Pregenerated sensors for TAC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000061762Ensembl transcript IDs: ENSMUST00000090679.9, ENSMUST00000184986.2, ENSMUST00000185187.8
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCCAGCAGCAGCTGCCTGCGCTGGCTCACAGAAGGGTCCTTTCTTTaGAGACTGCGTCACTGCCAAGCTTGGACAGCTCCTTCATCACTG | + |
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Preference number: 1 (lower is better) Translates to: SSSSCLRWLTEGSFL*RLRHCQAWTAPSSL Trigger: CAGTGATGAAGGAGCTGTCCAAGCTTGGCAGTGACGCAGTCTCCAAAGAAAGGACCCTTCTGTGAGCCAGCGCAGGCAGCTGCTGCTGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| 3UTR GCA 90 bp | GCAGCTGCCTGCGCTGGCTCACAGAAGGGTCCTTTCTTTGGAGACTaGGTCACTGCCAAGCTTGGACAGCTCCTTCATCACTGTGCTTTG | + |
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Preference number: 1 (lower is better) Translates to: AAACAGSQKGPFFGD*VTAKLGQLLHHCAL Trigger: CAAAGCACAGTGATGAAGGAGCTGTCCAAGCTTGGCAGTGACGCAGTCTCCAAAGAAAGGACCCTTCTGTGAGCCAGCGCAGGCAGCTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| 3UTR TCA 90 bp | AAGTCTCAGTACATTATCAGCATGAAAGCAGAACCAGGGGTAGCGTaGGAGAGACGCACAGGAGTCTCTGCTTCCAGCAGCAGCTGCCTG | + |
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Preference number: 1 (lower is better) Translates to: KSQYIISMKAEPGVA*ERRTGVSASSSSCL Trigger: CAGGCAGCTGCTGCTGGAAGCAGAGACTCCTGTGCGTCTCTCTCACGCTACCCCTGGTTCTGCTTTCATGCTGATAATGTACTGAGACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| 3UTR GCA 90 bp | CTGCGCTGGCTCACAGAAGGGTCCTTTCTTTGGAGACTGCGTCACTaGCAAGCTTGGACAGCTCCTTCATCACTGTGCTTTGCTGAAATT | + |
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Preference number: 1 (lower is better) Translates to: LRWLTEGSFLWRLRH*QAWTAPSSLCFAEI Trigger: AATTTCAGCAAAGCACAGTGATGAAGGAGCTGTCCAAGCTTGGCAGTGACGCAGTCTCCAAAGAAAGGACCCTTCTGTGAGCCAGCGCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| 3UTR GCA 90 bp | TGGAGACTGCGTCACTGCCAAGCTTGGACAGCTCCTTCATCACTGTaGTTTGCTGAAATTACAACTAATTTCTACTTCTGGGGAGGTCAC | + |
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Preference number: 1 (lower is better) Translates to: WRLRHCQAWTAPSSL*FAEITTNFYFWGGH Trigger: GTGACCTCCCCAGAAGTAGAAATTAGTTGTAATTTCAGCAAAGCACAGTGATGAAGGAGCTGTCCAAGCTTGGCAGTGACGCAGTCTCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| 3UTR CAA 90 bp | TTCCAGCAGCAGCTGCCTGCGCTGGCTCACAGAAGGGTCCTTTCTTaGGAGACTGCGTCACTGCCAAGCTTGGACAGCTCCTTCATCACT | + |
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Preference number: 2 (lower is better) Translates to: FQQQLPALAHRRVLS*ETASLPSLDSSFIT Trigger: AGTGATGAAGGAGCTGTCCAAGCTTGGCAGTGACGCAGTCTCCAAAGAAAGGACCCTTCTGTGAGCCAGCGCAGGCAGCTGCTGCTGGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| 3UTR-3UTR GCA 90 bp | GCTGGCTCACAGAAGGGTCCTTTCTTTGGAGACTGCGTCACTGCCAAGCTTGGATATTTTACCGTTCACTaGTCACTGACACAGATGAAG | + |
|
Preference number: 2 (lower is better) Translates to: AGSQKGPFFGDCVTAKLGYFTVH*SLTQMK Trigger: CTTCATCTGTGTCAGTGAGCAGTGAACGGTAAAATA...TCCAAGCTTGGCAGTGACGCAGTCTCCAAAGAAAGGACCCTTCTGTGAGCCAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| 3UTR-3UTR GCA 90 bp | CAAATACCGAAGTCTCAGTACATTATCAGCATGAAAGCAGAACCAGGGGTAGCGTATTTTACCGTTCACTaGTCACTGACACAGATGAAG | + |
|
Preference number: 2 (lower is better) Translates to: QIPKSQYIISMKAEPGVAYFTVH*SLTQMK Trigger: CTTCATCTGTGTCAGTGAGCAGTGAACGGTAAAATA...CGCTACCCCTGGTTCTGCTTTCATGCTGATAATGTACTGAGACTTCGGTATTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| 3UTR-3UTR GCA 90 bp | TTTGCTGAAATTACAACTAATTTCTACTTCTGGGGAGGTCACCACATTAGAATTTATTTTACCGTTCACTaGTCACTGACACAGATGAAG | + |
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Preference number: 2 (lower is better) Translates to: FAEITTNFYFWGGHHIRIYFTVH*SLTQMK Trigger: CTTCATCTGTGTCAGTGAGCAGTGAACGGTAAAATA...AATTCTAATGTGGTGACCTCCCCAGAAGTAGAAATTAGTTGTAATTTCAGCAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000090679.9 ENSMUST00000184986.2 ENSMUST00000185187.8 |
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| 3UTR GCA 72 bp | ACCAGGGGTAGCGTGAGAGAGACGCACAGGAGTCTCTaGTTCCAGCAGCAGCTGCCTGCGCTGGCTCACAGA | + |
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Preference number: 3 (lower is better) Translates to: TRGSVRETHRSL*FQQQLPALAHR Trigger: TCTGTGAGCCAGCGCAGGCAGCTGCTGCTGGAAGCAGAGACTCCTGTGCGTCTCTCTCACGCTACCCCTGGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| 3UTR GCA 72 bp | GAGAGACGCACAGGAGTCTCTGCTTCCAGCAGCAGCTaGCTGCGCTGGCTCACAGAAGGGTCCTTTCTTTGG | + |
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Preference number: 3 (lower is better) Translates to: ERRTGVSASSSS*LRWLTEGSFLW Trigger: CCAAAGAAAGGACCCTTCTGTGAGCCAGCGCAGGCAGCTGCTGCTGGAAGCAGAGACTCCTGTGCGTCTCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| 3UTR CCA 72 bp | AGCTGCCTGCGCTGGCTCACAGAAGGGTCCTTTCTTTaGAGACTGCGTCACTGCCAAGCTTGGACAGCTCCT | + |
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Preference number: 3 (lower is better) Translates to: SCLRWLTEGSFL*RLRHCQAWTAP Trigger: AGGAGCTGTCCAAGCTTGGCAGTGACGCAGTCTCCAAAGAAAGGACCCTTCTGTGAGCCAGCGCAGGCAGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| 3UTR GCA 72 bp | TGCGCTGGCTCACAGAAGGGTCCTTTCTTTGGAGACTaGGTCACTGCCAAGCTTGGACAGCTCCTTCATCAC | + |
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Preference number: 3 (lower is better) Translates to: CAGSQKGPFFGD*VTAKLGQLLHH Trigger: GTGATGAAGGAGCTGTCCAAGCTTGGCAGTGACGCAGTCTCCAAAGAAAGGACCCTTCTGTGAGCCAGCGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| 3UTR TCA 72 bp | TACATTATCAGCATGAAAGCAGAACCAGGGGTAGCGTaGGAGAGACGCACAGGAGTCTCTGCTTCCAGCAGC | + |
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Preference number: 3 (lower is better) Translates to: YIISMKAEPGVA*ERRTGVSASSS Trigger: GCTGCTGGAAGCAGAGACTCCTGTGCGTCTCTCTCACGCTACCCCTGGTTCTGCTTTCATGCTGATAATGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| 3UTR CAA 72 bp | CAGCTGCCTGCGCTGGCTCACAGAAGGGTCCTTTCTTaGGAGACTGCGTCACTGCCAAGCTTGGACAGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: QLPALAHRRVLS*ETASLPSLDSS Trigger: GGAGCTGTCCAAGCTTGGCAGTGACGCAGTCTCCAAAGAAAGGACCCTTCTGTGAGCCAGCGCAGGCAGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| CDS-3UTR TCA 90 bp | AGCAGAACCAGGGGTAGCGTGAGAGAGACGCACAGGAGTCTCTGCTTCCAGCAGCACTTGTTTTTCAACTaGGGAATCAGCATCCCGCTT | + |
|
Preference number: 4 (lower is better) Translates to: SRTRGSVRETHRSLCFQQHLFFN*GISIPL Trigger: AAGCGGGATGCTGATTCCTCAGTTGAAAAACAAGTG...CTGCTGGAAGCAGAGACTCCTGTGCGTCTCTCTCACGCTACCCCTGGTTCTGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| CDS-3UTR TCA 90 bp | GCCAAGCTTGGACAGCTCCTTCATCACTGTGCTTTGCTGAAATTACAACTAATTCCGGCATTGCCTCCTTaGTCTGGTCACTGTCGGACC | + |
|
Preference number: 4 (lower is better) Translates to: AKLGQLLHHCALLKLQLIPALPP*SGHCRT Trigger: GGTCCGACAGTGACCAGATCAAGGAGGCAATGCCGG...AATTAGTTGTAATTTCAGCAAAGCACAGTGATGAAGGAGCTGTCCAAGCTTGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000090679.9 ENSMUST00000184986.2 ENSMUST00000185187.8 |
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| CDS-3UTR GCA 90 bp | GCTGGCTCACAGAAGGGTCCTTTCTTTGGAGACTGCGTCACTGCCAAGCTTGGAAATCAGCATCCCGCTTaGCCATTAATCCAAAGAACT | + |
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Preference number: 4 (lower is better) Translates to: AGSQKGPFFGDCVTAKLGNQHPA*PLIQRT Trigger: AGTTCTTTGGATTAATGGGCAAGCGGGATGCTGATT...TCCAAGCTTGGCAGTGACGCAGTCTCCAAAGAAAGGACCCTTCTGTGAGCCAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| CDS-3UTR GCA 90 bp | GCTGCCTGCGCTGGCTCACAGAAGGGTCCTTTCTTTGGAGACTGCGTCACTGCCAATTTAAAGCTCTTTTaGCCATTAGTCCAACAAAGG | + |
|
Preference number: 4 (lower is better) Translates to: AACAGSQKGPFFGDCVTANLKLF*PLVQQR Trigger: CCTTTGTTGGACTAATGGGCAAAAGAGCTTTAAATT...GGCAGTGACGCAGTCTCCAAAGAAAGGACCCTTCTGTGAGCCAGCGCAGGCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185187.8 |
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| CDS-3UTR CCA 90 bp | CAAATACCGAAGTCTCAGTACATTATCAGCATGAAAGCAGAACCAGGGGTAGCGAGAACTGCTGAGGCTTaGGTCTTCGGGCGATTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: QIPKSQYIISMKAEPGVARTAEA*VFGRFS Trigger: AGAGAATCGCCCGAAGACCCAAGCCTCAGCAGTTCT...CGCTACCCCTGGTTCTGCTTTCATGCTGATAATGTACTGAGACTTCGGTATTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| CDS-3UTR TCA 90 bp | CAACTAATTTCTACTTCTGGGGAGGTCACCACATTAGAATTACAAGGCTTATTGCCGGCATTGCCTCCTTaGTCTGGTCACTGTCGGACC | + |
|
Preference number: 4 (lower is better) Translates to: QLISTSGEVTTLELQGLLPALPP*SGHCRT Trigger: GGTCCGACAGTGACCAGATCAAGGAGGCAATGCCGG...CAATAAGCCTTGTAATTCTAATGTGGTGACCTCCCCAGAAGTAGAAATTAGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090679.9 ENSMUST00000184986.2 ENSMUST00000185187.8 |
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| CDS-3UTR GCA 90 bp | CAAATACCGAAGTCTCAGTACATTATCAGCATGAAAGCAGAACCAGGGGTAGCGATTCTCTGCAGAAGATaGTCAAAGGGCTCCGGCATT | + |
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Preference number: 4 (lower is better) Translates to: QIPKSQYIISMKAEPGVAILCRR*SKGSGI Trigger: AATGCCGGAGCCCTTTGAGCATCTTCTGCAGAGAAT...CGCTACCCCTGGTTCTGCTTTCATGCTGATAATGTACTGAGACTTCGGTATTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| CDS-3UTR TCA 90 bp | TTTGCTGAAATTACAACTAATTTCTACTTCTGGGGAGGTCACCACATTAGAATTCCGGCATTGCCTCCTTaGTCTGGTCACTGTCGGACC | + |
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Preference number: 4 (lower is better) Translates to: FAEITTNFYFWGGHHIRIPALPP*SGHCRT Trigger: GGTCCGACAGTGACCAGATCAAGGAGGCAATGCCGG...AATTCTAATGTGGTGACCTCCCCAGAAGTAGAAATTAGTTGTAATTTCAGCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090679.9 ENSMUST00000184986.2 ENSMUST00000185187.8 |
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| CDS-3UTR GCA 90 bp | AATTTCTACTTCTGGGGAGGTCACCACATTAGAATTACAAGGCTTATTGGCACACTTCGGGCGATTCTCTaGAGAAGATGCTCAAAGGGC | + |
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Preference number: 4 (lower is better) Translates to: NFYFWGGHHIRITRLIGTLRAIL*RRCSKG Trigger: GCCCTTTGAGCATCTTCTGCAGAGAATCGCCCGAAG...TGTGCCAATAAGCCTTGTAATTCTAATGTGGTGACCTCCCCAGAAGTAGAAATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090679.9 ENSMUST00000184986.2 ENSMUST00000185187.8 |
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| CDS-3UTR GCA 90 bp | GCTTTGCTGAAATTACAACTAATTTCTACTTCTGGGGAGGTCACCACATTAGAACTTCGGGCGATTCTCTaGAGAAGATGCTCAAAGGGC | + |
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Preference number: 4 (lower is better) Translates to: ALLKLQLISTSGEVTTLELRAIL*RRCSKG Trigger: GCCCTTTGAGCATCTTCTGCAGAGAATCGCCCGAAG...TTCTAATGTGGTGACCTCCCCAGAAGTAGAAATTAGTTGTAATTTCAGCAAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090679.9 ENSMUST00000184986.2 ENSMUST00000185187.8 |
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| 3UTR CAA 72 bp | ACTGCCAAGCTTGGACAGCTCCTTCATCACTGTGCTTaGCTGAAATTACAACTAATTTCTACTTCTGGGGAG | + |
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Preference number: 4 (lower is better) Translates to: TAKLGQLLHHCA*LKLQLISTSGE Trigger: CTCCCCAGAAGTAGAAATTAGTTGTAATTTCAGCAAAGCACAGTGATGAAGGAGCTGTCCAAGCTTGGCAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090679.9 ENSMUST00000184986.2 ENSMUST00000185187.8 |
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| CDS-3UTR CCA 90 bp | GCTGAAATTACAACTAATTTCTACTTCTGGGGAGGTCACCACATTAGAATTACAAGAACTGCTGAGGCTTaGGTCTTCGGGCGATTCTCT | + |
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Preference number: 4 (lower is better) Translates to: AEITTNFYFWGGHHIRITRTAEA*VFGRFS Trigger: AGAGAATCGCCCGAAGACCCAAGCCTCAGCAGTTCT...TGTAATTCTAATGTGGTGACCTCCCCAGAAGTAGAAATTAGTTGTAATTTCAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090679.9 ENSMUST00000184986.2 ENSMUST00000185187.8 |
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| CDS-3UTR GCA 90 bp | GCTTTGCTGAAATTACAACTAATTTCTACTTCTGGGGAGGTCACCACATTAGAAATTCTCTGCAGAAGATaGTCAAAGGGCTCCGGCATT | + |
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Preference number: 4 (lower is better) Translates to: ALLKLQLISTSGEVTTLEILCRR*SKGSGI Trigger: AATGCCGGAGCCCTTTGAGCATCTTCTGCAGAGAAT...TTCTAATGTGGTGACCTCCCCAGAAGTAGAAATTAGTTGTAATTTCAGCAAAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090679.9 ENSMUST00000184986.2 ENSMUST00000185187.8 |
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| CDS-3UTR GCA 90 bp | CAACTAATTTCTACTTCTGGGGAGGTCACCACATTAGAATTACAAGGCTTATTGGTCCAGCATCCCGCTTaGCCATTAATCCAAAGAACT | + |
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Preference number: 4 (lower is better) Translates to: QLISTSGEVTTLELQGLLVQHPA*PLIQRT Trigger: AGTTCTTTGGATTAATGGGCAAGCGGGATGCTGGAC...CAATAAGCCTTGTAATTCTAATGTGGTGACCTCCCCAGAAGTAGAAATTAGTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184986.2 |
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| CDS-3UTR TCA 90 bp | CAACTAATTTCTACTTCTGGGGAGGTCACCACATTAGAATTACAAGGCTTATTGCACTTGTTTTTCAACTaGGGAATCAGCATCCCGCTT | + |
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Preference number: 4 (lower is better) Translates to: QLISTSGEVTTLELQGLLHLFFN*GISIPL Trigger: AAGCGGGATGCTGATTCCTCAGTTGAAAAACAAGTG...CAATAAGCCTTGTAATTCTAATGTGGTGACCTCCCCAGAAGTAGAAATTAGTTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| CDS-3UTR TCA 90 bp | CAACTAATTTCTACTTCTGGGGAGGTCACCACATTAGAATTACAAGGCTTATTGGTTTTATGCCTTTTGTaGGAGATCTGGCCATGTCCA | + |
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Preference number: 4 (lower is better) Translates to: QLISTSGEVTTLELQGLLVLCLL*EIWPCP Trigger: TGGACATGGCCAGATCTCTCACAAAAGGCATAAAAC...CAATAAGCCTTGTAATTCTAATGTGGTGACCTCCCCAGAAGTAGAAATTAGTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000184986.2 ENSMUST00000185187.8 |
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| CDS-3UTR GCA 90 bp | GCTGAAATTACAACTAATTTCTACTTCTGGGGAGGTCACCACATTAGAATTACAATTCTCTGCAGAAGATaGTCAAAGGGCTCCGGCATT | + |
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Preference number: 4 (lower is better) Translates to: AEITTNFYFWGGHHIRITILCRR*SKGSGI Trigger: AATGCCGGAGCCCTTTGAGCATCTTCTGCAGAGAAT...TGTAATTCTAATGTGGTGACCTCCCCAGAAGTAGAAATTAGTTGTAATTTCAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090679.9 ENSMUST00000184986.2 ENSMUST00000185187.8 |
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| CDS-3UTR TCA 90 bp | TTTGCTGAAATTACAACTAATTTCTACTTCTGGGGAGGTCACCACATTAGAATTGTTTTATGCCTTTTGTaGGAGATCTGGCCATGTCCA | + |
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Preference number: 4 (lower is better) Translates to: FAEITTNFYFWGGHHIRIVLCLL*EIWPCP Trigger: TGGACATGGCCAGATCTCTCACAAAAGGCATAAAAC...AATTCTAATGTGGTGACCTCCCCAGAAGTAGAAATTAGTTGTAATTTCAGCAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000184986.2 ENSMUST00000185187.8 |
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| CDS-3UTR GCA 90 bp | GCTGAAATTACAACTAATTTCTACTTCTGGGGAGGTCACCACATTAGAATTACAAATCAGCATCCCGCTTaGCCATTAATCCAAAGAACT | + |
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Preference number: 4 (lower is better) Translates to: AEITTNFYFWGGHHIRITNQHPA*PLIQRT Trigger: AGTTCTTTGGATTAATGGGCAAGCGGGATGCTGATT...TGTAATTCTAATGTGGTGACCTCCCCAGAAGTAGAAATTAGTTGTAATTTCAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| CDS-3UTR CCA 90 bp | CAACTAATTTCTACTTCTGGGGAGGTCACCACATTAGAATTACAAGGCTTATTGAATTTAGATCATCGTTaGCATCGATTTCCTCTGCAA | + |
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Preference number: 4 (lower is better) Translates to: QLISTSGEVTTLELQGLLNLDHR*HRFPLQ Trigger: TTGCAGAGGAAATCGATGCCAACGATGATCTAAATT...CAATAAGCCTTGTAATTCTAATGTGGTGACCTCCCCAGAAGTAGAAATTAGTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090679.9 ENSMUST00000184986.2 ENSMUST00000185187.8 |
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| CDS-3UTR CCA 90 bp | GCTGAAATTACAACTAATTTCTACTTCTGGGGAGGTCACCACATTAGAATTACAAATTTAGATCATCGTTaGCATCGATTTCCTCTGCAA | + |
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Preference number: 4 (lower is better) Translates to: AEITTNFYFWGGHHIRITNLDHR*HRFPLQ Trigger: TTGCAGAGGAAATCGATGCCAACGATGATCTAAATT...TGTAATTCTAATGTGGTGACCTCCCCAGAAGTAGAAATTAGTTGTAATTTCAGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090679.9 ENSMUST00000184986.2 ENSMUST00000185187.8 |
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| CDS-3UTR CCA 90 bp | TTTGCTGAAATTACAACTAATTTCTACTTCTGGGGAGGTCACCACATTAGAATTAATTTAGATCATCGTTaGCATCGATTTCCTCTGCAA | + |
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Preference number: 4 (lower is better) Translates to: FAEITTNFYFWGGHHIRINLDHR*HRFPLQ Trigger: TTGCAGAGGAAATCGATGCCAACGATGATCTAAATT...AATTCTAATGTGGTGACCTCCCCAGAAGTAGAAATTAGTTGTAATTTCAGCAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090679.9 ENSMUST00000184986.2 ENSMUST00000185187.8 |
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| CDS-3UTR GCA 90 bp | TTTGCTGAAATTACAACTAATTTCTACTTCTGGGGAGGTCACCACATTAGAATTAATTTAAAGCTCTTTTaGCCATTAGTCCAACAAAGG | + |
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Preference number: 4 (lower is better) Translates to: FAEITTNFYFWGGHHIRINLKLF*PLVQQR Trigger: CCTTTGTTGGACTAATGGGCAAAAGAGCTTTAAATT...AATTCTAATGTGGTGACCTCCCCAGAAGTAGAAATTAGTTGTAATTTCAGCAAA 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000184986.2 ENSMUST00000185187.8 |
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| CDS CCA 90 bp | GTCCAGCATCCCGCTTGCCCATTAATCCAAAGAACTGCTGAGGCTTaGGTCTTCGGGCGATTCTCTGCAGAAGATGCTCAAAGGGCTCCG | + |
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Preference number: 5 (lower is better) Translates to: VQHPACPLIQRTAEA*VFGRFSAEDAQRAP Trigger: CGGAGCCCTTTGAGCATCTTCTGCAGAGAATCGCCCGAAGACCCAAGCCTCAGCAGTTCTTTGGATTAATGGGCAAGCGGGATGCTGGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184986.2 |
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| CDS-3UTR CAA 90 bp | CTGCCTGCGCTGGCTCACAGAAGGGTCCTTTCTTTGGAGACTGCGTCACTGCCAGAATCAGCATCCCGCTaGCCCATTAATCCAAAGAAC | + |
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Preference number: 5 (lower is better) Translates to: LPALAHRRVLSLETASLPESASR*PINPKN Trigger: GTTCTTTGGATTAATGGGCAAGCGGGATGCTGATTC...TGGCAGTGACGCAGTCTCCAAAGAAAGGACCCTTCTGTGAGCCAGCGCAGGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| CDS CCA 90 bp | AATCAGCATCCCGCTTGCCCATTAATCCAAAGAACTGCTGAGGCTTaGGTCTTCGGGCGATTCTCTGCAGAAGATGCTCAAAGGGCTCCG | + |
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Preference number: 5 (lower is better) Translates to: NQHPACPLIQRTAEA*VFGRFSAEDAQRAP Trigger: CGGAGCCCTTTGAGCATCTTCTGCAGAGAATCGCCCGAAGACCCAAGCCTCAGCAGTTCTTTGGATTAATGGGCAAGCGGGATGCTGATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| CDS CCA 90 bp | TCTGGTCACTGTCGGACCAGTCGGACCAATAATTTAGATCATCGTTaGCATCGATTTCCTCTGCAAACAGTTGAGTGGAAACGAGAAAAA | + |
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Preference number: 5 (lower is better) Translates to: SGHCRTSRTNNLDHR*HRFPLQTVEWKREK Trigger: TTTTTCTCGTTTCCACTCAACTGTTTGCAGAGGAAATCGATGCCAACGATGATCTAAATTATTGGTCCGACTGGTCCGACAGTGACCAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000090679.9 ENSMUST00000184986.2 ENSMUST00000185187.8 |
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| CDS-3UTR CAA 90 bp | ATTACAACTAATTTCTACTTCTGGGGAGGTCACCACATTAGAATTACAAGGCTTTGTCCAGCATCCCGCTaGCCCATTAATCCAAAGAAC | + |
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Preference number: 5 (lower is better) Translates to: ITTNFYFWGGHHIRITRLCPASR*PINPKN Trigger: GTTCTTTGGATTAATGGGCAAGCGGGATGCTGGACA...AAGCCTTGTAATTCTAATGTGGTGACCTCCCCAGAAGTAGAAATTAGTTGTAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184986.2 |
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| CDS-3UTR CAA 90 bp | ATTACAACTAATTTCTACTTCTGGGGAGGTCACCACATTAGAATTACAAGGCTTGAATCAGCATCCCGCTaGCCCATTAATCCAAAGAAC | + |
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Preference number: 5 (lower is better) Translates to: ITTNFYFWGGHHIRITRLESASR*PINPKN Trigger: GTTCTTTGGATTAATGGGCAAGCGGGATGCTGATTC...AAGCCTTGTAATTCTAATGTGGTGACCTCCCCAGAAGTAGAAATTAGTTGTAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| CDS-3UTR CAA 90 bp | GCTTTGCTGAAATTACAACTAATTTCTACTTCTGGGGAGGTCACCACATTAGAAGAATTTAAAGCTCTTTaGCCCATTAGTCCAACAAAG | + |
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Preference number: 5 (lower is better) Translates to: ALLKLQLISTSGEVTTLEEFKAL*PISPTK Trigger: CTTTGTTGGACTAATGGGCAAAAGAGCTTTAAATTC...TTCTAATGTGGTGACCTCCCCAGAAGTAGAAATTAGTTGTAATTTCAGCAAAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000184986.2 ENSMUST00000185187.8 |
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| CDS-3UTR CAA 90 bp | TTTGCTGAAATTACAACTAATTTCTACTTCTGGGGAGGTCACCACATTAGAATTGAATTTAAAGCTCTTTaGCCCATTAGTCCAACAAAG | + |
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Preference number: 5 (lower is better) Translates to: FAEITTNFYFWGGHHIRIEFKAL*PISPTK Trigger: CTTTGTTGGACTAATGGGCAAAAGAGCTTTAAATTC...AATTCTAATGTGGTGACCTCCCCAGAAGTAGAAATTAGTTGTAATTTCAGCAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000184986.2 ENSMUST00000185187.8 |
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| CDS CCA 72 bp | CCCGCTTGCCCATTAATCCAAAGAACTGCTGAGGCTTaGGTCTTCGGGCGATTCTCTGCAGAAGATGCTCAA | + |
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Preference number: 6 (lower is better) Translates to: PACPLIQRTAEA*VFGRFSAEDAQ Trigger: TTGAGCATCTTCTGCAGAGAATCGCCCGAAGACCCAAGCCTCAGCAGTTCTTTGGATTAATGGGCAAGCGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000090679.9 ENSMUST00000184986.2 ENSMUST00000185187.8 |
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| CDS GCA 72 bp | CCACTTGTTTTTCAACTGAGGAATCAGCATCCCGCTTaGCCATTAATCCAAAGAACTGCTGAGGCTTGGGTC | + |
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Preference number: 6 (lower is better) Translates to: PLVFQLRNQHPA*PLIQRTAEAWV Trigger: GACCCAAGCCTCAGCAGTTCTTTGGATTAATGGGCAAGCGGGATGCTGATTCCTCAGTTGAAAAACAAGTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000090679.9 ENSMUST00000185187.8 |
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| CDS CCA 72 bp | TGTCGGACCAGTCGGACCAATAATTTAGATCATCGTTaGCATCGATTTCCTCTGCAAACAGTTGAGTGGAAA | + |
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Preference number: 6 (lower is better) Translates to: CRTSRTNNLDHR*HRFPLQTVEWK Trigger: TTTCCACTCAACTGTTTGCAGAGGAAATCGATGCCAACGATGATCTAAATTATTGGTCCGACTGGTCCGACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000090679.9 ENSMUST00000184986.2 ENSMUST00000185187.8 |
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