Pregenerated sensors for T (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062327Ensembl transcript IDs: ENSMUST00000074667.9, ENSMUST00000136922.8, ENSMUST00000177118.2
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TCAAAGTTAACTACTCTAAGGCAACAAGGGAGGACATTAGAGGTGTACCTTGTGCCGTCTCTCTGTCCTTaGCTTCATAATGTAGGACAC | + |
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Preference number: 2 (lower is better) Translates to: SKLTTLRQQGRTLEVYLVPSLCP*LHNVGH Trigger: GTGTCCTACATTATGAAGCCAAGGACAGAGAGACGG...CACAAGGTACACCTCTAATGTCCTCCCTTGTTGCCTTAGAGTAGTTAACTTTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| 3UTR TCA 72 bp | CCAAGAGCCTGCCACTTTGAGCCTAGAAGATCCAGTTaGCACCGGTTGTTACAAGTCTCAGCACATGGAGGA | + |
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Preference number: 3 (lower is better) Translates to: PRACHFEPRRSS*HRLLQVSAHGG Trigger: TCCTCCATGTGCTGAGACTTGTAACAACCGGTGTCAACTGGATCTTCTAGGCTCAAAGTGGCAGGCTCTTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR TCA 90 bp | CTCAAAGTTAACTACTCTAAGGCAACAAGGGAGGACATTAGAGGTGTACCTTGTACGCAGCTGGGCGCCTaGGGCTCTGGTTTGCCCCCA | + |
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Preference number: 4 (lower is better) Translates to: LKVNYSKATREDIRGVPCTQLGA*GSGLPP Trigger: TGGGGGCAAACCAGAGCCTCAGGCGCCCAGCTGCGT...ACAAGGTACACCTCTAATGTCCTCCCTTGTTGCCTTAGAGTAGTTAACTTTGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR TCA 90 bp | TTAACTACTCTAAGGCAACAAGGGAGGACATTAGAGGTGTACCTTGTGTCTCACAGCGAGCCTCCAAACTaGGGGTGGGAGCTGGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: LTTLRQQGRTLEVYLVSHSEPPN*GWELAG Trigger: GCCTGCCAGCTCCCACCCTCAGTTTGGAGGCTCGCT...GTGAGACACAAGGTACACCTCTAATGTCCTCCCTTGTTGCCTTAGAGTAGTTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR GCA 90 bp | AGTAGGACAGGGGGTGGACGAATTCCAGGATTTCAAAGTCACATATATGTTGTATTCTCGCTGCCCGCCTaGAGCTCGCTCTCCACGGCG | + |
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Preference number: 4 (lower is better) Translates to: SRTGGGRIPGFQSHIYVVFSLPA*SSLSTA Trigger: CGCCGTGGAGAGCGAGCTGCAGGCGGGCAGCGAGAA...TACAACATATATGTGACTTTGAAATCCTGGAATTCGTCCACCCCCTGTCCTACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR GCA 90 bp | TTTCTGTCCTCAAAGTTAACTACTCTAAGGCAACAAGGGAGGACATTAGAGGTGGGTCTCCCTTCTCGCTaGCCGCCTGCAGCTCGCTCT | + |
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Preference number: 4 (lower is better) Translates to: FLSSKLTTLRQQGRTLEVGLPSR*PPAARS Trigger: AGAGCGAGCTGCAGGCGGGCAGCGAGAAGGGAGACC...CACCTCTAATGTCCTCCCTTGTTGCCTTAGAGTAGTTAACTTTGAGGACAGAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR GCA 90 bp | AGTAGGACAGGGGGTGGACGAATTCCAGGATTTCAAAGTCACATATATGTTGTACAGGCGGGCAGAGGGTaGCAGCACCAGGAACAAGCC | + |
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Preference number: 4 (lower is better) Translates to: SRTGGGRIPGFQSHIYVVQAGRG*QHQEQA Trigger: GGCTTGTTCCTGGTGCTGGCACCCTCTGCCCGCCTG...TACAACATATATGTGACTTTGAAATCCTGGAATTCGTCCACCCCCTGTCCTACT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR CCA 90 bp | TCTGTCCTCAAAGTTAACTACTCTAAGGCAACAAGGGAGGACATTAGAGGTGTAGAATACCCCGGCTGCTaGCAGTCCCCCGGTTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: SVLKVNYSKATREDIRGVEYPGC*QSPGSS Trigger: GGAGGAACCGGGGGACTGCCAGCAGCCGGGGTATTC...TACACCTCTAATGTCCTCCCTTGTTGCCTTAGAGTAGTTAACTTTGAGGACAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR CCA 90 bp | TCAAAGTTAACTACTCTAAGGCAACAAGGGAGGACATTAGAGGTGTACCTTGTGGAGCTCCCAGCCCGTTaGACACCCCAGCTGTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: SKLTTLRQQGRTLEVYLVELPAR*TPQLSG Trigger: CCCAGACAGCTGGGGTGTCCAACGGGCTGGGAGCTC...CACAAGGTACACCTCTAATGTCCTCCCTTGTTGCCTTAGAGTAGTTAACTTTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR GCA 90 bp | AAGATCCAGTTGACACCGGTTGTTACAAGTCTCAGCACATGGAGGAAAGTTCAACTGGTGATCATGCGTTaGGGGCCCCCAACTCTCACG | + |
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Preference number: 4 (lower is better) Translates to: KIQLTPVVTSLSTWRKVQLVIMR*GPPTLT Trigger: CGTGAGAGTTGGGGGCCCGCAACGCATGATCACCAG...TTGAACTTTCCTCCATGTGCTGAGACTTGTAACAACCGGTGTCAACTGGATCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR GCA 90 bp | TTAACTACTCTAAGGCAACAAGGGAGGACATTAGAGGTGTACCTTGTGTCTCACGACTCACAGGCAGCATaGTGGTGTGGCCAGGCACTC | + |
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Preference number: 4 (lower is better) Translates to: LTTLRQQGRTLEVYLVSHDSQAA*WCGQAL Trigger: GAGTGCCTGGCCACACCAGCATGCTGCCTGTGAGTC...GTGAGACACAAGGTACACCTCTAATGTCCTCCCTTGTTGCCTTAGAGTAGTTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR CCA 90 bp | TCAAAGTTAACTACTCTAAGGCAACAAGGGAGGACATTAGAGGTGTACCTTGTGGCAGTTCGCGTTCGGTaGGGTCTCCCTTCTCGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: SKLTTLRQQGRTLEVYLVAVRVR*GLPSRC Trigger: GCAGCGAGAAGGGAGACCCCACCGAACGCGAACTGC...CACAAGGTACACCTCTAATGTCCTCCCTTGTTGCCTTAGAGTAGTTAACTTTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR CCA 90 bp | AAGATCCAGTTGACACCGGTTGTTACAAGTCTCAGCACATGGAGGAAAGTTCAAGGATGTAGACGCAGCTaGGCGCCTGAGGCTCTGGTT | + |
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Preference number: 4 (lower is better) Translates to: KIQLTPVVTSLSTWRKVQGCRRS*APEALV Trigger: AACCAGAGCCTCAGGCGCCCAGCTGCGTCTACATCC...TTGAACTTTCCTCCATGTGCTGAGACTTGTAACAACCGGTGTCAACTGGATCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR TCA 90 bp | TTTCTGTCCTCAAAGTTAACTACTCTAAGGCAACAAGGGAGGACATTAGAGGTGGAGCCTCGAAAGAACTaGGCTCCCAGCCCGTTGGAC | + |
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Preference number: 4 (lower is better) Translates to: FLSSKLTTLRQQGRTLEVEPRKN*APSPLD Trigger: GTCCAACGGGCTGGGAGCTCAGTTCTTTCGAGGCTC...CACCTCTAATGTCCTCCCTTGTTGCCTTAGAGTAGTTAACTTTGAGGACAGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR CCA 90 bp | AGTAGGACAGGGGGTGGACGAATTCCAGGATTTCAAAGTCACATATATGTTGTAGGCGCCTTCATCCAGTaGGCCCCAAAATTGGGCGAG | + |
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Preference number: 4 (lower is better) Translates to: SRTGGGRIPGFQSHIYVVGAFIQ*APKLGE Trigger: CTCGCCCAATTTTGGGGCCCACTGGATGAAGGCGCC...TACAACATATATGTGACTTTGAAATCCTGGAATTCGTCCACCCCCTGTCCTACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR CCA 90 bp | TTTCTGTCCTCAAAGTTAACTACTCTAAGGCAACAAGGGAGGACATTAGAGGTGGATGAGCATAGGGGCTaGGGTAGGGCGATGACCGGT | + |
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Preference number: 4 (lower is better) Translates to: FLSSKLTTLRQQGRTLEVDEHRG*GRAMTG Trigger: ACCGGTCATCGCCCTACCCCAGCCCCTATGCTCATC...CACCTCTAATGTCCTCCCTTGTTGCCTTAGAGTAGTTAACTTTGAGGACAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR CCA 90 bp | TCAAAGTTAACTACTCTAAGGCAACAAGGGAGGACATTAGAGGTGTACCTTGTGGACACCCCAGCTGTCTaGGAGCCTGGGGTGATGGTA | + |
|
Preference number: 4 (lower is better) Translates to: SKLTTLRQQGRTLEVYLVDTPAV*EPGVMV Trigger: TACCATCACCCCAGGCTCCCAGACAGCTGGGGTGTC...CACAAGGTACACCTCTAATGTCCTCCCTTGTTGCCTTAGAGTAGTTAACTTTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR CCA 90 bp | TTAACTACTCTAAGGCAACAAGGGAGGACATTAGAGGTGTACCTTGTGTCTCACAGTGGGCCCCAAAATTaGGCGAGTCTGGGTGGATGT | + |
|
Preference number: 4 (lower is better) Translates to: LTTLRQQGRTLEVYLVSHSGPQN*ASLGGC Trigger: ACATCCACCCAGACTCGCCCAATTTTGGGGCCCACT...GTGAGACACAAGGTACACCTCTAATGTCCTCCCTTGTTGCCTTAGAGTAGTTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR TCA 90 bp | AAGATCCAGTTGACACCGGTTGTTACAAGTCTCAGCACATGGAGGAAAGTTCAAATTGGGGTCCAGGCCTaGCACATTTACCTTCAGCAC | + |
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Preference number: 4 (lower is better) Translates to: KIQLTPVVTSLSTWRKVQIGVQA*HIYLQH Trigger: GTGCTGAAGGTAAATGTGTCAGGCCTGGACCCCAAT...TTGAACTTTCCTCCATGTGCTGAGACTTGTAACAACCGGTGTCAACTGGATCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR TCA 90 bp | TTTGGCTACTTTGTCAACAGAAAAGTATCCATACAGTTGACTTCCCAACACAAAGAAAGCAGTGGCTGGTaGTCATGCGTTGCGGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: FGYFVNRKVSIQLTSQHKESSGW*SCVAGP Trigger: GGGGCCCGCAACGCATGATCACCAGCCACTGCTTTC...TTTGTGTTGGGAAGTCAACTGTATGGATACTTTTCTGTTGACAAAGTAGCCAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR GCA 90 bp | TTTGGCTACTTTGTCAACAGAAAAGTATCCATACAGTTGACTTCCCAACACAAACCTGAGGCTCTGGTTTaGCCCCAGGTACCCACTCCC | + |
|
Preference number: 4 (lower is better) Translates to: FGYFVNRKVSIQLTSQHKPEALV*PQVPTP Trigger: GGGAGTGGGTACCTGGGGGCAAACCAGAGCCTCAGG...TTTGTGTTGGGAAGTCAACTGTATGGATACTTTTCTGTTGACAAAGTAGCCAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR CCA 90 bp | AGTAGGACAGGGGGTGGACGAATTCCAGGATTTCAAAGTCACATATATGTTGTAGTCTCGGGAAAGCAGTaGCTGGTGATCATGCGTTGC | + |
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Preference number: 4 (lower is better) Translates to: SRTGGGRIPGFQSHIYVVVSGKQ*LVIMRC Trigger: GCAACGCATGATCACCAGCCACTGCTTTCCCGAGAC...TACAACATATATGTGACTTTGAAATCCTGGAATTCGTCCACCCCCTGTCCTACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR CCA 90 bp | TCAAAGTTAACTACTCTAAGGCAACAAGGGAGGACATTAGAGGTGTACCTTGTGGCTAGAGCCAGTAGGTaGGCTGGCGTTATGACTCAC | + |
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Preference number: 4 (lower is better) Translates to: SKLTTLRQQGRTLEVYLVARASR*AGVMTH Trigger: GTGAGTCATAACGCCAGCCCACCTACTGGCTCTAGC...CACAAGGTACACCTCTAATGTCCTCCCTTGTTGCCTTAGAGTAGTTAACTTTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR CCA 90 bp | CTCAAAGTTAACTACTCTAAGGCAACAAGGGAGGACATTAGAGGTGTACCTTGTAGCTGTCTGGGAGCCTaGGGTGATGGTACCATTGCT | + |
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Preference number: 4 (lower is better) Translates to: LKVNYSKATREDIRGVPCSCLGA*GDGTIA Trigger: AGCAATGGTACCATCACCCCAGGCTCCCAGACAGCT...ACAAGGTACACCTCTAATGTCCTCCCTTGTTGCCTTAGAGTAGTTAACTTTGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR TCA 90 bp | TTTGGCTACTTTGTCAACAGAAAAGTATCCATACAGTTGACTTCCCAACACAAAGGTGGGCTGGCGTTATaGCTCACAGGCAGCATGCTG | + |
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Preference number: 4 (lower is better) Translates to: FGYFVNRKVSIQLTSQHKGGLAL*LTGSML Trigger: CAGCATGCTGCCTGTGAGTCATAACGCCAGCCCACC...TTTGTGTTGGGAAGTCAACTGTATGGATACTTTTCTGTTGACAAAGTAGCCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR CCA 90 bp | TCAAAGTTAACTACTCTAAGGCAACAAGGGAGGACATTAGAGGTGTACCTTGTGGTCACAGCTATGAACTaGGTCTCGGGAAAGCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: SKLTTLRQQGRTLEVYLVVTAMN*VSGKQW Trigger: CCACTGCTTTCCCGAGACCCAGTTCATAGCTGTGAC...CACAAGGTACACCTCTAATGTCCTCCCTTGTTGCCTTAGAGTAGTTAACTTTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR CCA 90 bp | TTTGGCTACTTTGTCAACAGAAAAGTATCCATACAGTTGACTTCCCAACACAAAACAAGCCACCCCCATTaGGAATACCCCGGCTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: FGYFVNRKVSIQLTSQHKTSHPH*EYPGCW Trigger: CCAGCAGCCGGGGTATTCCCAATGGGGGTGGCTTGT...TTTGTGTTGGGAAGTCAACTGTATGGATACTTTTCTGTTGACAAAGTAGCCAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR CCA 90 bp | TTTGGCTACTTTGTCAACAGAAAAGTATCCATACAGTTGACTTCCCAACACAAATCTCACAGCCGTGTGTaGAGGGGAGAGAGAGCGAGC | + |
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Preference number: 4 (lower is better) Translates to: FGYFVNRKVSIQLTSQHKSHSRV*RGERAS Trigger: GCTCGCTCTCTCTCCCCTCCACACACGGCTGTGAGA...TTTGTGTTGGGAAGTCAACTGTATGGATACTTTTCTGTTGACAAAGTAGCCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR CCA 90 bp | TTTGGCTACTTTGTCAACAGAAAAGTATCCATACAGTTGACTTCCCAACACAAATCACAGGCAGCATGCTaGTGTGGCCAGGCACTCCGA | + |
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Preference number: 4 (lower is better) Translates to: FGYFVNRKVSIQLTSQHKSQAAC*CGQALR Trigger: TCGGAGTGCCTGGCCACACCAGCATGCTGCCTGTGA...TTTGTGTTGGGAAGTCAACTGTATGGATACTTTTCTGTTGACAAAGTAGCCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR CCA 90 bp | AGTAGGACAGGGGGTGGACGAATTCCAGGATTTCAAAGTCACATATATGTTGTACATGGGACTGCAGCATaGACAGACAAGCAGATGAAT | + |
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Preference number: 4 (lower is better) Translates to: SRTGGGRIPGFQSHIYVVHGTAA*TDKQMN Trigger: ATTCATCTGCTTGTCTGTCCATGCTGCAGTCCCATG...TACAACATATATGTGACTTTGAAATCCTGGAATTCGTCCACCCCCTGTCCTACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR CCA 90 bp | CTCAAAGTTAACTACTCTAAGGCAACAAGGGAGGACATTAGAGGTGTACCTTGTCTAGACCAGTTATCATaGGACTGCAGCATGGACAGA | + |
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Preference number: 4 (lower is better) Translates to: LKVNYSKATREDIRGVPCLDQLS*DCSMDR Trigger: TCTGTCCATGCTGCAGTCCCATGATAACTGGTCTAG...ACAAGGTACACCTCTAATGTCCTCCCTTGTTGCCTTAGAGTAGTTAACTTTGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR TCA 90 bp | TTTCTGTCCTCAAAGTTAACTACTCTAAGGCAACAAGGGAGGACATTAGAGGTGCCAACTCTCACGATGTaGATCCGAGGTTCATACTTA | + |
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Preference number: 4 (lower is better) Translates to: FLSSKLTTLRQQGRTLEVPTLTM*IRGSYL Trigger: TAAGTATGAACCTCGGATTCACATCGTGAGAGTTGG...CACCTCTAATGTCCTCCCTTGTTGCCTTAGAGTAGTTAACTTTGAGGACAGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR GCA 90 bp | TTTGGCTACTTTGTCAACAGAAAAGTATCCATACAGTTGACTTCCCAACACAAACAGTTATCATGGGACTaGAGCATGGACAGACAAGCA | + |
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Preference number: 4 (lower is better) Translates to: FGYFVNRKVSIQLTSQHKQLSWD*SMDRQA Trigger: TGCTTGTCTGTCCATGCTGCAGTCCCATGATAACTG...TTTGTGTTGGGAAGTCAACTGTATGGATACTTTTCTGTTGACAAAGTAGCCAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR GCA 90 bp | CTCAAAGTTAACTACTCTAAGGCAACAAGGGAGGACATTAGAGGTGTACCTTGTCGAGGTTCATACTTATaGAAGGAGTTTAACATGATC | + |
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Preference number: 4 (lower is better) Translates to: LKVNYSKATREDIRGVPCRGSYL*KEFNMI Trigger: GATCATGTTAAACTCCTTGCATAAGTATGAACCTCG...ACAAGGTACACCTCTAATGTCCTCCCTTGTTGCCTTAGAGTAGTTAACTTTGAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| 3UTR CAA 72 bp | TTTGGCTACTTTGTCAACAGAAAAGTATCCATACAGTaGACTTCCCAACACAAAAAGCTACGTGTGCTTAAA | + |
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Preference number: 4 (lower is better) Translates to: FGYFVNRKVSIQ*TSQHKKLRVLK Trigger: TTTAAGCACACGTAGCTTTTTGTGTTGGGAAGTCAACTGTATGGATACTTTTCTGTTGACAAAGTAGCCAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS CCA 90 bp | GCCACAGCTCGCTCTCCTCCAGGCCCACTCGCAGTTCGCGTTCGGTaGGGTCTCCCTTCTCGCTGCCCGCCTGCAGCTCGCTCTCCACGG | + |
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Preference number: 5 (lower is better) Translates to: ATARSPPGPLAVRVR*GLPSRCPPAARSPR Trigger: CCGTGGAGAGCGAGCTGCAGGCGGGCAGCGAGAAGGGAGACCCCACCGAACGCGAACTGCGAGTGGGCCTGGAGGAGAGCGAGCTGTGGC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS TCA 90 bp | CAGAGACTGGGATACTGGCTAGAGCCAGTAGGTGGGCTGGCGTTATaGCTCACAGGCAGCATGCTGGTGTGGCCAGGCACTCCGAGGCTA | + |
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Preference number: 5 (lower is better) Translates to: QRLGYWLEPVGGLAL*LTGSMLVWPGTPRL Trigger: TAGCCTCGGAGTGCCTGGCCACACCAGCATGCTGCCTGTGAGTCATAACGCCAGCCCACCTACTGGCTCTAGCCAGTATCCCAGTCTCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074667.9 ENSMUST00000177118.2 |
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| CDS CCA 90 bp | GAACTGAGCTCCCAGCCCGTTGGACACCCCAGCTGTCTGGGAGCCTaGGGTGATGGTACCATTGCTCACAGACCAGAGACTGGGATACTG | + |
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Preference number: 5 (lower is better) Translates to: ELSSQPVGHPSCLGA*GDGTIAHRPETGIL Trigger: CAGTATCCCAGTCTCTGGTCTGTGAGCAATGGTACCATCACCCCAGGCTCCCAGACAGCTGGGGTGTCCAACGGGCTGGGAGCTCAGTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074667.9 ENSMUST00000177118.2 |
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| CDS-3UTR CAA 90 bp | TCTGTCCTCAAAGTTAACTACTCTAAGGCAACAAGGGAGGACATTAGAGGTGTAGCTGGTGATCATGCGTaGCGGGCCCCCAACTCTCAC | + |
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Preference number: 5 (lower is better) Translates to: SVLKVNYSKATREDIRGVAGDHA*RAPNSH Trigger: GTGAGAGTTGGGGGCCCGCAACGCATGATCACCAGC...TACACCTCTAATGTCCTCCCTTGTTGCCTTAGAGTAGTTAACTTTGAGGACAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR CAA 90 bp | AAGATCCAGTTGACACCGGTTGTTACAAGTCTCAGCACATGGAGGAAAGTTCAATATTTCCAGCGGTGGTaGTCAGCCGTCACGAAGTCC | + |
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Preference number: 5 (lower is better) Translates to: KIQLTPVVTSLSTWRKVQYFQRW*SAVTKS Trigger: GGACTTCGTGACGGCTGACAACCACCGCTGGAAATA...TTGAACTTTCCTCCATGTGCTGAGACTTGTAACAACCGGTGTCAACTGGATCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR CAA 90 bp | AAGATCCAGTTGACACCGGTTGTTACAAGTCTCAGCACATGGAGGAAAGTTCAATTGGTGAGTTTGACTTaGCTGAAAGACACAGGCGCC | + |
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Preference number: 5 (lower is better) Translates to: KIQLTPVVTSLSTWRKVQLVSLT*LKDTGA Trigger: GGCGCCTGTGTCTTTCAGCAAAGTCAAACTCACCAA...TTGAACTTTCCTCCATGTGCTGAGACTTGTAACAACCGGTGTCAACTGGATCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR CAA 90 bp | TTTGGCTACTTTGTCAACAGAAAAGTATCCATACAGTTGACTTCCCAACACAAATCGTTAGTTAGCTCCTaGAAGCGCAGCCACAGCTCG | + |
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Preference number: 5 (lower is better) Translates to: FGYFVNRKVSIQLTSQHKSLVSS*KRSHSS Trigger: CGAGCTGTGGCTGCGCTTCAAGGAGCTAACTAACGA...TTTGTGTTGGGAAGTCAACTGTATGGATACTTTTCTGTTGACAAAGTAGCCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS-3UTR CAA 90 bp | TTTGGCTACTTTGTCAACAGAAAAGTATCCATACAGTTGACTTCCCAACACAAATGGTCGTTTCTTTCTTaGGCATCAAGGAAGGCTTTA | + |
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Preference number: 5 (lower is better) Translates to: FGYFVNRKVSIQLTSQHKWSFLS*ASRKAL Trigger: TAAAGCCTTCCTTGATGCCAAAGAAAGAAACGACCA...TTTGTGTTGGGAAGTCAACTGTATGGATACTTTTCTGTTGACAAAGTAGCCAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS CCA 90 bp | TTTGTGGTCGTTTCTTTCTTTGGCATCAAGGAAGGCTTTAGCAAATaGGTTGTATTTAATTTTAAGGGCTGTAATCTCCTCATTCTGGTA | + |
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Preference number: 5 (lower is better) Translates to: FVVVSFFGIKEGFSK*VVFNFKGCNLLILV Trigger: TACCAGAATGAGGAGATTACAGCCCTTAAAATTAAATACAACCCATTTGCTAAAGCCTTCCTTGATGCCAAAGAAAGAAACGACCACAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074667.9 ENSMUST00000177118.2 |
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| CDS-3UTR CAA 90 bp | TTTGGCTACTTTGTCAACAGAAAAGTATCCATACAGTTGACTTCCCAACACAAATCCTCCATTACATCTTaGTGGTCGTTTCTTTCTTTG | + |
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Preference number: 5 (lower is better) Translates to: FGYFVNRKVSIQLTSQHKSSITS*WSFLSL Trigger: CAAAGAAAGAAACGACCACAAAGATGTAATGGAGGA...TTTGTGTTGGGAAGTCAACTGTATGGATACTTTTCTGTTGACAAAGTAGCCAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS CCA 72 bp | CGCTCTCCTCCAGGCCCACTCGCAGTTCGCGTTCGGTaGGGTCTCCCTTCTCGCTGCCCGCCTGCAGCTCGC | + |
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Preference number: 6 (lower is better) Translates to: RSPPGPLAVRVR*GLPSRCPPAAR Trigger: GCGAGCTGCAGGCGGGCAGCGAGAAGGGAGACCCCACCGAACGCGAACTGCGAGTGGGCCTGGAGGAGAGCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS TCA 72 bp | GCCCGTTGGACACCCCAGCTGTCTGGGAGCCTGGGGTaGTGGTACCATTGCTCACAGACCAGAGACTGGGAT | + |
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Preference number: 6 (lower is better) Translates to: ARWTPQLSGSLG*WYHCSQTRDWD Trigger: ATCCCAGTCTCTGGTCTGTGAGCAATGGTACCATCACCCCAGGCTCCCAGACAGCTGGGGTGTCCAACGGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074667.9 ENSMUST00000177118.2 |
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| CDS CCA 72 bp | TCCCAGCCCGTTGGACACCCCAGCTGTCTGGGAGCCTaGGGTGATGGTACCATTGCTCACAGACCAGAGACT | + |
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Preference number: 6 (lower is better) Translates to: SQPVGHPSCLGA*GDGTIAHRPET Trigger: AGTCTCTGGTCTGTGAGCAATGGTACCATCACCCCAGGCTCCCAGACAGCTGGGGTGTCCAACGGGCTGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074667.9 ENSMUST00000177118.2 |
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| CDS CAA 72 bp | CTGGGTCTCGGGAAAGCAGTGGCTGGTGATCATGCGTaGCGGGCCCCCAACTCTCACGATGTGAATCCGAGG | + |
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Preference number: 6 (lower is better) Translates to: LGLGKAVAGDHA*RAPNSHDVNPR Trigger: CCTCGGATTCACATCGTGAGAGTTGGGGGCCCGCAACGCATGATCACCAGCCACTGCTTTCCCGAGACCCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000074667.9 ENSMUST00000136922.8 ENSMUST00000177118.2 |
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| CDS CAA 90 bp | CCGTTGGACACCCCAGCTGTCTGGGAGCCTGGGGTGATGGTACCATaGCTCACAGACCAGAGACTGGGATACTGGCTAGAGCCAGTAGGT | + |
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Preference number: 6 (lower is better) Translates to: PLDTPAVWEPGVMVP*LTDQRLGYWLEPVG Trigger: ACCTACTGGCTCTAGCCAGTATCCCAGTCTCTGGTCTGTGAGCAATGGTACCATCACCCCAGGCTCCCAGACAGCTGGGGTGTCCAACGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074667.9 ENSMUST00000177118.2 |
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| CDS CCA 72 bp | AGACCAGAGACTGGGATACTGGCTAGAGCCAGTAGGTaGGCTGGCGTTATGACTCACAGGCAGCATGCTGGT | + |
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Preference number: 6 (lower is better) Translates to: RPETGILARASR*AGVMTHRQHAG Trigger: ACCAGCATGCTGCCTGTGAGTCATAACGCCAGCCCACCTACTGGCTCTAGCCAGTATCCCAGTCTCTGGTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074667.9 ENSMUST00000177118.2 |
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| CDS CCA 72 bp | GGTGACACAGGTGTCCACGAGGCTATGAGGAGGCTTTaGGCCGTGTCATACTGGCTGTCAGAAATGTCTGTG | + |
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Preference number: 6 (lower is better) Translates to: GDTGVHEAMRRL*AVSYWLSEMSV Trigger: CACAGACATTTCTGACAGCCAGTATGACACGGCCCAAAGCCTCCTCATAGCCTCGTGGACACCTGTGTCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074667.9 |
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| CDS CAA 72 bp | GCATGGACAGACAAGCAGATGAATTGTCCGCATAGGTaGGAGAGCTGTTCCGATGAGCATAGGGGCTGGGGT | + |
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Preference number: 6 (lower is better) Translates to: AWTDKQMNCPHR*ESCSDEHRGWG Trigger: ACCCCAGCCCCTATGCTCATCGGAACAGCTCTCCAACCTATGCGGACAATTCATCTGCTTGTCTGTCCATGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074667.9 ENSMUST00000177118.2 |
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| CDS CAA 72 bp | GGCTGCTGGCAGTCCCCCGGTTCCTCCATTACATCTTaGTGGTCGTTTCTTTCTTTGGCATCAAGGAAGGCT | + |
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Preference number: 6 (lower is better) Translates to: GCWQSPGSSITS*WSFLSLASRKA Trigger: AGCCTTCCTTGATGCCAAAGAAAGAAACGACCACAAAGATGTAATGGAGGAACCGGGGGACTGCCAGCAGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000074667.9 ENSMUST00000177118.2 |
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| CDS CCA 72 bp | TGCTGGCAGTCCCCCGGTTCCTCCATTACATCTTTGTaGTCGTTTCTTTCTTTGGCATCAAGGAAGGCTTTA | + |
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Preference number: 6 (lower is better) Translates to: CWQSPGSSITSL*SFLSLASRKAL Trigger: TAAAGCCTTCCTTGATGCCAAAGAAAGAAACGACCACAAAGATGTAATGGAGGAACCGGGGGACTGCCAGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000074667.9 ENSMUST00000177118.2 |
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| CDS CAA 72 bp | GGTTCCTCCATTACATCTTTGTGGTCGTTTCTTTCTTaGGCATCAAGGAAGGCTTTAGCAAATGGGTTGTAT | + |
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Preference number: 6 (lower is better) Translates to: GSSITSLWSFLS*ASRKALANGLY Trigger: ATACAACCCATTTGCTAAAGCCTTCCTTGATGCCAAAGAAAGAAACGACCACAAAGATGTAATGGAGGAACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074667.9 ENSMUST00000177118.2 |
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| CDS CAA 90 bp | CAGTCCCCCGGTTCCTCCATTACATCTTTGTGGTCGTTTCTTTCTTaGGCATCAAGGAAGGCTTTAGCAAATGGGTTGTATTTAATTTTA | + |
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Preference number: 6 (lower is better) Translates to: QSPGSSITSLWSFLS*ASRKALANGLYLIL Trigger: TAAAATTAAATACAACCCATTTGCTAAAGCCTTCCTTGATGCCAAAGAAAGAAACGACCACAAAGATGTAATGGAGGAACCGGGGGACTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000074667.9 ENSMUST00000177118.2 |
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