RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SYT9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000062542

Ensembl transcript IDs: ENSMUST00000073459.12, ENSMUST00000130414.8, ENSMUST00000137663.2

Found 215 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGTGGGACTCTGCCATGTGCATGGGAAGGGACAGTGAGTTTGCTATaGACTGACCTGCCTTGCATGAGACTTTTTCCAGGCTGGCTTAGC +
Preference number: 1 (lower is better)
Translates to: SGTLPCAWEGTVSLL*TDLPCMRLFPGWLS
Trigger: GCTAAGCCAGCCTGGAAAAAGTCTCATGCAAGGCAGGTCAGTTCATAGCAAACTCACTGTCCCTTCCCATGCACATGGCAGAGTCCCACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CCA 90 bp GAGGTGGAAAAGAGCCTCTTTCTGTGGCTGCCCAAGTCTATACCCTaGGCTGTTGCATATGGAAACAGCCAGAAGGCAGCTGTGTCAAGA +
Preference number: 1 (lower is better)
Translates to: EVEKSLFLWLPKSIP*AVAYGNSQKAAVSR
Trigger: TCTTGACACAGCTGCCTTCTGGCTGTTTCCATATGCAACAGCCCAGGGTATAGACTTGGGCAGCCACAGAAAGAGGCTCTTTTCCACCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CCA 90 bp AACTGCAACCCAACTCTGGGTTCTGTTACAGAGACTGGAGGGGAATaGAATTGTGGAACAGTGATGCAGGGGGAGGGTCTTCTAGACCCA +
Preference number: 1 (lower is better)
Translates to: NCNPTLGSVTETGGE*NCGTVMQGEGLLDP
Trigger: TGGGTCTAGAAGACCCTCCCCCTGCATCACTGTTCCACAATTCCATTCCCCTCCAGTCTCTGTAACAGAACCCAGAGTTGGGTTGCAGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR GCA 90 bp CCAACCAAAGGCCATCTTGGCACTCAAGCCACTTACTATGCCACTTaGTCTCTTCCACAGTCCAACTTGGCTTTTGACAGTGAGGGAGGA +
Preference number: 1 (lower is better)
Translates to: PTKGHLGTQATYYAT*SLPQSNLAFDSEGG
Trigger: TCCTCCCTCACTGTCAAAAGCCAAGTTGGACTGTGGAAGAGAGCAAGTGGCATAGTAAGTGGCTTGAGTGCCAAGATGGCCTTTGGTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR GCA 90 bp AAAGAGCCTCTTTCTGTGGCTGCCCAAGTCTATACCCTGGGCTGTTaGATATGGAAACAGCCAGAAGGCAGCTGTGTCAAGAAAGCCCAA +
Preference number: 1 (lower is better)
Translates to: KEPLSVAAQVYTLGC*IWKQPEGSCVKKAQ
Trigger: TTGGGCTTTCTTGACACAGCTGCCTTCTGGCTGTTTCCATATGCAACAGCCCAGGGTATAGACTTGGGCAGCCACAGAAAGAGGCTCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR TCA 90 bp TTCTGTCCTTCCAGGGCATCCAAATCAAATGACTGCATGTTAGACTaGCCACTGTCAGGACCAGTGTCATGCCCATCCAACCAAAGGCCA +
Preference number: 1 (lower is better)
Translates to: FCPSRASKSNDCMLD*PLSGPVSCPSNQRP
Trigger: TGGCCTTTGGTTGGATGGGCATGACACTGGTCCTGACAGTGGTCAGTCTAACATGCAGTCATTTGATTTGGATGCCCTGGAAGGACAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR TCA 90 bp CCCTGTCCTGTTGGCACTTGGCCTTCATACTTTGGTTCTAAATACTaGTATGGTGGCGGATGTCTGAATGGAAGGGATGGGCAAGGAAGG +
Preference number: 1 (lower is better)
Translates to: PCPVGTWPSYFGSKY*YGGGCLNGRDGQGR
Trigger: CCTTCCTTGCCCATCCCTTCCATTCAGACATCCGCCACCATATCAGTATTTAGAACCAAAGTATGAAGGCCAAGTGCCAACAGGACAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CCA 90 bp ATGAAGAGAGGCTGCTCTCCAGGATGGTTAACTGCAACCCAACTCTaGGTTCTGTTACAGAGACTGGAGGGGAATGGAATTGTGGAACAG +
Preference number: 1 (lower is better)
Translates to: MKRGCSPGWLTATQL*VLLQRLEGNGIVEQ
Trigger: CTGTTCCACAATTCCATTCCCCTCCAGTCTCTGTAACAGAACCCAGAGTTGGGTTGCAGTTAACCATCCTGGAGAGCAGCCTCTCTTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CCA 90 bp CTGAGGGAATTCAGATTGATAGCCAGCTTCTGGCCACAGCTGTACTaGCTAGGTAAAGCTCTCCACACACAAAGCCATCTGTTTACCACG +
Preference number: 1 (lower is better)
Translates to: LREFRLIASFWPQLY*LGKALHTQSHLFTT
Trigger: CGTGGTAAACAGATGGCTTTGTGTGTGGAGAGCTTTACCTAGCCAGTACAGCTGTGGCCAGAAGCTGGCTATCAATCTGAATTCCCTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR TCA 90 bp CATAGGCTGAACTTTGAACATAGGTTCCCTTTGAACCCCTTCAAATaGAGTTGGAAGGAGATGGGAGTGGATCTGGGAGGCCAGGGAATG +
Preference number: 1 (lower is better)
Translates to: HRLNFEHRFPLNPFK*SWKEMGVDLGGQGM
Trigger: CATTCCCTGGCCTCCCAGATCCACTCCCATCTCCTTCCAACTTCATTTGAAGGGGTTCAAAGGGAACCTATGTTCAAAGTTCAGCCTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR TCA 90 bp AGGGAGACCAAACAGAACACAAGAGAACAGAGGCAGAGTTGCAAATaGGCTGAGGGAATTCAGATTGATAGCCAGCTTCTGGCCACAGCT +
Preference number: 1 (lower is better)
Translates to: RETKQNTREQRQSCK*AEGIQIDSQLLATA
Trigger: AGCTGTGGCCAGAAGCTGGCTATCAATCTGAATTCCCTCAGCTCATTTGCAACTCTGCCTCTGTTCTCTTGTGTTCTGTTTGGTCTCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR GCA 90 bp AAAAGTGGTATGTGTCTGAGGTGGAAAAGAGCCTCTTTCTGTGGCTaGCCAAGTCTATACCCTGGGCTGTTGCATATGGAAACAGCCAGA +
Preference number: 1 (lower is better)
Translates to: KSGMCLRWKRASFCG*PSLYPGLLHMETAR
Trigger: TCTGGCTGTTTCCATATGCAACAGCCCAGGGTATAGACTTGGGCAGCCACAGAAAGAGGCTCTTTTCCACCTCAGACACATACCACTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CCA 90 bp AGAGTTGCAAATGAGCTGAGGGAATTCAGATTGATAGCCAGCTTCTaGCCACAGCTGTACTGGCTAGGTAAAGCTCTCCACACACAAAGC +
Preference number: 1 (lower is better)
Translates to: RVANELREFRLIASF*PQLYWLGKALHTQS
Trigger: GCTTTGTGTGTGGAGAGCTTTACCTAGCCAGTACAGCTGTGGCCAGAAGCTGGCTATCAATCTGAATTCCCTCAGCTCATTTGCAACTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR TCA 90 bp CACATCCAATTTGGAAAGAGGGCCAGTTATTGCTGTGGTTACAGCTaGGTATTTCTTCACTGGAGTCATCTGGGTGTTGCTAGGTGGGAA +
Preference number: 1 (lower is better)
Translates to: HIQFGKRASYCCGYS*VFLHWSHLGVARWE
Trigger: TTCCCACCTAGCAACACCCAGATGACTCCAGTGAAGAAATACTCAGCTGTAACCACAGCAATAACTGGCCCTCTTTCCAAATTGGATGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR GCA 90 bp TTCTTCACTGGAGTCATCTGGGTGTTGCTAGGTGGGAAAAGTTACTaGAGATCTTTGTTACATGGTTGTCCGACTGTGTCCTTGGCACAA +
Preference number: 1 (lower is better)
Translates to: FFTGVIWVLLGGKSY*RSLLHGCPTVSLAQ
Trigger: TTGTGCCAAGGACACAGTCGGACAACCATGTAACAAAGATCTGCAGTAACTTTTCCCACCTAGCAACACCCAGATGACTCCAGTGAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR GCA 90 bp TCGGGTGCAACCTACACTGAAAAACAAAGTGAAATGAAGAGAGGCTaGTCTCCAGGATGGTTAACTGCAACCCAACTCTGGGTTCTGTTA +
Preference number: 1 (lower is better)
Translates to: SGATYTEKQSEMKRG*SPGWLTATQLWVLL
Trigger: TAACAGAACCCAGAGTTGGGTTGCAGTTAACCATCCTGGAGAGCAGCCTCTCTTCATTTCACTTTGTTTTTCAGTGTAGGTTGCACCCGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR TCA 90 bp AGCTTCTCTAGAGCATATCACCTTGGGCCACCTGAAGAAAATAGATaGACCCTTCAGATTCACCACATCCAATTTGGAAAGAGGGCCAGT +
Preference number: 1 (lower is better)
Translates to: SFSRAYHLGPPEENR*TLQIHHIQFGKRAS
Trigger: ACTGGCCCTCTTTCCAAATTGGATGTGGTGAATCTGAAGGGTTCATCTATTTTCTTCAGGTGGCCCAAGGTGATATGCTCTAGAGAAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CCA 90 bp TCAGATTCACCACATCCAATTTGGAAAGAGGGCCAGTTATTGCTGTaGTTACAGCTGAGTATTTCTTCACTGGAGTCATCTGGGTGTTGC +
Preference number: 1 (lower is better)
Translates to: SDSPHPIWKEGQLLL*LQLSISSLESSGCC
Trigger: GCAACACCCAGATGACTCCAGTGAAGAAATACTCAGCTGTAACCACAGCAATAACTGGCCCTCTTTCCAAATTGGATGTGGTGAATCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CCA 90 bp TACACTGAAAAACAAAGTGAAATGAAGAGAGGCTGCTCTCCAGGATaGTTAACTGCAACCCAACTCTGGGTTCTGTTACAGAGACTGGAG +
Preference number: 1 (lower is better)
Translates to: YTEKQSEMKRGCSPG*LTATQLWVLLQRLE
Trigger: CTCCAGTCTCTGTAACAGAACCCAGAGTTGGGTTGCAGTTAACCATCCTGGAGAGCAGCCTCTCTTCATTTCACTTTGTTTTTCAGTGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR TCA 90 bp GATATATATTTAAATATTCTGTCCTTCCAGGGCATCCAAATCAAATaGCTGCATGTTAGACTGACCACTGTCAGGACCAGTGTCATGCCC +
Preference number: 1 (lower is better)
Translates to: DIYLNILSFQGIQIK*LHVRLTTVRTSVMP
Trigger: GGGCATGACACTGGTCCTGACAGTGGTCAGTCTAACATGCAGTCATTTGATTTGGATGCCCTGGAAGGACAGAATATTTAAATATATATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR TCA 90 bp GGCCTTCATACTTTGGTTCTAAATACTGATATGGTGGCGGATGTCTaGATGGAAGGGATGGGCAAGGAAGGTGTGTTTTTCTCATTTTAT +
Preference number: 1 (lower is better)
Translates to: GLHTLVLNTDMVADV*MEGMGKEGVFFSFY
Trigger: ATAAAATGAGAAAAACACACCTTCCTTGCCCATCCCTTCCATTCAGACATCCGCCACCATATCAGTATTTAGAACCAAAGTATGAAGGCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CCA 90 bp GTTATTGCTGTGGTTACAGCTGAGTATTTCTTCACTGGAGTCATCTaGGTGTTGCTAGGTGGGAAAAGTTACTGCAGATCTTTGTTACAT +
Preference number: 1 (lower is better)
Translates to: VIAVVTAEYFFTGVI*VLLGGKSYCRSLLH
Trigger: ATGTAACAAAGATCTGCAGTAACTTTTCCCACCTAGCAACACCCAGATGACTCCAGTGAAGAAATACTCAGCTGTAACCACAGCAATAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR TCA 90 bp CAAGAAAGCCCAAAAGCTGTGCCTTTTTCCAGTGTCATCTCTCAGTaGTCTTATCTCATAACACACACTTCTGTGTCCAGGAAAGATTAT +
Preference number: 1 (lower is better)
Translates to: QESPKAVPFSSVISQ*SYLITHTSVSRKDY
Trigger: ATAATCTTTCCTGGACACAGAAGTGTGTGTTATGAGATAAGATCACTGAGAGATGACACTGGAAAAAGGCACAGCTTTTGGGCTTTCTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR TCA 90 bp CCTTCAAATGAAGTTGGAAGGAGATGGGAGTGGATCTGGGAGGCCAGGGAATGCCTGACCTGCCTTGCATaGGACTTTTTCCAGGCTGGC +
Preference number: 2 (lower is better)
Translates to: PSNEVGRRWEWIWEARECLTCLA*DFFQAG
Trigger: GCCAGCCTGGAAAAAGTCTCATGCAAGGCAGGTCAG...GCATTCCCTGGCCTCCCAGATCCACTCCCATCTCCTTCCAACTTCATTTGAAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CAA 90 bp CCAGGAGGATGCTGGGTAATGGATGAGCTACCCTGGGGAGAGCCCTaGGCCTTCATTCTTGTAGGTATTTCCATTCCCCAAGTGCTGCAA +
Preference number: 2 (lower is better)
Translates to: PGGCWVMDELPWGEP*AFILVGISIPQVLQ
Trigger: TTGCAGCACTTGGGGAATGGAAATACCTACAAGAATGAAGGCCAAGGGCTCTCCCCAGGGTAGCTCATCCATTACCCAGCATCCTCCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR TCA 90 bp ATACTGATATGGTGGCGGATGTCTGAATGGAAGGGATGGGCAAGGAAGGTGTGTGCTGCTAGCTCAAGGTaGGGAGATCCTGAGGTGGGA +
Preference number: 2 (lower is better)
Translates to: ILIWWRMSEWKGWARKVCAASSR*GDPEVG
Trigger: TCCCACCTCAGGATCTCCTCACCTTGAGCTAGCAGC...ACACACCTTCCTTGCCCATCCCTTCCATTCAGACATCCGCCACCATATCAGTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR GCA 90 bp CAGCTGTACTGGCTAGGTAAAGCTCTCCACACACAAAGCCATCTGTTTACCACGAGTGGATCTGGTCGATaGTCTCGGGAGGGACGTCGA +
Preference number: 2 (lower is better)
Translates to: QLYWLGKALHTQSHLFTTSGSGR*SREGRR
Trigger: TCGACGTCCCTCCCGAGAGCATCGACCAGATCCACT...CGTGGTAAACAGATGGCTTTGTGTGTGGAGAGCTTTACCTAGCCAGTACAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130414.8
3UTR-3UTR TCA 90 bp GTCTATACCCTGGGCTGTTGCATATGGAAACAGCCAGAAGGCAGCTGTGTCAAGCACGGTCATAGTCCATaGCGGCTATGGACAAGTGGA +
Preference number: 2 (lower is better)
Translates to: VYTLGCCIWKQPEGSCVKHGHSP*RLWTSG
Trigger: TCCACTTGTCCATAGCCGTCATGGACTATGACCGTG...CTTGACACAGCTGCCTTCTGGCTGTTTCCATATGCAACAGCCCAGGGTATAGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130414.8
3UTR-3UTR TCA 90 bp CTTTCTGTGGCTGCCCAAGTCTATACCCTGGGCTGTTGCATATGGAAACAGCCACTTGGCACACGCCAATaGCCTCATTGTGACCTACAC +
Preference number: 2 (lower is better)
Translates to: LSVAAQVYTLGCCIWKQPLGTRQ*PHCDLH
Trigger: GTGTAGGTCACAATGAGGTCATTGGCGTGTGCCAAG...TGGCTGTTTCCATATGCAACAGCCCAGGGTATAGACTTGGGCAGCCACAGAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130414.8
3UTR-3UTR GCA 90 bp AGATTATTCCTGGATGCATATTCCACTGGGAGGCAAGTGTCCCTAACAAAGATGCACTCCAGTGGTCTCTaGCCAGCCGCTCAGCCTCGT +
Preference number: 2 (lower is better)
Translates to: RLFLDAYSTGRQVSLTKMHSSGL*PAAQPR
Trigger: ACGAGGCTGAGCGGCTGGGCAGAGACCACTGGAGTG...CATCTTTGTTAGGGACACTTGCCTCCCAGTGGAATATGCATCCAGGAATAATCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp ATACTGATATGGTGGCGGATGTCTGAATGGAAGGGATGGGCAAGGAAGGTGTGTAGATGGGAGTGGATCTaGGAGGCCAGGGAATGCACT +
Preference number: 2 (lower is better)
Translates to: ILIWWRMSEWKGWARKVCRWEWI*EARECT
Trigger: AGTGCATTCCCTGGCCTCCCAGATCCACTCCCATCT...ACACACCTTCCTTGCCCATCCCTTCCATTCAGACATCCGCCACCATATCAGTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp CAGCTGTACTGGCTAGGTAAAGCTCTCCACACACAAAGCCATCTGTTTACCACGGAAGTTGGAAGGAGATaGGAGTGGATCTGGGAGGCC +
Preference number: 2 (lower is better)
Translates to: QLYWLGKALHTQSHLFTTEVGRR*EWIWEA
Trigger: GGCCTCCCAGATCCACTCCCATCTCCTTCCAACTTC...CGTGGTAAACAGATGGCTTTGTGTGTGGAGAGCTTTACCTAGCCAGTACAGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CAA 90 bp AAAAGAGCCTCTTTCTGTGGCTGCCCAAGTCTATACCCTGGGCTGTaGCATATGGAAACAGCCAGAAGGCAGCTGTGTCAAGAAAGCCCA +
Preference number: 2 (lower is better)
Translates to: KRASFCGCPSLYPGL*HMETARRQLCQESP
Trigger: TGGGCTTTCTTGACACAGCTGCCTTCTGGCTGTTTCCATATGCAACAGCCCAGGGTATAGACTTGGGCAGCCACAGAAAGAGGCTCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR TCA 90 bp CAGCTGTACTGGCTAGGTAAAGCTCTCCACACACAAAGCCATCTGTTTACCACGGACTGCATGTTAGACTaGCCACTGTCAGGACCAGTG +
Preference number: 2 (lower is better)
Translates to: QLYWLGKALHTQSHLFTTDCMLD*PLSGPV
Trigger: CACTGGTCCTGACAGTGGTCAGTCTAACATGCAGTC...CGTGGTAAACAGATGGCTTTGTGTGTGGAGAGCTTTACCTAGCCAGTACAGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp CAAGTCTATACCCTGGGCTGTTGCATATGGAAACAGCCAGAAGGCAGCTGTGTCGTCCGACTGTGTCCTTaGCACAAGCAGTCTTCTTCT +
Preference number: 2 (lower is better)
Translates to: QVYTLGCCIWKQPEGSCVVRLCP*HKQSSS
Trigger: AGAAGAAGACTGCTTGTGCCAAGGACACAGTCGGAC...GACACAGCTGCCTTCTGGCTGTTTCCATATGCAACAGCCCAGGGTATAGACTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp AGAGGGCCAGTTATTGCTGTGGTTACAGCTGAGTATTTCTTCACTGGAGTCATCAGCATCTCACTCCAGTaGTCTCTGCCCAGCCGCTCA +
Preference number: 2 (lower is better)
Translates to: RGPVIAVVTAEYFFTGVISISLQ*SLPSRS
Trigger: TGAGCGGCTGGGCAGAGACCACTGGAGTGAGATGCT...GATGACTCCAGTGAAGAAATACTCAGCTGTAACCACAGCAATAACTGGCCCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130414.8
3UTR CAA 90 bp GGTGGGAACAACAGGCTACCCCAGGATCTCCAACCTGAGCTCCCATaGCCAAGGACATGTCAAAGCTTAATAAGATGGCTGCCTGATAAT +
Preference number: 2 (lower is better)
Translates to: GGNNRLPQDLQPELP*PRTCQSLIRWLPDN
Trigger: ATTATCAGGCAGCCATCTTATTAAGCTTTGACATGTCCTTGGCAATGGGAGCTCAGGTTGGAGATCCTGGGGTAGCCTGTTGTTCCCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR TCA 90 bp TCTCCACACACAAAGCCATCTGTTTACCACGTGGGTAGTCTTCTTCGCCTGAATAAGGTGAGGAGATCCTaGGGTGGGAACAACAGGCTA +
Preference number: 2 (lower is better)
Translates to: SPHTKPSVYHVGSLLRLNKVRRS*GGNNRL
Trigger: TAGCCTGTTGTTCCCACCTCAGGATCTCCTCACCTT...ATTCAGGCGAAGAAGACTACCCACGTGGTAAACAGATGGCTTTGTGTGTGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR TCA 90 bp TGGTATGTGTCTGAGGTGGAAAAGAGCCTCTTTCTGTGGCTGCCCAAGTCTATAGCCGTCACACATCAGTaGGACTTTCACGTAGGGATC +
Preference number: 2 (lower is better)
Translates to: WYVSEVEKSLFLWLPKSIAVTHQ*DFHVGI
Trigger: GATCCCTACGTGAAAGTCTCACTGATGTGTGACGGC...TATAGACTTGGGCAGCCACAGAAAGAGGCTCTTTTCCACCTCAGACACATACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130414.8
3UTR-3UTR GCA 90 bp CCTTCAAATGAAGTTGGAAGGAGATGGGAGTGGATCTGGGAGGCCAGGGAATGCTCAAGCCACTTACTATaGCACTTGCTCTCTTCCACA +
Preference number: 2 (lower is better)
Translates to: PSNEVGRRWEWIWEARECSSHLL*HLLSST
Trigger: TGTGGAAGAGAGCAAGTGGCATAGTAAGTGGCTTGA...GCATTCCCTGGCCTCCCAGATCCACTCCCATCTCCTTCCAACTTCATTTGAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR GCA 90 bp ACCAAAGGTCTCCACCCTTTTAAGACACGACAAGATCTGGCGTTGGCAGTAGGAACTGGTCCAGGAGGATaGTGGGTAATGGATGAGCTA +
Preference number: 2 (lower is better)
Translates to: TKGLHPFKTRQDLALAVGTGPGG*WVMDEL
Trigger: TAGCTCATCCATTACCCAGCATCCTCCTGGACCAGT...TCCTACTGCCAACGCCAGATCTTGTCGTGTCTTAAAAGGGTGGAGACCTTTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR GCA 90 bp CTGCAGATCTTTGTTACATGGTTGTCCGACTGTGTCCTTGGCACAAGCAGTCTTTTCTCCATCAGAGAGTaGCAGTGTGCGATGGGCTTC +
Preference number: 2 (lower is better)
Translates to: LQIFVTWLSDCVLGTSSLFSIRE*QCAMGF
Trigger: GAAGCCCATCGCACACTGGCACTCTCTGATGGAGAA...AAGACTGCTTGTGCCAAGGACACAGTCGGACAACCATGTAACAAAGATCTGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp ACAAGCAGTCTTCTTCTCCATAGTCATCGTTTCTCCATCAGAGAGTGCCAGTGTATGGACAAGTGGATCTaGTCGATGCTCTCGGGAGGG +
Preference number: 2 (lower is better)
Translates to: TSSLLLHSHRFSIRECQCMDKWI*SMLSGG
Trigger: CCCTCCCGAGAGCATCGACCAGATCCACTTGTCCAT...ACACTGGCACTCTCTGATGGAGAAACGATGACTATGGAGAAGAAGACTGCTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130414.8
3UTR-3UTR TCA 90 bp GGACCAGTGTCATGCCCATCCAACCAAAGGCCATCTTGGCACTCAAGCCACTTACCTGAAGAAAATAGATaGACCCTTCAGATTCACCAC +
Preference number: 2 (lower is better)
Translates to: GPVSCPSNQRPSWHSSHLPEENR*TLQIHH
Trigger: GTGGTGAATCTGAAGGGTTCATCTATTTTCTTCAGG...TAAGTGGCTTGAGTGCCAAGATGGCCTTTGGTTGGATGGGCATGACACTGGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR TCA 90 bp GGACCAGTGTCATGCCCATCCAACCAAAGGCCATCTTGGCACTCAAGCCACTTAGGTGGAATTATTCTCTaGAGACAGTCATTAGCTCAC +
Preference number: 2 (lower is better)
Translates to: GPVSCPSNQRPSWHSSHLGGIIL*RQSLAH
Trigger: GTGAGCTAATGACTGTCTTCAGAGAATAATTCCACC...TAAGTGGCTTGAGTGCCAAGATGGCCTTTGGTTGGATGGGCATGACACTGGTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp GGACCAGTGTCATGCCCATCCAACCAAAGGCCATCTTGGCACTCAAGCCACTTATCACCACATCCAATTTaGAAAGAGGGCCAGTTATTG +
Preference number: 2 (lower is better)
Translates to: GPVSCPSNQRPSWHSSHLSPHPI*KEGQLL
Trigger: CAATAACTGGCCCTCTTTCCAAATTGGATGTGGTGA...TAAGTGGCTTGAGTGCCAAGATGGCCTTTGGTTGGATGGGCATGACACTGGTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp ATACTGATATGGTGGCGGATGTCTGAATGGAAGGGATGGGCAAGGAAGGTGTGTGAGACTGGAGGGGAATaGAATTGTGGAACAGTGATG +
Preference number: 2 (lower is better)
Translates to: ILIWWRMSEWKGWARKVCETGGE*NCGTVM
Trigger: CATCACTGTTCCACAATTCCATTCCCCTCCAGTCTC...ACACACCTTCCTTGCCCATCCCTTCCATTCAGACATCCGCCACCATATCAGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR TCA 90 bp GGCTGCCCAAGTCTATACCCTGGGCTGTTGCATATGGAAACAGCCAGAAGGCAGACAGGTAGTAAAGTTTaGTTTGAAATCTGCTGCCTA +
Preference number: 2 (lower is better)
Translates to: GCPSLYPGLLHMETARRQTGSKV*FEICCL
Trigger: TAGGCAGCAGATTTCAAATCAAACTTTACTACCTGT...CTGCCTTCTGGCTGTTTCCATATGCAACAGCCCAGGGTATAGACTTGGGCAGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR TCA 90 bp TACTGGCTAGGTAAAGCTCTCCACACACAAAGCCATCTGTTTACCACGTGGGTAGAGTTTGCTATGAACTaGCCTGCCTTGCATGAGACT +
Preference number: 2 (lower is better)
Translates to: YWLGKALHTQSHLFTTWVEFAMN*PALHET
Trigger: AGTCTCATGCAAGGCAGGTCAGTTCATAGCAAACTC...TACCCACGTGGTAAACAGATGGCTTTGTGTGTGGAGAGCTTTACCTAGCCAGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR TCA 90 bp CAGCTGTACTGGCTAGGTAAAGCTCTCCACACACAAAGCCATCTGTTTACCACGAAAGTGGTATGTGTCTaGGGTGGAAAAGAGCCTCTT +
Preference number: 2 (lower is better)
Translates to: QLYWLGKALHTQSHLFTTKVVCV*GGKEPL
Trigger: AAGAGGCTCTTTTCCACCTCAGACACATACCACTTT...CGTGGTAAACAGATGGCTTTGTGTGTGGAGAGCTTTACCTAGCCAGTACAGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR TCA 90 bp AGAACACAAGAGAACAGAGGCAGAGTTGCAAATGAGCTGAGGGAATTCAGATTGAAGGTGAGGAGATCCTaGGGTGGGAACAACAGGCTA +
Preference number: 2 (lower is better)
Translates to: RTQENRGRVANELREFRLKVRRS*GGNNRL
Trigger: TAGCCTGTTGTTCCCACCTCAGGATCTCCTCACCTT...CAATCTGAATTCCCTCAGCTCATTTGCAACTCTGCCTCTGTTCTCTTGTGTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp CCTTCAAATGAAGTTGGAAGGAGATGGGAGTGGATCTGGGAGGCCAGGGAATGCAGGAAAGATTATTCCTaGATGCATATTCCACTGGGA +
Preference number: 2 (lower is better)
Translates to: PSNEVGRRWEWIWEARECRKDYS*MHIPLG
Trigger: TCCCAGTGGAATATGCATCCAGGAATAATCTTTCCT...GCATTCCCTGGCCTCCCAGATCCACTCCCATCTCCTTCCAACTTCATTTGAAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp TCTCCACACACAAAGCCATCTGTTTACCACGTGGGTAGTCTTCTTCGCCTGAATCCCAAGTCTATACCCTaGGCTGTTGCATATGGAAAC +
Preference number: 2 (lower is better)
Translates to: SPHTKPSVYHVGSLLRLNPKSIP*AVAYGN
Trigger: GTTTCCATATGCAACAGCCCAGGGTATAGACTTGGG...ATTCAGGCGAAGAAGACTACCCACGTGGTAAACAGATGGCTTTGTGTGTGGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp GTACTAGGTGTATATGGAAGCCAGAACTTTCCAACATCTGCTGTAATGCTGCATGAAGTTGGAAGGAGATaGGAGTGGATCTGGGAGGCC +
Preference number: 2 (lower is better)
Translates to: VLGVYGSQNFPTSAVMLHEVGRR*EWIWEA
Trigger: GGCCTCCCAGATCCACTCCCATCTCCTTCCAACTTC...ATGCAGCATTACAGCAGATGTTGGAAAGTTCTGGCTTCCATATACACCTAGTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp CAGCTGTACTGGCTAGGTAAAGCTCTCCACACACAAAGCCATCTGTTTACCACGTGTCCTGTTGGCACTTaGCCTTCATACTTTGGTTCT +
Preference number: 2 (lower is better)
Translates to: QLYWLGKALHTQSHLFTTCPVGT*PSYFGS
Trigger: AGAACCAAAGTATGAAGGCCAAGTGCCAACAGGACA...CGTGGTAAACAGATGGCTTTGTGTGTGGAGAGCTTTACCTAGCCAGTACAGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CAA 90 bp GGTGTTGCTAGGTGGGAAAAGTTACTGCAGATCTTTGTTACATGGTaGTCCGACTGTGTCCTTGGCACAAGCAGTCTTCTTCTCCATAGT +
Preference number: 2 (lower is better)
Translates to: GVARWEKLLQIFVTW*SDCVLGTSSLLLHS
Trigger: ACTATGGAGAAGAAGACTGCTTGTGCCAAGGACACAGTCGGACAACCATGTAACAAAGATCTGCAGTAACTTTTCCCACCTAGCAACACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130414.8
3UTR-3UTR TCA 90 bp TACTGGCTAGGTAAAGCTCTCCACACACAAAGCCATCTGTTTACCACGTGGGTAAGGCAGAGTTGCAAATaGGCTGAGGGAATTCAGATT +
Preference number: 2 (lower is better)
Translates to: YWLGKALHTQSHLFTTWVRQSCK*AEGIQI
Trigger: AATCTGAATTCCCTCAGCTCATTTGCAACTCTGCCT...TACCCACGTGGTAAACAGATGGCTTTGTGTGTGGAGAGCTTTACCTAGCCAGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR GCA 90 bp TACTGGCTAGGTAAAGCTCTCCACACACAAAGCCATCTGTTTACCACGTGGGTATCTTCTTCGCCTGAATaGCCCCACAAAGCTATCTTT +
Preference number: 2 (lower is better)
Translates to: YWLGKALHTQSHLFTTWVSSSPE*PHKAIF
Trigger: AAAGATAGCTTTGTGGGGGCATTCAGGCGAAGAAGA...TACCCACGTGGTAAACAGATGGCTTTGTGTGTGGAGAGCTTTACCTAGCCAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp CCTTCAAATGAAGTTGGAAGGAGATGGGAGTGGATCTGGGAGGCCAGGGAATGCAGCCTAGTATTTTCTTaGGCCATTACTTGGAAAACT +
Preference number: 2 (lower is better)
Translates to: PSNEVGRRWEWIWEARECSLVFS*AITWKT
Trigger: AGTTTTCCAAGTAATGGCCCAAGAAAATACTAGGCT...GCATTCCCTGGCCTCCCAGATCCACTCCCATCTCCTTCCAACTTCATTTGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp GTACTAGGTGTATATGGAAGCCAGAACTTTCCAACATCTGCTGTAATGCTGCATCTGGGCTGTTGCATATaGAAACAGCCAGAAGGCAGC +
Preference number: 2 (lower is better)
Translates to: VLGVYGSQNFPTSAVMLHLGCCI*KQPEGS
Trigger: GCTGCCTTCTGGCTGTTTCCATATGCAACAGCCCAG...ATGCAGCATTACAGCAGATGTTGGAAAGTTCTGGCTTCCATATACACCTAGTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CAA 90 bp AACCCTTCAGATTCACCACATCCAATTTGGAAAGAGGGCCAGTTATaGCTGTGGTTACAGCTGAGTATTTCTTCACTGGAGTCATCTGGG +
Preference number: 2 (lower is better)
Translates to: NPSDSPHPIWKEGQL*LWLQLSISSLESSG
Trigger: CCCAGATGACTCCAGTGAAGAAATACTCAGCTGTAACCACAGCAATAACTGGCCCTCTTTCCAAATTGGATGTGGTGAATCTGAAGGGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR TCA 90 bp GCCACTTACTATGCCACTTGCTCTCTTCCACAGTCCAACTTGGCTTTTGACAGTCCTGAAGAAAATAGATaGACCCTTCAGATTCACCAC +
Preference number: 2 (lower is better)
Translates to: ATYYATCSLPQSNLAFDSPEENR*TLQIHH
Trigger: GTGGTGAATCTGAAGGGTTCATCTATTTTCTTCAGG...ACTGTCAAAAGCCAAGTTGGACTGTGGAAGAGAGCAAGTGGCATAGTAAGTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR TCA 90 bp AGATTATTCCTGGATGCATATTCCACTGGGAGGCAAGTGTCCCTAACAAAGATGACAGTGAGTTTGCTATaGACTGACCTGCCTTGCATG +
Preference number: 2 (lower is better)
Translates to: RLFLDAYSTGRQVSLTKMTVSLL*TDLPCM
Trigger: CATGCAAGGCAGGTCAGTTCATAGCAAACTCACTGT...CATCTTTGTTAGGGACACTTGCCTCCCAGTGGAATATGCATCCAGGAATAATCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR GCA 90 bp TACTGGCTAGGTAAAGCTCTCCACACACAAAGCCATCTGTTTACCACGTGGGTAAAAGCCCAAAAGCTGTaGCTTTTTCCAGTGTCATCT +
Preference number: 2 (lower is better)
Translates to: YWLGKALHTQSHLFTTWVKAQKL*LFPVSS
Trigger: AGATGACACTGGAAAAAGGCACAGCTTTTGGGCTTT...TACCCACGTGGTAAACAGATGGCTTTGTGTGTGGAGAGCTTTACCTAGCCAGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp CTGCAGATCTTTGTTACATGGTTGTCCGACTGTGTCCTTGGCACAAGCAGTCTTCAGATCTTTGTTACATaGTTGTCCGACTGTGTCCTT +
Preference number: 2 (lower is better)
Translates to: LQIFVTWLSDCVLGTSSLQIFVT*LSDCVL
Trigger: AAGGACACAGTCGGACAACCATGTAACAAAGATCTG...AAGACTGCTTGTGCCAAGGACACAGTCGGACAACCATGTAACAAAGATCTGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp TGCAGATCTTTGTTACATGGTTGTCCGACTGTGTCCTTGGCACAAGCAGTCTTCGGCCAGTTATTGCTGTaGTTACAGCTGAGTATTTCT +
Preference number: 2 (lower is better)
Translates to: CRSLLHGCPTVSLAQAVFGQLLL*LQLSIS
Trigger: AGAAATACTCAGCTGTAACCACAGCAATAACTGGCC...GAAGACTGCTTGTGCCAAGGACACAGTCGGACAACCATGTAACAAAGATCTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp CTGCAGATCTTTGTTACATGGTTGTCCGACTGTGTCCTTGGCACAAGCAGTCTTTCACCACATCCAATTTaGAAAGAGGGCCAGTTATTG +
Preference number: 2 (lower is better)
Translates to: LQIFVTWLSDCVLGTSSLSPHPI*KEGQLL
Trigger: CAATAACTGGCCCTCTTTCCAAATTGGATGTGGTGA...AAGACTGCTTGTGCCAAGGACACAGTCGGACAACCATGTAACAAAGATCTGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp CAGCTGTACTGGCTAGGTAAAGCTCTCCACACACAAAGCCATCTGTTTACCACGAGACTTTTTCCAGGCTaGCTTAGCCTAGTATTTTCT +
Preference number: 2 (lower is better)
Translates to: QLYWLGKALHTQSHLFTTRLFPG*LSLVFS
Trigger: AGAAAATACTAGGCTAAGCCAGCCTGGAAAAAGTCT...CGTGGTAAACAGATGGCTTTGTGTGTGGAGAGCTTTACCTAGCCAGTACAGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp ATACTGATATGGTGGCGGATGTCTGAATGGAAGGGATGGGCAAGGAAGGTGTGTTGTACTAGGTGTATATaGAAGCCAGAACTTTCCAAC +
Preference number: 2 (lower is better)
Translates to: ILIWWRMSEWKGWARKVCCTRCI*KPELSN
Trigger: GTTGGAAAGTTCTGGCTTCCATATACACCTAGTACA...ACACACCTTCCTTGCCCATCCCTTCCATTCAGACATCCGCCACCATATCAGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CAA 90 bp GCTGTGGTTACAGCTGAGTATTTCTTCACTGGAGTCATCTGGGTGTaGCTAGGTGGGAAAAGTTACTGCAGATCTTTGTTACATGGTTGT +
Preference number: 2 (lower is better)
Translates to: AVVTAEYFFTGVIWV*LGGKSYCRSLLHGC
Trigger: ACAACCATGTAACAAAGATCTGCAGTAACTTTTCCCACCTAGCAACACCCAGATGACTCCAGTGAAGAAATACTCAGCTGTAACCACAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CAA 90 bp CACATCTGCCTGGATCTAGTGACAATATTTCTGCTCCCTGTCCTGTaGGCACTTGGCCTTCATACTTTGGTTCTAAATACTGATATGGTG +
Preference number: 2 (lower is better)
Translates to: HICLDLVTIFLLPVL*ALGLHTLVLNTDMV
Trigger: CACCATATCAGTATTTAGAACCAAAGTATGAAGGCCAAGTGCCAACAGGACAGGGAGCAGAAATATTGTCACTAGATCCAGGCAGATGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR TCA 90 bp TTGGCCTTCATTCTTGTAGGTATTTCCATTCCCCAAGTGCTGCAAAAGTGGTATGAGTTTGCTATGAACTaGCCTGCCTTGCATGAGACT +
Preference number: 2 (lower is better)
Translates to: LAFILVGISIPQVLQKWYEFAMN*PALHET
Trigger: AGTCTCATGCAAGGCAGGTCAGTTCATAGCAAACTC...ATACCACTTTTGCAGCACTTGGGGAATGGAAATACCTACAAGAATGAAGGCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR GCA 90 bp TACTGGCTAGGTAAAGCTCTCCACACACAAAGCCATCTGTTTACCACGTGGGTATGCCTGATAATCTTTTaGTGGAGCCATTCTAGTTTC +
Preference number: 2 (lower is better)
Translates to: YWLGKALHTQSHLFTTWVCLIIF*WSHSSF
Trigger: GAAACTAGAATGGCTCCAGCAAAAGATTATCAGGCA...TACCCACGTGGTAAACAGATGGCTTTGTGTGTGGAGAGCTTTACCTAGCCAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp TACTGGCTAGGTAAAGCTCTCCACACACAAAGCCATCTGTTTACCACGTGGGTATCTTGGGCCATTACTTaGAAAACTGGAACACTTTCT +
Preference number: 2 (lower is better)
Translates to: YWLGKALHTQSHLFTTWVSWAIT*KTGTLS
Trigger: AGAAAGTGTTCCAGTTTTCCAAGTAATGGCCCAAGA...TACCCACGTGGTAAACAGATGGCTTTGTGTGTGGAGAGCTTTACCTAGCCAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CAA 90 bp AAAAGTTACTGCAGATCTTTGTTACATGGTTGTCCGACTGTGTCCTaGGCACAAGCAGTCTTCTTCTCCATAGTCATCGTTTCTCCATCA +
Preference number: 2 (lower is better)
Translates to: KSYCRSLLHGCPTVS*AQAVFFSIVIVSPS
Trigger: TGATGGAGAAACGATGACTATGGAGAAGAAGACTGCTTGTGCCAAGGACACAGTCGGACAACCATGTAACAAAGATCTGCAGTAACTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130414.8
3UTR-3UTR TCA 90 bp TTGGCCTTCATTCTTGTAGGTATTTCCATTCCCCAAGTGCTGCAAAAGTGGTATTGCTGTGGTTACAGCTaGGTATTTCTTCACTGGAGT +
Preference number: 2 (lower is better)
Translates to: LAFILVGISIPQVLQKWYCCGYS*VFLHWS
Trigger: ACTCCAGTGAAGAAATACTCAGCTGTAACCACAGCA...ATACCACTTTTGCAGCACTTGGGGAATGGAAATACCTACAAGAATGAAGGCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR TCA 90 bp GTACTAGGTGTATATGGAAGCCAGAACTTTCCAACATCTGCTGTAATGCTGCATAAAGTGGTATGTGTCTaGGGTGGAAAAGAGCCTCTT +
Preference number: 2 (lower is better)
Translates to: VLGVYGSQNFPTSAVMLHKVVCV*GGKEPL
Trigger: AAGAGGCTCTTTTCCACCTCAGACACATACCACTTT...ATGCAGCATTACAGCAGATGTTGGAAAGTTCTGGCTTCCATATACACCTAGTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR GCA 90 bp GTACTAGGTGTATATGGAAGCCAGAACTTTCCAACATCTGCTGTAATGCTGCATTCAAGCCACTTACTATaGCACTTGCTCTCTTCCACA +
Preference number: 2 (lower is better)
Translates to: VLGVYGSQNFPTSAVMLHSSHLL*HLLSST
Trigger: TGTGGAAGAGAGCAAGTGGCATAGTAAGTGGCTTGA...ATGCAGCATTACAGCAGATGTTGGAAAGTTCTGGCTTCCATATACACCTAGTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp CATCTCTCAGTGATCTTATCTCATAACACACACTTCTGTGTCCAGGAAAGATTAGTCCGACTGTGTCCTTaGCACAAGCAGTCTTCTTCT +
Preference number: 2 (lower is better)
Translates to: HLSVILSHNTHFCVQERLVRLCP*HKQSSS
Trigger: AGAAGAAGACTGCTTGTGCCAAGGACACAGTCGGAC...TAATCTTTCCTGGACACAGAAGTGTGTGTTATGAGATAAGATCACTGAGAGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp TCTGCTGTAATGCTGCATCCCTCGGGTGCAACCTACACTGAAAAACAAAGTGAAGAACACTTTCTGGGGTaGAATTATTCTCTGAAGACA +
Preference number: 2 (lower is better)
Translates to: SAVMLHPSGATYTEKQSEEHFLG*NYSLKT
Trigger: TGTCTTCAGAGAATAATTCCACCCCAGAAAGTGTTC...TTCACTTTGTTTTTCAGTGTAGGTTGCACCCGAGGGATGCAGCATTACAGCAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp TCTTATCTCATAACACACACTTCTGTGTCCAGGAAAGATTATTCCTGGATGCATACTCTGCCATGTGCATaGGAAGGGACAGTGAGTTTG +
Preference number: 2 (lower is better)
Translates to: SYLITHTSVSRKDYSWMHTLPCA*EGTVSL
Trigger: CAAACTCACTGTCCCTTCCCATGCACATGGCAGAGT...ATGCATCCAGGAATAATCTTTCCTGGACACAGAAGTGTGTGTTATGAGATAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp TCTGCTGTAATGCTGCATCCCTCGGGTGCAACCTACACTGAAAAACAAAGTGAAAGGAAAGATTATTCCTaGATGCATATTCCACTGGGA +
Preference number: 2 (lower is better)
Translates to: SAVMLHPSGATYTEKQSERKDYS*MHIPLG
Trigger: TCCCAGTGGAATATGCATCCAGGAATAATCTTTCCT...TTCACTTTGTTTTTCAGTGTAGGTTGCACCCGAGGGATGCAGCATTACAGCAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp ATACTGATATGGTGGCGGATGTCTGAATGGAAGGGATGGGCAAGGAAGGTGTGTCTGATAATCTTTTGCTaGAGCCATTCTAGTTTCTTT +
Preference number: 2 (lower is better)
Translates to: ILIWWRMSEWKGWARKVCLIIFC*SHSSFF
Trigger: AAAGAAACTAGAATGGCTCCAGCAAAAGATTATCAG...ACACACCTTCCTTGCCCATCCCTTCCATTCAGACATCCGCCACCATATCAGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp CAGCTGTACTGGCTAGGTAAAGCTCTCCACACACAAAGCCATCTGTTTACCACGCAAAGCTTAATAAGATaGCTGCCTGATAATCTTTTG +
Preference number: 2 (lower is better)
Translates to: QLYWLGKALHTQSHLFTTQSLIR*LPDNLL
Trigger: CAAAAGATTATCAGGCAGCCATCTTATTAAGCTTTG...CGTGGTAAACAGATGGCTTTGTGTGTGGAGAGCTTTACCTAGCCAGTACAGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CAA 90 bp CACCTGAAGAAAATAGATGAACCCTTCAGATTCACCACATCCAATTaGGAAAGAGGGCCAGTTATTGCTGTGGTTACAGCTGAGTATTTC +
Preference number: 2 (lower is better)
Translates to: HLKKIDEPFRFTTSN*ERGPVIAVVTAEYF
Trigger: GAAATACTCAGCTGTAACCACAGCAATAACTGGCCCTCTTTCCAAATTGGATGTGGTGAATCTGAAGGGTTCATCTATTTTCTTCAGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR TCA 90 bp TTCCAGTGTCATCTCTCAGTGATCTTATCTCATAACACACACTTCTGTGTCCAGGGTGGAATTATTCTCTaGAGACAGTCATTAGCTCAC +
Preference number: 2 (lower is better)
Translates to: FQCHLSVILSHNTHFCVQGGIIL*RQSLAH
Trigger: GTGAGCTAATGACTGTCTTCAGAGAATAATTCCACC...CTGGACACAGAAGTGTGTGTTATGAGATAAGATCACTGAGAGATGACACTGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp ACATCCAATTTGGAAAGAGGGCCAGTTATTGCTGTGGTTACAGCTGAGTATTTCGGCCAGTTATTGCTGTaGTTACAGCTGAGTATTTCT +
Preference number: 2 (lower is better)
Translates to: TSNLERGPVIAVVTAEYFGQLLL*LQLSIS
Trigger: AGAAATACTCAGCTGTAACCACAGCAATAACTGGCC...GAAATACTCAGCTGTAACCACAGCAATAACTGGCCCTCTTTCCAAATTGGATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp TCTCCACACACAAAGCCATCTGTTTACCACGTGGGTAGTCTTCTTCGCCTGAATCAAAGCTTAATAAGATaGCTGCCTGATAATCTTTTG +
Preference number: 2 (lower is better)
Translates to: SPHTKPSVYHVGSLLRLNQSLIR*LPDNLL
Trigger: CAAAAGATTATCAGGCAGCCATCTTATTAAGCTTTG...ATTCAGGCGAAGAAGACTACCCACGTGGTAAACAGATGGCTTTGTGTGTGGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR TCA 90 bp CATCTCTCAGTGATCTTATCTCATAACACACACTTCTGTGTCCAGGAAAGATTATGCTGTGGTTACAGCTaGGTATTTCTTCACTGGAGT +
Preference number: 2 (lower is better)
Translates to: HLSVILSHNTHFCVQERLCCGYS*VFLHWS
Trigger: ACTCCAGTGAAGAAATACTCAGCTGTAACCACAGCA...TAATCTTTCCTGGACACAGAAGTGTGTGTTATGAGATAAGATCACTGAGAGATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp TTGGCCTTCATTCTTGTAGGTATTTCCATTCCCCAAGTGCTGCAAAAGTGGTATTCTTGGGCCATTACTTaGAAAACTGGAACACTTTCT +
Preference number: 2 (lower is better)
Translates to: LAFILVGISIPQVLQKWYSWAIT*KTGTLS
Trigger: AGAAAGTGTTCCAGTTTTCCAAGTAATGGCCCAAGA...ATACCACTTTTGCAGCACTTGGGGAATGGAAATACCTACAAGAATGAAGGCCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp CATCTCTCAGTGATCTTATCTCATAACACACACTTCTGTGTCCAGGAAAGATTACATTACTTGGAAAACTaGAACACTTTCTGGGGTGGA +
Preference number: 2 (lower is better)
Translates to: HLSVILSHNTHFCVQERLHYLEN*NTFWGG
Trigger: TCCACCCCAGAAAGTGTTCCAGTTTTCCAAGTAATG...TAATCTTTCCTGGACACAGAAGTGTGTGTTATGAGATAAGATCACTGAGAGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp ATCTTATCTCATAACACACACTTCTGTGTCCAGGAAAGATTATTCCTGGATGCAGAACACTTTCTGGGGTaGAATTATTCTCTGAAGACA +
Preference number: 2 (lower is better)
Translates to: ILSHNTHFCVQERLFLDAEHFLG*NYSLKT
Trigger: TGTCTTCAGAGAATAATTCCACCCCAGAAAGTGTTC...TGCATCCAGGAATAATCTTTCCTGGACACAGAAGTGTGTGTTATGAGATAAGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CCA 90 bp ATCTTATCTCATAACACACACTTCTGTGTCCAGGAAAGATTATTCCTGGATGCAAGACTTTTTCCAGGCTaGCTTAGCCTAGTATTTTCT +
Preference number: 2 (lower is better)
Translates to: ILSHNTHFCVQERLFLDARLFPG*LSLVFS
Trigger: AGAAAATACTAGGCTAAGCCAGCCTGGAAAAAGTCT...TGCATCCAGGAATAATCTTTCCTGGACACAGAAGTGTGTGTTATGAGATAAGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR TCA 72 bp GCAGTAGACTGGTCCAGGAGGATGCTGGGTAATGGATaGGCTACCCTGGGGAGAGCCCTTGGCCTTCATTCT +
Preference number: 3 (lower is better)
Translates to: AVDWSRRMLGNG*ATLGRALGLHS
Trigger: AGAATGAAGGCCAAGGGCTCTCCCCAGGGTAGCTCATCCATTACCCAGCATCCTCCTGGACCAGTCTACTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CCA 72 bp GGTCCAGGAGGATGCTGGGTAATGGATGAGCTACCCTaGGGAGAGCCCTTGGCCTTCATTCTTGTAGGTATT +
Preference number: 3 (lower is better)
Translates to: GPGGCWVMDELP*GEPLAFILVGI
Trigger: AATACCTACAAGAATGAAGGCCAAGGGCTCTCCCCAGGGTAGCTCATCCATTACCCAGCATCCTCCTGGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR TCA 72 bp TTTGGTTTCATTTCCTGGAGGCAGACACAGGAAGGATaGGGTGCACAACTGGCAGTAGACTGGTCCAGGAGG +
Preference number: 3 (lower is better)
Translates to: FGFISWRQTQEG*GAQLAVDWSRR
Trigger: CCTCCTGGACCAGTCTACTGCCAGTTGTGCACCTCATCCTTCCTGTGTCTGCCTCCAGGAAATGAAACCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR GCA 72 bp CTTTCTGTGGCTGCCCAAGTCTATACCCTGGGCTGTTaGATATGGAAACAGCCAGAAGGCAGCTGTGTCAAG +
Preference number: 3 (lower is better)
Translates to: LSVAAQVYTLGC*IWKQPEGSCVK
Trigger: CTTGACACAGCTGCCTTCTGGCTGTTTCCATATGCAACAGCCCAGGGTATAGACTTGGGCAGCCACAGAAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CCA 72 bp GGACCAGTGTCATGCCCATCCAACCAAAGGCCATCTTaGCACTCAAGCCACTTACTATGCCACTTGCTCTCT +
Preference number: 3 (lower is better)
Translates to: GPVSCPSNQRPS*HSSHLLCHLLS
Trigger: AGAGAGCAAGTGGCATAGTAAGTGGCTTGAGTGCCAAGATGGCCTTTGGTTGGATGGGCATGACACTGGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CCA 72 bp AAGAGCCTCTTTCTGTGGCTGCCCAAGTCTATACCCTaGGCTGTTGCATATGGAAACAGCCAGAAGGCAGCT +
Preference number: 3 (lower is better)
Translates to: KSLFLWLPKSIP*AVAYGNSQKAA
Trigger: AGCTGCCTTCTGGCTGTTTCCATATGCAACAGCCCAGGGTATAGACTTGGGCAGCCACAGAAAGAGGCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CAA 90 bp GGCACTCAAGCCACTTACTATGCCACTTGCTCTCTTCCACAGTCCAACTTGGCTTGTCCGACTGTGTCCTaGGCACAAGCAGTCTTCTTC +
Preference number: 3 (lower is better)
Translates to: GTQATYYATCSLPQSNLACPTVS*AQAVFF
Trigger: GAAGAAGACTGCTTGTGCCAAGGACACAGTCGGACA...AGCCAAGTTGGACTGTGGAAGAGAGCAAGTGGCATAGTAAGTGGCTTGAGTGCC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CAA 90 bp CTTTCTGTGGCTGCCCAAGTCTATACCCTGGGCTGTTGCATATGGAAACAGCCATGTCCGACTGTGTCCTaGGCACAAGCAGTCTTCTTC +
Preference number: 3 (lower is better)
Translates to: LSVAAQVYTLGCCIWKQPCPTVS*AQAVFF
Trigger: GAAGAAGACTGCTTGTGCCAAGGACACAGTCGGACA...TGGCTGTTTCCATATGCAACAGCCCAGGGTATAGACTTGGGCAGCCACAGAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CAA 90 bp GGCTGCCCAAGTCTATACCCTGGGCTGTTGCATATGGAAACAGCCAGAAGGCAGCTAGAGCATATCACCTaGGGCCACCTGAAGAAAATA +
Preference number: 3 (lower is better)
Translates to: GCPSLYPGLLHMETARRQLEHIT*GHLKKI
Trigger: TATTTTCTTCAGGTGGCCCAAGGTGATATGCTCTAG...CTGCCTTCTGGCTGTTTCCATATGCAACAGCCCAGGGTATAGACTTGGGCAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR TCA 72 bp CTGCCATGTGCATGGGAAGGGACAGTGAGTTTGCTATaGACTGACCTGCCTTGCATGAGACTTTTTCCAGGC +
Preference number: 3 (lower is better)
Translates to: LPCAWEGTVSLL*TDLPCMRLFPG
Trigger: GCCTGGAAAAAGTCTCATGCAAGGCAGGTCAGTTCATAGCAAACTCACTGTCCCTTCCCATGCACATGGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CCA 72 bp GGCTGCTCTCCAGGATGGTTAACTGCAACCCAACTCTaGGTTCTGTTACAGAGACTGGAGGGGAATGGAATT +
Preference number: 3 (lower is better)
Translates to: GCSPGWLTATQL*VLLQRLEGNGI
Trigger: AATTCCATTCCCCTCCAGTCTCTGTAACAGAACCCAGAGTTGGGTTGCAGTTAACCATCCTGGAGAGCAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CAA 90 bp GGACCAGTGTCATGCCCATCCAACCAAAGGCCATCTTGGCACTCAAGCCACTTACTAGAGCATATCACCTaGGGCCACCTGAAGAAAATA +
Preference number: 3 (lower is better)
Translates to: GPVSCPSNQRPSWHSSHLLEHIT*GHLKKI
Trigger: TATTTTCTTCAGGTGGCCCAAGGTGATATGCTCTAG...TAAGTGGCTTGAGTGCCAAGATGGCCTTTGGTTGGATGGGCATGACACTGGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CAA 90 bp TACTGGCTAGGTAAAGCTCTCCACACACAAAGCCATCTGTTTACCACGTGGGTACAACCTGAGCTCCCATaGCCAAGGACATGTCAAAGC +
Preference number: 3 (lower is better)
Translates to: YWLGKALHTQSHLFTTWVQPELP*PRTCQS
Trigger: GCTTTGACATGTCCTTGGCAATGGGAGCTCAGGTTG...TACCCACGTGGTAAACAGATGGCTTTGTGTGTGGAGAGCTTTACCTAGCCAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR TCA 72 bp TCCAGGGCATCCAAATCAAATGACTGCATGTTAGACTaGCCACTGTCAGGACCAGTGTCATGCCCATCCAAC +
Preference number: 3 (lower is better)
Translates to: SRASKSNDCMLD*PLSGPVSCPSN
Trigger: GTTGGATGGGCATGACACTGGTCCTGACAGTGGTCAGTCTAACATGCAGTCATTTGATTTGGATGCCCTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR GCA 72 bp ATGTGTCTGAGGTGGAAAAGAGCCTCTTTCTGTGGCTaGCCAAGTCTATACCCTGGGCTGTTGCATATGGAA +
Preference number: 3 (lower is better)
Translates to: MCLRWKRASFCG*PSLYPGLLHME
Trigger: TTCCATATGCAACAGCCCAGGGTATAGACTTGGGCAGCCACAGAAAGAGGCTCTTTTCCACCTCAGACACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CCA 72 bp TGGTATGTGTCTGAGGTGGAAAAGAGCCTCTTTCTGTaGCTGCCCAAGTCTATACCCTGGGCTGTTGCATAT +
Preference number: 3 (lower is better)
Translates to: WYVSEVEKSLFL*LPKSIPWAVAY
Trigger: ATATGCAACAGCCCAGGGTATAGACTTGGGCAGCCACAGAAAGAGGCTCTTTTCCACCTCAGACACATACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CCA 72 bp TTCAGATTGATAGCCAGCTTCTGGCCACAGCTGTACTaGCTAGGTAAAGCTCTCCACACACAAAGCCATCTG +
Preference number: 3 (lower is better)
Translates to: FRLIASFWPQLY*LGKALHTQSHL
Trigger: CAGATGGCTTTGTGTGTGGAGAGCTTTACCTAGCCAGTACAGCTGTGGCCAGAAGCTGGCTATCAATCTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CCA 72 bp AATGAGCTGAGGGAATTCAGATTGATAGCCAGCTTCTaGCCACAGCTGTACTGGCTAGGTAAAGCTCTCCAC +
Preference number: 3 (lower is better)
Translates to: NELREFRLIASF*PQLYWLGKALH
Trigger: GTGGAGAGCTTTACCTAGCCAGTACAGCTGTGGCCAGAAGCTGGCTATCAATCTGAATTCCCTCAGCTCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR GCA 72 bp GGAGTCATCTGGGTGTTGCTAGGTGGGAAAAGTTACTaGAGATCTTTGTTACATGGTTGTCCGACTGTGTCC +
Preference number: 3 (lower is better)
Translates to: GVIWVLLGGKSY*RSLLHGCPTVS
Trigger: GGACACAGTCGGACAACCATGTAACAAAGATCTGCAGTAACTTTTCCCACCTAGCAACACCCAGATGACTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR GCA 72 bp AACCAAAGGCCATCTTGGCACTCAAGCCACTTACTATaGCACTTGCTCTCTTCCACAGTCCAACTTGGCTTT +
Preference number: 3 (lower is better)
Translates to: NQRPSWHSSHLL*HLLSSTVQLGF
Trigger: AAAGCCAAGTTGGACTGTGGAAGAGAGCAAGTGGCATAGTAAGTGGCTTGAGTGCCAAGATGGCCTTTGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR GCA 72 bp ACTAGGTGTATATGGAAGCCAGAACTTTCCAACATCTaGTGTAATGCTGCATCCCTCGGGTGCAACCTACAC +
Preference number: 3 (lower is better)
Translates to: TRCIWKPELSNI*CNAASLGCNLH
Trigger: GTGTAGGTTGCACCCGAGGGATGCAGCATTACAGCAGATGTTGGAAAGTTCTGGCTTCCATATACACCTAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CAA 90 bp GGCCAGTTATTGCTGTGGTTACAGCTGAGTATTTCTTCACTGGAGTCATCTGGGAAAGAGGGCCAGTTATaGCTGTGGTTACAGCTGAGT +
Preference number: 3 (lower is better)
Translates to: GQLLLWLQLSISSLESSGKEGQL*LWLQLS
Trigger: ACTCAGCTGTAACCACAGCAATAACTGGCCCTCTTT...CCCAGATGACTCCAGTGAAGAAATACTCAGCTGTAACCACAGCAATAACTGGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CAA 90 bp AGAACACAAGAGAACAGAGGCAGAGTTGCAAATGAGCTGAGGGAATTCAGATTGTGGAGGGGAATGGAATaGTGGAACAGTGATGCAGGG +
Preference number: 3 (lower is better)
Translates to: RTQENRGRVANELREFRLWRGME*WNSDAG
Trigger: CCCTGCATCACTGTTCCACAATTCCATTCCCCTCCA...CAATCTGAATTCCCTCAGCTCATTTGCAACTCTGCCTCTGTTCTCTTGTGTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CAA 90 bp TCTGCTGTAATGCTGCATCCCTCGGGTGCAACCTACACTGAAAAACAAAGTGAAATCTTTGTTACATGGTaGTCCGACTGTGTCCTTGGC +
Preference number: 3 (lower is better)
Translates to: SAVMLHPSGATYTEKQSEIFVTW*SDCVLG
Trigger: GCCAAGGACACAGTCGGACAACCATGTAACAAAGAT...TTCACTTTGTTTTTCAGTGTAGGTTGCACCCGAGGGATGCAGCATTACAGCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR TCA 72 bp AACTTTGAACATAGGTTCCCTTTGAACCCCTTCAAATaGAGTTGGAAGGAGATGGGAGTGGATCTGGGAGGC +
Preference number: 3 (lower is better)
Translates to: NFEHRFPLNPFK*SWKEMGVDLGG
Trigger: GCCTCCCAGATCCACTCCCATCTCCTTCCAACTTCATTTGAAGGGGTTCAAAGGGAACCTATGTTCAAAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR TCA 72 bp GTTGGCACTTGGCCTTCATACTTTGGTTCTAAATACTaGTATGGTGGCGGATGTCTGAATGGAAGGGATGGG +
Preference number: 3 (lower is better)
Translates to: VGTWPSYFGSKY*YGGGCLNGRDG
Trigger: CCCATCCCTTCCATTCAGACATCCGCCACCATATCAGTATTTAGAACCAAAGTATGAAGGCCAAGTGCCAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CAA 90 bp GGGCCATTACTTGGAAAACTGGAACACTTTCTGGGGTGGAATTATTCTCTGAAGAAAGAGGGCCAGTTATaGCTGTGGTTACAGCTGAGT +
Preference number: 3 (lower is better)
Translates to: GPLLGKLEHFLGWNYSLKKEGQL*LWLQLS
Trigger: ACTCAGCTGTAACCACAGCAATAACTGGCCCTCTTT...CTTCAGAGAATAATTCCACCCCAGAAAGTGTTCCAGTTTTCCAAGTAATGGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR GCA 72 bp CACACACTTCTGTGTCCAGGAAAGATTATTCCTGGATaGATATTCCACTGGGAGGCAAGTGTCCCTAACAAA +
Preference number: 3 (lower is better)
Translates to: HTLLCPGKIIPG*IFHWEASVPNK
Trigger: TTTGTTAGGGACACTTGCCTCCCAGTGGAATATGCATCCAGGAATAATCTTTCCTGGACACAGAAGTGTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CAA 90 bp GTACTAGGTGTATATGGAAGCCAGAACTTTCCAACATCTGCTGTAATGCTGCATATCTTTGTTACATGGTaGTCCGACTGTGTCCTTGGC +
Preference number: 3 (lower is better)
Translates to: VLGVYGSQNFPTSAVMLHIFVTW*SDCVLG
Trigger: GCCAAGGACACAGTCGGACAACCATGTAACAAAGAT...ATGCAGCATTACAGCAGATGTTGGAAAGTTCTGGCTTCCATATACACCTAGTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CAA 90 bp TCTCCACACACAAAGCCATCTGTTTACCACGTGGGTAGTCTTCTTCGCCTGAATGGGAATGCACTAAGCTaGAATGAATTAACATTGCCT +
Preference number: 3 (lower is better)
Translates to: SPHTKPSVYHVGSLLRLNGNALS*NELTLP
Trigger: AGGCAATGTTAATTCATTCAAGCTTAGTGCATTCCC...ATTCAGGCGAAGAAGACTACCCACGTGGTAAACAGATGGCTTTGTGTGTGGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CAA 90 bp CAGCTGTACTGGCTAGGTAAAGCTCTCCACACACAAAGCCATCTGTTTACCACGCTTGGCCTTCATACTTaGGTTCTAAATACTGATATG +
Preference number: 3 (lower is better)
Translates to: QLYWLGKALHTQSHLFTTLGLHT*VLNTDM
Trigger: CATATCAGTATTTAGAACCAAAGTATGAAGGCCAAG...CGTGGTAAACAGATGGCTTTGTGTGTGGAGAGCTTTACCTAGCCAGTACAGCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR TCA 72 bp ACTTTGGTTCTAAATACTGATATGGTGGCGGATGTCTaGATGGAAGGGATGGGCAAGGAAGGTGTGTTTTTC +
Preference number: 3 (lower is better)
Translates to: TLVLNTDMVADV*MEGMGKEGVFF
Trigger: GAAAAACACACCTTCCTTGCCCATCCCTTCCATTCAGACATCCGCCACCATATCAGTATTTAGAACCAAAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR TCA 72 bp AAACAGAACACAAGAGAACAGAGGCAGAGTTGCAAATaGGCTGAGGGAATTCAGATTGATAGCCAGCTTCTG +
Preference number: 3 (lower is better)
Translates to: KQNTREQRQSCK*AEGIQIDSQLL
Trigger: CAGAAGCTGGCTATCAATCTGAATTCCCTCAGCTCATTTGCAACTCTGCCTCTGTTCTCTTGTGTTCTGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CCA 72 bp CCACATCCAATTTGGAAAGAGGGCCAGTTATTGCTGTaGTTACAGCTGAGTATTTCTTCACTGGAGTCATCT +
Preference number: 3 (lower is better)
Translates to: PHPIWKEGQLLL*LQLSISSLESS
Trigger: AGATGACTCCAGTGAAGAAATACTCAGCTGTAACCACAGCAATAACTGGCCCTCTTTCCAAATTGGATGTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CCA 72 bp GGCGTTGGCAGTAGGATTTCTTGTACTAGGTGTATATaGAAGCCAGAACTTTCCAACATCTGCTGTAATGCT +
Preference number: 3 (lower is better)
Translates to: GVGSRISCTRCI*KPELSNICCNA
Trigger: AGCATTACAGCAGATGTTGGAAAGTTCTGGCTTCCATATACACCTAGTACAAGAAATCCTACTGCCAACGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR TCA 72 bp TTAAATATTCTGTCCTTCCAGGGCATCCAAATCAAATaGCTGCATGTTAGACTGACCACTGTCAGGACCAGT +
Preference number: 3 (lower is better)
Translates to: LNILSFQGIQIK*LHVRLTTVRTS
Trigger: ACTGGTCCTGACAGTGGTCAGTCTAACATGCAGTCATTTGATTTGGATGCCCTGGAAGGACAGAATATTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CCA 72 bp GTATTTCTTCACTGGAGTCATCTGGGTGTTGCTAGGTaGGAAAAGTTACTGCAGATCTTTGTTACATGGTTG +
Preference number: 3 (lower is better)
Translates to: VFLHWSHLGVAR*EKLLQIFVTWL
Trigger: CAACCATGTAACAAAGATCTGCAGTAACTTTTCCCACCTAGCAACACCCAGATGACTCCAGTGAAGAAATAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR-3UTR CAA 90 bp ATCTTATCTCATAACACACACTTCTGTGTCCAGGAAAGATTATTCCTGGATGCAAGTTACTGCAGATCTTaGTTACATGGTTGTCCGACT +
Preference number: 3 (lower is better)
Translates to: ILSHNTHFCVQERLFLDASYCRS*LHGCPT
Trigger: AGTCGGACAACCATGTAACAAAGATCTGCAGTAACT...TGCATCCAGGAATAATCTTTCCTGGACACAGAAGTGTGTGTTATGAGATAAGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CCA 90 bp GACGGCTATGGACAAGTGGATCTGGTCGATGCTCTCGGGAGGGACGTCGAAGACGGCCCCCTGGCTGGGTaGAGAGGGGAATGTCGGGGG +
Preference number: 4 (lower is better)
Translates to: DGYGQVDLVDALGRDVEDGPLAG*RGECRG
Trigger: CCCCCGACATTCCCCTCTCCACCCAGCCAGGGGGCC...GTCTTCGACGTCCCTCCCGAGAGCATCGACCAGATCCACTTGTCCATAGCCGTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000130414.8
CDS-3UTR GCA 90 bp CCTTCAAATGAAGTTGGAAGGAGATGGGAGTGGATCTGGGAGGCCAGGGAATGCTCTTGGCAGCTGTCGTaGTCCAGGGCCCCTCGGGCA +
Preference number: 4 (lower is better)
Translates to: PSNEVGRRWEWIWEARECSWQLS*SRAPRA
Trigger: TGCCCGAGGGGCCCTGGAGCACGACAGCTGCCAAGA...GCATTCCCTGGCCTCCCAGATCCACTCCCATCTCCTTCCAACTTCATTTGAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CCA 90 bp GCCACTTACTATGCCACTTGCTCTCTTCCACAGTCCAACTTGGCTTTTGACAGTCGCGGAGCCGGGGTCTaGCACGGTCCCGCAGGTGGT +
Preference number: 4 (lower is better)
Translates to: ATYYATCSLPQSNLAFDSRGAGV*HGPAGG
Trigger: ACCACCTGCGGGACCGTGCCAGACCCCGGCTCCGCG...ACTGTCAAAAGCCAAGTTGGACTGTGGAAGAGAGCAAGTGGCATAGTAAGTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CCA 90 bp TCTCCACACACAAAGCCATCTGTTTACCACGTGGGTAGTCTTCTTCGCCTGAATCGCGGAGCCGGGGTCTaGCACGGTCCCGCAGGTGGT +
Preference number: 4 (lower is better)
Translates to: SPHTKPSVYHVGSLLRLNRGAGV*HGPAGG
Trigger: ACCACCTGCGGGACCGTGCCAGACCCCGGCTCCGCG...ATTCAGGCGAAGAAGACTACCCACGTGGTAAACAGATGGCTTTGTGTGTGGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CCA 90 bp GGCACTCAAGCCACTTACTATGCCACTTGCTCTCTTCCACAGTCCAACTTGGCTTGCACACGGACGGCATaGGCACAGTTCTCCTGGCCC +
Preference number: 4 (lower is better)
Translates to: GTQATYYATCSLPQSNLACTRTA*AQFSWP
Trigger: GGGCCAGGAGAACTGTGCCCATGCCGTCCGTGTGCA...AGCCAAGTTGGACTGTGGAAGAGAGCAAGTGGCATAGTAAGTGGCTTGAGTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR TCA 90 bp GGCTGCCCAAGTCTATACCCTGGGCTGTTGCATATGGAAACAGCCAGAAGGCAGCCCGCAGGTGGTAGATaGAATCTTGGCAGCTGTCGT +
Preference number: 4 (lower is better)
Translates to: GCPSLYPGLLHMETARRQPAGGR*NLGSCR
Trigger: ACGACAGCTGCCAAGATTTCATCTACCACCTGCGGG...CTGCCTTCTGGCTGTTTCCATATGCAACAGCCCAGGGTATAGACTTGGGCAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR TCA 90 bp GGCTGCCCAAGTCTATACCCTGGGCTGTTGCATATGGAAACAGCCAGAAGGCAGATGGTGTTGGCTCTGTaGCTTGTCGCTGCACACGGA +
Preference number: 4 (lower is better)
Translates to: GCPSLYPGLLHMETARRQMVLAL*LVAAHG
Trigger: TCCGTGTGCAGCGACAAGTCACAGAGCCAACACCAT...CTGCCTTCTGGCTGTTTCCATATGCAACAGCCCAGGGTATAGACTTGGGCAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CCA 90 bp GTCTATACCCTGGGCTGTTGCATATGGAAACAGCCAGAAGGCAGCTGTGTCAAGGCTCACAGAGATATCTaGGTCGCGGAGCCGGGGTCT +
Preference number: 4 (lower is better)
Translates to: VYTLGCCIWKQPEGSCVKAHRDI*VAEPGS
Trigger: AGACCCCGGCTCCGCGACCCAGATATCTCTGTGAGC...CTTGACACAGCTGCCTTCTGGCTGTTTCCATATGCAACAGCCCAGGGTATAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CCA 90 bp GTGTTGCTAGGTGGGAAAAGTTACTGCAGATCTTTGTTACATGGTTGTCCGACTGGCCCCCTGGCTGGGTaGAGAGGGGAATGTCGGGGG +
Preference number: 4 (lower is better)
Translates to: VLLGGKSYCRSLLHGCPTGPLAG*RGECRG
Trigger: CCCCCGACATTCCCCTCTCCACCCAGCCAGGGGGCC...AGTCGGACAACCATGTAACAAAGATCTGCAGTAACTTTTCCCACCTAGCAACAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR TCA 90 bp GGACCAGTGTCATGCCCATCCAACCAAAGGCCATCTTGGCACTCAAGCCACTTAATGGTGTTGGCTCTGTaGCTTGTCGCTGCACACGGA +
Preference number: 4 (lower is better)
Translates to: GPVSCPSNQRPSWHSSHLMVLAL*LVAAHG
Trigger: TCCGTGTGCAGCGACAAGTCACAGAGCCAACACCAT...TAAGTGGCTTGAGTGCCAAGATGGCCTTTGGTTGGATGGGCATGACACTGGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR TCA 90 bp GGACCAGTGTCATGCCCATCCAACCAAAGGCCATCTTGGCACTCAAGCCACTTACCGGGTTCGACAGGTTaGGCTGTCTTCGGATTGAGT +
Preference number: 4 (lower is better)
Translates to: GPVSCPSNQRPSWHSSHLPGSTG*AVFGLS
Trigger: ACTCAATCCGAAGACAGCTCAACCTGTCGAACCCGG...TAAGTGGCTTGAGTGCCAAGATGGCCTTTGGTTGGATGGGCATGACACTGGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS-3UTR TCA 90 bp GGCTGCCCAAGTCTATACCCTGGGCTGTTGCATATGGAAACAGCCAGAAGGCAGCACGGTCATAGTCCATaGCGGCTATGGACAAGTGGA +
Preference number: 4 (lower is better)
Translates to: GCPSLYPGLLHMETARRQHGHSP*RLWTSG
Trigger: TCCACTTGTCCATAGCCGTCATGGACTATGACCGTG...CTGCCTTCTGGCTGTTTCCATATGCAACAGCCCAGGGTATAGACTTGGGCAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS-3UTR GCA 90 bp GGAAAAGTTACTGCAGATCTTTGTTACATGGTTGTCCGACTGTGTCCTTGGCACTCTTGGCAGCTGTCGTaGTCCAGGGCCCCTCGGGCA +
Preference number: 4 (lower is better)
Translates to: GKVTADLCYMVVRLCPWHSWQLS*SRAPRA
Trigger: TGCCCGAGGGGCCCTGGAGCACGACAGCTGCCAAGA...GTGCCAAGGACACAGTCGGACAACCATGTAACAAAGATCTGCAGTAACTTTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CCA 90 bp TGCAGATCTTTGTTACATGGTTGTCCGACTGTGTCCTTGGCACAAGCAGTCTTCTGCACACGGACGGCATaGGCACAGTTCTCCTGGCCC +
Preference number: 4 (lower is better)
Translates to: CRSLLHGCPTVSLAQAVFCTRTA*AQFSWP
Trigger: GGGCCAGGAGAACTGTGCCCATGCCGTCCGTGTGCA...GAAGACTGCTTGTGCCAAGGACACAGTCGGACAACCATGTAACAAAGATCTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CAA 72 bp AGGACCAGTGTCATGCCCATCCAACCAAAGGCCATCTaGGCACTCAAGCCACTTACTATGCCACTTGCTCTC +
Preference number: 4 (lower is better)
Translates to: RTSVMPIQPKAI*ALKPLTMPLAL
Trigger: GAGAGCAAGTGGCATAGTAAGTGGCTTGAGTGCCAAGATGGCCTTTGGTTGGATGGGCATGACACTGGTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR TCA 90 bp ATACTGATATGGTGGCGGATGTCTGAATGGAAGGGATGGGCAAGGAAGGTGTGTGGGCTTCCGAGGATATaGCAGCATCTCACTCCAGTG +
Preference number: 4 (lower is better)
Translates to: ILIWWRMSEWKGWARKVCGLPRI*QHLTPV
Trigger: CACTGGAGTGAGATGCTGTCATATCCTCGGAAGCCC...ACACACCTTCCTTGCCCATCCCTTCCATTCAGACATCCGCCACCATATCAGTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS-3UTR GCA 90 bp AGAACACAAGAGAACAGAGGCAGAGTTGCAAATGAGCTGAGGGAATTCAGATTGCACTCCAGTGGTCTCTaGCCAGCCGCTCAGCCTCGT +
Preference number: 4 (lower is better)
Translates to: RTQENRGRVANELREFRLHSSGL*PAAQPR
Trigger: ACGAGGCTGAGCGGCTGGGCAGAGACCACTGGAGTG...CAATCTGAATTCCCTCAGCTCATTTGCAACTCTGCCTCTGTTCTCTTGTGTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS-3UTR GCA 90 bp CTTTCTGTGGCTGCCCAAGTCTATACCCTGGGCTGTTGCATATGGAAACAGCCATTCTCCATCAGAGAGTaGCAGTGTGCGATGGGCTTC +
Preference number: 4 (lower is better)
Translates to: LSVAAQVYTLGCCIWKQPFSIRE*QCAMGF
Trigger: GAAGCCCATCGCACACTGGCACTCTCTGATGGAGAA...TGGCTGTTTCCATATGCAACAGCCCAGGGTATAGACTTGGGCAGCCACAGAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS-3UTR CCA 90 bp GTACTAGGTGTATATGGAAGCCAGAACTTTCCAACATCTGCTGTAATGCTGCATTGGGCACAGTTCTCCTaGCCCCCTGGCTGGGTGGAG +
Preference number: 4 (lower is better)
Translates to: VLGVYGSQNFPTSAVMLHWAQFS*PPGWVE
Trigger: CTCCACCCAGCCAGGGGGCCAGGAGAACTGTGCCCA...ATGCAGCATTACAGCAGATGTTGGAAAGTTCTGGCTTCCATATACACCTAGTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR GCA 90 bp GGAAAAGTTACTGCAGATCTTTGTTACATGGTTGTCCGACTGTGTCCTTGGCACTCTGTGACTTGTCGCTaGACACGGACGGCATGGGCA +
Preference number: 4 (lower is better)
Translates to: GKVTADLCYMVVRLCPWHSVTCR*TRTAWA
Trigger: TGCCCATGCCGTCCGTGTGCAGCGACAAGTCACAGA...GTGCCAAGGACACAGTCGGACAACCATGTAACAAAGATCTGCAGTAACTTTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR GCA 90 bp GGAAAAGTTACTGCAGATCTTTGTTACATGGTTGTCCGACTGTGTCCTTGGCACAGTGGATCTGGTCGATaGTCTCGGGAGGGACGTCGA +
Preference number: 4 (lower is better)
Translates to: GKVTADLCYMVVRLCPWHSGSGR*SREGRR
Trigger: TCGACGTCCCTCCCGAGAGCATCGACCAGATCCACT...GTGCCAAGGACACAGTCGGACAACCATGTAACAAAGATCTGCAGTAACTTTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS-3UTR CCA 90 bp ATACTGATATGGTGGCGGATGTCTGAATGGAAGGGATGGGCAAGGAAGGTGTGTACGGCTATGGACAAGTaGATCTGGTCGATGCTCTCG +
Preference number: 4 (lower is better)
Translates to: ILIWWRMSEWKGWARKVCTAMDK*IWSMLS
Trigger: CGAGAGCATCGACCAGATCCACTTGTCCATAGCCGT...ACACACCTTCCTTGCCCATCCCTTCCATTCAGACATCCGCCACCATATCAGTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
3UTR CAA 72 bp TCTTTCTGTGGCTGCCCAAGTCTATACCCTGGGCTGTaGCATATGGAAACAGCCAGAAGGCAGCTGTGTCAA +
Preference number: 4 (lower is better)
Translates to: SFCGCPSLYPGL*HMETARRQLCQ
Trigger: TTGACACAGCTGCCTTCTGGCTGTTTCCATATGCAACAGCCCAGGGTATAGACTTGGGCAGCCACAGAAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR TCA 90 bp GGCCAGTTATTGCTGTGGTTACAGCTGAGTATTTCTTCACTGGAGTCATCTGGGCCACATTATCCGAGCTaGTGGTGTTGGCTCTGTGAC +
Preference number: 4 (lower is better)
Translates to: GQLLLWLQLSISSLESSGPHYPS*WCWLCD
Trigger: GTCACAGAGCCAACACCATCAGCTCGGATAATGTGG...CCCAGATGACTCCAGTGAAGAAATACTCAGCTGTAACCACAGCAATAACTGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130414.8
CDS-3UTR GCA 90 bp GCCACTTACTATGCCACTTGCTCTCTTCCACAGTCCAACTTGGCTTTTGACAGTTCCTCGCTGTTCTCCTaGTCGTTTGTCTCTGTGTCG +
Preference number: 4 (lower is better)
Translates to: ATYYATCSLPQSNLAFDSSSLFS*SFVSVS
Trigger: CGACACAGAGACAAACGAGCAGGAGAACAGCGAGGA...ACTGTCAAAAGCCAAGTTGGACTGTGGAAGAGAGCAAGTGGCATAGTAAGTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CCA 90 bp TCTTATCTCATAACACACACTTCTGTGTCCAGGAAAGATTATTCCTGGATGCATTGGGCACAGTTCTCCTaGCCCCCTGGCTGGGTGGAG +
Preference number: 4 (lower is better)
Translates to: SYLITHTSVSRKDYSWMHWAQFS*PPGWVE
Trigger: CTCCACCCAGCCAGGGGGCCAGGAGAACTGTGCCCA...ATGCATCCAGGAATAATCTTTCCTGGACACAGAAGTGTGTGTTATGAGATAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR TCA 90 bp CAAGTCTATACCCTGGGCTGTTGCATATGGAAACAGCCAGAAGGCAGCTGTGTCCTTGACATAAGGATCTaGAGTCCCAGAGAAGTCCTT +
Preference number: 4 (lower is better)
Translates to: QVYTLGCCIWKQPEGSCVLDIRI*SPREVL
Trigger: AAGGACTTCTCTGGGACTTCAGATCCTTATGTCAAG...GACACAGCTGCCTTCTGGCTGTTTCCATATGCAACAGCCCAGGGTATAGACTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS-3UTR TCA 90 bp TCTGCTGTAATGCTGCATCCCTCGGGTGCAACCTACACTGAAAAACAAAGTGAAGCCGTCACACATCAGTaGGACTTTCACGTAGGGATC +
Preference number: 4 (lower is better)
Translates to: SAVMLHPSGATYTEKQSEAVTHQ*DFHVGI
Trigger: GATCCCTACGTGAAAGTCTCACTGATGTGTGACGGC...TTCACTTTGTTTTTCAGTGTAGGTTGCACCCGAGGGATGCAGCATTACAGCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS-3UTR GCA 90 bp TTGGCCTTCATTCTTGTAGGTATTTCCATTCCCCAAGTGCTGCAAAAGTGGTATTCTGTGACTTGTCGCTaGACACGGACGGCATGGGCA +
Preference number: 4 (lower is better)
Translates to: LAFILVGISIPQVLQKWYSVTCR*TRTAWA
Trigger: TGCCCATGCCGTCCGTGTGCAGCGACAAGTCACAGA...ATACCACTTTTGCAGCACTTGGGGAATGGAAATACCTACAAGAATGAAGGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CCA 90 bp GGGCCATTACTTGGAAAACTGGAACACTTTCTGGGGTGGAATTATTCTCTGAAGAAAGGATGCACTCCCTaGGGAAGTCGGCCAAGTCGA +
Preference number: 4 (lower is better)
Translates to: GPLLGKLEHFLGWNYSLKKGCTP*GSRPSR
Trigger: TCGACTTGGCCGACTTCCCCAGGGAGTGCATCCTTT...CTTCAGAGAATAATTCCACCCCAGAAAGTGTTCCAGTTTTCCAAGTAATGGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
3UTR CAA 72 bp ACTTACTATGCCACTTGCTCTCTTCCACAGTCCAACTaGGCTTTTGACAGTGAGGGAGGAGCTTCTCTAGAG +
Preference number: 4 (lower is better)
Translates to: TYYATCSLPQSN*AFDSEGGASLE
Trigger: CTCTAGAGAAGCTCCTCCCTCACTGTCAAAAGCCAAGTTGGACTGTGGAAGAGAGCAAGTGGCATAGTAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CCA 90 bp CATCTCTCAGTGATCTTATCTCATAACACACACTTCTGTGTCCAGGAAAGATTAGCTCACAGAGATATCTaGGTCGCGGAGCCGGGGTCT +
Preference number: 4 (lower is better)
Translates to: HLSVILSHNTHFCVQERLAHRDI*VAEPGS
Trigger: AGACCCCGGCTCCGCGACCCAGATATCTCTGTGAGC...TAATCTTTCCTGGACACAGAAGTGTGTGTTATGAGATAAGATCACTGAGAGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CCA 90 bp GTACTAGGTGTATATGGAAGCCAGAACTTTCCAACATCTGCTGTAATGCTGCATATGGACAAGTGGATCTaGTCGATGCTCTCGGGAGGG +
Preference number: 4 (lower is better)
Translates to: VLGVYGSQNFPTSAVMLHMDKWI*SMLSGG
Trigger: CCCTCCCGAGAGCATCGACCAGATCCACTTGTCCAT...ATGCAGCATTACAGCAGATGTTGGAAAGTTCTGGCTTCCATATACACCTAGTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS-3UTR TCA 90 bp CCTTCAAATGAAGTTGGAAGGAGATGGGAGTGGATCTGGGAGGCCAGGGAATGCAGTCATATTTTAAAATaGAGTTCAGTTTCCCGCAGG +
Preference number: 4 (lower is better)
Translates to: PSNEVGRRWEWIWEARECSHILK*SSVSRR
Trigger: CCTGCGGGAAACTGAACTTCATTTTAAAATATGACT...GCATTCCCTGGCCTCCCAGATCCACTCCCATCTCCTTCCAACTTCATTTGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS-3UTR CCA 90 bp CTGGAAAGGAAGAGGCTACTTGGAAATAATGTTTTAGAATCCCAGAACCTGGGTTGTGGCTTATCTTCATaGAGGAGTCAGGGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: LERKRLLGNNVLESQNLGCGLSS*RSQGRV
Trigger: CACCCTGCCCTGACTCCTCCATGAAGATAAGCCACA...ACCCAGGTTCTGGGATTCTAAAACATTATTTCCAAGTAGCCTCTTCCTTTCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CCA 90 bp CATCTCTCAGTGATCTTATCTCATAACACACACTTCTGTGTCCAGGAAAGATTAAGCATCTCACTCCAGTaGTCTCTGCCCAGCCGCTCA +
Preference number: 4 (lower is better)
Translates to: HLSVILSHNTHFCVQERLSISLQ*SLPSRS
Trigger: TGAGCGGCTGGGCAGAGACCACTGGAGTGAGATGCT...TAATCTTTCCTGGACACAGAAGTGTGTGTTATGAGATAAGATCACTGAGAGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS-3UTR TCA 90 bp TCTTATCTCATAACACACACTTCTGTGTCCAGGAAAGATTATTCCTGGATGCATCCCGCAGGTGGTAGATaGAATCTTGGCAGCTGTCGT +
Preference number: 4 (lower is better)
Translates to: SYLITHTSVSRKDYSWMHPAGGR*NLGSCR
Trigger: ACGACAGCTGCCAAGATTTCATCTACCACCTGCGGG...ATGCATCCAGGAATAATCTTTCCTGGACACAGAAGTGTGTGTTATGAGATAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CAA 72 bp GGGAGTGGATCTGGGAGGCCAGGGAATGCACTAAGCTaGAATGAATTAACATTGCCTTATACAACCAAAGGT +
Preference number: 4 (lower is better)
Translates to: GSGSGRPGNALS*NELTLPYTTKG
Trigger: ACCTTTGGTTGTATAAGGCAATGTTAATTCATTCAAGCTTAGTGCATTCCCTGGCCTCCCAGATCCACTCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR TCA 90 bp ATCTTATCTCATAACACACACTTCTGTGTCCAGGAAAGATTATTCCTGGATGCACTTGGCACACGCCAATaGCCTCATTGTGACCTACAC +
Preference number: 4 (lower is better)
Translates to: ILSHNTHFCVQERLFLDALGTRQ*PHCDLH
Trigger: GTGTAGGTCACAATGAGGTCATTGGCGTGTGCCAAG...TGCATCCAGGAATAATCTTTCCTGGACACAGAAGTGTGTGTTATGAGATAAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS-3UTR GCA 90 bp CTGGAAAGGAAGAGGCTACTTGGAAATAATGTTTTAGAATCCCAGAACCTGGGTCTTGGTTGTTGTCTTTaGTACCAGAGAACAGGCCTC +
Preference number: 4 (lower is better)
Translates to: LERKRLLGNNVLESQNLGLGCCL*YQRTGL
Trigger: GAGGCCTGTTCTCTGGTAGCAAAGACAACAACCAAG...ACCCAGGTTCTGGGATTCTAAAACATTATTTCCAAGTAGCCTCTTCCTTTCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR GCA 90 bp ATCTTATCTCATAACACACACTTCTGTGTCCAGGAAAGATTATTCCTGGATGCATATCCTTCCAAAGGATaGACTCCCTGGGGAAGTCGG +
Preference number: 4 (lower is better)
Translates to: ILSHNTHFCVQERLFLDAYPSKG*TPWGSR
Trigger: CCGACTTCCCCAGGGAGTGCATCCTTTGGAAGGATA...TGCATCCAGGAATAATCTTTCCTGGACACAGAAGTGTGTGTTATGAGATAAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
3UTR CAA 72 bp GATTCACCACATCCAATTTGGAAAGAGGGCCAGTTATaGCTGTGGTTACAGCTGAGTATTTCTTCACTGGAG +
Preference number: 4 (lower is better)
Translates to: DSPHPIWKEGQL*LWLQLSISSLE
Trigger: CTCCAGTGAAGAAATACTCAGCTGTAACCACAGCAATAACTGGCCCTCTTTCCAAATTGGATGTGGTGAATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CAA 72 bp ACAGCTGAGTATTTCTTCACTGGAGTCATCTGGGTGTaGCTAGGTGGGAAAAGTTACTGCAGATCTTTGTTA +
Preference number: 4 (lower is better)
Translates to: TAEYFFTGVIWV*LGGKSYCRSLL
Trigger: TAACAAAGATCTGCAGTAACTTTTCCCACCTAGCAACACCCAGATGACTCCAGTGAAGAAATACTCAGCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CAA 72 bp CTGGATCTAGTGACAATATTTCTGCTCCCTGTCCTGTaGGCACTTGGCCTTCATACTTTGGTTCTAAATACT +
Preference number: 4 (lower is better)
Translates to: LDLVTIFLLPVL*ALGLHTLVLNT
Trigger: AGTATTTAGAACCAAAGTATGAAGGCCAAGTGCCAACAGGACAGGGAGCAGAAATATTGTCACTAGATCCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR TCA 90 bp ACATCCAATTTGGAAAGAGGGCCAGTTATTGCTGTGGTTACAGCTGAGTATTTCGAAGCAAGTAGATCTTaGCATAAGGATCTGAAGTCC +
Preference number: 4 (lower is better)
Translates to: TSNLERGPVIAVVTAEYFEASRS*HKDLKS
Trigger: GGACTTCAGATCCTTATGTCAAGATCTACTTGCTTC...GAAATACTCAGCTGTAACCACAGCAATAACTGGCCCTCTTTCCAAATTGGATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS-3UTR TCA 90 bp CATCTCTCAGTGATCTTATCTCATAACACACACTTCTGTGTCCAGGAAAGATTATCATACACAGAGAAGTaGAGCTTCCGAGCTTCAAGG +
Preference number: 4 (lower is better)
Translates to: HLSVILSHNTHFCVQERLSYTEK*SFRASR
Trigger: CCTTGAAGCTCGGAAGCTTCACTTCTCTGTGTATGA...TAATCTTTCCTGGACACAGAAGTGTGTGTTATGAGATAAGATCACTGAGAGATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS-3UTR GCA 90 bp CATCTCTCAGTGATCTTATCTCATAACACACACTTCTGTGTCCAGGAAAGATTACTTGGTTGTTGTCTTTaGTACCAGAGAACAGGCCTC +
Preference number: 4 (lower is better)
Translates to: HLSVILSHNTHFCVQERLLGCCL*YQRTGL
Trigger: GAGGCCTGTTCTCTGGTAGCAAAGACAACAACCAAG...TAATCTTTCCTGGACACAGAAGTGTGTGTTATGAGATAAGATCACTGAGAGATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CAA 72 bp AAAATAGATGAACCCTTCAGATTCACCACATCCAATTaGGAAAGAGGGCCAGTTATTGCTGTGGTTACAGCT +
Preference number: 4 (lower is better)
Translates to: KIDEPFRFTTSN*ERGPVIAVVTA
Trigger: AGCTGTAACCACAGCAATAACTGGCCCTCTTTCCAAATTGGATGTGGTGAATCTGAAGGGTTCATCTATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
3UTR CAA 72 bp AAGACAGTCATTAGCTCACAGGTAGTAAAGTTTGATTaGAAATCTGCTGCCTATTTAGCACCTGGATATATA +
Preference number: 4 (lower is better)
Translates to: KTVISSQVVKFD*KSAAYLAPGYI
Trigger: TATATATCCAGGTGCTAAATAGGCAGCAGATTTCAAATCAAACTTTACTACCTGTGAGCTAATGACTGTCTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS TCA 90 bp CTGGGTCGCGGAGCCGGGGTCTGGCACGGTCCCGCAGGTGGTAGATaGAATCTTGGCAGCTGTCGTGCTCCAGGGCCCCTCGGGCACAGA +
Preference number: 5 (lower is better)
Translates to: LGRGAGVWHGPAGGR*NLGSCRAPGPLGHR
Trigger: TCTGTGCCCGAGGGGCCCTGGAGCACGACAGCTGCCAAGATTTCATCTACCACCTGCGGGACCGTGCCAGACCCCGGCTCCGCGACCCAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
ENSMUST00000137663.2
CDS CCA 90 bp GCTGATGGTGTTGGCTCTGTGACTTGTCGCTGCACACGGACGGCATaGGCACAGTTCTCCTGGCCCCCTGGCTGGGTGGAGAGGGGAATG +
Preference number: 5 (lower is better)
Translates to: ADGVGSVTCRCTRTA*AQFSWPPGWVERGM
Trigger: CATTCCCCTCTCCACCCAGCCAGGGGGCCAGGAGAACTGTGCCCATGCCGTCCGTGTGCAGCGACAAGTCACAGAGCCAACACCATCAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS TCA 90 bp AGCTCGCCCAGATCCACATTATCCGAGCTGATGGTGTTGGCTCTGTaGCTTGTCGCTGCACACGGACGGCATGGGCACAGTTCTCCTGGC +
Preference number: 5 (lower is better)
Translates to: SSPRSTLSELMVLAL*LVAAHGRHGHSSPG
Trigger: GCCAGGAGAACTGTGCCCATGCCGTCCGTGTGCAGCGACAAGTCACAGAGCCAACACCATCAGCTCGGATAATGTGGATCTGGGCGAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130414.8
CDS TCA 90 bp GCTGTCTTCGGATTGAGTTATGCCGAGCTGATGGTGTTGGCTCTGTaGCTTGTCGCTGCACACGGACGGCATGGGCACAGTTCTCCTGGC +
Preference number: 5 (lower is better)
Translates to: AVFGLSYAELMVLAL*LVAAHGRHGHSSPG
Trigger: GCCAGGAGAACTGTGCCCATGCCGTCCGTGTGCAGCGACAAGTCACAGAGCCAACACCATCAGCTCGGCATAACTCAATCCGAAGACAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS-3UTR CAA 90 bp GTCTATACCCTGGGCTGTTGCATATGGAAACAGCCAGAAGGCAGCTGTGTCAAGTGTTGGCTCTGTGACTaGTCGCTGCACACGGACGGC +
Preference number: 5 (lower is better)
Translates to: VYTLGCCIWKQPEGSCVKCWLCD*SLHTDG
Trigger: GCCGTCCGTGTGCAGCGACAAGTCACAGAGCCAACA...CTTGACACAGCTGCCTTCTGGCTGTTTCCATATGCAACAGCCCAGGGTATAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CAA 90 bp GGACCAGTGTCATGCCCATCCAACCAAAGGCCATCTTGGCACTCAAGCCACTTATCCGGGTTCGACAGGTaGAGCTGTCTTCGGATTGAG +
Preference number: 5 (lower is better)
Translates to: GPVSCPSNQRPSWHSSHLSGFDR*SCLRIE
Trigger: CTCAATCCGAAGACAGCTCAACCTGTCGAACCCGGA...TAAGTGGCTTGAGTGCCAAGATGGCCTTTGGTTGGATGGGCATGACACTGGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS-3UTR CAA 90 bp GGCTGCCCAAGTCTATACCCTGGGCTGTTGCATATGGAAACAGCCAGAAGGCAGTGTTCTCCTGCTCGTTaGTCTCTGTGTCGGTGTAAT +
Preference number: 5 (lower is better)
Translates to: GCPSLYPGLLHMETARRQCSPAR*SLCRCN
Trigger: ATTACACCGACACAGAGACAAACGAGCAGGAGAACA...CTGCCTTCTGGCTGTTTCCATATGCAACAGCCCAGGGTATAGACTTGGGCAGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CAA 90 bp CTGCAGATCTTTGTTACATGGTTGTCCGACTGTGTCCTTGGCACAAGCAGTCTTGTCCCAGAGAAGTCCTaGGCAGGCAGATTGACGGCT +
Preference number: 5 (lower is better)
Translates to: LQIFVTWLSDCVLGTSSLVPEKS*AGRLTA
Trigger: AGCCGTCAATCTGCCTGCCAAGGACTTCTCTGGGAC...AAGACTGCTTGTGCCAAGGACACAGTCGGACAACCATGTAACAAAGATCTGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS-3UTR CAA 90 bp AGAACACAAGAGAACAGAGGCAGAGTTGCAAATGAGCTGAGGGAATTCAGATTGTGTTGGCTCTGTGACTaGTCGCTGCACACGGACGGC +
Preference number: 5 (lower is better)
Translates to: RTQENRGRVANELREFRLCWLCD*SLHTDG
Trigger: GCCGTCCGTGTGCAGCGACAAGTCACAGAGCCAACA...CAATCTGAATTCCCTCAGCTCATTTGCAACTCTGCCTCTGTTCTCTTGTGTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CAA 90 bp GTCTATACCCTGGGCTGTTGCATATGGAAACAGCCAGAAGGCAGCTGTGTCAAGTCTTGGTTGTTGTCTTaGCTACCAGAGAACAGGCCT +
Preference number: 5 (lower is better)
Translates to: VYTLGCCIWKQPEGSCVKSWLLS*LPENRP
Trigger: AGGCCTGTTCTCTGGTAGCAAAGACAACAACCAAGA...CTTGACACAGCTGCCTTCTGGCTGTTTCCATATGCAACAGCCCAGGGTATAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS TCA 90 bp AACTCTGGTTTAATTCTACCAATCCCAGTCAGCTGCTCCTGCCTCTaGAGCTGCTGGATATTAAAGTCCGGGTTCGACAGGTTGAGCTGT +
Preference number: 5 (lower is better)
Translates to: NSGLILPIPVSCSCL*SCWILKSGFDRLSC
Trigger: ACAGCTCAACCTGTCGAACCCGGACTTTAATATCCAGCAGCTTCAGAGGCAGGAGCAGCTGACTGGGATTGGTAGAATTAAACCAGAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS-3UTR CAA 90 bp GTCTATACCCTGGGCTGTTGCATATGGAAACAGCCAGAAGGCAGCTGTGTCAAGTTAAGAGGCTCTTGGTaGTTGTCTTTGCTACCAGAG +
Preference number: 5 (lower is better)
Translates to: VYTLGCCIWKQPEGSCVKLRGSW*LSLLPE
Trigger: CTCTGGTAGCAAAGACAACAACCAAGAGCCTCTTAA...CTTGACACAGCTGCCTTCTGGCTGTTTCCATATGCAACAGCCCAGGGTATAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CAA 90 bp ACCAAAGGTCTCCACCCTTTTAAGACACGACAAGATCTGGCGTTGGCAGTAGGATGTTCTCCTGCTCGTTaGTCTCTGTGTCGGTGTAAT +
Preference number: 5 (lower is better)
Translates to: TKGLHPFKTRQDLALAVGCSPAR*SLCRCN
Trigger: ATTACACCGACACAGAGACAAACGAGCAGGAGAACA...TCCTACTGCCAACGCCAGATCTTGTCGTGTCTTAAAAGGGTGGAGACCTTTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS TCA 90 bp TATGATGGTGATGGTCAGCCTGCCAGCCGTTGGAAGATAGCAGAGTaGAAACATAAGCTCGCCCAGATCCACATTATCGTTGGTGACATA +
Preference number: 5 (lower is better)
Translates to: YDGDGQPASRWKIAE*KHKLAQIHIIVGDI
Trigger: TATGTCACCAACGATAATGTGGATCTGGGCGAGCTTATGTTTTCACTCTGCTATCTTCCAACGGCTGGCAGGCTGACCATCACCATCATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS-3UTR CAA 90 bp GTGTTGCTAGGTGGGAAAAGTTACTGCAGATCTTTGTTACATGGTTGTCCGACTGTGGTAGATGAAATCTaGGCAGCTGTCGTGCTCCAG +
Preference number: 5 (lower is better)
Translates to: VLLGGKSYCRSLLHGCPTVVDEI*AAVVLQ
Trigger: CTGGAGCACGACAGCTGCCAAGATTTCATCTACCAC...AGTCGGACAACCATGTAACAAAGATCTGCAGTAACTTTTCCCACCTAGCAACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CAA 90 bp TGGTATGTGTCTGAGGTGGAAAAGAGCCTCTTTCTGTGGCTGCCCAAGTCTATATCTTGGTTGTTGTCTTaGCTACCAGAGAACAGGCCT +
Preference number: 5 (lower is better)
Translates to: WYVSEVEKSLFLWLPKSISWLLS*LPENRP
Trigger: AGGCCTGTTCTCTGGTAGCAAAGACAACAACCAAGA...TATAGACTTGGGCAGCCACAGAAAGAGGCTCTTTTCCACCTCAGACACATACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CAA 90 bp ACCAAAGGTCTCCACCCTTTTAAGACACGACAAGATCTGGCGTTGGCAGTAGGATTAAGAGGCTCTTGGTaGTTGTCTTTGCTACCAGAG +
Preference number: 5 (lower is better)
Translates to: TKGLHPFKTRQDLALAVGLRGSW*LSLLPE
Trigger: CTCTGGTAGCAAAGACAACAACCAAGAGCCTCTTAA...TCCTACTGCCAACGCCAGATCTTGTCGTGTCTTAAAAGGGTGGAGACCTTTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CAA 90 bp TTCCAGTGTCATCTCTCAGTGATCTTATCTCATAACACACACTTCTGTGTCCAGTCAGCCTGCCAGCCGTaGGAAGATAGCAGAGTGAAA +
Preference number: 5 (lower is better)
Translates to: FQCHLSVILSHNTHFCVQSACQP*EDSRVK
Trigger: TTTCACTCTGCTATCTTCCAACGGCTGGCAGGCTGA...CTGGACACAGAAGTGTGTGTTATGAGATAAGATCACTGAGAGATGACACTGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CAA 90 bp TTGGCCTTCATTCTTGTAGGTATTTCCATTCCCCAAGTGCTGCAAAAGTGGTATTCAGCCTGCCAGCCGTaGGAAGATAGCAGAGTGAAA +
Preference number: 5 (lower is better)
Translates to: LAFILVGISIPQVLQKWYSACQP*EDSRVK
Trigger: TTTCACTCTGCTATCTTCCAACGGCTGGCAGGCTGA...ATACCACTTTTGCAGCACTTGGGGAATGGAAATACCTACAAGAATGAAGGCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CAA 90 bp AGAACACAAGAGAACAGAGGCAGAGTTGCAAATGAGCTGAGGGAATTCAGATTGAGAGGCTCTTGGTTGTaGTCTTTGCTACCAGAGAAC +
Preference number: 5 (lower is better)
Translates to: RTQENRGRVANELREFRLRGSWL*SLLPEN
Trigger: GTTCTCTGGTAGCAAAGACAACAACCAAGAGCCTCT...CAATCTGAATTCCCTCAGCTCATTTGCAACTCTGCCTCTGTTCTCTTGTGTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS-3UTR CAA 90 bp TCAGTGATCTTATCTCATAACACACACTTCTGTGTCCAGGAAAGATTATTCCTGGTGGTAGATGAAATCTaGGCAGCTGTCGTGCTCCAG +
Preference number: 5 (lower is better)
Translates to: SVILSHNTHFCVQERLFLVVDEI*AAVVLQ
Trigger: CTGGAGCACGACAGCTGCCAAGATTTCATCTACCAC...CAGGAATAATCTTTCCTGGACACAGAAGTGTGTGTTATGAGATAAGATCACTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS TCA 72 bp GGAGCCGGGGTCTGGCACGGTCCCGCAGGTGGTAGATaGAATCTTGGCAGCTGTCGTGCTCCAGGGCCCCTC +
Preference number: 6 (lower is better)
Translates to: GAGVWHGPAGGR*NLGSCRAPGPL
Trigger: GAGGGGCCCTGGAGCACGACAGCTGCCAAGATTTCATCTACCACCTGCGGGACCGTGCCAGACCCCGGCTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
ENSMUST00000137663.2
CDS CCA 72 bp GTTGGCTCTGTGACTTGTCGCTGCACACGGACGGCATaGGCACAGTTCTCCTGGCCCCCTGGCTGGGTGGAG +
Preference number: 6 (lower is better)
Translates to: VGSVTCRCTRTA*AQFSWPPGWVE
Trigger: CTCCACCCAGCCAGGGGGCCAGGAGAACTGTGCCCATGCCGTCCGTGTGCAGCGACAAGTCACAGAGCCAAC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
CDS CAA 72 bp GGGTCTGGCACGGTCCCGCAGGTGGTAGATGAAATCTaGGCAGCTGTCGTGCTCCAGGGCCCCTCGGGCACA +
Preference number: 6 (lower is better)
Translates to: GSGTVPQVVDEI*AAVVLQGPSGT
Trigger: TGTGCCCGAGGGGCCCTGGAGCACGACAGCTGCCAAGATTTCATCTACCACCTGCGGGACCGTGCCAGACCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073459.12
ENSMUST00000130414.8
ENSMUST00000137663.2
CDS GCA 72 bp TGCCGAGCTGATGGTGTTGGCTCTGTGACTTGTCGCTaGACACGGACGGCATGGGCACAGTTCTCCTGGCCC +
Preference number: 6 (lower is better)
Translates to: CRADGVGSVTCR*TRTAWAQFSWP
Trigger: GGGCCAGGAGAACTGTGCCCATGCCGTCCGTGTGCAGCGACAAGTCACAGAGCCAACACCATCAGCTCGGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS GCA 72 bp ATCCGAGCTGATGGTGTTGGCTCTGTGACTTGTCGCTaGACACGGACGGCATGGGCACAGTTCTCCTGGCCC +
Preference number: 6 (lower is better)
Translates to: IRADGVGSVTCR*TRTAWAQFSWP
Trigger: GGGCCAGGAGAACTGTGCCCATGCCGTCCGTGTGCAGCGACAAGTCACAGAGCCAACACCATCAGCTCGGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130414.8
CDS TCA 72 bp AGATCCACATTATCCGAGCTGATGGTGTTGGCTCTGTaGCTTGTCGCTGCACACGGACGGCATGGGCACAGT +
Preference number: 6 (lower is better)
Translates to: RSTLSELMVLAL*LVAAHGRHGHS
Trigger: ACTGTGCCCATGCCGTCCGTGTGCAGCGACAAGTCACAGAGCCAACACCATCAGCTCGGATAATGTGGATCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130414.8
CDS CAA 72 bp CCGCAGGCTTTGCTGTTACTCCTCCGCCCATCGTCGTaGTCCAGTGACCTCTGTTTGTATAACTCTGGTTTA +
Preference number: 6 (lower is better)
Translates to: PQALLLLLRPSS*SSDLCLYNSGL
Trigger: TAAACCAGAGTTATACAAACAGAGGTCACTGGACAACGACGATGGGCGGAGGAGTAACAGCAAAGCCTGCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS TCA 72 bp TTAATTCTACCAATCCCAGTCAGCTGCTCCTGCCTCTaGAGCTGCTGGATATTAAAGTCCGGGTTCGACAGG +
Preference number: 6 (lower is better)
Translates to: LILPIPVSCSCL*SCWILKSGFDR
Trigger: CCTGTCGAACCCGGACTTTAATATCCAGCAGCTTCAGAGGCAGGAGCAGCTGACTGGGATTGGTAGAATTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS CAA 90 bp TTGCTGTTACTCCTCCGCCCATCGTCGTTGTCCAGTGACCTCTGTTaGTATAACTCTGGTTTAATTCTACCAATCCCAGTCAGCTGCTCC +
Preference number: 6 (lower is better)
Translates to: LLLLLRPSSLSSDLC*YNSGLILPIPVSCS
Trigger: GGAGCAGCTGACTGGGATTGGTAGAATTAAACCAGAGTTATACAAACAGAGGTCACTGGACAACGACGATGGGCGGAGGAGTAACAGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS CAA 72 bp CTCCTCCGCCCATCGTCGTTGTCCAGTGACCTCTGTTaGTATAACTCTGGTTTAATTCTACCAATCCCAGTC +
Preference number: 6 (lower is better)
Translates to: LLRPSSLSSDLC*YNSGLILPIPV
Trigger: GACTGGGATTGGTAGAATTAAACCAGAGTTATACAAACAGAGGTCACTGGACAACGACGATGGGCGGAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS CAA 90 bp TTCAGTTTCCCGCAGGCTTTGCTGTTACTCCTCCGCCCATCGTCGTaGTCCAGTGACCTCTGTTTGTATAACTCTGGTTTAATTCTACCA +
Preference number: 6 (lower is better)
Translates to: FSFPQALLLLLRPSS*SSDLCLYNSGLILP
Trigger: TGGTAGAATTAAACCAGAGTTATACAAACAGAGGTCACTGGACAACGACGATGGGCGGAGGAGTAACAGCAAAGCCTGCGGGAAACTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS CAA 90 bp AAGTCGCAGTCATATTTTAAAATGAAGTTCAGTTTCCCGCAGGCTTaGCTGTTACTCCTCCGCCCATCGTCGTTGTCCAGTGACCTCTGT +
Preference number: 6 (lower is better)
Translates to: KSQSYFKMKFSFPQA*LLLLRPSSLSSDLC
Trigger: ACAGAGGTCACTGGACAACGACGATGGGCGGAGGAGTAACAGCAAAGCCTGCGGGAAACTGAACTTCATTTTAAAATATGACTGCGACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS TCA 72 bp GGTGTTTTGTTTTCCGGTCAGGAAGCAAGTAGATCTTaGCATAAGGATCTGAAGTCCCAGAGAAGTCCTTGG +
Preference number: 6 (lower is better)
Translates to: GVLFSGQEASRS*HKDLKSQRSPW
Trigger: CCAAGGACTTCTCTGGGACTTCAGATCCTTATGTCAAGATCTACTTGCTTCCTGACCGGAAAACAAAACACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12
CDS CAA 72 bp TCATATTTTAAAATGAAGTTCAGTTTCCCGCAGGCTTaGCTGTTACTCCTCCGCCCATCGTCGTTGTCCAGT +
Preference number: 6 (lower is better)
Translates to: SYFKMKFSFPQA*LLLLRPSSLSS
Trigger: ACTGGACAACGACGATGGGCGGAGGAGTAACAGCAAAGCCTGCGGGAAACTGAACTTCATTTTAAAATATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073459.12