (lower is better)
Translates to: KCAINTWHVSTVGMYWQTDPSPR*LLSTRR
Trigger: TCGTCGTGTGCTCAGAAGTCAGCGGGGGCTGGGGTC...TGTTTGCCAATACATACCCACTGTACTAACGTGCCAAGTGTTTATTGCACATTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR TCA 90 bp TCCCCTTCCCAGCATTCAAGCAGTCTTTGTTTAGAATATTCCCAGGGGCTGGTTGCTGCTCTTCCTGCTTaGCTCTGGCTAAGTAGTCCT +
Preference number: 4 (lower is better)
Translates to: SPSQHSSSLCLEYSQGLVAALPA*LWLSSP
Trigger: AGGACTACTTAGCCAGAGTCAAGCAGGAAGAGCAGC...AACCAGCCCCTGGGAATATTCTAAACAAAGACTGCTTGAATGCTGGGAAGGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR GCA 90 bp AAGCCATTTCTCCAACCACAGATAACTTCTGTCTGCTTGTGGGTTGTTGGGGTTGATTTGGTCTCGGCTTaGGAGTCCTCTTCCTCCTCG +
Preference number: 4 (lower is better)
Translates to: KPFLQPQITSVCLWVVGVDLVSA*ESSSSS
Trigger: CGAGGAGGAAGAGGACTCGCAAGCCGAGACCAAATC...AACCCCAACAACCCACAAGCAGACAGAAGTTATCTGTGGTTGGAGAAATGGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR GCA 90 bp AAGGTTCAGGCCAGACCTCAGCCCCACACTTGGCGGCCTCTGAGTGGTGAAAACTTTTTCAATTACTTCTaGTACCAACTGTTCATCGGC +
Preference number: 4 (lower is better)
Translates to: KVQARPQPHTWRPLSGENFFNYF*YQLFIG
Trigger: GCCGATGAACAGTTGGTAGCAGAAGTAATTGAAAAA...GTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTGGCCTGAACCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR GCA 90 bp AAGCCATTTCTCCAACCACAGATAACTTCTGTCTGCTTGTGGGTTGTTGGGGTTTGGGCTTTCTTAGCTTaGTTCTGCTGGCCACGGGCT +
Preference number: 4 (lower is better)
Translates to: KPFLQPQITSVCLWVVGVWAFLA*FCWPRA
Trigger: AGCCCGTGGCCAGCAGAAGCAAGCTAAGAAAGCCCA...AACCCCAACAACCCACAAGCAGACAGAAGTTATCTGTGGTTGGAGAAATGGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR CCA 90 bp AAATGTGCAATAAACACTTGGCACGTTAGTACAGTGGGTATGTATTGGCAAACACGGACCACGTCCACTTaGCCCACTGCACGGGCGACA +
Preference number: 4 (lower is better)
Translates to: KCAINTWHVSTVGMYWQTRTTST*PTARAT
Trigger: TGTCGCCCGTGCAGTGGGCCAAGTGGACGTGGTCCG...TGTTTGCCAATACATACCCACTGTACTAACGTGCCAAGTGTTTATTGCACATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR CCA 90 bp CCAGCTTCTCCTCATCAGTCGCGTGGCCGTCCCTGTTGGGAATCTCTGAGATCTCATCTGTACAATTCCTaGTTTCTATTGAAAACGGCC +
Preference number: 4 (lower is better)
Translates to: PASPHQSRGRPCWESLRSHLYNS*FLLKTA
Trigger: GGCCGTTTTCAATAGAAACCAGGAATTGTACAGATG...AGATCTCAGAGATTCCCAACAGGGACGGCCACGCGACTGATGAGGAGAAGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR CCA 90 bp TCCCCTTCCCAGCATTCAAGCAGTCTTTGTTTAGAATATTCCCAGGGGCTGGTTGGGAGTTCTGCAGAATaGGGCCACTCCCGAAGAAAT +
Preference number: 4 (lower is better)
Translates to: SPSQHSSSLCLEYSQGLVGSSAE*GHSRRN
Trigger: ATTTCTTCGGGAGTGGCCCCATTCTGCAGAACTCCC...AACCAGCCCCTGGGAATATTCTAAACAAAGACTGCTTGAATGCTGGGAAGGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR CCA 90 bp GCCTTCTCAGAAACTACGAGAAGGCAGGGGCCTAAGAGAGGCATCCTGACAGTTTTATTTGGGTCAAAGTaGTGGGAGCATTTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: AFSETTRRQGPKRGILTVLFGSK*WEHLEE
Trigger: CTCCTCCAAATGCTCCCACCACTTTGACCCAAATAA...AACTGTCAGGATGCCTCTCTTAGGCCCCTGCCTTCTCGTAGTTTCTGAGAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR CCA 90 bp TCCCCTTCCCAGCATTCAAGCAGTCTTTGTTTAGAATATTCCCAGGGGCTGGTTTCTCAGCCTTCGCCTTaGAGCGAACCTGAGCAATCT +
Preference number: 4 (lower is better)
Translates to: SPSQHSSSLCLEYSQGLVSQPSP*SEPEQS
Trigger: AGATTGCTCAGGTTCGCTCCAAGGCGAAGGCTGAGA...AACCAGCCCCTGGGAATATTCTAAACAAAGACTGCTTGAATGCTGGGAAGGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
3UTR CAA 72 bp GGTTCTGCCAATCCCGGTGATGAATCACAAGACTCCTaGAGAGGCGATCTGATTGGAGTTTCAGCTTCAGGA +
Preference number: 4 (lower is better)
Translates to: GSANPGDESQDS*RGDLIGVSASG
Trigger: TCCTGAAGCTGAAACTCCAATCAGATCGCCTCTCAAGGAGTCTTGTGATTCATCACCGGGATTGGCAGAACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000209827.2
ENSMUST00000210767.2
CDS-3UTR TCA 90 bp GCCTTCTCAGAAACTACGAGAAGGCAGGGGCCTAAGAGAGGCATCCTGACAGTTCTTCTTCATTCTTCTTaGATCCTTCTAGCACGCCTT +
Preference number: 4 (lower is better)
Translates to: AFSETTRRQGPKRGILTVLLHSS*ILLARL
Trigger: AAGGCGTGCTAGAAGGATTCAAGAAGAATGAAGAAG...AACTGTCAGGATGCCTCTCTTAGGCCCCTGCCTTCTCGTAGTTTCTGAGAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR TCA 90 bp AAGCCATTTCTCCAACCACAGATAACTTCTGTCTGCTTGTGGGTTGTTGGGGTTGCTGCTCTTCCTGCTTaGCTCTGGCTAAGTAGTCCT +
Preference number: 4 (lower is better)
Translates to: KPFLQPQITSVCLWVVGVAALPA*LWLSSP
Trigger: AGGACTACTTAGCCAGAGTCAAGCAGGAAGAGCAGC...AACCCCAACAACCCACAAGCAGACAGAAGTTATCTGTGGTTGGAGAAATGGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR GCA 90 bp AAATGTGCAATAAACACTTGGCACGTTAGTACAGTGGGTATGTATTGGCAAACAGTCCACTTGGCCCACTaGACGGGCGACAGGATCTGC +
Preference number: 4 (lower is better)
Translates to: KCAINTWHVSTVGMYWQTVHLAH*TGDRIC
Trigger: GCAGATCCTGTCGCCCGTGCAGTGGGCCAAGTGGAC...TGTTTGCCAATACATACCCACTGTACTAACGTGCCAAGTGTTTATTGCACATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR CCA 90 bp TCCCCTTCCCAGCATTCAAGCAGTCTTTGTTTAGAATATTCCCAGGGGCTGGTTTTTGGGTCAAAGTGGTaGGAGCATTTGGAGGAGAGG +
Preference number: 4 (lower is better)
Translates to: SPSQHSSSLCLEYSQGLVFGSKW*EHLEER
Trigger: CCTCTCCTCCAAATGCTCCCACCACTTTGACCCAAA...AACCAGCCCCTGGGAATATTCTAAACAAAGACTGCTTGAATGCTGGGAAGGGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
3UTR CAA 72 bp CAAGCCACTGTGAGCCTTTCTCCTGTGTTTTATATCTaGTTTGACAGTGCTGGGGATTGGCAACAGTGCCTG +
Preference number: 4 (lower is better)
Translates to: QATVSLSPVFYI*FDSAGDWQQCL
Trigger: CAGGCACTGTTGCCAATCCCCAGCACTGTCAAACAAGATATAAAACACAGGAGAAAGGCTCACAGTGGCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR TCA 90 bp AAGCCATTTCTCCAACCACAGATAACTTCTGTCTGCTTGTGGGTTGTTGGGGTTAGCCTTAGGGAGAGGTaGACCCTCCATCAACATTTC +
Preference number: 4 (lower is better)
Translates to: KPFLQPQITSVCLWVVGVSLRER*TLHQHF
Trigger: GAAATGTTGATGGAGGGTTCACCTCTCCCTAAGGCT...AACCCCAACAACCCACAAGCAGACAGAAGTTATCTGTGGTTGGAGAAATGGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR TCA 90 bp TCCCCTTCCCAGCATTCAAGCAGTCTTTGTTTAGAATATTCCCAGGGGCTGGTTCACCTACTGGCTTACTaGCGCCATCTTTTCGTATAC +
Preference number: 4 (lower is better)
Translates to: SPSQHSSSLCLEYSQGLVHLLAY*RHLFVY
Trigger: GTATACGAAAAGATGGCGTCAGTAAGCCAGTAGGTG...AACCAGCCCCTGGGAATATTCTAAACAAAGACTGCTTGAATGCTGGGAAGGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR TCA 90 bp AATGCTGACGGACAGGTTAAGAATTGCCTGTACTTTGGCAAAGCAGAACTGAAGCCTGTTGGGAATCTCTaGGATCTTCGAGATCACGGC +
Preference number: 4 (lower is better)
Translates to: NADGQVKNCLYFGKAELKPVGNL*DLRDHG
Trigger: GCCGTGATCTCGAAGATCTCAGAGATTCCCAACAGG...CTTCAGTTCTGCTTTGCCAAAGTACAGGCAATTCTTAACCTGTCCGTCAGCATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR GCA 90 bp GATCTTCGAGATCACGGCTCCTTCATCCTGGGAACACGCGTCCAAATCGAGAGGTTTTTCAATTACTTCTaGTACCAACTGTTCATCGGC +
Preference number: 4 (lower is better)
Translates to: DLRDHGSFILGTRVQIERFFNYF*YQLFIG
Trigger: GCCGATGAACAGTTGGTAGCAGAAGTAATTGAAAAA...CCTCTCGATTTGGACGCGTGTTCCCAGGATGAAGGAGCCGTGATCTCGAAGATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR GCA 90 bp ATTGTCAAGCCATTTCTCCAACCACAGATAACTTCTGTCTGCTTGTGGGTTGTTAGGGCCTGGTATCGCTaGTCTTCCTGCTTGACTCTG +
Preference number: 4 (lower is better)
Translates to: IVKPFLQPQITSVCLWVVRAWYR*SSCLTL
Trigger: CAGAGTCAAGCAGGAAGAGCAGCGATACCAGGCCCT...AACAACCCACAAGCAGACAGAAGTTATCTGTGGTTGGAGAAATGGCTTGACAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR CCA 90 bp TTCAGAGCCCAAATGATTGTCAAGCCATTTCTCCAACCACAGATAACTTCTGTCCGTGGCCGTCCCTGTTaGGAATCTCTGAGATCTTCG +
Preference number: 4 (lower is better)
Translates to: FRAQMIVKPFLQPQITSVRGRPC*ESLRSS
Trigger: CGAAGATCTCAGAGATTCCCAACAGGGACGGCCACG...GACAGAAGTTATCTGTGGTTGGAGAAATGGCTTGACAATCATTTGGGCTCTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR CCA 90 bp CCAGTGAGCGAGCGATTGAGCAAGCTTTTGTACACAGGCATGTCTGCAGGGGGATCGTCCTCAATCATTTaGGCAATGGTCTTTTCATAT +
Preference number: 4 (lower is better)
Translates to: PVSERLSKLLYTGMSAGGSSSII*AMVFSY
Trigger: ATATGAAAAGACCATTGCCCAAATGATTGAGGACGA...TCCCCCTGCAGACATGCCTGTGTACAAAAGCTTGCTCAATCGCTCGCTCACTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR TCA 90 bp ATTGTCAAGCCATTTCTCCAACCACAGATAACTTCTGTCTGCTTGTGGGTTGTTCCTGTTGGGAATCTCTaGGATCTTCGAGATCACGGC +
Preference number: 4 (lower is better)
Translates to: IVKPFLQPQITSVCLWVVPVGNL*DLRDHG
Trigger: GCCGTGATCTCGAAGATCTCAGAGATTCCCAACAGG...AACAACCCACAAGCAGACAGAAGTTATCTGTGGTTGGAGAAATGGCTTGACAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR TCA 90 bp AAGCCATTTCTCCAACCACAGATAACTTCTGTCTGCTTGTGGGTTGTTGGGGTTGGTTTTCGTATCTCCTaGAGAGATCAGAAAGGGACC +
Preference number: 4 (lower is better)
Translates to: KPFLQPQITSVCLWVVGVGFRIS*RDQKGT
Trigger: GGTCCCTTTCTGATCTCTTCAGGAGATACGAAAACC...AACCCCAACAACCCACAAGCAGACAGAAGTTATCTGTGGTTGGAGAAATGGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR GCA 90 bp AAGCCATTTCTCCAACCACAGATAACTTCTGTCTGCTTGTGGGTTGTTGGGGTTGGTCTTTCCCAGCTTTaGGATCAACTCGTCACAGAT +
Preference number: 4 (lower is better)
Translates to: KPFLQPQITSVCLWVVGVGLSQL*DQLVTD
Trigger: ATCTGTGACGAGTTGATCGCAAAGCTGGGAAAGACC...AACCCCAACAACCCACAAGCAGACAGAAGTTATCTGTGGTTGGAGAAATGGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR CCA 90 bp ATTGTCAAGCCATTTCTCCAACCACAGATAACTTCTGTCTGCTTGTGGGTTGTTTCTCAGCCTTCGCCTTaGAGCGAACCTGAGCAATCT +
Preference number: 4 (lower is better)
Translates to: IVKPFLQPQITSVCLWVVSQPSP*SEPEQS
Trigger: AGATTGCTCAGGTTCGCTCCAAGGCGAAGGCTGAGA...AACAACCCACAAGCAGACAGAAGTTATCTGTGGTTGGAGAAATGGCTTGACAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR GCA 90 bp GCCTTCTCAGAAACTACGAGAAGGCAGGGGCCTAAGAGAGGCATCCTGACAGTTCTTCTTCCATTCATTTaGTTCGATCTCTTTAGTGAT +
Preference number: 4 (lower is better)
Translates to: AFSETTRRQGPKRGILTVLLPFI*FDLFSD
Trigger: ATCACTAAAGAGATCGAAGCAAATGAATGGAAGAAG...AACTGTCAGGATGCCTCTCTTAGGCCCCTGCCTTCTCGTAGTTTCTGAGAAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR GCA 90 bp AAATGTGCAATAAACACTTGGCACGTTAGTACAGTGGGTATGTATTGGCAAACAAGGGCCTGGTATCGCTaGTCTTCCTGCTTGACTCTG +
Preference number: 4 (lower is better)
Translates to: KCAINTWHVSTVGMYWQTRAWYR*SSCLTL
Trigger: CAGAGTCAAGCAGGAAGAGCAGCGATACCAGGCCCT...TGTTTGCCAATACATACCCACTGTACTAACGTGCCAAGTGTTTATTGCACATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR GCA 90 bp CTAGTTCATGTCCCCTGTACGGCAGCTTCATTTAGCAGGGCCTGTTATTCAAGGGGTCTTTTCATATTCTaGCACAATTTTCCTCATCTC +
Preference number: 4 (lower is better)
Translates to: LVHVPCTAASFSRACYSRGLFIF*HNFPHL
Trigger: GAGATGAGGAAAATTGTGGCAGAATATGAAAAGACC...CCTTGAATAACAGGCCCTGCTAAATGAAGCTGCCGTACAGGGGACATGAACTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR GCA 90 bp TTCAGAGCCCAAATGATTGTCAAGCCATTTCTCCAACCACAGATAACTTCTGTCGGTCTTTCCCAGCTTTaGGATCAACTCGTCACAGAT +
Preference number: 4 (lower is better)
Translates to: FRAQMIVKPFLQPQITSVGLSQL*DQLVTD
Trigger: ATCTGTGACGAGTTGATCGCAAAGCTGGGAAAGACC...GACAGAAGTTATCTGTGGTTGGAGAAATGGCTTGACAATCATTTGGGCTCTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR CCA 90 bp TTCAGAGCCCAAATGATTGTCAAGCCATTTCTCCAACCACAGATAACTTCTGTCGTGCCAGTTTGTTACTaGGTTTCCTGCCAGATTGCT +
Preference number: 4 (lower is better)
Translates to: FRAQMIVKPFLQPQITSVVPVCY*VSCQIA
Trigger: AGCAATCTGGCAGGAAACCCAGTAACAAACTGGCAC...GACAGAAGTTATCTGTGGTTGGAGAAATGGCTTGACAATCATTTGGGCTCTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
3UTR CAA 72 bp GATGACAGGGGAAGATACAGTTCCATGATAAAGCACTaGCTTAGCATGTTCAAGACCCTGGGTACAATCTCA +
Preference number: 4 (lower is better)
Translates to: DDRGRYSSMIKH*LSMFKTLGTIS
Trigger: TGAGATTGTACCCAGGGTCTTGAACATGCTAAGCAAGTGCTTTATCATGGAACTGTATCTTCCCCTGTCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR CCA 90 bp AAGCCATTTCTCCAACCACAGATAACTTCTGTCTGCTTGTGGGTTGTTGGGGTTCATCTGTACAATTCCTaGTTTCTATTGAAAACGGCC +
Preference number: 4 (lower is better)
Translates to: KPFLQPQITSVCLWVVGVHLYNS*FLLKTA
Trigger: GGCCGTTTTCAATAGAAACCAGGAATTGTACAGATG...AACCCCAACAACCCACAAGCAGACAGAAGTTATCTGTGGTTGGAGAAATGGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR CCA 90 bp TCCCCTTCCCAGCATTCAAGCAGTCTTTGTTTAGAATATTCCCAGGGGCTGGTTTCGTCCTCAATCATTTaGGCAATGGTCTTTTCATAT +
Preference number: 4 (lower is better)
Translates to: SPSQHSSSLCLEYSQGLVSSSII*AMVFSY
Trigger: ATATGAAAAGACCATTGCCCAAATGATTGAGGACGA...AACCAGCCCCTGGGAATATTCTAAACAAAGACTGCTTGAATGCTGGGAAGGGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR GCA 90 bp AAGCCATTTCTCCAACCACAGATAACTTCTGTCTGCTTGTGGGTTGTTGGGGTTGGTCTTTTCATATTCTaGCACAATTTTCCTCATCTC +
Preference number: 4 (lower is better)
Translates to: KPFLQPQITSVCLWVVGVGLFIF*HNFPHL
Trigger: GAGATGAGGAAAATTGTGGCAGAATATGAAAAGACC...AACCCCAACAACCCACAAGCAGACAGAAGTTATCTGTGGTTGGAGAAATGGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR CCA 90 bp AAATGTGCAATAAACACTTGGCACGTTAGTACAGTGGGTATGTATTGGCAAACATCAGGGAGACAGGTTTaGGCTTTCTTAGCTTGCTTC +
Preference number: 4 (lower is better)
Translates to: KCAINTWHVSTVGMYWQTSGRQV*AFLACF
Trigger: GAAGCAAGCTAAGAAAGCCCAAACCTGTCTCCCTGA...TGTTTGCCAATACATACCCACTGTACTAACGTGCCAAGTGTTTATTGCACATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR GCA 90 bp AAGCCATTTCTCCAACCACAGATAACTTCTGTCTGCTTGTGGGTTGTTGGGGTTCTTCTTCCATTCATTTaGTTCGATCTCTTTAGTGAT +
Preference number: 4 (lower is better)
Translates to: KPFLQPQITSVCLWVVGVLLPFI*FDLFSD
Trigger: ATCACTAAAGAGATCGAAGCAAATGAATGGAAGAAG...AACCCCAACAACCCACAAGCAGACAGAAGTTATCTGTGGTTGGAGAAATGGCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS GCA 90 bp AGAATCCGAGCTGTCCGTTGCCGCCGCCCGCTTTGCACCACCTGCTaGGAGGACTGGCTGGCCCACTGGCTCTCCCTCCTCCACCAGCGC +
Preference number: 5 (lower is better)
Translates to: RIRAVRCRRPLCTTC*EDWLAHWLSLLHQR
Trigger: GCGCTGGTGGAGGAGGGAGAGCCAGTGGGCCAGCCAGTCCTCGCAGCAGGTGGTGCAAAGCGGGCGGCGGCAACGGACAGCTCGGATTCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000209827.2
ENSMUST00000210767.2
CDS-3UTR CAA 90 bp AGCTGGCAGCCAGGTCGCAGGGCAGAGCTGTCTTGTGACTCCCTCTCCACCAGCGCGGACCACGTCCACTaGGCCCACTGCACGGGCGAC +
Preference number: 5 (lower is better)
Translates to: SWQPGRRAELSCDSLSTSADHVH*AHCTGD
Trigger: GTCGCCCGTGCAGTGGGCCAAGTGGACGTGGTCCGC...GCTGGTGGAGAGGGAGTCACAAGACAGCTCTGCCCTGCGACCTGGCTGCCAGCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS GCA 90 bp CTGGCTCATCCTGAGTGGCTTCCGGTGTGGTGGAAGGCAAGGCCATaGCTGGGAGCACGGGGACACAGCCATGGGCTGCTGCTGTCCCCA +
Preference number: 5 (lower is better)
Translates to: LAHPEWLPVWWKARP*LGARGHSHGLLLSP
Trigger: TGGGGACAGCAGCAGCCCATGGCTGTGTCCCCGTGCTCCCAGGCATGGCCTTGCCTTCCACCACACCGGAAGCCACTCAGGATGAGCCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084030.6
ENSMUST00000210488.2
ENSMUST00000211622.2
CDS GCA 90 bp GGAAGGCAAGGCCATGCCTGGGAGCACGGGGACACAGCCATGGGCTaGTGCTGTCCCCAGAGCCGCAGGGTCATCTGTACAATTCCTGGT +
Preference number: 5 (lower is better)
Translates to: GRQGHAWEHGDTAMG*CCPQSRRVICTIPG
Trigger: ACCAGGAATTGTACAGATGACCCTGCGGCTCTGGGGACAGCAGCAGCCCATGGCTGTGTCCCCGTGCTCCCAGGCATGGCCTTGCCTTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084030.6
ENSMUST00000210488.2
ENSMUST00000211622.2
CDS CCA 90 bp GTGGTGGAAGGCAAGGCCATGCCTGGGAGCACGGGGACACAGCCATaGGCTGCTGCTGTCCCCAGAGCCGCAGGGTCATCTGTACAATTC +
Preference number: 5 (lower is better)
Translates to: VVEGKAMPGSTGTQP*AAAVPRAAGSSVQF
Trigger: GAATTGTACAGATGACCCTGCGGCTCTGGGGACAGCAGCAGCCCATGGCTGTGTCCCCGTGCTCCCAGGCATGGCCTTGCCTTCCACCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084030.6
ENSMUST00000210488.2
ENSMUST00000211622.2
CDS-3UTR CAA 90 bp TCACGGCTCCTTCATCCTGGGAACACGCGTCCAAATCGAGAGGCTGAGCTTCGTGCGGACCACGTCCACTaGGCCCACTGCACGGGCGAC +
Preference number: 5 (lower is better)
Translates to: SRLLHPGNTRPNREAELRADHVH*AHCTGD
Trigger: GTCGCCCGTGCAGTGGGCCAAGTGGACGTGGTCCGC...ACGAAGCTCAGCCTCTCGATTTGGACGCGTGTTCCCAGGATGAAGGAGCCGTGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS GCA 90 bp AGGCAAGGCCATGCCTGGGAGCACGGGGACACAGCCATGGGCTGCTaGTGTCCCCAGAGCCGCAGGGTCATCTGTACAATTCCTGGTTTC +
Preference number: 5 (lower is better)
Translates to: RQGHAWEHGDTAMGC*CPQSRRVICTIPGF
Trigger: GAAACCAGGAATTGTACAGATGACCCTGCGGCTCTGGGGACAGCAGCAGCCCATGGCTGTGTCCCCGTGCTCCCAGGCATGGCCTTGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084030.6
ENSMUST00000210488.2
ENSMUST00000211622.2
CDS GCA 90 bp TTCACTTTGCAGCCGCTCCTGAAACTCAGGGATTTGGTCTCGGCTTaGGAGTCCTCTTCCTCCTCGGGGTCGCCCTCGGGACCTCCGGCT +
Preference number: 5 (lower is better)
Translates to: FTLQPLLKLRDLVSA*ESSSSSGSPSGPPA
Trigger: AGCCGGAGGTCCCGAGGGCGACCCCGAGGAGGAAGAGGACTCGCAAGCCGAGACCAAATCCCTGAGTTTCAGGAGCGGCTGCAAAGTGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084512.11
CDS CCA 90 bp CCATGCCTCTGTCCATCACTGGCTCATCCTGAGTGGCTTCCGGTGTaGTGGAAGGCAAGGCCATGCCTGGGAGCACGGGGACACAGCCAT +
Preference number: 5 (lower is better)
Translates to: PCLCPSLAHPEWLPV*WKARPCLGARGHSH
Trigger: ATGGCTGTGTCCCCGTGCTCCCAGGCATGGCCTTGCCTTCCACCACACCGGAAGCCACTCAGGATGAGCCAGTGATGGACAGAGGCATGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084030.6
ENSMUST00000210488.2
ENSMUST00000211622.2
CDS-3UTR CAA 90 bp CCAGTGAGCGAGCGATTGAGCAAGCTTTTGTACACAGGCATGTCTGCAGGGGGAGCGGACCACGTCCACTaGGCCCACTGCACGGGCGAC +
Preference number: 5 (lower is better)
Translates to: PVSERLSKLLYTGMSAGGADHVH*AHCTGD
Trigger: GTCGCCCGTGCAGTGGGCCAAGTGGACGTGGTCCGC...TCCCCCTGCAGACATGCCTGTGTACAAAAGCTTGCTCAATCGCTCGCTCACTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS TCA 90 bp GCCTCCAATGTAACCCCCATGCCTCTGTCCATCACTGGCTCATCCTaGGTGGCTTCCGGTGTGGTGGAAGGCAAGGCCATGCCTGGGAGC +
Preference number: 5 (lower is better)
Translates to: ASNVTPMPLSITGSS*VASGVVEGKAMPGS
Trigger: GCTCCCAGGCATGGCCTTGCCTTCCACCACACCGGAAGCCACTCAGGATGAGCCAGTGATGGACAGAGGCATGGGGGTTACATTGGAGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084030.6
ENSMUST00000210488.2
ENSMUST00000211622.2
CDS-3UTR CAA 90 bp AGCTGGCAGCCAGGTCGCAGGGCAGAGCTGTCTTGTGACTCCCTCTCCACCAGCCTGAAACTCAGGGATTaGGTCTCGGCTTGCGAGTCC +
Preference number: 5 (lower is better)
Translates to: SWQPGRRAELSCDSLSTSLKLRD*VSACES
Trigger: GGACTCGCAAGCCGAGACCAAATCCCTGAGTTTCAG...GCTGGTGGAGAGGGAGTCACAAGACAGCTCTGCCCTGCGACCTGGCTGCCAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS GCA 90 bp TTACCTTCAGAATCCGAGCTGAAACTCAGGGATTTGGTCTCGGCTTaGGAGTCCTCTTCCTCCTCGGGGTCGCCCTCGGGACCTCCGGCT +
Preference number: 5 (lower is better)
Translates to: LPSESELKLRDLVSA*ESSSSSGSPSGPPA
Trigger: AGCCGGAGGTCCCGAGGGCGACCCCGAGGAGGAAGAGGACTCGCAAGCCGAGACCAAATCCCTGAGTTTCAGCTCGGATTCTGAAGGTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000211622.2
CDS-3UTR CAA 90 bp AGCTGGCAGCCAGGTCGCAGGGCAGAGCTGTCTTGTGACTCCCTCTCCACCAGCCGGTCTTTCCCAGCTTaGCGATCAACTCGTCACAGA +
Preference number: 5 (lower is better)
Translates to: SWQPGRRAELSCDSLSTSRSFPA*RSTRHR
Trigger: TCTGTGACGAGTTGATCGCAAAGCTGGGAAAGACCG...GCTGGTGGAGAGGGAGTCACAAGACAGCTCTGCCCTGCGACCTGGCTGCCAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS TCA 90 bp GATCTCTGGGCCCCCGAGCCTCTCAGCACACTAGGATTCGCGTTCTaGTCCAAGCCATCAGGAAGCCATGGGGAGGAAGCCTTAGGGAGA +
Preference number: 5 (lower is better)
Translates to: DLWAPEPLSTLGFAF*SKPSGSHGEEALGR
Trigger: TCTCCCTAAGGCTTCCTCCCCATGGCTTCCTGATGGCTTGGATCAGAACGCGAATCCTAGTGTGCTGAGAGGCTCGGGGGCCCAGAGATC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000211622.2
CDS-3UTR CAA 90 bp ACTTCTGAGCACACGACGACGTGGAGGCCAGCTTCTCCTCATCAGTCGCGTGGCCGAGATTCTTGGGGTTaGGCCTCGGGTTCTGCCAAT +
Preference number: 5 (lower is better)
Translates to: TSEHTTTWRPASPHQSRGRDSWG*ASGSAN
Trigger: ATTGGCAGAACCCGAGGCCAAACCCCAAGAATCTCG...GCCACGCGACTGATGAGGAGAAGCTGGCCTCCACGTCGTCGTGTGCTCAGAAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR CAA 90 bp AGCTGGCAGCCAGGTCGCAGGGCAGAGCTGTCTTGTGACTCCCTCTCCACCAGCCTCAGGGAGACAGGTTaGGGCTTTCTTAGCTTGCTT +
Preference number: 5 (lower is better)
Translates to: SWQPGRRAELSCDSLSTSLRETG*GFLSLL
Trigger: AAGCAAGCTAAGAAAGCCCAAACCTGTCTCCCTGAG...GCTGGTGGAGAGGGAGTCACAAGACAGCTCTGCCCTGCGACCTGGCTGCCAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR CAA 90 bp CCAGTGAGCGAGCGATTGAGCAAGCTTTTGTACACAGGCATGTCTGCAGGGGGATTGTCAAAGCTGGGGTaGGCTTGCAGGGATCCCCGG +
Preference number: 5 (lower is better)
Translates to: PVSERLSKLLYTGMSAGGLSKLG*ACRDPR
Trigger: CCGGGGATCCCTGCAAGCCAACCCCAGCTTTGACAA...TCCCCCTGCAGACATGCCTGTGTACAAAAGCTTGCTCAATCGCTCGCTCACTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS GCA 90 bp GTAAAATCATCCTCAAGTTGGAGAGGTGGGTCCCTGGACCCACCCTaGAGCTCGACCCCCGAGTCACTGGTGTCGTTACTGAGAACACCA +
Preference number: 5 (lower is better)
Translates to: VKSSSSWRGGSLDPP*SSTPESLVSLLRTP
Trigger: TGGTGTTCTCAGTAACGACACCAGTGACTCGGGGGTCGAGCTGCAGGGTGGGTCCAGGGACCCACCTCTCCAACTTGAGGATGATTTTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000211622.2
CDS-3UTR CAA 90 bp CCAGTGAGCGAGCGATTGAGCAAGCTTTTGTACACAGGCATGTCTGCAGGGGGAGGATTTGGTCTCGGCTaGCGAGTCCTCTTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: PVSERLSKLLYTGMSAGGGFGLG*RVLFLL
Trigger: GAGGAGGAAGAGGACTCGCAAGCCGAGACCAAATCC...TCCCCCTGCAGACATGCCTGTGTACAAAAGCTTGCTCAATCGCTCGCTCACTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR CAA 90 bp CTGACTTCTGAGCACACGACGACGTGGAGGCCAGCTTCTCCTCATCAGTCGCGTAGGGCGCTCCTGATCTaGACATTCTCCCCATCTTCT +
Preference number: 5 (lower is better)
Translates to: LTSEHTTTWRPASPHQSRRALLI*TFSPSS
Trigger: AGAAGATGGGGAGAATGTCAAGATCAGGAGCGCCCT...ACGCGACTGATGAGGAGAAGCTGGCCTCCACGTCGTCGTGTGCTCAGAAGTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR CAA 90 bp GCCTTCTCAGAAACTACGAGAAGGCAGGGGCCTAAGAGAGGCATCCTGACAGTTGTGAGCACGGCAGTCTaGTCTGCTTCGCTGAGGCAG +
Preference number: 5 (lower is better)
Translates to: AFSETTRRQGPKRGILTVVSTAV*SASLRQ
Trigger: CTGCCTCAGCGAAGCAGACAAGACTGCCGTGCTCAC...AACTGTCAGGATGCCTCTCTTAGGCCCCTGCCTTCTCGTAGTTTCTGAGAAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR CAA 90 bp GCACTCCCCAGTAGAGCTAGGTTCCCAGCCCCTACCGAGTCTGAAGCTGGCTTTCGGTCTTTCCCAGCTTaGCGATCAACTCGTCACAGA +
Preference number: 5 (lower is better)
Translates to: ALPSRARFPAPTESEAGFRSFPA*RSTRHR
Trigger: TCTGTGACGAGTTGATCGCAAAGCTGGGAAAGACCG...AAAGCCAGCTTCAGACTCGGTAGGGGCTGGGAACCTAGCTCTACTGGGGAGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS TCA 90 bp ATCCAAGCCATCAGGAAGCCATGGGGAGGAAGCCTTAGGGAGAGGTaGACCCTCCATCAACATTTCCGGTTCAGGGGCCATCTTCTTCCT +
Preference number: 5 (lower is better)
Translates to: IQAIRKPWGGSLRER*TLHQHFRFRGHLLP
Trigger: AGGAAGAAGATGGCCCCTGAACCGGAAATGTTGATGGAGGGTTCACCTCTCCCTAAGGCTTCCTCCCCATGGCTTCCTGATGGCTTGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000211622.2
CDS-3UTR CAA 90 bp AAGGTTCAGGCCAGACCTCAGCCCCACACTTGGCGGCCTCTGAGTGGTGAAAACCAGCTCCTCAATCTCTaGATTCTTCTGCTGAAGAGC +
Preference number: 5 (lower is better)
Translates to: KVQARPQPHTWRPLSGENQLLNL*ILLLKS
Trigger: GCTCTTCAGCAGAAGAATCAAGAGATTGAGGAGCTG...GTTTTCACCACTCAGAGGCCGCCAAGTGTGGGGCTGAGGTCTGGCCTGAACCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS TCA 90 bp AATCGAGAGGCTGAGCTTCGTATTTCTTCACTTTGCAGCCGCTCCTaGAACTCAGGGATTTGGTCTCGGCTTGCGAGTCCTCTTCCTCCT +
Preference number: 5 (lower is better)
Translates to: NREAELRISSLCSRS*NSGIWSRLASPLPP
Trigger: AGGAGGAAGAGGACTCGCAAGCCGAGACCAAATCCCTGAGTTTCAGGAGCGGCTGCAAAGTGAAGAAATACGAAGCTCAGCCTCTCGATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084512.11
CDS GCA 90 bp AACACGCGTCCAAATCGAGAGGCTGAGCTTCGTATTTCTTCACTTTaGAGCCGCTCCTGGCACACTGGGAAGCCTTTTTCTGCTCACATC +
Preference number: 5 (lower is better)
Translates to: NTRPNREAELRISSL*SRSWHTGKPFSAHI
Trigger: GATGTGAGCAGAAAAAGGCTTCCCAGTGTGCCAGGAGCGGCTGCAAAGTGAAGAAATACGAAGCTCAGCCTCTCGATTTGGACGCGTGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000210016.2
CDS CCA 90 bp AACATGATTACCAGTGGCGGGACAAAAGCCGCTGCTTGTCAAAGCTaGGGTTGGCTTGCAGGGATCCCCGGAGTCATCAGTGTTAATGTT +
Preference number: 5 (lower is better)
Translates to: NMITSGGTKAAACQS*GWLAGIPGVISVNV
Trigger: AACATTAACACTGATGACTCCGGGGATCCCTGCAAGCCAACCCCAGCTTTGACAAGCAGCGGCTTTTGTCCCGCCACTGGTAATCATGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR CAA 90 bp GAGAGGCTGAGCTTCGTATTTCTTCACTTTGCAGCCGCTCAACAGAAAACAGAGTTGGGCTTTCTTAGCTaGCTTCTGCTGGCCACGGGC +
Preference number: 5 (lower is better)
Translates to: ERLSFVFLHFAAAQQKTELGFLS*LLLATG
Trigger: GCCCGTGGCCAGCAGAAGCAAGCTAAGAAAGCCCAA...CTCTGTTTTCTGTTGAGCGGCTGCAAAGTGAAGAAATACGAAGCTCAGCCTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR CAA 90 bp TCCCCTTCCCAGCATTCAAGCAGTCTTTGTTTAGAATATTCCCAGGGGCTGGTTGCGTGGCCGTCCCTGTaGGGAATCTCTGAGATCTTC +
Preference number: 5 (lower is better)
Translates to: SPSQHSSSLCLEYSQGLVAWPSL*GISEIF
Trigger: GAAGATCTCAGAGATTCCCAACAGGGACGGCCACGC...AACCAGCCCCTGGGAATATTCTAAACAAAGACTGCTTGAATGCTGGGAAGGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS GCA 90 bp CTCAACACCTACTGGCTTACTGACGCCATCTTTTCGTATACTGGGTaGCAGTTTGTTACTGGGTTTCCTGCCAGATTGCTTCGGAAGGGC +
Preference number: 5 (lower is better)
Translates to: LNTYWLTDAIFSYTG*QFVTGFPARLLRKG
Trigger: GCCCTTCCGAAGCAATCTGGCAGGAAACCCAGTAACAAACTGGCACCCAGTATACGAAAAGATGGCGTCAGTAAGCCAGTAGGTGTTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR CAA 90 bp GCCTTCTCAGAAACTACGAGAAGGCAGGGGCCTAAGAGAGGCATCCTGACAGTTCAGCTCCTCAATCTCTaGATTCTTCTGCTGAAGAGC +
Preference number: 5 (lower is better)
Translates to: AFSETTRRQGPKRGILTVQLLNL*ILLLKS
Trigger: GCTCTTCAGCAGAAGAATCAAGAGATTGAGGAGCTG...AACTGTCAGGATGCCTCTCTTAGGCCCCTGCCTTCTCGTAGTTTCTGAGAAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS TCA 90 bp TTACTCGGATCTAGCTTAGGAGACATCTGGTCGAGCAAGGCATCTTaGACTGTTGGGTCTGAAGGCTGCTCAACACCTACTGGCTTACTG +
Preference number: 5 (lower is better)
Translates to: LLGSSLGDIWSSKAS*TVGSEGCSTPTGLL
Trigger: CAGTAAGCCAGTAGGTGTTGAGCAGCCTTCAGACCCAACAGTTCAAGATGCCTTGCTCGACCAGATGTCTCCTAAGCTAGATCCGAGTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR CAA 90 bp AAGCCATTTCTCCAACCACAGATAACTTCTGTCTGCTTGTGGGTTGTTGGGGTTCTGAAACTCAGGGATTaGGTCTCGGCTTGCGAGTCC +
Preference number: 5 (lower is better)
Translates to: KPFLQPQITSVCLWVVGVLKLRD*VSACES
Trigger: GGACTCGCAAGCCGAGACCAAATCCCTGAGTTTCAG...AACCCCAACAACCCACAAGCAGACAGAAGTTATCTGTGGTTGGAGAAATGGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR CAA 90 bp TTAGTGATTATCTCTTCTCTGATCAACGTGAGCACGGCAGTCTTGTCTGCTTCGCTGAAACTCAGGGATTaGGTCTCGGCTTGCGAGTCC +
Preference number: 5 (lower is better)
Translates to: LVIISSLINVSTAVLSASLKLRD*VSACES
Trigger: GGACTCGCAAGCCGAGACCAAATCCCTGAGTTTCAG...CGAAGCAGACAAGACTGCCGTGCTCACGTTGATCAGAGAAGAGATAATCACTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR CAA 90 bp AATGCTGACGGACAGGTTAAGAATTGCCTGTACTTTGGCAAAGCAGAACTGAAGTTGGGCTTTCTTAGCTaGCTTCTGCTGGCCACGGGC +
Preference number: 5 (lower is better)
Translates to: NADGQVKNCLYFGKAELKLGFLS*LLLATG
Trigger: GCCCGTGGCCAGCAGAAGCAAGCTAAGAAAGCCCAA...CTTCAGTTCTGCTTTGCCAAAGTACAGGCAATTCTTAACCTGTCCGTCAGCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR CAA 90 bp TCCCCTTCCCAGCATTCAAGCAGTCTTTGTTTAGAATATTCCCAGGGGCTGGTTAGGGCGCTCCTGATCTaGACATTCTCCCCATCTTCT +
Preference number: 5 (lower is better)
Translates to: SPSQHSSSLCLEYSQGLVRALLI*TFSPSS
Trigger: AGAAGATGGGGAGAATGTCAAGATCAGGAGCGCCCT...AACCAGCCCCTGGGAATATTCTAAACAAAGACTGCTTGAATGCTGGGAAGGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR CAA 90 bp AATGCTGACGGACAGGTTAAGAATTGCCTGTACTTTGGCAAAGCAGAACTGAAGGCGTGGCCGTCCCTGTaGGGAATCTCTGAGATCTTC +
Preference number: 5 (lower is better)
Translates to: NADGQVKNCLYFGKAELKAWPSL*GISEIF
Trigger: GAAGATCTCAGAGATTCCCAACAGGGACGGCCACGC...CTTCAGTTCTGCTTTGCCAAAGTACAGGCAATTCTTAACCTGTCCGTCAGCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR CAA 90 bp TTCAGAGCCCAAATGATTGTCAAGCCATTTCTCCAACCACAGATAACTTCTGTCGGATTTGGTCTCGGCTaGCGAGTCCTCTTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: FRAQMIVKPFLQPQITSVGFGLG*RVLFLL
Trigger: GAGGAGGAAGAGGACTCGCAAGCCGAGACCAAATCC...GACAGAAGTTATCTGTGGTTGGAGAAATGGCTTGACAATCATTTGGGCTCTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR CAA 90 bp GAGAGGCTGAGCTTCGTATTTCTTCACTTTGCAGCCGCTCAACAGAAAACAGAGCTCAGGGAGACAGGTTaGGGCTTTCTTAGCTTGCTT +
Preference number: 5 (lower is better)
Translates to: ERLSFVFLHFAAAQQKTELRETG*GFLSLL
Trigger: AAGCAAGCTAAGAAAGCCCAAACCTGTCTCCCTGAG...CTCTGTTTTCTGTTGAGCGGCTGCAAAGTGAAGAAATACGAAGCTCAGCCTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS-3UTR CAA 90 bp TCCCCTTCCCAGCATTCAAGCAGTCTTTGTTTAGAATATTCCCAGGGGCTGGTTGCTTCTTCATTCTTCTaGAATCCTTCTAGCACGCCT +
Preference number: 5 (lower is better)
Translates to: SPSQHSSSLCLEYSQGLVASSFF*NPSSTP
Trigger: AGGCGTGCTAGAAGGATTCAAGAAGAATGAAGAAGC...AACCAGCCCCTGGGAATATTCTAAACAAAGACTGCTTGAATGCTGGGAAGGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR CAA 90 bp AAATGTGCAATAAACACTTGGCACGTTAGTACAGTGGGTATGTATTGGCAAACACGAGATTCTTGGGGTTaGGCCTCGGGTTCTGCCAAT +
Preference number: 5 (lower is better)
Translates to: KCAINTWHVSTVGMYWQTRDSWG*ASGSAN
Trigger: ATTGGCAGAACCCGAGGCCAAACCCCAAGAATCTCG...TGTTTGCCAATACATACCCACTGTACTAACGTGCCAAGTGTTTATTGCACATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS-3UTR CAA 90 bp TTCAGAGCCCAAATGATTGTCAAGCCATTTCTCCAACCACAGATAACTTCTGTCTCTGAGAACTCATGCTaGTCCTCTGCTCGTCCTCAA +
Preference number: 5 (lower is better)
Translates to: FRAQMIVKPFLQPQITSVSENSC*SSARPQ
Trigger: TTGAGGACGAGCAGAGGACAAGCATGAGTTCTCAGA...GACAGAAGTTATCTGTGGTTGGAGAAATGGCTTGACAATCATTTGGGCTCTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS CCA 90 bp GAGAACTCATGCTTGTCCTCTGCTCGTCCTCAATCATTTGGGCAATaGTCTTTTCATATTCTGCCACAATTTTCCTCATCTCCAGAACTT +
Preference number: 5 (lower is better)
Translates to: ENSCLSSARPQSFGQ*SFHILPQFSSSPEL
Trigger: AAGTTCTGGAGATGAGGAAAATTGTGGCAGAATATGAAAAGACCATTGCCCAAATGATTGAGGACGAGCAGAGGACAAGCATGAGTTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR CAA 90 bp AAATGTGCAATAAACACTTGGCACGTTAGTACAGTGGGTATGTATTGGCAAACATCTGAGAACTCATGCTaGTCCTCTGCTCGTCCTCAA +
Preference number: 5 (lower is better)
Translates to: KCAINTWHVSTVGMYWQTSENSC*SSARPQ
Trigger: TTGAGGACGAGCAGAGGACAAGCATGAGTTCTCAGA...TGTTTGCCAATACATACCCACTGTACTAACGTGCCAAGTGTTTATTGCACATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR CAA 90 bp TTCAGAGCCCAAATGATTGTCAAGCCATTTCTCCAACCACAGATAACTTCTGTCCTCGTCCTCAATCATTaGGGCAATGGTCTTTTCATA +
Preference number: 5 (lower is better)
Translates to: FRAQMIVKPFLQPQITSVLVLNH*GNGLFI
Trigger: TATGAAAAGACCATTGCCCAAATGATTGAGGACGAG...GACAGAAGTTATCTGTGGTTGGAGAAATGGCTTGACAATCATTTGGGCTCTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS-3UTR CAA 90 bp AAATGTGCAATAAACACTTGGCACGTTAGTACAGTGGGTATGTATTGGCAAACAGCTTCTTCATTCTTCTaGAATCCTTCTAGCACGCCT +
Preference number: 5 (lower is better)
Translates to: KCAINTWHVSTVGMYWQTASSFF*NPSSTP
Trigger: AGGCGTGCTAGAAGGATTCAAGAAGAATGAAGAAGC...TGTTTGCCAATACATACCCACTGTACTAACGTGCCAAGTGTTTATTGCACATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS CCA 72 bp CGGCGCCCGAACCGCGCACCGCGGACCACGTCCACTTaGCCCACTGCACGGGCGACAGGATCTGCCAGGGAC +
Preference number: 6 (lower is better)
Translates to: RRPNRAPRTTST*PTARATGSARD
Trigger: GTCCCTGGCAGATCCTGTCGCCCGTGCAGTGGGCCAAGTGGACGTGGTCCGCGGTGCGCGGTTCGGGCGCCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
ENSMUST00000211622.2
CDS CAA 72 bp CCGGCGCCCGAACCGCGCACCGCGGACCACGTCCACTaGGCCCACTGCACGGGCGACAGGATCTGCCAGGGA +
Preference number: 6 (lower is better)
Translates to: PAPEPRTADHVH*AHCTGDRICQG
Trigger: TCCCTGGCAGATCCTGTCGCCCGTGCAGTGGGCCAAGTGGACGTGGTCCGCGGTGCGCGGTTCGGGCGCCGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
ENSMUST00000211622.2
CDS CAA 90 bp TCGTCCTCTCCGGCGCCCGAACCGCGCACCGCGGACCACGTCCACTaGGCCCACTGCACGGGCGACAGGATCTGCCAGGGACTGAACGCC +
Preference number: 6 (lower is better)
Translates to: SSSPAPEPRTADHVH*AHCTGDRICQGLNA
Trigger: GGCGTTCAGTCCCTGGCAGATCCTGTCGCCCGTGCAGTGGGCCAAGTGGACGTGGTCCGCGGTGCGCGGTTCGGGCGCCGGAGAGGACGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
ENSMUST00000211622.2
CDS GCA 72 bp GAACCGCGCACCGCGGACCACGTCCACTTGGCCCACTaGACGGGCGACAGGATCTGCCAGGGACTGAACGCC +
Preference number: 6 (lower is better)
Translates to: EPRTADHVHLAH*TGDRICQGLNA
Trigger: GGCGTTCAGTCCCTGGCAGATCCTGTCGCCCGTGCAGTGGGCCAAGTGGACGTGGTCCGCGGTGCGCGGTTC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
ENSMUST00000211622.2
CDS CCA 72 bp GGCAAGGCCATGCCTGGGAGCACGGGGACACAGCCATaGGCTGCTGCTGTCCCCAGAGCCGCAGGGTCATCT +
Preference number: 6 (lower is better)
Translates to: GKAMPGSTGTQP*AAAVPRAAGSS
Trigger: AGATGACCCTGCGGCTCTGGGGACAGCAGCAGCCCATGGCTGTGTCCCCGTGCTCCCAGGCATGGCCTTGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084030.6
ENSMUST00000210488.2
ENSMUST00000211622.2
CDS GCA 72 bp GGCCATGCCTGGGAGCACGGGGACACAGCCATGGGCTaGTGCTGTCCCCAGAGCCGCAGGGTCATCTGTACA +
Preference number: 6 (lower is better)
Translates to: GHAWEHGDTAMG*CCPQSRRVICT
Trigger: TGTACAGATGACCCTGCGGCTCTGGGGACAGCAGCAGCCCATGGCTGTGTCCCCGTGCTCCCAGGCATGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084030.6
ENSMUST00000210488.2
ENSMUST00000211622.2
CDS CCA 72 bp AGTGGCTTCCGGTGTGGTGGAAGGCAAGGCCATGCCTaGGAGCACGGGGACACAGCCATGGGCTGCTGCTGT +
Preference number: 6 (lower is better)
Translates to: SGFRCGGRQGHA*EHGDTAMGCCC
Trigger: ACAGCAGCAGCCCATGGCTGTGTCCCCGTGCTCCCAGGCATGGCCTTGCCTTCCACCACACCGGAAGCCACT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084030.6
ENSMUST00000210488.2
ENSMUST00000211622.2
CDS CAA 72 bp GCAGCCGCTCCTGAAACTCAGGGATTTGGTCTCGGCTaGCGAGTCCTCTTCCTCCTCGGGGTCGCCCTCGGG +
Preference number: 6 (lower is better)
Translates to: AAAPETQGFGLG*RVLFLLGVALG
Trigger: CCCGAGGGCGACCCCGAGGAGGAAGAGGACTCGCAAGCCGAGACCAAATCCCTGAGTTTCAGGAGCGGCTGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084512.11
CDS GCA 72 bp CAGCCGCTCCTGAAACTCAGGGATTTGGTCTCGGCTTaGGAGTCCTCTTCCTCCTCGGGGTCGCCCTCGGGA +
Preference number: 6 (lower is better)
Translates to: QPLLKLRDLVSA*ESSSSSGSPSG
Trigger: TCCCGAGGGCGACCCCGAGGAGGAAGAGGACTCGCAAGCCGAGACCAAATCCCTGAGTTTCAGGAGCGGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084512.11
CDS CCA 72 bp CCATCACTGGCTCATCCTGAGTGGCTTCCGGTGTGGTaGAAGGCAAGGCCATGCCTGGGAGCACGGGGACAC +
Preference number: 6 (lower is better)
Translates to: PSLAHPEWLPVW*KARPCLGARGH
Trigger: GTGTCCCCGTGCTCCCAGGCATGGCCTTGCCTTCCACCACACCGGAAGCCACTCAGGATGAGCCAGTGATGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084030.6
ENSMUST00000210488.2
ENSMUST00000211622.2
CDS CAA 90 bp CTTCACTTTGCAGCCGCTCCTGAAACTCAGGGATTTGGTCTCGGCTaGCGAGTCCTCTTCCTCCTCGGGGTCGCCCTCGGGACCTCCGGC +
Preference number: 6 (lower is better)
Translates to: LHFAAAPETQGFGLG*RVLFLLGVALGTSG
Trigger: GCCGGAGGTCCCGAGGGCGACCCCGAGGAGGAAGAGGACTCGCAAGCCGAGACCAAATCCCTGAGTTTCAGGAGCGGCTGCAAAGTGAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084512.11
CDS GCA 72 bp TCCTCAAGTTGGAGAGGTGGGTCCCTGGACCCACCCTaGAGCTCGACCCCCGAGTCACTGGTGTCGTTACTG +
Preference number: 6 (lower is better)
Translates to: SSSWRGGSLDPP*SSTPESLVSLL
Trigger: CAGTAACGACACCAGTGACTCGGGGGTCGAGCTGCAGGGTGGGTCCAGGGACCCACCTCTCCAACTTGAGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000211622.2
CDS CCA 72 bp TGTCCATCACTGGCTCATCCTGAGTGGCTTCCGGTGTaGTGGAAGGCAAGGCCATGCCTGGGAGCACGGGGA +
Preference number: 6 (lower is better)
Translates to: CPSLAHPEWLPV*WKARPCLGARG
Trigger: TCCCCGTGCTCCCAGGCATGGCCTTGCCTTCCACCACACCGGAAGCCACTCAGGATGAGCCAGTGATGGACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084030.6
ENSMUST00000210488.2
ENSMUST00000211622.2
CDS CCA 72 bp CCCCCATGCCTCTGTCCATCACTGGCTCATCCTGAGTaGCTTCCGGTGTGGTGGAAGGCAAGGCCATGCCTG +
Preference number: 6 (lower is better)
Translates to: PPCLCPSLAHPE*LPVWWKARPCL
Trigger: CAGGCATGGCCTTGCCTTCCACCACACCGGAAGCCACTCAGGATGAGCCAGTGATGGACAGAGGCATGGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084030.6
ENSMUST00000210488.2
ENSMUST00000211622.2
CDS CCA 72 bp GACTCCACCTTCATCTGCTCCTTCCGGAGTCCGGCATaGAGAGCGGCACTCTCAGCCTTCGCCTTGGAGCGA +
Preference number: 6 (lower is better)
Translates to: DSTFICSFRSPA*RAALSAFALER
Trigger: TCGCTCCAAGGCGAAGGCTGAGAGTGCCGCTCTCCATGCCGGACTCCGGAAGGAGCAGATGAAGGTGGAGTC
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS GCA 72 bp GAATCCGAGCTGAAACTCAGGGATTTGGTCTCGGCTTaGGAGTCCTCTTCCTCCTCGGGGTCGCCCTCGGGA +
Preference number: 6 (lower is better)
Translates to: ESELKLRDLVSA*ESSSSSGSPSG
Trigger: TCCCGAGGGCGACCCCGAGGAGGAAGAGGACTCGCAAGCCGAGACCAAATCCCTGAGTTTCAGCTCGGATTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000211622.2
CDS CAA 72 bp AGAATCCGAGCTGAAACTCAGGGATTTGGTCTCGGCTaGCGAGTCCTCTTCCTCCTCGGGGTCGCCCTCGGG +
Preference number: 6 (lower is better)
Translates to: RIRAETQGFGLG*RVLFLLGVALG
Trigger: CCCGAGGGCGACCCCGAGGAGGAAGAGGACTCGCAAGCCGAGACCAAATCCCTGAGTTTCAGCTCGGATTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000211622.2
CDS CAA 90 bp ATTACCTTCAGAATCCGAGCTGAAACTCAGGGATTTGGTCTCGGCTaGCGAGTCCTCTTCCTCCTCGGGGTCGCCCTCGGGACCTCCGGC +
Preference number: 6 (lower is better)
Translates to: ITFRIRAETQGFGLG*RVLFLLGVALGTSG
Trigger: GCCGGAGGTCCCGAGGGCGACCCCGAGGAGGAAGAGGACTCGCAAGCCGAGACCAAATCCCTGAGTTTCAGCTCGGATTCTGAAGGTAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000211622.2
CDS TCA 72 bp GTAACCCCCATGCCTCTGTCCATCACTGGCTCATCCTaGGTGGCTTCCGGTGTGGTGGAAGGCAAGGCCATG +
Preference number: 6 (lower is better)
Translates to: VTPMPLSITGSS*VASGVVEGKAM
Trigger: CATGGCCTTGCCTTCCACCACACCGGAAGCCACTCAGGATGAGCCAGTGATGGACAGAGGCATGGGGGTTAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084030.6
ENSMUST00000210488.2
ENSMUST00000211622.2
CDS GCA 72 bp CCAAATCGAGAGGCTGAGCTTCGTATTTCTTCACTTTaGAGCCGCTCGCGACATCCACGGCTGTCGGGGGCG +
Preference number: 6 (lower is better)
Translates to: PNREAELRISSL*SRSRHPRLSGA
Trigger: CGCCCCCGACAGCCGTGGATGTCGCGAGCGGCTGCAAAGTGAAGAAATACGAAGCTCAGCCTCTCGATTTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000210933.2
CDS CAA 90 bp GCTTCGTATTTCTTCACTTTGCAGCCGCTCCTGAAACTCAGGGATTaGGTCTCGGCTTGCGAGTCCTCTTCCTCCTCGGGGTCGCCCTCG +
Preference number: 6 (lower is better)
Translates to: ASYFFTLQPLLKLRD*VSACESSSSSGSPS
Trigger: CGAGGGCGACCCCGAGGAGGAAGAGGACTCGCAAGCCGAGACCAAATCCCTGAGTTTCAGGAGCGGCTGCAAAGTGAAGAAATACGAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084512.11
CDS CAA 72 bp TTCTTCACTTTGCAGCCGCTCCTGAAACTCAGGGATTaGGTCTCGGCTTGCGAGTCCTCTTCCTCCTCGGGG +
Preference number: 6 (lower is better)
Translates to: FFTLQPLLKLRD*VSACESSSSSG
Trigger: CCCCGAGGAGGAAGAGGACTCGCAAGCCGAGACCAAATCCCTGAGTTTCAGGAGCGGCTGCAAAGTGAAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084512.11
CDS CCA 72 bp CCTTCGCCTTGGAGCGAACCTGAGCAATCTCCTCGTTaGCTCTGTCCAGCTTTTCCTCTGCGTGAACCTTCA +
Preference number: 6 (lower is better)
Translates to: PSPWSEPEQSPR*LCPAFPLREPS
Trigger: TGAAGGTTCACGCAGAGGAAAAGCTGGACAGAGCCAACGAGGAGATTGCTCAGGTTCGCTCCAAGGCGAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS CCA 72 bp CGCCATCTTTTCGTATACTGGGTGCCAGTTTGTTACTaGGTTTCCTGCCAGATTGCTTCGGAAGGGCGCTCC +
Preference number: 6 (lower is better)
Translates to: RHLFVYWVPVCY*VSCQIASEGRS
Trigger: GGAGCGCCCTTCCGAAGCAATCTGGCAGGAAACCCAGTAACAAACTGGCACCCAGTATACGAAAAGATGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000211622.2
CDS CAA 90 bp CCTACTGGCTTACTGACGCCATCTTTTCGTATACTGGGTGCCAGTTaGTTACTGGGTTTCCTGCCAGATTGCTTCGGAAGGGCGCTCCTG +
Preference number: 6 (lower is better)
Translates to: PTGLLTPSFRILGAS*LLGFLPDCFGRALL
Trigger: CAGGAGCGCCCTTCCGAAGCAATCTGGCAGGAAACCCAGTAACAAACTGGCACCCAGTATACGAAAAGATGGCGTCAGTAAGCCAGTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS CAA 90 bp TGGTCTGGCTTACTGACGCCATCTTTTCGTATACTGGGTGCCAGTTaGTTACTGGGTTTCCTGCCAGATTGCTTCGGAAGGGCGCTCCTG +
Preference number: 6 (lower is better)
Translates to: WSGLLTPSFRILGAS*LLGFLPDCFGRALL
Trigger: CAGGAGCGCCCTTCCGAAGCAATCTGGCAGGAAACCCAGTAACAAACTGGCACCCAGTATACGAAAAGATGGCGTCAGTAAGCCAGACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS TCA 72 bp GCTGAGCTTCGTATTTCTTCACTTTGCAGCCGCTCCTaGAACTCAGGGATTTGGTCTCGGCTTGCGAGTCCT +
Preference number: 6 (lower is better)
Translates to: AELRISSLCSRS*NSGIWSRLASP
Trigger: AGGACTCGCAAGCCGAGACCAAATCCCTGAGTTTCAGGAGCGGCTGCAAAGTGAAGAAATACGAAGCTCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084512.11
CDS CCA 72 bp GCAGGGATCCCCGGAGTCATCAGTGTTAATGTTATTTaGGTCAAAGTGGTGGGAGCATTTGGAGGAGAGGGG +
Preference number: 6 (lower is better)
Translates to: AGIPGVISVNVI*VKVVGAFGGEG
Trigger: CCCCTCTCCTCCAAATGCTCCCACCACTTTGACCCAAATAACATTAACACTGATGACTCCGGGGATCCCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS CCA 72 bp GCTGAGCTTCGTATTTCTTCACTTTGCAGCCGCTCCTaGCACACTGGGAAGCCTTTTTCTGCTCACATCCGT +
Preference number: 6 (lower is better)
Translates to: AELRISSLCSRS*HTGKPFSAHIR
Trigger: ACGGATGTGAGCAGAAAAAGGCTTCCCAGTGTGCCAGGAGCGGCTGCAAAGTGAAGAAATACGAAGCTCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000210016.2
CDS CAA 72 bp AAATTACCTTCAGAATCCGAGCTGAAACTCAGGGATTaGGTCTCGGCTTGCGAGTCCTCTTCCTCCTCGGGG +
Preference number: 6 (lower is better)
Translates to: KLPSESELKLRD*VSACESSSSSG
Trigger: CCCCGAGGAGGAAGAGGACTCGCAAGCCGAGACCAAATCCCTGAGTTTCAGCTCGGATTCTGAAGGTAATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000211622.2
CDS GCA 72 bp CCAAATCGAGAGGCTGAGCTTCGTATTTCTTCACTTTaGAGCCGCTCCTGGCACACTGGGAAGCCTTTTTCT +
Preference number: 6 (lower is better)
Translates to: PNREAELRISSL*SRSWHTGKPFS
Trigger: AGAAAAAGGCTTCCCAGTGTGCCAGGAGCGGCTGCAAAGTGAAGAAATACGAAGCTCAGCCTCTCGATTTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000210016.2
CDS CAA 90 bp TTTTCGTATACTGGGTGCCAGTTTGTTACTGGGTTTCCTGCCAGATaGCTTCGGAAGGGCGCTCCTGATCTTGACATTCTCCCCATCTTC +
Preference number: 6 (lower is better)
Translates to: FSYTGCQFVTGFPAR*LRKGAPDLDILPIF
Trigger: GAAGATGGGGAGAATGTCAAGATCAGGAGCGCCCTTCCGAAGCAATCTGGCAGGAAACCCAGTAACAAACTGGCACCCAGTATACGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000211622.2
CDS TCA 72 bp TCTAGCTTAGGAGACATCTGGTCGAGCAAGGCATCTTaGACTGTTGGGTCTGAAGGCTGCTCAACACCTACT +
Preference number: 6 (lower is better)
Translates to: SSLGDIWSSKAS*TVGSEGCSTPT
Trigger: AGTAGGTGTTGAGCAGCCTTCAGACCCAACAGTTCAAGATGCCTTGCTCGACCAGATGTCTCCTAAGCTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS CCA 72 bp CTGTCCCCAGAGCCGCAGGGTCATCTGTACAATTCCTaGTTTCTATTGAAAACGGCCTCACTACTGAGATCT +
Preference number: 6 (lower is better)
Translates to: LSPEPQGHLYNS*FLLKTASLLRS
Trigger: AGATCTCAGTAGTGAGGCCGTTTTCAATAGAAACCAGGAATTGTACAGATGACCCTGCGGCTCTGGGGACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084030.6
ENSMUST00000210488.2
ENSMUST00000211622.2
CDS CAA 72 bp TGGTCAGCTGCTGGAAACTCTTCTGAGAACTCATGCTaGTCCTCTGCTCGTCCTCAATCATTTGGGCAATGG +
Preference number: 6 (lower is better)
Translates to: WSAAGNSSENSC*SSARPQSFGQW
Trigger: CCATTGCCCAAATGATTGAGGACGAGCAGAGGACAAGCATGAGTTCTCAGAAGAGTTTCCAGCAGCTGACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS GCA 72 bp GTCTGGCTTACTGACGCCATCTTTTCGTATACTGGGTaGCAGTTTGTTACTGGGTTTCCTGCCAGATTGCTT +
Preference number: 6 (lower is better)
Translates to: VWLTDAIFSYTG*QFVTGFPARLL
Trigger: AAGCAATCTGGCAGGAAACCCAGTAACAAACTGGCACCCAGTATACGAAAAGATGGCGTCAGTAAGCCAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211622.2
CDS CAA 72 bp TTCCTGCCAGATTGCTTCGGAAGGGCGCTCCTGATCTaGACATTCTCCCCATCTTCTGTAAAATCATCCTCA +
Preference number: 6 (lower is better)
Translates to: FLPDCFGRALLI*TFSPSSVKSSS
Trigger: TGAGGATGATTTTACAGAAGATGGGGAGAATGTCAAGATCAGGAGCGCCCTTCCGAAGCAATCTGGCAGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000211622.2
CDS CAA 72 bp TTACTGACGCCATCTTTTCGTATACTGGGTGCCAGTTaGTTACTGGGTTTCCTGCCAGATTGCTTCGGAAGG +
Preference number: 6 (lower is better)
Translates to: LLTPSFRILGAS*LLGFLPDCFGR
Trigger: CCTTCCGAAGCAATCTGGCAGGAAACCCAGTAACAAACTGGCACCCAGTATACGAAAAGATGGCGTCAGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000211622.2
CDS CAA 90 bp TTACTGGGTTTCCTGCCAGATTGCTTCGGAAGGGCGCTCCTGATCTaGACATTCTCCCCATCTTCTGTAAAATCATCCTCAAGTTGGAGA +
Preference number: 6 (lower is better)
Translates to: LLGFLPDCFGRALLI*TFSPSSVKSSSSWR
Trigger: TCTCCAACTTGAGGATGATTTTACAGAAGATGGGGAGAATGTCAAGATCAGGAGCGCCCTTCCGAAGCAATCTGGCAGGAAACCCAGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000211622.2
CDS CAA 90 bp CCTTCTCCATGGTCAGCTGCTGGAAACTCTTCTGAGAACTCATGCTaGTCCTCTGCTCGTCCTCAATCATTTGGGCAATGGTCTTTTCAT +
Preference number: 6 (lower is better)
Translates to: PSPWSAAGNSSENSC*SSARPQSFGQWSFH
Trigger: ATGAAAAGACCATTGCCCAAATGATTGAGGACGAGCAGAGGACAAGCATGAGTTCTCAGAAGAGTTTCCAGCAGCTGACCATGGAGAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS GCA 72 bp TACTGGCTTACTGACGCCATCTTTTCGTATACTGGGTaGCAGTTTGTTACTGGGTTTCCTGCCAGATTGCTT +
Preference number: 6 (lower is better)
Translates to: YWLTDAIFSYTG*QFVTGFPARLL
Trigger: AAGCAATCTGGCAGGAAACCCAGTAACAAACTGGCACCCAGTATACGAAAAGATGGCGTCAGTAAGCCAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084030.6
CDS CAA 90 bp ACTCTTCTGAGAACTCATGCTTGTCCTCTGCTCGTCCTCAATCATTaGGGCAATGGTCTTTTCATATTCTGCCACAATTTTCCTCATCTC +
Preference number: 6 (lower is better)
Translates to: TLLRTHACPLLVLNH*GNGLFIFCHNFPHL
Trigger: GAGATGAGGAAAATTGTGGCAGAATATGAAAAGACCATTGCCCAAATGATTGAGGACGAGCAGAGGACAAGCATGAGTTCTCAGAAGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS GCA 72 bp GTCCTCAATCATTTGGGCAATGGTCTTTTCATATTCTaGCACAATTTTCCTCATCTCCAGAACTTCTTCCCG +
Preference number: 6 (lower is better)
Translates to: VLNHLGNGLFIF*HNFPHLQNFFP
Trigger: CGGGAAGAAGTTCTGGAGATGAGGAAAATTGTGGCAGAATATGAAAAGACCATTGCCCAAATGATTGAGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS CCA 72 bp TGCTTGTCCTCTGCTCGTCCTCAATCATTTGGGCAATaGTCTTTTCATATTCTGCCACAATTTTCCTCATCT +
Preference number: 6 (lower is better)
Translates to: CLSSARPQSFGQ*SFHILPQFSSS
Trigger: AGATGAGGAAAATTGTGGCAGAATATGAAAAGACCATTGCCCAAATGATTGAGGACGAGCAGAGGACAAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS CCA 72 bp GAACTCATGCTTGTCCTCTGCTCGTCCTCAATCATTTaGGCAATGGTCTTTTCATATTCTGCCACAATTTTC +
Preference number: 6 (lower is better)
Translates to: ELMLVLCSSSII*AMVFSYSATIF
Trigger: GAAAATTGTGGCAGAATATGAAAAGACCATTGCCCAAATGATTGAGGACGAGCAGAGGACAAGCATGAGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11
CDS CAA 72 bp AGAACTCATGCTTGTCCTCTGCTCGTCCTCAATCATTaGGGCAATGGTCTTTTCATATTCTGCCACAATTTT +
Preference number: 6 (lower is better)
Translates to: RTHACPLLVLNH*GNGLFIFCHNF
Trigger: AAAATTGTGGCAGAATATGAAAAGACCATTGCCCAAATGATTGAGGACGAGCAGAGGACAAGCATGAGTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084030.6
ENSMUST00000084512.11