Pregenerated sensors for TAC4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020872Ensembl transcript IDs: ENSMUST00000021242.5
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGACAAGGGAGAGCTGGGTCAGTCCAGCTTGTGAGGAGGCAGCCGTaGTTTGTGTGTCGTTGCTACCAGATGCCAAGAGTGAGTCCTGGG | + |
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Preference number: 1 (lower is better) Translates to: GQGRAGSVQLVRRQP*FVCRCYQMPRVSPG Trigger: CCCAGGACTCACTCTTGGCATCTGGTAGCAACGACACACAAAGCACGGCTGCCTCCTCACAAGCTGGACTGACCCAGCTCTCCCTTGTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR TCA 90 bp | GGAGGCAGCCGTGCTTTGTGTGTCGTTGCTACCAGATGCCAAGAGTaGGTCCTGGGAGAAAATGCAGAGTGTGACGAGGGCCTGGCAGGA | + |
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Preference number: 1 (lower is better) Translates to: GGSRALCVVATRCQE*VLGENAECDEGLAG Trigger: TCCTGCCAGGCCCTCGTCACACTCTGCATTTTCTCCCAGGACTCACTCTTGGCATCTGGTAGCAACGACACACAAAGCACGGCTGCCTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR TCA 90 bp | AAGCTTTGCTGTAGGGACAAGGGAGAGCTGGGTCAGTCCAGCTTGTaGGGAGGCAGCCGTGCTTTGTGTGTCGTTGCTACCAGATGCCAA | + |
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Preference number: 1 (lower is better) Translates to: KLCCRDKGELGQSSL*GGSRALCVVATRCQ Trigger: TTGGCATCTGGTAGCAACGACACACAAAGCACGGCTGCCTCCTCACAAGCTGGACTGACCCAGCTCTCCCTTGTCCCTACAGCAAAGCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR CCA 90 bp | GGCCTGGCAGGAAATACCCAAGTTGAGGACAAAAGACAGGACTGTTaGCTGAGGCTCCTCAGCTGTGATGTTCTGGGGAGAGATGGGTGG | + |
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Preference number: 1 (lower is better) Translates to: GLAGNTQVEDKRQDC*LRLLSCDVLGRDGW Trigger: CCACCCATCTCTCCCCAGAACATCACAGCTGAGGAGCCTCAGCCAACAGTCCTGTCTTTTGTCCTCAACTTGGGTATTTCCTGCCAGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR CCA 90 bp | GCCAAGAGTGAGTCCTGGGAGAAAATGCAGAGTGTGACGAGGGCCTaGCAGGAAATACCCAAGTTGAGGACAAAAGACAGGACTGTTGGC | + |
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Preference number: 1 (lower is better) Translates to: AKSESWEKMQSVTRA*QEIPKLRTKDRTVG Trigger: GCCAACAGTCCTGTCTTTTGTCCTCAACTTGGGTATTTCCTGCCAGGCCCTCGTCACACTCTGCATTTTCTCCCAGGACTCACTCTTGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR TCA 90 bp | ATTGAACTCAAGTTGTCAGGCTTGGCCACAATCGCCTTAGCCCACTaGGCCATAGCCTCAGCACAGAGGGAGATGTCTGTTGGTAGCAAC | + |
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Preference number: 1 (lower is better) Translates to: IELKLSGLATIALAH*AIASAQREMSVGSN Trigger: GTTGCTACCAACAGACATCTCCCTCTGTGCTGAGGCTATGGCTCAGTGGGCTAAGGCGATTGTGGCCAAGCCTGACAACTTGAGTTCAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR-3UTR TCA 90 bp | GCAGAGTGTGACGAGGGCCTGGCAGGAAATACCCAAGTTGAGGACAAAAGACAGGAGGCTCCTCAGCTGTaGTGTTCTGGGGAGAGATGG | + |
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Preference number: 2 (lower is better) Translates to: AECDEGLAGNTQVEDKRQEAPQL*CSGERW Trigger: CCATCTCTCCCCAGAACATCACAGCTGAGGAGCCTC...CTGTCTTTTGTCCTCAACTTGGGTATTTCCTGCCAGGCCCTCGTCACACTCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR-3UTR TCA 90 bp | GTAATGTTGGTCTCTGCTTTTCTGACATCCCACCCTCTACCCTGCATGGCTGAGGACAGGACTGTTGGCTaGGGCTCCTCAGCTGTGATG | + |
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Preference number: 2 (lower is better) Translates to: VMLVSAFLTSHPLPCMAEDRTVG*GSSAVM Trigger: CATCACAGCTGAGGAGCCTCAGCCAACAGTCCTGTC...CTCAGCCATGCAGGGTAGAGGGTGGGATGTCAGAAAAGCAGAGACCAACATTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR-3UTR TCA 90 bp | CCTGGGATACAGAGTGTGAAGCTTTGCTGTAGGGACAAGGGAGAGCTGGGTCAGAGAAAATGCAGAGTGTaGCGAGGGCCTGGCAGGAAA | + |
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Preference number: 2 (lower is better) Translates to: PGIQSVKLCCRDKGELGQRKCRV*RGPGRK Trigger: TTTCCTGCCAGGCCCTCGTCACACTCTGCATTTTCT...CTGACCCAGCTCTCCCTTGTCCCTACAGCAAAGCTTCACACTCTGTATCCCAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR-3UTR CCA 90 bp | GGTAGCAACATCAGGAATCTAAAGGGAAGAAGGCTCCTGACCCCGCCCCCAAATTCAGCTGTGATGTTCTaGGGAGAGATGGGTGGCAGA | + |
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Preference number: 2 (lower is better) Translates to: GSNIRNLKGRRLLTPPPNSAVMF*GEMGGR Trigger: TCTGCCACCCATCTCTCCCCAGAACATCACAGCTGA...ATTTGGGGGCGGGGTCAGGAGCCTTCTTCCCTTTAGATTCCTGATGTTGCTACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR-3UTR CCA 90 bp | GCCCTACTGTGTGCTAGGCCTGGGATACAGAGTGTGAAGCTTTGCTGTAGGGACAAAAGACAGGACTGTTaGCTGAGGCTCCTCAGCTGT | + |
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Preference number: 2 (lower is better) Translates to: ALLCARPGIQSVKLCCRDKRQDC*LRLLSC Trigger: ACAGCTGAGGAGCCTCAGCCAACAGTCCTGTCTTTT...GTCCCTACAGCAAAGCTTCACACTCTGTATCCCAGGCCTAGCACACAGTAGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR-3UTR GCA 90 bp | AGACCTGGGCTGTGTAATGTTGGTCTCTGCTTTTCTGACATCCCACCCTCTACCTGCTTTGTGTGTCGTTaGTACCAGATGCCAAGAGTG | + |
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Preference number: 2 (lower is better) Translates to: RPGLCNVGLCFSDIPPSTCFVCR*YQMPRV Trigger: CACTCTTGGCATCTGGTAGCAACGACACACAAAGCA...GGTAGAGGGTGGGATGTCAGAAAAGCAGAGACCAACATTACACAGCCCAGGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR-3UTR TCA 90 bp | AGCAACATCAGGAATCTAAAGGGAAGAAGGCTCCTGACCCCGCCCCCAAATACAAGGAAATACCCAAGTTaGGGACAAAAGACAGGACTG | + |
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Preference number: 2 (lower is better) Translates to: SNIRNLKGRRLLTPPPNTRKYPS*GQKTGL Trigger: CAGTCCTGTCTTTTGTCCTCAACTTGGGTATTTCCT...TGTATTTGGGGGCGGGGTCAGGAGCCTTCTTCCCTTTAGATTCCTGATGTTGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR-3UTR TCA 90 bp | AACATCAGGAATCTAAAGGGAAGAAGGCTCCTGACCCCGCCCCCAAATACAATAACCAGATGCCAAGAGTaGGTCCTGGGAGAAAATGCA | + |
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Preference number: 2 (lower is better) Translates to: NIRNLKGRRLLTPPPNTITRCQE*VLGENA Trigger: TGCATTTTCTCCCAGGACTCACTCTTGGCATCTGGT...TATTGTATTTGGGGGCGGGGTCAGGAGCCTTCTTCCCTTTAGATTCCTGATGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR-3UTR CCA 90 bp | AGGGAGATGTCTGTTGGTAGCAACATCAGGAATCTAAAGGGAAGAAGGCTCCTGGCCAAGAGTGAGTCCTaGGAGAAAATGCAGAGTGTG | + |
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Preference number: 2 (lower is better) Translates to: REMSVGSNIRNLKGRRLLAKSES*EKMQSV Trigger: CACACTCTGCATTTTCTCCCAGGACTCACTCTTGGC...CAGGAGCCTTCTTCCCTTTAGATTCCTGATGTTGCTACCAACAGACATCTCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR-3UTR GCA 90 bp | CCAAATACAATACATGCAGCGTCTTCTCCACCAGGGTCTTTTTCTTGTTTCTATTGTAATGTTGGTCTCTaGTTTTCTGACATCCCACCC | + |
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Preference number: 2 (lower is better) Translates to: PNTIHAASSPPGSFSCFYCNVGL*FSDIPP Trigger: GGGTGGGATGTCAGAAAAGCAGAGACCAACATTACA...ATAGAAACAAGAAAAAGACCCTGGTGGAGAAGACGCTGCATGTATTGTATTTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR TCA 72 bp | TGTAGGGACAAGGGAGAGCTGGGTCAGTCCAGCTTGTaGGGAGGCAGCCGTGCTTTGTGTGTCGTTGCTACC | + |
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Preference number: 3 (lower is better) Translates to: CRDKGELGQSSL*GGSRALCVVAT Trigger: GGTAGCAACGACACACAAAGCACGGCTGCCTCCTCACAAGCTGGACTGACCCAGCTCTCCCTTGTCCCTACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR GCA 72 bp | AGAGCTGGGTCAGTCCAGCTTGTGAGGAGGCAGCCGTaGTTTGTGTGTCGTTGCTACCAGATGCCAAGAGTG | + |
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Preference number: 3 (lower is better) Translates to: RAGSVQLVRRQP*FVCRCYQMPRV Trigger: CACTCTTGGCATCTGGTAGCAACGACACACAAAGCACGGCTGCCTCCTCACAAGCTGGACTGACCCAGCTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR-3UTR CAA 90 bp | GCCCTACTGTGTGCTAGGCCTGGGATACAGAGTGTGAAGCTTTGCTGTAGGGACCAAAAGACAGGACTGTaGGCTGAGGCTCCTCAGCTG | + |
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Preference number: 3 (lower is better) Translates to: ALLCARPGIQSVKLCCRDQKTGL*AEAPQL Trigger: CAGCTGAGGAGCCTCAGCCAACAGTCCTGTCTTTTG...GTCCCTACAGCAAAGCTTCACACTCTGTATCCCAGGCCTAGCACACAGTAGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR CCA 72 bp | TGTGTGTCGTTGCTACCAGATGCCAAGAGTGAGTCCTaGGAGAAAATGCAGAGTGTGACGAGGGCCTGGCAG | + |
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Preference number: 3 (lower is better) Translates to: CVSLLPDAKSES*EKMQSVTRAWQ Trigger: CTGCCAGGCCCTCGTCACACTCTGCATTTTCTCCCAGGACTCACTCTTGGCATCTGGTAGCAACGACACACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR TCA 72 bp | CGTGCTTTGTGTGTCGTTGCTACCAGATGCCAAGAGTaGGTCCTGGGAGAAAATGCAGAGTGTGACGAGGGC | + |
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Preference number: 3 (lower is better) Translates to: RALCVVATRCQE*VLGENAECDEG Trigger: GCCCTCGTCACACTCTGCATTTTCTCCCAGGACTCACTCTTGGCATCTGGTAGCAACGACACACAAAGCACG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR TCA 72 bp | AAGTTGTCAGGCTTGGCCACAATCGCCTTAGCCCACTaGGCCATAGCCTCAGCACAGAGGGAGATGTCTGTT | + |
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Preference number: 3 (lower is better) Translates to: KLSGLATIALAH*AIASAQREMSV Trigger: AACAGACATCTCCCTCTGTGCTGAGGCTATGGCTCAGTGGGCTAAGGCGATTGTGGCCAAGCCTGACAACTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR GCA 72 bp | CAGCTTGTGAGGAGGCAGCCGTGCTTTGTGTGTCGTTaGTACCAGATGCCAAGAGTGAGTCCTGGGAGAAAA | + |
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Preference number: 3 (lower is better) Translates to: QLVRRQPCFVCR*YQMPRVSPGRK Trigger: TTTTCTCCCAGGACTCACTCTTGGCATCTGGTAGCAACGACACACAAAGCACGGCTGCCTCCTCACAAGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR CCA 72 bp | GAGTCCTGGGAGAAAATGCAGAGTGTGACGAGGGCCTaGCAGGAAATACCCAAGTTGAGGACAAAAGACAGG | + |
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Preference number: 3 (lower is better) Translates to: ESWEKMQSVTRA*QEIPKLRTKDR Trigger: CCTGTCTTTTGTCCTCAACTTGGGTATTTCCTGCCAGGCCCTCGTCACACTCTGCATTTTCTCCCAGGACTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR CCA 72 bp | GGAAATACCCAAGTTGAGGACAAAAGACAGGACTGTTaGCTGAGGCTCCTCAGCTGTGATGTTCTGGGGAGA | + |
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Preference number: 3 (lower is better) Translates to: GNTQVEDKRQDC*LRLLSCDVLGR Trigger: TCTCCCCAGAACATCACAGCTGAGGAGCCTCAGCCAACAGTCCTGTCTTTTGTCCTCAACTTGGGTATTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR GCA 72 bp | TTAGACATTAGACCTGGGCTGTGTAATGTTGGTCTCTaGTTTTCTGACATCCCACCCTCTACCCTGCATGGC | + |
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Preference number: 3 (lower is better) Translates to: LDIRPGLCNVGL*FSDIPPSTLHG Trigger: GCCATGCAGGGTAGAGGGTGGGATGTCAGAAAAGCAGAGACCAACATTACACAGCCCAGGTCTAATGTCTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR-3UTR CAA 90 bp | GTAATGTTGGTCTCTGCTTTTCTGACATCCCACCCTCTACCCTGCATGGCTGAGCAGGAAATACCCAAGTaGAGGACAAAAGACAGGACT | + |
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Preference number: 3 (lower is better) Translates to: VMLVSAFLTSHPLPCMAEQEIPK*RTKDRT Trigger: AGTCCTGTCTTTTGTCCTCAACTTGGGTATTTCCTG...CTCAGCCATGCAGGGTAGAGGGTGGGATGTCAGAAAAGCAGAGACCAACATTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR-3UTR CAA 90 bp | CCAAATACAATACATGCAGCGTCTTCTCCACCAGGGTCTTTTTCTTGTTTCTATCTGGGCTGTGTAATGTaGGTCTCTGCTTTTCTGACA | + |
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Preference number: 3 (lower is better) Translates to: PNTIHAASSPPGSFSCFYLGCVM*VSAFLT Trigger: TGTCAGAAAAGCAGAGACCAACATTACACAGCCCAG...ATAGAAACAAGAAAAAGACCCTGGTGGAGAAGACGCTGCATGTATTGTATTTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| CDS-3UTR CCA 90 bp | GATGCCAAGAGTGAGTCCTGGGAGAAAATGCAGAGTGTGACGAGGGCCTGGCAGTCTGGAGGCTTTCTCTaGTCACTGCTCCGGGTCGTG | + |
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Preference number: 4 (lower is better) Translates to: DAKSESWEKMQSVTRAWQSGGFL*SLLRVV Trigger: CACGACCCGGAGCAGTGACCAGAGAAAGCCTCCAGA...CTGCCAGGCCCTCGTCACACTCTGCATTTTCTCCCAGGACTCACTCTTGGCATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| CDS-3UTR GCA 90 bp | GAAAATGCAGAGTGTGACGAGGGCCTGGCAGGAAATACCCAAGTTGAGGACAAACCAGGACTCTGCCTCTaGACCAAAAGCCAGTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: ENAECDEGLAGNTQVEDKPGLCL*TKSQFL Trigger: GAGGAACTGGCTTTTGGTGCAGAGGCAGAGTCCTGG...TTTGTCCTCAACTTGGGTATTTCCTGCCAGGCCCTCGTCACACTCTGCATTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| 3UTR CAA 72 bp | TGGCTGAGGAAGCTACCTATTACTGCTAACTCGTCGTaGATTGAGCCCTACTGTGTGCTAGGCCTGGGATAC | + |
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Preference number: 4 (lower is better) Translates to: WLRKLPITANSS*IEPYCVLGLGY Trigger: GTATCCCAGGCCTAGCACACAGTAGGGCTCAATCAACGACGAGTTAGCAGTAATAGGTAGCTTCCTCAGCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| CDS-3UTR GCA 90 bp | CCAAATACAATACATGCAGCGTCTTCTCCACCAGGGTCTTTTTCTTGTTTCTATGGTCACCCAGGACTCTaGCTCTGCACCAAAAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: PNTIHAASSPPGSFSCFYGHPGL*LCTKSQ Trigger: CTGGCTTTTGGTGCAGAGGCAGAGTCCTGGGTGACC...ATAGAAACAAGAAAAAGACCCTGGTGGAGAAGACGCTGCATGTATTGTATTTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| CDS GCA 72 bp | ACTCTGGAGGCTTTCTCTGGTCACTGCTCCGGGTCGTaGCCTCTGTTGACTCGCCGCCTGTCTGCAGGTCCC | + |
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Preference number: 6 (lower is better) Translates to: TLEAFSGHCSGS*PLLTRRLSAGP Trigger: GGGACCTGCAGACAGGCGGCGAGTCAACAGAGGGCACGACCCGGAGCAGTGACCAGAGAAAGCCTCCAGAGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| CDS CCA 72 bp | CTGGTGGTTAGGGGAGCCTCATCTTCCTCTCGACTCTaGAGGCTTTCTCTGGTCACTGCTCCGGGTCGTGCC | + |
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Preference number: 6 (lower is better) Translates to: LVVRGASSSSRL*RLSLVTAPGRA Trigger: GGCACGACCCGGAGCAGTGACCAGAGAAAGCCTCCAGAGTCGAGAGGAAGATGAGGCTCCCCTAACCACCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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| CDS GCA 72 bp | GGGGATTCCCTTCAGGTTCACGGTCACCCAGGACTCTaGCTCTGCACCAAAAGCCAGTTCCTCTCTGTCTCC | + |
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Preference number: 6 (lower is better) Translates to: GDSLQVHGHPGL*LCTKSQFLSVS Trigger: GGAGACAGAGAGGAACTGGCTTTTGGTGCAGAGGCAGAGTCCTGGGTGACCGTGAACCTGAAGGGAATCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021242.5 |
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