RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SYT6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027849

Ensembl transcript IDs: ENSMUST00000090697.11, ENSMUST00000117221.9, ENSMUST00000118117.8, ENSMUST00000118563.3, ENSMUST00000121834.8, ENSMUST00000132325.10, ENSMUST00000136049.10, ENSMUST00000151985.2, ENSMUST00000183637.8, ENSMUST00000239027.2

Found 523 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTaGCAGCTCGGCCCTGCCATCCTAACTCCAGTGGCTGTGTCTCCG +
Preference number: 1 (lower is better)
Translates to: SEVVSETGMSSHCRS*QLGPAILTPVAVSP
Trigger: CGGAGACACAGCCACTGGAGTTAGGATGGCAGGGCCGAGCTGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000136049.10
3UTR CCA 90 bp AGTGTCTGGGCCTTGCCCTGCACAAGAGCAGTTAAGACCACGGGCTaGCAGGCAGTGGCTGCTGCTGCGGCCATCACTGTGACTGCACGA +
Preference number: 1 (lower is better)
Translates to: SVWALPCTRAVKTTG*QAVAAAAAITVTAR
Trigger: TCGTGCAGTCACAGTGATGGCCGCAGCAGCAGCCACTGCCTGCCAGCCCGTGGTCTTAACTGCTCTTGTGCAGGGCAAGGCCCAGACACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR TCA 90 bp TGGCATCATCCCCATCCACTGACTTCTGCTTGTAAAGCTCAGGCTTaGTACGGCCAATACTGGTGGGCTGCTCGGCGGCAGCCGGCGGCA +
Preference number: 1 (lower is better)
Translates to: WHHPHPLTSACKAQA*YGQYWWAARRQPAA
Trigger: TGCCGCCGGCTGCCGCCGAGCAGCCCACCAGTATTGGCCGTATCAAGCCTGAGCTTTACAAGCAGAAGTCAGTGGATGGGGATGATGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR GCA 90 bp CTGTCGTGGCAGGTGGCGCTTGAAGGATGTGTGCCTGGTGGAGGATaGTGGCTCTGTGGTCTGTCGCTGCAGCTTTGTGTGGCGCATGAT +
Preference number: 1 (lower is better)
Translates to: LSWQVALEGCVPGGG*WLCGLSLQLCVAHD
Trigger: ATCATGCGCCACACAAAGCTGCAGCGACAGACCACAGAGCCAGCATCCTCCACCAGGCACACATCCTTCAAGCGCCACCTGCCACGACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR CCA 90 bp CTGGTGGAGGATGCTGGCTCTGTGGTCTGTCGCTGCAGCTTTGTGTaGCGCATGATGTGCTCTTTGACCGACATCTGCACCTCGGCTGGG +
Preference number: 1 (lower is better)
Translates to: LVEDAGSVVCRCSFV*RMMCSLTDICTSAG
Trigger: CCCAGCCGAGGTGCAGATGTCGGTCAAAGAGCACATCATGCGCCACACAAAGCTGCAGCGACAGACCACAGAGCCAGCATCCTCCACCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR CCA 90 bp CGGCAGCTCATTGCCATAGTCCACGCTGGAGACATGCATCTGTCGTaGCAGGTGGCGCTTGAAGGATGTGTGCCTGGTGGAGGATGCTGG +
Preference number: 1 (lower is better)
Translates to: RQLIAIVHAGDMHLS*QVALEGCVPGGGCW
Trigger: CCAGCATCCTCCACCAGGCACACATCCTTCAAGCGCCACCTGCCACGACAGATGCATGTCTCCAGCGTGGACTATGGCAATGAGCTGCCG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR TCA 90 bp CATAGTCCACGCTGGAGACATGCATCTGTCGTGGCAGGTGGCGCTTaGAGGATGTGTGCCTGGTGGAGGATGCTGGCTCTGTGGTCTGTC +
Preference number: 1 (lower is better)
Translates to: HSPRWRHASVVAGGA*RMCAWWRMLALWSV
Trigger: GACAGACCACAGAGCCAGCATCCTCCACCAGGCACACATCCTTCAAGCGCCACCTGCCACGACAGATGCATGTCTCCAGCGTGGACTATG
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR GCA 90 bp GCTGGCTCTGTGGTCTGTCGCTGCAGCTTTGTGTGGCGCATGATGTaGTCTTTGACCGACATCTGCACCTCGGCTGGGATGTCTGGGGAA +
Preference number: 1 (lower is better)
Translates to: AGSVVCRCSFVWRMM*SLTDICTSAGMSGE
Trigger: TTCCCCAGACATCCCAGCCGAGGTGCAGATGTCGGTCAAAGAGCACATCATGCGCCACACAAAGCTGCAGCGACAGACCACAGAGCCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR GCA 90 bp GCAGCTCGGCCCTGCCATCCTAACTCCAGTGGCTGTGTCTCCGCTTaGAGCATCCACGTGAATGAAATCACAACCGAGGGGTCCCCTCTT +
Preference number: 1 (lower is better)
Translates to: AARPCHPNSSGCVSA*SIHVNEITTEGSPL
Trigger: AAGAGGGGACCCCTCGGTTGTGATTTCATTCACGTGGATGCTGCAAGCGGAGACACAGCCACTGGAGTTAGGATGGCAGGGCCGAGCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136049.10
3UTR CCA 90 bp CCATTCATGCTTCAGAGTGAAGAGGACTGGTCTGGCCACCTTTGGTaGGGACTTGGGGGAGGGAACCCAGGAGCTAGGAGCCTTTCTGGA +
Preference number: 1 (lower is better)
Translates to: PFMLQSEEDWSGHLW*GLGGGNPGARSLSG
Trigger: TCCAGAAAGGCTCCTAGCTCCTGGGTTCCCTCCCCCAAGTCCCCACCAAAGGTGGCCAGACCAGTCCTCTTCACTCTGAAGCATGAATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR TCA 90 bp CCCACAGCTCTTGGCGGCCTCCGACTTGGCATCATCCCCATCCACTaGCTTCTGCTTGTAAAGCTCAGGCTTGATACGGCCAATACTGGT +
Preference number: 1 (lower is better)
Translates to: PTALGGLRLGIIPIH*LLLVKLRLDTANTG
Trigger: ACCAGTATTGGCCGTATCAAGCCTGAGCTTTACAAGCAGAAGTCAGTGGATGGGGATGATGCCAAGTCGGAGGCCGCCAAGAGCTGTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR CCA 90 bp ATACCATTCATGCTTCAGAGTGAAGAGGACTGGTCTGGCCACCTTTaGTGGGGACTTGGGGGAGGGAACCCAGGAGCTAGGAGCCTTTCT +
Preference number: 1 (lower is better)
Translates to: IPFMLQSEEDWSGHL*WGLGGGNPGARSLS
Trigger: AGAAAGGCTCCTAGCTCCTGGGTTCCCTCCCCCAAGTCCCCACCAAAGGTGGCCAGACCAGTCCTCTTCACTCTGAAGCATGAATGGTAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR CCA 90 bp ACTGTATCCAATCAGAGTAGAGACACCTCTGTCCCGTGCTCAGCCTaGAAACCCCTGCTGCTCATTGTGCCCCTTCGCTTGGGCATAAAC +
Preference number: 1 (lower is better)
Translates to: TVSNQSRDTSVPCSA*KPLLLIVPLRLGIN
Trigger: GTTTATGCCCAAGCGAAGGGGCACAATGAGCAGCAGGGGTTTCCAGGCTGAGCACGGGACAGAGGTGTCTCTACTCTGATTGGATACAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
3UTR TCA 90 bp CTTGGAGAGGCTCCTAAGTTGATAGGGTCCGTTCTTGGAGGGCACTaGAAATACAGCCATGGCTCCATCTTTCTGGTGCATCTCCAGGGG +
Preference number: 1 (lower is better)
Translates to: LGEAPKLIGSVLGGH*KYSHGSIFLVHLQG
Trigger: CCCCTGGAGATGCACCAGAAAGATGGAGCCATGGCTGTATTTTCAGTGCCCTCCAAGAACGGACCCTATCAACTTAGGAGCCTCTCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR CCA 90 bp AAGGGTTTCGGGGTGGCAGCTGGGCATGCTTTTGGAGCCCACTTCTaGGAAGATGACATACTCACTAATGTCTGGACTCCTTCTGACCCA +
Preference number: 1 (lower is better)
Translates to: KGFGVAAGHAFGAHF*EDDILTNVWTPSDP
Trigger: TGGGTCAGAAGGAGTCCAGACATTAGTGAGTATGTCATCTTCCCAGAAGTGGGCTCCAAAAGCATGCCCAGCTGCCACCCCGAAACCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR TCA 90 bp GCCATCCTAACTCCAGTGGCTGTGTCTCCGCTTGCAGCATCCACGTaGATGAAATCACAACCGAGGGGTCCCCTCTTTGAAGGATTTCTT +
Preference number: 1 (lower is better)
Translates to: AILTPVAVSPLAAST*MKSQPRGPLFEGFL
Trigger: AAGAAATCCTTCAAAGAGGGGACCCCTCGGTTGTGATTTCATTCACGTGGATGCTGCAAGCGGAGACACAGCCACTGGAGTTAGGATGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136049.10
3UTR CCA 90 bp TGCTGCGGCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTaGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCGC +
Preference number: 1 (lower is better)
Translates to: CCGHHCDCTNTVFRD*NKCGNNIAESHRLR
Trigger: GCGGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGCCGCAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR TCA 90 bp GAACAGGGGTACTCCTTCAGAGTCACAAACATATCAGAGGCCTCATaGTTTCAACACGGGACAAGAAGACCACATCTTGTCTTGTGTCAC +
Preference number: 1 (lower is better)
Translates to: EQGYSFRVTNISEAS*FQHGTRRPHLVLCH
Trigger: GTGACACAAGACAAGATGTGGTCTTCTTGTCCCGTGTTGAAATCATGAGGCCTCTGATATGTTTGTGACTCTGAAGGAGTACCCCTGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR CCA 90 bp CATTTACTAGAAAAGTGGATCGCTTCTCTTGCCACAATATCCTGTTaGCTCATGTCCAATCCAGTCATTCTTCTGACTAGCAGACACTTA +
Preference number: 1 (lower is better)
Translates to: HLLEKWIASLATISC*LMSNPVILLTSRHL
Trigger: TAAGTGTCTGCTAGTCAGAAGAATGACTGGATTGGACATGAGCCAACAGGATATTGTGGCAAGAGAAGCGATCCACTTTTCTAGTAAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR TCA 90 bp ACACGAGGTATGCAGATAGCTTTTGTGTTCTTGACCTTCTGTTGTTaGAAGAAGGAATTTTCCAAGCTGACTTGCTTCATGCAAGTCCTA +
Preference number: 1 (lower is better)
Translates to: TRGMQIAFVFLTFCC*KKEFSKLTCFMQVL
Trigger: TAGGACTTGCATGAAGCAAGTCAGCTTGGAAAATTCCTTCTTTCAACAACAGAAGGTCAAGAACACAAAAGCTATCTGCATACCTCGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR TCA 90 bp AGCAGACACTTATGTAAGTTAGGGCAGCAGAGAAACTTGGTGGCTTaGCTTAAAATGGTGGTGACTTTATTAAGTAGCTACTCCTATAGC +
Preference number: 1 (lower is better)
Translates to: SRHLCKLGQQRNLVA*LKMVVTLLSSYSYS
Trigger: GCTATAGGAGTAGCTACTTAATAAAGTCACCACCATTTTAAGTCAAGCCACCAAGTTTCTCTGCTGCCCTAACTTACATAAGTGTCTGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR CCA 90 bp CCCCAAAGACTGCTATCTTACATTGTATTTCCCAGAACCAGCTTCTaGGCTCTCCATTCTTCATTTTGTATCTCTAATTATTGTGTTTTT +
Preference number: 1 (lower is better)
Translates to: PQRLLSYIVFPRTSF*ALHSSFCISNYCVF
Trigger: AAAAACACAATAATTAGAGATACAAAATGAAGAATGGAGAGCCCAGAAGCTGGTTCTGGGAAATACAATGTAAGATAGCAGTCTTTGGGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR CCA 90 bp TTCTGCATTTATTGTCATTATGTCTCCTCTGTGAGGGAAGAGTCCTaGTTAATAAATGGTGAAGCCTATTTATACCATTCATGCTTCAGA +
Preference number: 1 (lower is better)
Translates to: FCIYCHYVSSVREES*LINGEAYLYHSCFR
Trigger: TCTGAAGCATGAATGGTATAAATAGGCTTCACCATTTATTAACCAGGACTCTTCCCTCACAGAGGAGACATAATGACAATAAATGCAGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR CCA 90 bp TTCTTTGCTCTGTTTAGGCATTTTAAACAGCTGCTTACTACGTCATaGAATTATAAAGCTATGTATAACACAGGAATCCTTCTGGAACAT +
Preference number: 1 (lower is better)
Translates to: FFALFRHFKQLLTTS*NYKAMYNTGILLEH
Trigger: ATGTTCCAGAAGGATTCCTGTGTTATACATAGCTTTATAATTCCATGACGTAGTAAGCAGCTGTTTAAAATGCCTAAACAGAGCAAAGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR CCA 90 bp TCACTTTATTTGATGAATGGAATTCCTTGGCTGTTTATGTTTCCATaGATAACACAGTGGTCATTGAAGATATCAAGAAAATGTGCTGTG +
Preference number: 1 (lower is better)
Translates to: SLYLMNGIPWLFMFP*ITQWSLKISRKCAV
Trigger: CACAGCACATTTTCTTGATATCTTCAATGACCACTGTGTTATCCATGGAAACATAAACAGCCAAGGAATTCCATTCATCAAATAAAGTGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
3UTR-3UTR TCA 90 bp CAGGGTCTTGCGGTGCACCCGGGTCTGCAGCTTGCACTTGCGGTCAGGCAGGAGCTGGGGAAGTGTGGCTaGTCTTCACAGCTGCCTCCA +
Preference number: 2 (lower is better)
Translates to: QGLAVHPGLQLALAVRQELGKCG*SSQLPP
Trigger: TGGAGGCAGCTGTGAAGATCAGCCACACTTCCCCAG...CTCCTGCCTGACCGCAAGTGCAAGCTGCAGACCCGGGTGCACCGCAAGACCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR CCA 90 bp CAGGGTCTTGCGGTGCACCCGGGTCTGCAGCTTGCACTTGCGGTCAGGCAGGAGAGGATGTGTGCCTGGTaGAGGATGCTGGCTCTGTGG +
Preference number: 2 (lower is better)
Translates to: QGLAVHPGLQLALAVRQERMCAW*RMLALW
Trigger: CCACAGAGCCAGCATCCTCCACCAGGCACACATCCT...CTCCTGCCTGACCGCAAGTGCAAGCTGCAGACCCGGGTGCACCGCAAGACCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR GCA 90 bp TCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTGGCAGCTCCTGGCAGGCAGTGGCTaGTGCTGCGGCCATCACTGT +
Preference number: 2 (lower is better)
Translates to: SEVVSETGMSSHCRSWQLLAGSG*CCGHHC
Trigger: ACAGTGATGGCCGCAGCAGCAGCCACTGCCTGCCAG...GAGCTGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR GCA 90 bp TCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTGGCAGCTCGAGGGTGAGCCTGCCTaGTGTGGGCAGGTAGCAGAG +
Preference number: 2 (lower is better)
Translates to: SEVVSETGMSSHCRSWQLEGEPA*CGQVAE
Trigger: CTCTGCTACCTGCCCACAGCAGGCAGGCTCACCCTC...GAGCTGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp GAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTGGCAGCTCGGCGTTAAGACCACGGGCTaGCAGGCAGTGGCTGCTGCT +
Preference number: 2 (lower is better)
Translates to: EVVSETGMSSHCRSWQLGVKTTG*QAVAAA
Trigger: AGCAGCAGCCACTGCCTGCCAGCCCGTGGTCTTAAC...GCCGAGCTGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR GCA 90 bp GAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTGGCAGCTCGGCGCTTATCCGCCATGTTaGCTCTGGAGCTGGGGCTCT +
Preference number: 2 (lower is better)
Translates to: EVVSETGMSSHCRSWQLGAYPPC*LWSWGS
Trigger: AGAGCCCCAGCTCCAGAGGCAACATGGCGGATAAGC...GCCGAGCTGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp GAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTGGCAGCTCGGCGGATGTCCTTCCAGATaGAGGTCTCCCGGGACAGGT +
Preference number: 2 (lower is better)
Translates to: EVVSETGMSSHCRSWQLGGCPSR*RSPGTG
Trigger: ACCTGTCCCGGGAGACCTCCATCTGGAAGGACATCC...GCCGAGCTGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR TCA 90 bp GAAGAGGACTGGTCTGGCCACCTTTGGTGGGGACTTGGGGGAGGGAACCCAGGATTTCGGAGACGGGCATaGGCTCTCACTGTCGAAGCT +
Preference number: 2 (lower is better)
Translates to: EEDWSGHLWWGLGGGNPGFRRRA*ALTVEA
Trigger: AGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAA...TCCTGGGTTCCCTCCCCCAAGTCCCCACCAAAGGTGGCCAGACCAGTCCTCTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR GCA 90 bp TTCCAGATGGAGGTCTCCCGGGACAGGTCAGAGGCCTCAAAGAGATTGTCCAGGGCAGGCAGTGGCTGCTaGTGCGGCCATCACTGTGAC +
Preference number: 2 (lower is better)
Translates to: FQMEVSRDRSEASKRLSRAGSGC*CGHHCD
Trigger: GTCACAGTGATGGCCGCAGCAGCAGCCACTGCCTGC...CCTGGACAATCTCTTTGAGGCCTCTGACCTGTCCCGGGAGACCTCCATCTGGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp GCTGGTGGTGCTAAAGCAGTTGACTTGGGTGGTGAGAGGGGTGTGGCCAGAACCTCTCACTGTCGAAGCTaGCAGCTCGGCCCTGCCATC +
Preference number: 2 (lower is better)
Translates to: AGGAKAVDLGGERGVARTSHCRS*QLGPAI
Trigger: GATGGCAGGGCCGAGCTGCCAGCTTCGACAGTGAGA...GGTTCTGGCCACACCCCTCTCACCACCCAAGTCAACTGCTTTAGCACCACCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
3UTR-3UTR CCA 90 bp ACATGCATCTGTCGTGGCAGGTGGCGCTTGAAGGATGTGTGCCTGGTGGAGGATCCGCCATGTTGCCTCTaGAGCTGGGGCTCTGGAGAG +
Preference number: 2 (lower is better)
Translates to: TCICRGRWRLKDVCLVEDPPCCL*SWGSGE
Trigger: CTCTCCAGAGCCCCAGCTCCAGAGGCAACATGGCGG...ATCCTCCACCAGGCACACATCCTTCAAGCGCCACCTGCCACGACAGATGCATGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR TCA 90 bp ATTGCTGAGTCCCATCGGCTCCGCTGTGCAGCTCATGGCGTCGGAGGTGGTTTCTTTCGGAGACGGGCATaGGCTCTCACTGTCGAAGCT +
Preference number: 2 (lower is better)
Translates to: IAESHRLRCAAHGVGGGFFRRRA*ALTVEA
Trigger: AGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAA...GAAACCACCTCCGACGCCATGAGCTGCACAGCGGAGCCGATGGGACTCAGCAAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR TCA 90 bp GCTGGTGGTGCTAAAGCAGTTGACTTGGGTGGTGAGAGGGGTGTGGCCAGAACCCAGAGTCCGTGGGGCTaGGCTAGTCTCTGGCTAACT +
Preference number: 2 (lower is better)
Translates to: AGGAKAVDLGGERGVARTQSPWG*ASLWLT
Trigger: AGTTAGCCAGAGACTAGCTCAGCCCCACGGACTCTG...GGTTCTGGCCACACCCCTCTCACCACCCAAGTCAACTGCTTTAGCACCACCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR GCA 90 bp GGCGTCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTGGCAGGCTGTGTCTCCGCTTaGAGCATCCACGTGAATGAA +
Preference number: 2 (lower is better)
Translates to: GVGGGFGDGHELSLSKLAGCVSA*SIHVNE
Trigger: TTCATTCACGTGGATGCTGCAAGCGGAGACACAGCC...TGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGACGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000136049.10
3UTR-3UTR GCA 90 bp AATGGAACATCCCACCTGCCTAAGGGTTTCGGGGTGGCAGCTGGGCATGCTTTTGCAGGCAGTGGCTGCTaGTGCGGCCATCACTGTGAC +
Preference number: 2 (lower is better)
Translates to: NGTSHLPKGFGVAAGHAFAGSGC*CGHHCD
Trigger: GTCACAGTGATGGCCGCAGCAGCAGCCACTGCCTGC...AAAAGCATGCCCAGCTGCCACCCCGAAACCCTTAGGCAGGTGGGATGTTCCATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR GCA 90 bp GTGGCTGCTGCTGCGGCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTCTGGCAGGCAGTGGCTaGTGCTGCGGCCATCACTGT +
Preference number: 2 (lower is better)
Translates to: VAAAAAITVTARTLCLETLAGSG*CCGHHC
Trigger: ACAGTGATGGCCGCAGCAGCAGCCACTGCCTGCCAG...AGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGCCGCAGCAGCAGCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR GCA 90 bp GTGGCTGCTGCTGCGGCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTCCCGGGTCTGCAGCTTaGACTTGCGGTCAGGCAGGA +
Preference number: 2 (lower is better)
Translates to: VAAAAAITVTARTLCLETPGSAA*TCGQAG
Trigger: TCCTGCCTGACCGCAAGTGCAAGCTGCAGACCCGGG...AGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGCCGCAGCAGCAGCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR GCA 90 bp TTCCAGATGGAGGTCTCCCGGGACAGGTCAGAGGCCTCAAAGAGATTGTCCAGGTTCAGGGTCTTGCGGTaGACCCGGGTCTGCAGCTTG +
Preference number: 2 (lower is better)
Translates to: FQMEVSRDRSEASKRLSRFRVLR*TRVCSL
Trigger: CAAGCTGCAGACCCGGGTGCACCGCAAGACCCTGAA...CCTGGACAATCTCTTTGAGGCCTCTGACCTGTCCCGGGAGACCTCCATCTGGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR TCA 90 bp TTCCAGATGGAGGTCTCCCGGGACAGGTCAGAGGCCTCAAAGAGATTGTCCAGGCTGGGGAAGTGTGGCTaGTCTTCACAGCTGCCTCCA +
Preference number: 2 (lower is better)
Translates to: FQMEVSRDRSEASKRLSRLGKCG*SSQLPP
Trigger: TGGAGGCAGCTGTGAAGATCAGCCACACTTCCCCAG...CCTGGACAATCTCTTTGAGGCCTCTGACCTGTCCCGGGAGACCTCCATCTGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR TCA 90 bp ACATGCATCTGTCGTGGCAGGTGGCGCTTGAAGGATGTGTGCCTGGTGGAGGATCTGGGGAAGTGTGGCTaGTCTTCACAGCTGCCTCCA +
Preference number: 2 (lower is better)
Translates to: TCICRGRWRLKDVCLVEDLGKCG*SSQLPP
Trigger: TGGAGGCAGCTGTGAAGATCAGCCACACTTCCCCAG...ATCCTCCACCAGGCACACATCCTTCAAGCGCCACCTGCCACGACAGATGCATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR GCA 90 bp TTCCAGATGGAGGTCTCCCGGGACAGGTCAGAGGCCTCAAAGAGATTGTCCAGGGCTTATCCGCCATGTTaGCTCTGGAGCTGGGGCTCT +
Preference number: 2 (lower is better)
Translates to: FQMEVSRDRSEASKRLSRAYPPC*LWSWGS
Trigger: AGAGCCCCAGCTCCAGAGGCAACATGGCGGATAAGC...CCTGGACAATCTCTTTGAGGCCTCTGACCTGTCCCGGGAGACCTCCATCTGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR GCA 90 bp GTGGCTGCTGCTGCGGCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTGTGCCTGGTGGAGGATaGTGGCTCTGTGGTCTGTCG +
Preference number: 2 (lower is better)
Translates to: VAAAAAITVTARTLCLETVPGGG*WLCGLS
Trigger: CGACAGACCACAGAGCCAGCATCCTCCACCAGGCAC...AGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGCCGCAGCAGCAGCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR GCA 90 bp ACACTTTCACTAGTAGCGTACTGGATGTCCTTCCAGATGGAGGTCTCCCGGGACCGGTGCACCCGGGTCTaGAGCTTGCACTTGCGGTCA +
Preference number: 2 (lower is better)
Translates to: TLSLVAYWMSFQMEVSRDRCTRV*SLHLRS
Trigger: TGACCGCAAGTGCAAGCTGCAGACCCGGGTGCACCG...GTCCCGGGAGACCTCCATCTGGAAGGACATCCAGTACGCTACTAGTGAAAGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR GCA 90 bp ACACTTTCACTAGTAGCGTACTGGATGTCCTTCCAGATGGAGGTCTCCCGGGACTGGGGTTCAGGGTCTTaGGGTGCACCCGGGTCTGCA +
Preference number: 2 (lower is better)
Translates to: TLSLVAYWMSFQMEVSRDWGSGS*GAPGSA
Trigger: TGCAGACCCGGGTGCACCGCAAGACCCTGAACCCCA...GTCCCGGGAGACCTCCATCTGGAAGGACATCCAGTACGCTACTAGTGAAAGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR CCA 90 bp AATGGAACATCCCACCTGCCTAAGGGTTTCGGGGTGGCAGCTGGGCATGCTTTTTCTCACTGTCGAAGCTaGCAGCTCGGCCCTGCCATC +
Preference number: 2 (lower is better)
Translates to: NGTSHLPKGFGVAAGHAFSHCRS*QLGPAI
Trigger: GATGGCAGGGCCGAGCTGCCAGCTTCGACAGTGAGA...AAAAGCATGCCCAGCTGCCACCCCGAAACCCTTAGGCAGGTGGGATGTTCCATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
3UTR-3UTR CCA 90 bp ACACTTTCACTAGTAGCGTACTGGATGTCCTTCCAGATGGAGGTCTCCCGGGACCCGCCATGTTGCCTCTaGAGCTGGGGCTCTGGAGAG +
Preference number: 2 (lower is better)
Translates to: TLSLVAYWMSFQMEVSRDPPCCL*SWGSGE
Trigger: CTCTCCAGAGCCCCAGCTCCAGAGGCAACATGGCGG...GTCCCGGGAGACCTCCATCTGGAAGGACATCCAGTACGCTACTAGTGAAAGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR CCA 90 bp GTGGCTGCTGCTGCGGCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTTGGCGGCCTCCGACTTaGCATCATCCCCATCCACTG +
Preference number: 2 (lower is better)
Translates to: VAAAAAITVTARTLCLETWRPPT*HHPHPL
Trigger: CAGTGGATGGGGATGATGCCAAGTCGGAGGCCGCCA...AGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGCCGCAGCAGCAGCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR TCA 90 bp TCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTGGCAGCTCCAAAGTCAAAGACACTaGGATGCAGCTTGCGGTCAG +
Preference number: 2 (lower is better)
Translates to: SEVVSETGMSSHCRSWQLQSQRH*DAACGQ
Trigger: CTGACCGCAAGCTGCATCTCAGTGTCTTTGACTTTG...GAGCTGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR GCA 90 bp TCCTTCCAGATGGAGGTCTCCCGGGACAGGTCAGAGGCCTCAAAGAGATTGTCCGTCTGGGCCTTGCCCTaGACAAGAGCAGTTAAGACC +
Preference number: 2 (lower is better)
Translates to: SFQMEVSRDRSEASKRLSVWALP*TRAVKT
Trigger: GGTCTTAACTGCTCTTGTGCAGGGCAAGGCCCAGAC...GGACAATCTCTTTGAGGCCTCTGACCTGTCCCGGGAGACCTCCATCTGGAAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR GCA 90 bp GCTGGTGGTGCTAAAGCAGTTGACTTGGGTGGTGAGAGGGGTGTGGCCAGAACCGTGTGGCGCATGATGTaGTCTTTGACCGACATCTGC +
Preference number: 2 (lower is better)
Translates to: AGGAKAVDLGGERGVARTVWRMM*SLTDIC
Trigger: GCAGATGTCGGTCAAAGAGCACATCATGCGCCACAC...GGTTCTGGCCACACCCCTCTCACCACCCAAGTCAACTGCTTTAGCACCACCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132325.10
3UTR-3UTR GCA 90 bp GCAGCTCATTGCCATAGTCCACGCTGGAGACATGCATCTGTCGTGGCAGGTGGCGTGTGGCGCATGATGTaGTCTTTGACCGACATCTGC +
Preference number: 2 (lower is better)
Translates to: AAHCHSPRWRHASVVAGGVWRMM*SLTDIC
Trigger: GCAGATGTCGGTCAAAGAGCACATCATGCGCCACAC...GCCACCTGCCACGACAGATGCATGTCTCCAGCGTGGACTATGGCAATGAGCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR GCA 90 bp GCTTTCATAGTCATAGCGGAGGCTGAAGTTGATCTTCCCACAGCTCTTGGCGGCGTGCCTGGTGGAGGATaGTGGCTCTGTGGTCTGTCG +
Preference number: 2 (lower is better)
Translates to: AFIVIAEAEVDLPTALGGVPGGG*WLCGLS
Trigger: CGACAGACCACAGAGCCAGCATCCTCCACCAGGCAC...GCCGCCAAGAGCTGTGGGAAGATCAACTTCAGCCTCCGCTATGACTATGAAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR GCA 90 bp TCCTTCCAGATGGAGGTCTCCCGGGACAGGTCAGAGGCCTCAAAGAGATTGTCCTCTGCAGCTTGCACTTaGGGTCAGGCAGGAGGTAGA +
Preference number: 2 (lower is better)
Translates to: SFQMEVSRDRSEASKRLSSAACT*GQAGGR
Trigger: TCTACCTCCTGCCTGACCGCAAGTGCAAGCTGCAGA...GGACAATCTCTTTGAGGCCTCTGACCTGTCCCGGGAGACCTCCATCTGGAAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR GCA 90 bp CAACCGAGGGGTCCCCTCTTTGAAGGATTTCTTTACCTCCACCAAGGAGTGCCATTCAGGGTCTTGCGGTaGACCCGGGTCTGCAGCTTG +
Preference number: 2 (lower is better)
Translates to: QPRGPLFEGFLYLHQGVPFRVLR*TRVCSL
Trigger: CAAGCTGCAGACCCGGGTGCACCGCAAGACCCTGAA...TGGCACTCCTTGGTGGAGGTAAAGAAATCCTTCAAAGAGGGGACCCCTCGGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR CCA 90 bp CAGGGTCTTGCGGTGCACCCGGGTCTGCAGCTTGCACTTGCGGTCAGGCAGGAGCAAAAAGCGTCACCTTaGGAGACAGAAAAGACTAAG +
Preference number: 2 (lower is better)
Translates to: QGLAVHPGLQLALAVRQEQKASP*ETEKTK
Trigger: CTTAGTCTTTTCTGTCTCCCAAGGTGACGCTTTTTG...CTCCTGCCTGACCGCAAGTGCAAGCTGCAGACCCGGGTGCACCGCAAGACCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp CTCATGGCGTCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCATGGCTCCATCTTTCTaGTGCATCTCCAGGGGTCAA +
Preference number: 2 (lower is better)
Translates to: LMASEVVSETGMSSHCRSMAPSF*CISRGQ
Trigger: TTGACCCCTGGAGATGCACCAGAAAGATGGAGCCAT...GCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGACGCCATGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp GCTTTCATAGTCATAGCGGAGGCTGAAGTTGATCTTCCCACAGCTCTTGGCGGCCCTGGTGGAGGATGCTaGCTCTGTGGTCTGTCGCTG +
Preference number: 2 (lower is better)
Translates to: AFIVIAEAEVDLPTALGGPGGGC*LCGLSL
Trigger: CAGCGACAGACCACAGAGCCAGCATCCTCCACCAGG...GCCGCCAAGAGCTGTGGGAAGATCAACTTCAGCCTCCGCTATGACTATGAAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR GCA 90 bp ACACTTTCACTAGTAGCGTACTGGATGTCCTTCCAGATGGAGGTCTCCCGGGACCGCTTGAAGGATGTGTaGCTGGTGGAGGATGCTGGC +
Preference number: 2 (lower is better)
Translates to: TLSLVAYWMSFQMEVSRDRLKDV*LVEDAG
Trigger: GCCAGCATCCTCCACCAGGCACACATCCTTCAAGCG...GTCCCGGGAGACCTCCATCTGGAAGGACATCCAGTACGCTACTAGTGAAAGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR GCA 90 bp GAAAAGACTAAGACAGATCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGTGGGGTTCAGGGTCTTaGGGTGCACCCGGGTCTGCA +
Preference number: 2 (lower is better)
Translates to: EKTKTDLITQDKCLGLALWGSGS*GAPGSA
Trigger: TGCAGACCCGGGTGCACCGCAAGACCCTGAACCCCA...CAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGATCTGTCTTAGTCTTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp TCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGCACAAGAGCAGTTAAGAGTTAAGACCACGGGCTaGCAGGCAGTGGCTGCTGCT +
Preference number: 2 (lower is better)
Translates to: SDHTGQVSGPCPAQEQLRVKTTG*QAVAAA
Trigger: AGCAGCAGCCACTGCCTGCCAGCCCGTGGTCTTAAC...TCTTAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp TCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGCACAAGAGCAGTTAAGAGGAAGCCCAGGGCACTaGGGTCCTTCAGCTTATCCG +
Preference number: 2 (lower is better)
Translates to: SDHTGQVSGPCPAQEQLRGSPGH*GPSAYP
Trigger: CGGATAAGCTGAAGGACCCCAGTGCCCTGGGCTTCC...TCTTAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp CTTCTGCTTGTAAAGCTCAGGCTTGATACGGCCAATACTGGTGGGCTGCTCGGCATCTGTCGTGGCAGGTaGCGCTTGAAGGATGTGTGC +
Preference number: 2 (lower is better)
Translates to: LLLVKLRLDTANTGGLLGICRGR*RLKDVC
Trigger: GCACACATCCTTCAAGCGCCACCTGCCACGACAGAT...GCCGAGCAGCCCACCAGTATTGGCCGTATCAAGCCTGAGCTTTACAAGCAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR CCA 90 bp GCTGGTGGTGCTAAAGCAGTTGACTTGGGTGGTGAGAGGGGTGTGGCCAGAACCAACATCTCATTCCAGTaGTCCCTGCCAAGGCCTTCA +
Preference number: 2 (lower is better)
Translates to: AGGAKAVDLGGERGVARTNISFQ*SLPRPS
Trigger: TGAAGGCCTTGGCAGGGACCACTGGAATGAGATGTT...GGTTCTGGCCACACCCCTCTCACCACCCAAGTCAACTGCTTTAGCACCACCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132325.10
3UTR CAA 90 bp CATCCCACCTGCCTAAGGGTTTCGGGGTGGCAGCTGGGCATGCTTTaGGAGCCCACTTCTGGGAAGATGACATACTCACTAATGTCTGGA +
Preference number: 2 (lower is better)
Translates to: HPTCLRVSGWQLGML*EPTSGKMTYSLMSG
Trigger: TCCAGACATTAGTGAGTATGTCATCTTCCCAGAAGTGGGCTCCAAAAGCATGCCCAGCTGCCACCCCGAAACCCTTAGGCAGGTGGGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp TTCCAGATGGAGGTCTCCCGGGACAGGTCAGAGGCCTCAAAGAGATTGTCCAGGCAAAGTCAAAGACACTaGGATGCAGCTTGCGGTCAG +
Preference number: 2 (lower is better)
Translates to: FQMEVSRDRSEASKRLSRQSQRH*DAACGQ
Trigger: CTGACCGCAAGCTGCATCTCAGTGTCTTTGACTTTG...CCTGGACAATCTCTTTGAGGCCTCTGACCTGTCCCGGGAGACCTCCATCTGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR TCA 90 bp CAGTGGTCCCTGCCAAGGCCTTCAGCATTGATCCCCACTCTACAGACTCCTATGAGCAGAGGGAGAACATaGTCTCTCCCAAGTCCACAC +
Preference number: 2 (lower is better)
Translates to: QWSLPRPSALIPTLQTPMSRGRT*SLPSPH
Trigger: GTGTGGACTTGGGAGAGATCATGTTCTCCCTCTGCT...CATAGGAGTCTGTAGAGTGGGGATCAATGCTGAAGGCCTTGGCAGGGACCACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR GCA 90 bp GCTGGTGGTGCTAAAGCAGTTGACTTGGGTGGTGAGAGGGGTGTGGCCAGAACCGGCCATCACTGTGACTaGACGAACACTGTGTTTAGA +
Preference number: 2 (lower is better)
Translates to: AGGAKAVDLGGERGVARTGHHCD*TNTVFR
Trigger: TCTAAACACAGTGTTCGTGCAGTCACAGTGATGGCC...GGTTCTGGCCACACCCCTCTCACCACCCAAGTCAACTGCTTTAGCACCACCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR GCA 90 bp GCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTGGAACAAGTGTGGAAGCAGGCAGTGGCTGCTaGTGCGGCCATCACTGTGAC +
Preference number: 2 (lower is better)
Translates to: AITVTARTLCLETGTSVEAGSGC*CGHHCD
Trigger: GTCACAGTGATGGCCGCAGCAGCAGCCACTGCCTGC...TTCCACACTTGTTCCAGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp GCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTGGAACAAGTGTGGAACCGCTGTGCAGCTCATaGCGTCGGAGGTGGTTTCGG +
Preference number: 2 (lower is better)
Translates to: AITVTARTLCLETGTSVEPLCSS*RRRWFR
Trigger: CCGAAACCACCTCCGACGCCATGAGCTGCACAGCGG...TTCCACACTTGTTCCAGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp CTTCTGCTTGTAAAGCTCAGGCTTGATACGGCCAATACTGGTGGGCTGCTCGGCCGCTGCAGCTTTGTGTaGCGCATGATGTGCTCTTTG +
Preference number: 2 (lower is better)
Translates to: LLLVKLRLDTANTGGLLGRCSFV*RMMCSL
Trigger: CAAAGAGCACATCATGCGCCACACAAAGCTGCAGCG...GCCGAGCAGCCCACCAGTATTGGCCGTATCAAGCCTGAGCTTTACAAGCAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR CCA 90 bp GAGACTGGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCGCTGTGAGGATGTGTGCCTGGTaGAGGATGCTGGCTCTGTGG +
Preference number: 2 (lower is better)
Translates to: ETGTSVEITLLSPIGSAVRMCAW*RMLALW
Trigger: CCACAGAGCCAGCATCCTCCACCAGGCACACATCCT...CACAGCGGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp GCTTTCATAGTCATAGCGGAGGCTGAAGTTGATCTTCCCACAGCTCTTGGCGGCGACATGCATCTGTCGTaGCAGGTGGCGCTTGAAGGA +
Preference number: 2 (lower is better)
Translates to: AFIVIAEAEVDLPTALGGDMHLS*QVALEG
Trigger: TCCTTCAAGCGCCACCTGCCACGACAGATGCATGTC...GCCGCCAAGAGCTGTGGGAAGATCAACTTCAGCCTCCGCTATGACTATGAAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR CCA 90 bp GAAAAGACTAAGACAGATCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGTGGCGGCCTCCGACTTaGCATCATCCCCATCCACTG +
Preference number: 2 (lower is better)
Translates to: EKTKTDLITQDKCLGLALWRPPT*HHPHPL
Trigger: CAGTGGATGGGGATGATGCCAAGTCGGAGGCCGCCA...CAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGATCTGTCTTAGTCTTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR GCA 90 bp GCTTTCATAGTCATAGCGGAGGCTGAAGTTGATCTTCCCACAGCTCTTGGCGGCTCTTTGACCGACATCTaGACCTCGGCTGGGATGTCT +
Preference number: 2 (lower is better)
Translates to: AFIVIAEAEVDLPTALGGSLTDI*TSAGMS
Trigger: AGACATCCCAGCCGAGGTGCAGATGTCGGTCAAAGA...GCCGCCAAGAGCTGTGGGAAGATCAACTTCAGCCTCCGCTATGACTATGAAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR GCA 90 bp GTAGCAGAGGGAGAACATGATCTCTCCCAAGTCCACACTTTCACTAGTAGCGTAGTGCCTGGTGGAGGATaGTGGCTCTGTGGTCTGTCG +
Preference number: 2 (lower is better)
Translates to: VAEGEHDLSQVHTFTSSVVPGGG*WLCGLS
Trigger: CGACAGACCACAGAGCCAGCATCCTCCACCAGGCAC...TACGCTACTAGTGAAAGTGTGGACTTGGGAGAGATCATGTTCTCCCTCTGCTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR GCA 90 bp AGATCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGCACAAGAGCAGTTATCTGCAGCTTGCACTTaGGGTCAGGCAGGAGGTAGA +
Preference number: 2 (lower is better)
Translates to: RSDHTGQVSGPCPAQEQLSAACT*GQAGGR
Trigger: TCTACCTCCTGCCTGACCGCAAGTGCAAGCTGCAGA...TAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp GCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTGGAACAAGTGTGGAATCTCACTGTCGAAGCTaGCAGCTCGGCCCTGCCATC +
Preference number: 2 (lower is better)
Translates to: AITVTARTLCLETGTSVESHCRS*QLGPAI
Trigger: GATGGCAGGGCCGAGCTGCCAGCTTCGACAGTGAGA...TTCCACACTTGTTCCAGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp AATCAGCGTCTCGCTTTCATAGTCATAGCGGAGGCTGAAGTTGATCTTCCCACAGTTAAGACCACGGGCTaGCAGGCAGTGGCTGCTGCT +
Preference number: 2 (lower is better)
Translates to: NQRLAFIVIAEAEVDLPTVKTTG*QAVAAA
Trigger: AGCAGCAGCCACTGCCTGCCAGCCCGTGGTCTTAAC...TGTGGGAAGATCAACTTCAGCCTCCGCTATGACTATGAAAGCGAGACGCTGATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp CTCATGGCGTCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCCAAAAAGCGTCACCTTaGGAGACAGAAAAGACTAAG +
Preference number: 2 (lower is better)
Translates to: LMASEVVSETGMSSHCRSQKASP*ETEKTK
Trigger: CTTAGTCTTTTCTGTCTCCCAAGGTGACGCTTTTTG...GCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGACGCCATGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp ATTGCTGAGTCCCATCGGCTCCGCTGTGCAGCTCATGGCGTCGGAGGTGGTTTCCAAAAAGCGTCACCTTaGGAGACAGAAAAGACTAAG +
Preference number: 2 (lower is better)
Translates to: IAESHRLRCAAHGVGGGFQKASP*ETEKTK
Trigger: CTTAGTCTTTTCTGTCTCCCAAGGTGACGCTTTTTG...GAAACCACCTCCGACGCCATGAGCTGCACAGCGGAGCCGATGGGACTCAGCAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp GTGGCTGCTGCTGCGGCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTATGGCTCCATCTTTCTaGTGCATCTCCAGGGGTCAA +
Preference number: 2 (lower is better)
Translates to: VAAAAAITVTARTLCLETMAPSF*CISRGQ
Trigger: TTGACCCCTGGAGATGCACCAGAAAGATGGAGCCAT...AGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGCCGCAGCAGCAGCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp ATTGCTGAGTCCCATCGGCTCCGCTGTGCAGCTCATGGCGTCGGAGGTGGTTTCTTAACTGTGGAGTGTTaGGAAACATATGGCGTGGTT +
Preference number: 2 (lower is better)
Translates to: IAESHRLRCAAHGVGGGFLTVEC*ETYGVV
Trigger: AACCACGCCATATGTTTCCCAACACTCCACAGTTAA...GAAACCACCTCCGACGCCATGAGCTGCACAGCGGAGCCGATGGGACTCAGCAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp AGATCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGCACAAGAGCAGTTAGCTTACAGGGTGTGGTaGAAAGGCCACTCACTGGTC +
Preference number: 2 (lower is better)
Translates to: RSDHTGQVSGPCPAQEQLAYRVW*KGHSLV
Trigger: GACCAGTGAGTGGCCTTTCCACCACACCCTGTAAGC...TAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp CGTCTCGCTTTCATAGTCATAGCGGAGGCTGAAGTTGATCTTCCCACAGCTCTTTGTTGCCTCTGGAGCTaGGGCTCTGGAGAGTCTCTG +
Preference number: 2 (lower is better)
Translates to: RLAFIVIAEAEVDLPTALCCLWS*GSGESL
Trigger: CAGAGACTCTCCAGAGCCCCAGCTCCAGAGGCAACA...AAGAGCTGTGGGAAGATCAACTTCAGCCTCCGCTATGACTATGAAAGCGAGACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR CCA 90 bp GCCAACTCTATCATAGTCCATAACGGAGATGAGCAGGCTCACTTGGTCCATGTTGGAAGCCCAGGGCACTaGGGTCCTTCAGCTTATCCG +
Preference number: 2 (lower is better)
Translates to: ANSIIVHNGDEQAHLVHVGSPGH*GPSAYP
Trigger: CGGATAAGCTGAAGGACCCCAGTGCCCTGGGCTTCC...AACATGGACCAAGTGAGCCTGCTCATCTCCGTTATGGACTATGATAGAGTTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR CCA 90 bp GAGACTGGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCGCTGTGAGGATGCTGGCTCTGTaGTCTGTCGCTGCAGCTTTG +
Preference number: 2 (lower is better)
Translates to: ETGTSVEITLLSPIGSAVRMLAL*SVAAAL
Trigger: CAAAGCTGCAGCGACAGACCACAGAGCCAGCATCCT...CACAGCGGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR TCA 90 bp GAAAAGACTAAGACAGATCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGTTTCGGAGACGGGCATaGGCTCTCACTGTCGAAGCT +
Preference number: 2 (lower is better)
Translates to: EKTKTDLITQDKCLGLALFRRRA*ALTVEA
Trigger: AGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAA...CAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGATCTGTCTTAGTCTTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR TCA 90 bp CAGTGGTCCCTGCCAAGGCCTTCAGCATTGATCCCCACTCTACAGACTCCTATGATCATCCCCATCCACTaGCTTCTGCTTGTAAAGCTC +
Preference number: 2 (lower is better)
Translates to: QWSLPRPSALIPTLQTPMIIPIH*LLLVKL
Trigger: GAGCTTTACAAGCAGAAGTCAGTGGATGGGGATGAT...CATAGGAGTCTGTAGAGTGGGGATCAATGCTGAAGGCCTTGGCAGGGACCACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR GCA 90 bp CACTCTACAGACTCCTATGATCTCGTTGTGGCCAACTCTATCATAGTCCATAACCTGGCAGGCAGTGGCTaGTGCTGCGGCCATCACTGT +
Preference number: 2 (lower is better)
Translates to: HSTDSYDLVVANSIIVHNLAGSG*CCGHHC
Trigger: ACAGTGATGGCCGCAGCAGCAGCCACTGCCTGCCAG...GTTATGGACTATGATAGAGTTGGCCACAACGAGATCATAGGAGTCTGTAGAGTG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR GCA 90 bp GAGACTGGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCGCTGTGCAAGTGTCTGGGCCTTaGCCTGCACAAGAGCAGTTA +
Preference number: 2 (lower is better)
Translates to: ETGTSVEITLLSPIGSAVQVSGP*PAQEQL
Trigger: TAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTG...CACAGCGGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR GCA 90 bp ATAGTGTGTGCTGCCACACCTAACATTAGGCAGTACTGGGGACTGGACTCAGGAACTAGAGGTTCCCCATaGCCCCTTTCCATAAGAGGC +
Preference number: 2 (lower is better)
Translates to: IVCAATPNIRQYWGLDSGTRGSP*PLSIRG
Trigger: GCCTCTTATGGAAAGGGGGCATGGGGAACCTCTAGT...TCCTGAGTCCAGTCCCCAGTACTGCCTAATGTTAGGTGTGGCAGCACACACTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
3UTR-3UTR GCA 90 bp AGATCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGCACAAGAGCAGTTATCTTTGACCGACATCTaGACCTCGGCTGGGATGTCT +
Preference number: 2 (lower is better)
Translates to: RSDHTGQVSGPCPAQEQLSLTDI*TSAGMS
Trigger: AGACATCCCAGCCGAGGTGCAGATGTCGGTCAAAGA...TAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGATCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR GCA 90 bp CACTCTACAGACTCCTATGATCTCGTTGTGGCCAACTCTATCATAGTCCATAACCCCGGGTCTGCAGCTTaGACTTGCGGTCAGGCAGGA +
Preference number: 2 (lower is better)
Translates to: HSTDSYDLVVANSIIVHNPGSAA*TCGQAG
Trigger: TCCTGCCTGACCGCAAGTGCAAGCTGCAGACCCGGG...GTTATGGACTATGATAGAGTTGGCCACAACGAGATCATAGGAGTCTGTAGAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR GCA 90 bp CACTCTACAGACTCCTATGATCTCGTTGTGGCCAACTCTATCATAGTCCATAACTGGGGTTCAGGGTCTTaGGGTGCACCCGGGTCTGCA +
Preference number: 2 (lower is better)
Translates to: HSTDSYDLVVANSIIVHNWGSGS*GAPGSA
Trigger: TGCAGACCCGGGTGCACCGCAAGACCCTGAACCCCA...GTTATGGACTATGATAGAGTTGGCCACAACGAGATCATAGGAGTCTGTAGAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR GCA 90 bp TCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGCACAAGAGCAGTTAAGATCAAAGACACTGAGATaGAGCTTGCGGTCAGCCAGC +
Preference number: 2 (lower is better)
Translates to: SDHTGQVSGPCPAQEQLRSKTLR*SLRSAS
Trigger: GCTGGCTGACCGCAAGCTGCATCTCAGTGTCTTTGA...TCTTAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp TTACTAGAAAAGTGGATCGCTTCTCTTGCCACAATATCCTGTTGGCTCATGTCCCCGCTGTGCAGCTCATaGCGTCGGAGGTGGTTTCGG +
Preference number: 2 (lower is better)
Translates to: LLEKWIASLATISCWLMSPLCSS*RRRWFR
Trigger: CCGAAACCACCTCCGACGCCATGAGCTGCACAGCGG...GGACATGAGCCAACAGGATATTGTGGCAAGAGAAGCGATCCACTTTTCTAGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp AATAAAGGAGAGGAGAACTTGGTGGCTTTAGCAAACCTCTGTGTGCAAATGGCCGTTAAGACCACGGGCTaGCAGGCAGTGGCTGCTGCT +
Preference number: 2 (lower is better)
Translates to: NKGEENLVALANLCVQMAVKTTG*QAVAAA
Trigger: AGCAGCAGCCACTGCCTGCCAGCCCGTGGTCTTAAC...GGCCATTTGCACACAGAGGTTTGCTAAAGCCACCAAGTTCTCCTCTCCTTTATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp GCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTGGAACAAGTGTGGAATGTTGCCTCTGGAGCTaGGGCTCTGGAGAGTCTCTG +
Preference number: 2 (lower is better)
Translates to: AITVTARTLCLETGTSVECCLWS*GSGESL
Trigger: CAGAGACTCTCCAGAGCCCCAGCTCCAGAGGCAACA...TTCCACACTTGTTCCAGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp GTAGCAGAGGGAGAACATGATCTCTCCCAAGTCCACACTTTCACTAGTAGCGTATGTTGCCTCTGGAGCTaGGGCTCTGGAGAGTCTCTG +
Preference number: 2 (lower is better)
Translates to: VAEGEHDLSQVHTFTSSVCCLWS*GSGESL
Trigger: CAGAGACTCTCCAGAGCCCCAGCTCCAGAGGCAACA...TACGCTACTAGTGAAAGTGTGGACTTGGGAGAGATCATGTTCTCCCTCTGCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR CCA 90 bp CACTCTACAGACTCCTATGATCTCGTTGTGGCCAACTCTATCATAGTCCATAACCCGCCATGTTGCCTCTaGAGCTGGGGCTCTGGAGAG +
Preference number: 2 (lower is better)
Translates to: HSTDSYDLVVANSIIVHNPPCCL*SWGSGE
Trigger: CTCTCCAGAGCCCCAGCTCCAGAGGCAACATGGCGG...GTTATGGACTATGATAGAGTTGGCCACAACGAGATCATAGGAGTCTGTAGAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR CCA 90 bp TCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGCACAAGAGCAGTTAAGATTCCGCAAAAGTCCTTaGCAGGGAGGTCAAAGGCCT +
Preference number: 2 (lower is better)
Translates to: SDHTGQVSGPCPAQEQLRFRKSP*QGGQRP
Trigger: AGGCCTTTGACCTCCCTGCCAAGGACTTTTGCGGAA...TCTTAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR TCA 90 bp CCCAAAGACTGCTATCTTACATTGTATTTCCCAGAACCAGCTTCTGGGCTCTCCTTTCGGAGACGGGCATaGGCTCTCACTGTCGAAGCT +
Preference number: 2 (lower is better)
Translates to: PKDCYLTLYFPEPASGLSFRRRA*ALTVEA
Trigger: AGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAA...GGAGAGCCCAGAAGCTGGTTCTGGGAAATACAATGTAAGATAGCAGTCTTTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp AGATCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGCACAAGAGCAGTTAGAGGGGTCCCCTCTTTaGAGGATTTCTTTACCTCCA +
Preference number: 2 (lower is better)
Translates to: RSDHTGQVSGPCPAQEQLEGSPL*RISLPP
Trigger: TGGAGGTAAAGAAATCCTTCAAAGAGGGGACCCCTC...TAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136049.10
3UTR-3UTR GCA 90 bp GGGAAACATATGGCGTGGTTACTTTCAGCAGGATCATTCCTAAGGAAAGCGACTGCTTATCCGCCATGTTaGCTCTGGAGCTGGGGCTCT +
Preference number: 2 (lower is better)
Translates to: GKHMAWLLSAGSFLRKATAYPPC*LWSWGS
Trigger: AGAGCCCCAGCTCCAGAGGCAACATGGCGGATAAGC...AGTCGCTTTCCTTAGGAATGATCCTGCTGAAAGTAACCACGCCATATGTTTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp ATGATCTCTCCCAAGTCCACACTTTCACTAGTAGCGTACTGGATGTCCTTCCAGCACAGGACAAGTGTCTaGGCCTTGCCCTGCACAAGA +
Preference number: 2 (lower is better)
Translates to: MISPKSTLSLVAYWMSFQHRTSV*ALPCTR
Trigger: TCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTG...CTGGAAGGACATCCAGTACGCTACTAGTGAAAGTGTGGACTTGGGAGAGATCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp CTCATGGCGTCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCGCAGACTCAAAAATGTaGTTCGGATTTCAAAATGAC +
Preference number: 2 (lower is better)
Translates to: LMASEVVSETGMSSHCRSADSKM*FGFQND
Trigger: GTCATTTTGAAATCCGAACCACATTTTTGAGTCTGC...GCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGACGCCATGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp CACTCTACAGACTCCTATGATCTCGTTGTGGCCAACTCTATCATAGTCCATAACGGAAGCCCAGGGCACTaGGGTCCTTCAGCTTATCCG +
Preference number: 2 (lower is better)
Translates to: HSTDSYDLVVANSIIVHNGSPGH*GPSAYP
Trigger: CGGATAAGCTGAAGGACCCCAGTGCCCTGGGCTTCC...GTTATGGACTATGATAGAGTTGGCCACAACGAGATCATAGGAGTCTGTAGAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR CCA 90 bp AATCAGCGTCTCGCTTTCATAGTCATAGCGGAGGCTGAAGTTGATCTTCCCACAAGGATGCTGGCTCTGTaGTCTGTCGCTGCAGCTTTG +
Preference number: 2 (lower is better)
Translates to: NQRLAFIVIAEAEVDLPTRMLAL*SVAAAL
Trigger: CAAAGCTGCAGCGACAGACCACAGAGCCAGCATCCT...TGTGGGAAGATCAACTTCAGCCTCCGCTATGACTATGAAAGCGAGACGCTGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR CAA 90 bp CCGTGCTCAGCCTGGAAACCCCTGCTGCTCATTGTGCCCCTTCGCTaGGGCATAAACCAAATCAATCCTGTGTATGTTGAAGCATTCAAA +
Preference number: 2 (lower is better)
Translates to: PCSAWKPLLLIVPLR*GINQINPVYVEAFK
Trigger: TTTGAATGCTTCAACATACACAGGATTGATTTGGTTTATGCCCAAGCGAAGGGGCACAATGAGCAGCAGGGGTTTCCAGGCTGAGCACGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
3UTR-3UTR TCA 90 bp GCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTGGAACAAGTGTGGAAGTTCTTGGAGGGCACTaGAAATACAGCCATGGCTCC +
Preference number: 2 (lower is better)
Translates to: AITVTARTLCLETGTSVEVLGGH*KYSHGS
Trigger: GGAGCCATGGCTGTATTTTCAGTGCCCTCCAAGAAC...TTCCACACTTGTTCCAGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp CGTCTCGCTTTCATAGTCATAGCGGAGGCTGAAGTTGATCTTCCCACAGCTCTTTGTAAAGCTCAGGCTTaGTACGGCCAATACTGGTGG +
Preference number: 2 (lower is better)
Translates to: RLAFIVIAEAEVDLPTALCKAQA*YGQYWW
Trigger: CCACCAGTATTGGCCGTATCAAGCCTGAGCTTTACA...AAGAGCTGTGGGAAGATCAACTTCAGCCTCCGCTATGACTATGAAAGCGAGACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR TCA 90 bp CCCAAAGACTGCTATCTTACATTGTATTTCCCAGAACCAGCTTCTGGGCTCTCCCAAGGCCTTCAGCATTaGTCCCCACTCTACAGACTC +
Preference number: 2 (lower is better)
Translates to: PKDCYLTLYFPEPASGLSQGLQH*SPLYRL
Trigger: GAGTCTGTAGAGTGGGGATCAATGCTGAAGGCCTTG...GGAGAGCCCAGAAGCTGGTTCTGGGAAATACAATGTAAGATAGCAGTCTTTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132325.10
3UTR-3UTR GCA 90 bp CCCAAAGACTGCTATCTTACATTGTATTTCCCAGAACCAGCTTCTGGGCTCTCCGGCTGTGTCTCCGCTTaGAGCATCCACGTGAATGAA +
Preference number: 2 (lower is better)
Translates to: PKDCYLTLYFPEPASGLSGCVSA*SIHVNE
Trigger: TTCATTCACGTGGATGCTGCAAGCGGAGACACAGCC...GGAGAGCCCAGAAGCTGGTTCTGGGAAATACAATGTAAGATAGCAGTCTTTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
3UTR-3UTR GCA 90 bp AATCAGCGTCTCGCTTTCATAGTCATAGCGGAGGCTGAAGTTGATCTTCCCACAGGCTGTGTCTCCGCTTaGAGCATCCACGTGAATGAA +
Preference number: 2 (lower is better)
Translates to: NQRLAFIVIAEAEVDLPTGCVSA*SIHVNE
Trigger: TTCATTCACGTGGATGCTGCAAGCGGAGACACAGCC...TGTGGGAAGATCAACTTCAGCCTCCGCTATGACTATGAAAGCGAGACGCTGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136049.10
3UTR-3UTR GCA 90 bp CACAATGAAGTTACTTGCTTGCTGAGACTCTTGTCACGACCTTGTGATTTTTCTCTGGCAGGCAGTGGCTaGTGCTGCGGCCATCACTGT +
Preference number: 2 (lower is better)
Translates to: HNEVTCLLRLLSRPCDFSLAGSG*CCGHHC
Trigger: ACAGTGATGGCCGCAGCAGCAGCCACTGCCTGCCAG...AGAAAAATCACAAGGTCGTGACAAGAGTCTCAGCAAGCAAGTAACTTCATTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR GCA 90 bp ATGATCTCTCCCAAGTCCACACTTTCACTAGTAGCGTACTGGATGTCCTTCCAGCAAGTGTCTGGGCCTTaGCCTGCACAAGAGCAGTTA +
Preference number: 2 (lower is better)
Translates to: MISPKSTLSLVAYWMSFQQVSGP*PAQEQL
Trigger: TAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTG...CTGGAAGGACATCCAGTACGCTACTAGTGAAAGTGTGGACTTGGGAGAGATCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR GCA 90 bp ATGATCTCTCCCAAGTCCACACTTTCACTAGTAGCGTACTGGATGTCCTTCCAGGTGTGGCGCATGATGTaGTCTTTGACCGACATCTGC +
Preference number: 2 (lower is better)
Translates to: MISPKSTLSLVAYWMSFQVWRMM*SLTDIC
Trigger: GCAGATGTCGGTCAAAGAGCACATCATGCGCCACAC...CTGGAAGGACATCCAGTACGCTACTAGTGAAAGTGTGGACTTGGGAGAGATCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR GCA 90 bp GCCAACTCTATCATAGTCCATAACGGAGATGAGCAGGCTCACTTGGTCCATGTTTCAAAGACACTGAGATaGAGCTTGCGGTCAGCCAGC +
Preference number: 2 (lower is better)
Translates to: ANSIIVHNGDEQAHLVHVSKTLR*SLRSAS
Trigger: GCTGGCTGACCGCAAGCTGCATCTCAGTGTCTTTGA...AACATGGACCAAGTGAGCCTGCTCATCTCCGTTATGGACTATGATAGAGTTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR GCA 90 bp GTGGCTGCTGCTGCGGCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTGCCTGTGATGTCCATTaGTTTGAGATTTCGACACTT +
Preference number: 2 (lower is better)
Translates to: VAAAAAITVTARTLCLETACDVH*FEISTL
Trigger: AAGTGTCGAAATCTCAAAGCAATGGACATCACAGGC...AGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGCCGCAGCAGCAGCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp CTAAGGAAAGCGACTAAGTTCCCACGTGGAGTCAAAATGTTTCCAGTTGGGGAACACAGGACAAGTGTCTaGGCCTTGCCCTGCACAAGA +
Preference number: 2 (lower is better)
Translates to: LRKATKFPRGVKMFPVGEHRTSV*ALPCTR
Trigger: TCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTG...TTCCCCAACTGGAAACATTTTGACTCCACGTGGGAACTTAGTCGCTTTCCTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp GTGGCTGCTGCTGCGGCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTCAAAAAGCGTCACCTTaGGAGACAGAAAAGACTAAG +
Preference number: 2 (lower is better)
Translates to: VAAAAAITVTARTLCLETQKASP*ETEKTK
Trigger: CTTAGTCTTTTCTGTCTCCCAAGGTGACGCTTTTTG...AGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGCCGCAGCAGCAGCCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp AATGGAACATCCCACCTGCCTAAGGGTTTCGGGGTGGCAGCTGGGCATGCTTTTCAAAATGTTTCCAGTTaGGGAAAGCCAACAAAGAGG +
Preference number: 2 (lower is better)
Translates to: NGTSHLPKGFGVAAGHAFQNVSS*GKPTKR
Trigger: CCTCTTTGTTGGCTTTCCCCAACTGGAAACATTTTG...AAAAGCATGCCCAGCTGCCACCCCGAAACCCTTAGGCAGGTGGGATGTTCCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp GTGGCTGCTGCTGCGGCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTCAAAATGTTTCCAGTTaGGGAAAGCCAACAAAGAGG +
Preference number: 2 (lower is better)
Translates to: VAAAAAITVTARTLCLETQNVSS*GKPTKR
Trigger: CCTCTTTGTTGGCTTTCCCCAACTGGAAACATTTTG...AGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGCCGCAGCAGCAGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp AATCAGCGTCTCGCTTTCATAGTCATAGCGGAGGCTGAAGTTGATCTTCCCACACGCTGCAGCTTTGTGTaGCGCATGATGTGCTCTTTG +
Preference number: 2 (lower is better)
Translates to: NQRLAFIVIAEAEVDLPTRCSFV*RMMCSL
Trigger: CAAAGAGCACATCATGCGCCACACAAAGCTGCAGCG...TGTGGGAAGATCAACTTCAGCCTCCGCTATGACTATGAAAGCGAGACGCTGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR CCA 90 bp TATTTATACCATTCATGCTTCAGAGTGAAGAGGACTGGTCTGGCCACCTTTGGTGGATGTCCTTCCAGATaGAGGTCTCCCGGGACAGGT +
Preference number: 2 (lower is better)
Translates to: YLYHSCFRVKRTGLATFGGCPSR*RSPGTG
Trigger: ACCTGTCCCGGGAGACCTCCATCTGGAAGGACATCC...ACCAAAGGTGGCCAGACCAGTCCTCTTCACTCTGAAGCATGAATGGTATAAATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp ATAGTGTGTGCTGCCACACCTAACATTAGGCAGTACTGGGGACTGGACTCAGGACTAGCCCCATCACCATaGCTTATAAAATGCTCACAG +
Preference number: 2 (lower is better)
Translates to: IVCAATPNIRQYWGLDSGLAPSP*LIKCSQ
Trigger: CTGTGAGCATTTTATAAGTCATGGTGATGGGGCTAG...TCCTGAGTCCAGTCCCCAGTACTGCCTAATGTTAGGTGTGGCAGCACACACTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
3UTR-3UTR TCA 90 bp GTAGCAGAGGGAGAACATGATCTCTCCCAAGTCCACACTTTCACTAGTAGCGTATGTAAAGCTCAGGCTTaGTACGGCCAATACTGGTGG +
Preference number: 2 (lower is better)
Translates to: VAEGEHDLSQVHTFTSSVCKAQA*YGQYWW
Trigger: CCACCAGTATTGGCCGTATCAAGCCTGAGCTTTACA...TACGCTACTAGTGAAAGTGTGGACTTGGGAGAGATCATGTTCTCCCTCTGCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR GCA 90 bp TTACTAGAAAAGTGGATCGCTTCTCTTGCCACAATATCCTGTTGGCTCATGTCCGTCTGGGCCTTGCCCTaGACAAGAGCAGTTAAGACC +
Preference number: 2 (lower is better)
Translates to: LLEKWIASLATISCWLMSVWALP*TRAVKT
Trigger: GGTCTTAACTGCTCTTGTGCAGGGCAAGGCCCAGAC...GGACATGAGCCAACAGGATATTGTGGCAAGAGAAGCGATCCACTTTTCTAGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR GCA 90 bp ACACAGTGGTCATTGAAGATATCAAGAAAATGTGCTGTGTTCTTCCTGTGGGTGCCTGGAAACCCCTGCTaGTCATTGTGCCCCTTCGCT +
Preference number: 2 (lower is better)
Translates to: TQWSLKISRKCAVFFLWVPGNPC*SLCPFA
Trigger: AGCGAAGGGGCACAATGAGCAGCAGGGGTTTCCAGG...CACCCACAGGAAGAACACAGCACATTTTCTTGATATCTTCAATGACCACTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
3UTR-3UTR GCA 90 bp ACACAGTGGTCATTGAAGATATCAAGAAAATGTGCTGTGTTCTTCCTGTGGGTGCAGCCTGGAAACCCCTaGTGCTCATTGTGCCCCTTC +
Preference number: 2 (lower is better)
Translates to: TQWSLKISRKCAVFFLWVQPGNP*CSLCPF
Trigger: GAAGGGGCACAATGAGCAGCAGGGGTTTCCAGGCTG...CACCCACAGGAAGAACACAGCACATTTTCTTGATATCTTCAATGACCACTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
3UTR-3UTR CCA 90 bp ACACAGTGGTCATTGAAGATATCAAGAAAATGTGCTGTGTTCTTCCTGTGGGTGGTCCCGTGCTCAGCCTaGAAACCCCTGCTGCTCATT +
Preference number: 2 (lower is better)
Translates to: TQWSLKISRKCAVFFLWVVPCSA*KPLLLI
Trigger: AATGAGCAGCAGGGGTTTCCAGGCTGAGCACGGGAC...CACCCACAGGAAGAACACAGCACATTTTCTTGATATCTTCAATGACCACTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
3UTR-3UTR CCA 90 bp CACTCTACAGACTCCTATGATCTCGTTGTGGCCAACTCTATCATAGTCCATAACAGGATGCTGGCTCTGTaGTCTGTCGCTGCAGCTTTG +
Preference number: 2 (lower is better)
Translates to: HSTDSYDLVVANSIIVHNRMLAL*SVAAAL
Trigger: CAAAGCTGCAGCGACAGACCACAGAGCCAGCATCCT...GTTATGGACTATGATAGAGTTGGCCACAACGAGATCATAGGAGTCTGTAGAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR CCA 90 bp CACTCTACAGACTCCTATGATCTCGTTGTGGCCAACTCTATCATAGTCCATAACATCTGTCGTGGCAGGTaGCGCTTGAAGGATGTGTGC +
Preference number: 2 (lower is better)
Translates to: HSTDSYDLVVANSIIVHNICRGR*RLKDVC
Trigger: GCACACATCCTTCAAGCGCCACCTGCCACGACAGAT...GTTATGGACTATGATAGAGTTGGCCACAACGAGATCATAGGAGTCTGTAGAGTG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR CCA 90 bp GTGATGTCCATTGCTTTGAGATTTCGACACTTGATCACTGTGAGGGTGAGCCTGAGTTCTCATCAAAGGTaGGGTTCAGGGTCTTGCGGT +
Preference number: 2 (lower is better)
Translates to: VMSIALRFRHLITVRVSLSSHQR*GSGSCG
Trigger: ACCGCAAGACCCTGAACCCCACCTTTGATGAGAACT...CAGGCTCACCCTCACAGTGATCAAGTGTCGAAATCTCAAAGCAATGGACATCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR TCA 90 bp CACAATGAAGTTACTTGCTTGCTGAGACTCTTGTCACGACCTTGTGATTTTTCTCAGAGTCCGTGGGGCTaGGCTAGTCTCTGGCTAACT +
Preference number: 2 (lower is better)
Translates to: HNEVTCLLRLLSRPCDFSQSPWG*ASLWLT
Trigger: AGTTAGCCAGAGACTAGCTCAGCCCCACGGACTCTG...AGAAAAATCACAAGGTCGTGACAAGAGTCTCAGCAAGCAAGTAACTTCATTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp GCCAACTCTATCATAGTCCATAACGGAGATGAGCAGGCTCACTTGGTCCATGTTATCATCCCCATCCACTaGCTTCTGCTTGTAAAGCTC +
Preference number: 2 (lower is better)
Translates to: ANSIIVHNGDEQAHLVHVIIPIH*LLLVKL
Trigger: GAGCTTTACAAGCAGAAGTCAGTGGATGGGGATGAT...AACATGGACCAAGTGAGCCTGCTCATCTCCGTTATGGACTATGATAGAGTTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR GCA 90 bp TTACTAGAAAAGTGGATCGCTTCTCTTGCCACAATATCCTGTTGGCTCATGTCCCAAGTGTCTGGGCCTTaGCCTGCACAAGAGCAGTTA +
Preference number: 2 (lower is better)
Translates to: LLEKWIASLATISCWLMSQVSGP*PAQEQL
Trigger: TAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTG...GGACATGAGCCAACAGGATATTGTGGCAAGAGAAGCGATCCACTTTTCTAGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR GCA 90 bp AATGGAACATCCCACCTGCCTAAGGGTTTCGGGGTGGCAGCTGGGCATGCTTTTGGCATTTTAAACAGCTaGTTACTACGTCATGGAATT +
Preference number: 2 (lower is better)
Translates to: NGTSHLPKGFGVAAGHAFGILNS*LLRHGI
Trigger: AATTCCATGACGTAGTAAGCAGCTGTTTAAAATGCC...AAAAGCATGCCCAGCTGCCACCCCGAAACCCTTAGGCAGGTGGGATGTTCCATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR GCA 90 bp TCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGCACAAGAGCAGTTAAGAAAACTCACTTTCATGTaGTTACAGGGTGTGGTGGAA +
Preference number: 2 (lower is better)
Translates to: SDHTGQVSGPCPAQEQLRKLTFM*LQGVVE
Trigger: TTCCACCACACCCTGTAAGCACATGAAAGTGAGTTT...TCTTAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp AATGGAACATCCCACCTGCCTAAGGGTTTCGGGGTGGCAGCTGGGCATGCTTTTGCAGACTCAAAAATGTaGTTCGGATTTCAAAATGAC +
Preference number: 2 (lower is better)
Translates to: NGTSHLPKGFGVAAGHAFADSKM*FGFQND
Trigger: GTCATTTTGAAATCCGAACCACATTTTTGAGTCTGC...AAAAGCATGCCCAGCTGCCACCCCGAAACCCTTAGGCAGGTGGGATGTTCCATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp ACTGTGACTGCACGAACACTGTGTTTAGAGACTGGAACAAGTGTGGAAATAACAGCTTACAGGGTGTGGTaGAAAGGCCACTCACTGGTC +
Preference number: 2 (lower is better)
Translates to: TVTARTLCLETGTSVEITAYRVW*KGHSLV
Trigger: GACCAGTGAGTGGCCTTTCCACCACACCCTGTAAGC...TGTTATTTCCACACTTGTTCCAGTCTCTAAACACAGTGTTCGTGCAGTCACAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp AATAAAGGAGAGGAGAACTTGGTGGCTTTAGCAAACCTCTGTGTGCAAATGGCCGGAGCCTTTCTGGAGTaGGTTTCCATGCCTAATGTC +
Preference number: 2 (lower is better)
Translates to: NKGEENLVALANLCVQMAGAFLE*VSMPNV
Trigger: GACATTAGGCATGGAAACCCACTCCAGAAAGGCTCC...GGCCATTTGCACACAGAGGTTTGCTAAAGCCACCAAGTTCTCCTCTCCTTTATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp GCTCTTCATAGACAGGCAGACTCAAAAATGTGGTTCGGATTTCAAAATGACCCAGTTCTTGGAGGGCACTaGAAATACAGCCATGGCTCC +
Preference number: 2 (lower is better)
Translates to: ALHRQADSKMWFGFQNDPVLGGH*KYSHGS
Trigger: GGAGCCATGGCTGTATTTTCAGTGCCCTCCAAGAAC...TGGGTCATTTTGAAATCCGAACCACATTTTTGAGTCTGCCTGTCTATGAAGAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR GCA 90 bp TGTTTAGAGACTGGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCGGCCATCACTGTGACTaGACGAACACTGTGTTTAGA +
Preference number: 2 (lower is better)
Translates to: CLETGTSVEITLLSPIGSGHHCD*TNTVFR
Trigger: TCTAAACACAGTGTTCGTGCAGTCACAGTGATGGCC...GGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTCTAAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR GCA 90 bp TGCCATCCTAACTCCAGTGGCTGTGTCTCCGCTTGCAGCATCCACGTGAATGAAGGCATTTTAAACAGCTaGTTACTACGTCATGGAATT +
Preference number: 2 (lower is better)
Translates to: CHPNSSGCVSACSIHVNEGILNS*LLRHGI
Trigger: AATTCCATGACGTAGTAAGCAGCTGTTTAAAATGCC...TTCATTCACGTGGATGCTGCAAGCGGAGACACAGCCACTGGAGTTAGGATGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
3UTR-3UTR CCA 90 bp GCTTTCATAGTCATAGCGGAGGCTGAAGTTGATCTTCCCACAGCTCTTGGCGGCACTGTGTTTAGAGACTaGAACAAGTGTGGAAATAAC +
Preference number: 2 (lower is better)
Translates to: AFIVIAEAEVDLPTALGGTVFRD*NKCGNN
Trigger: GTTATTTCCACACTTGTTCCAGTCTCTAAACACAGT...GCCGCCAAGAGCTGTGGGAAGATCAACTTCAGCCTCCGCTATGACTATGAAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp GAAAAGACTAAGACAGATCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGTTAACTGTGGAGTGTTaGGAAACATATGGCGTGGTT +
Preference number: 2 (lower is better)
Translates to: EKTKTDLITQDKCLGLALLTVEC*ETYGVV
Trigger: AACCACGCCATATGTTTCCCAACACTCCACAGTTAA...CAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGATCTGTCTTAGTCTTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp AGATCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGCACAAGAGCAGTTAACACAGGAATCCTTCTaGAACATATGTACCTCCTTT +
Preference number: 2 (lower is better)
Translates to: RSDHTGQVSGPCPAQEQLTQESF*NICTSF
Trigger: AAAGGAGGTACATATGTTCCAGAAGGATTCCTGTGT...TAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGATCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp ACTGTGACTGCACGAACACTGTGTTTAGAGACTGGAACAAGTGTGGAAATAACATGTGCTTACAGGGTGTaGTGGAAAGGCCACTCACTG +
Preference number: 2 (lower is better)
Translates to: TVTARTLCLETGTSVEITCAYRV*WKGHSL
Trigger: CAGTGAGTGGCCTTTCCACCACACCCTGTAAGCACA...TGTTATTTCCACACTTGTTCCAGTCTCTAAACACAGTGTTCGTGCAGTCACAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp CACAATGAAGTTACTTGCTTGCTGAGACTCTTGTCACGACCTTGTGATTTTTCTGTTCTTGGAGGGCACTaGAAATACAGCCATGGCTCC +
Preference number: 2 (lower is better)
Translates to: HNEVTCLLRLLSRPCDFSVLGGH*KYSHGS
Trigger: GGAGCCATGGCTGTATTTTCAGTGCCCTCCAAGAAC...AGAAAAATCACAAGGTCGTGACAAGAGTCTCAGCAAGCAAGTAACTTCATTGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp AATAAAGGAGAGGAGAACTTGGTGGCTTTAGCAAACCTCTGTGTGCAAATGGCCATATCAGAGGCCTCATaGTTTCAACACGGGACAAGA +
Preference number: 2 (lower is better)
Translates to: NKGEENLVALANLCVQMAISEAS*FQHGTR
Trigger: TCTTGTCCCGTGTTGAAATCATGAGGCCTCTGATAT...GGCCATTTGCACACAGAGGTTTGCTAAAGCCACCAAGTTCTCCTCTCCTTTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp AGATCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGCACAAGAGCAGTTAGTTGTCAAACAAATGTaGTCATTAACTGTGGAGTGT +
Preference number: 2 (lower is better)
Translates to: RSDHTGQVSGPCPAQEQLVVKQM*SLTVEC
Trigger: ACACTCCACAGTTAATGATCACATTTGTTTGACAAC...TAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGATCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp AATAAAGGAGAGGAGAACTTGGTGGCTTTAGCAAACCTCTGTGTGCAAATGGCCAAGTTACTTGCTTGCTaGGACTCTTGTCACGACCTT +
Preference number: 2 (lower is better)
Translates to: NKGEENLVALANLCVQMAKLLAC*DSCHDL
Trigger: AAGGTCGTGACAAGAGTCTCAGCAAGCAAGTAACTT...GGCCATTTGCACACAGAGGTTTGCTAAAGCCACCAAGTTCTCCTCTCCTTTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR GCA 90 bp CACAATGAAGTTACTTGCTTGCTGAGACTCTTGTCACGACCTTGTGATTTTTCTCAAGTGTCTGGGCCTTaGCCTGCACAAGAGCAGTTA +
Preference number: 2 (lower is better)
Translates to: HNEVTCLLRLLSRPCDFSQVSGP*PAQEQL
Trigger: TAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTG...AGAAAAATCACAAGGTCGTGACAAGAGTCTCAGCAAGCAAGTAACTTCATTGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR GCA 90 bp GCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTGGAACAAGTGTGGAAAAACTCACTTTCATGTaGTTACAGGGTGTGGTGGAA +
Preference number: 2 (lower is better)
Translates to: AITVTARTLCLETGTSVEKLTFM*LQGVVE
Trigger: TTCCACCACACCCTGTAAGCACATGAAAGTGAGTTT...TTCCACACTTGTTCCAGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp TCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGCACAAGAGCAGTTAAGAACTGTGTTTAGAGACTaGAACAAGTGTGGAAATAAC +
Preference number: 2 (lower is better)
Translates to: SDHTGQVSGPCPAQEQLRTVFRD*NKCGNN
Trigger: GTTATTTCCACACTTGTTCCAGTCTCTAAACACAGT...TCTTAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CCA 90 bp ATATTTGAAGAGAAAAATCATCTTTACCCACCAGTCGCTAGCACAAGGCTCATACACAGGACAAGTGTCTaGGCCTTGCCCTGCACAAGA +
Preference number: 2 (lower is better)
Translates to: IFEEKNHLYPPVASTRLIHRTSV*ALPCTR
Trigger: TCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTG...TATGAGCCTTGTGCTAGCGACTGGTGGGTAAAGATGATTTTTCTCTTCAAATAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp TTACTAGAAAAGTGGATCGCTTCTCTTGCCACAATATCCTGTTGGCTCATGTCCCCCAGAACCAGCTTCTaGGCTCTCCATTCTTCATTT +
Preference number: 2 (lower is better)
Translates to: LLEKWIASLATISCWLMSPRTSF*ALHSSF
Trigger: AAATGAAGAATGGAGAGCCCAGAAGCTGGTTCTGGG...GGACATGAGCCAACAGGATATTGTGGCAAGAGAAGCGATCCACTTTTCTAGTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp GAAACACTTCTAAATAAAGGAGAGGAGAACTTGGTGGCTTTAGCAAACCTCTGTTGTGCTTACAGGGTGTaGTGGAAAGGCCACTCACTG +
Preference number: 2 (lower is better)
Translates to: ETLLNKGEENLVALANLCCAYRV*WKGHSL
Trigger: CAGTGAGTGGCCTTTCCACCACACCCTGTAAGCACA...ACAGAGGTTTGCTAAAGCCACCAAGTTCTCCTCTCCTTTATTTAGAAGTGTTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp AATAAAGGAGAGGAGAACTTGGTGGCTTTAGCAAACCTCTGTGTGCAAATGGCCTTTGGAGCCCACTTCTaGGAAGATGACATACTCACT +
Preference number: 2 (lower is better)
Translates to: NKGEENLVALANLCVQMAFGAHF*EDDILT
Trigger: AGTGAGTATGTCATCTTCCCAGAAGTGGGCTCCAAA...GGCCATTTGCACACAGAGGTTTGCTAAAGCCACCAAGTTCTCCTCTCCTTTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR CAA 90 bp GTTCTTGACCTTCTGTTGTTGAAAGAAGGAATTTTCCAAGCTGACTaGCTTCATGCAAGTCCTACAGTAGCCACGAGTTGGAGTGGAAAC +
Preference number: 2 (lower is better)
Translates to: VLDLLLLKEGIFQAD*LHASPTVATSWSGN
Trigger: GTTTCCACTCCAACTCGTGGCTACTGTAGGACTTGCATGAAGCAAGTCAGCTTGGAAAATTCCTTCTTTCAACAACAGAAGGTCAAGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp TATTTATACCATTCATGCTTCAGAGTGAAGAGGACTGGTCTGGCCACCTTTGGTAGACTAAGACAGATCTaGTCACACAGGACAAGTGTC +
Preference number: 2 (lower is better)
Translates to: YLYHSCFRVKRTGLATFGRLRQI*SHRTSV
Trigger: GACACTTGTCCTGTGTGATCAGATCTGTCTTAGTCT...ACCAAAGGTGGCCAGACCAGTCCTCTTCACTCTGAAGCATGAATGGTATAAATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp GATATCAAGAAAATGTGCTGTGTTCTTCCTGTGGGTGCTGCTGACCCAGCTGGTCAATCCTGTGTATGTTaGAGCATTCAAAGAGTGTTT +
Preference number: 2 (lower is better)
Translates to: DIKKMCCVLPVGAADPAGQSCVC*SIQRVF
Trigger: AAACACTCTTTGAATGCTTCAACATACACAGGATTG...ACCAGCTGGGTCAGCAGCACCCACAGGAAGAACACAGCACATTTTCTTGATATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
3UTR-3UTR GCA 90 bp ATAACACAGGAATCCTTCTGGAACATATGTACCTCCTTTCTTTACAATGAAGGTGTCTGGGCCTTGCCCTaGACAAGAGCAGTTAAGACC +
Preference number: 2 (lower is better)
Translates to: ITQESFWNICTSFLYNEGVWALP*TRAVKT
Trigger: GGTCTTAACTGCTCTTGTGCAGGGCAAGGCCCAGAC...ACCTTCATTGTAAAGAAAGGAGGTACATATGTTCCAGAAGGATTCCTGTGTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR GCA 90 bp GCTCTTCATAGACAGGCAGACTCAAAAATGTGGTTCGGATTTCAAAATGACCCAGTGGATCGCTTCTCTTaGCACAATATCCTGTTGGCT +
Preference number: 2 (lower is better)
Translates to: ALHRQADSKMWFGFQNDPVDRFS*HNILLA
Trigger: AGCCAACAGGATATTGTGGCAAGAGAAGCGATCCAC...TGGGTCATTTTGAAATCCGAACCACATTTTTGAGTCTGCCTGTCTATGAAGAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR GCA 90 bp GGGAAACATATGGCGTGGTTACTTTCAGCAGGATCATTCCTAAGGAAAGCGACTAGTTACACTGCTATGTaGTGTGACAGTCACCTTAGT +
Preference number: 2 (lower is better)
Translates to: GKHMAWLLSAGSFLRKATSYTAM*CDSHLS
Trigger: ACTAAGGTGACTGTCACAGCACATAGCAGTGTAACT...AGTCGCTTTCCTTAGGAATGATCCTGCTGAAAGTAACCACGCCATATGTTTCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR GCA 90 bp TATTTATACCATTCATGCTTCAGAGTGAAGAGGACTGGTCTGGCCACCTTTGGTGTGGCCAGAACCAGGTaGTGTTTTCAGAAACATTTC +
Preference number: 2 (lower is better)
Translates to: YLYHSCFRVKRTGLATFGVARTR*CFQKHF
Trigger: GAAATGTTTCTGAAAACAGCACCTGGTTCTGGCCAC...ACCAAAGGTGGCCAGACCAGTCCTCTTCACTCTGAAGCATGAATGGTATAAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR GCA 90 bp CAGAACCAGGTGCTGTTTTCAGAAACATTTCCAGAAAATGTTCACTTATGGAAACAAAGGCCTTCAGGATaGGCACAATCAGCGTCTCGC +
Preference number: 2 (lower is better)
Translates to: QNQVLFSETFPENVHLWKQRPSG*AQSASR
Trigger: GCGAGACGCTGATTGTGCGCATCCTGAAGGCCTTTG...TTTCCATAAGTGAACATTTTCTGGAAATGTTTCTGAAAACAGCACCTGGTTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp ACTGTGACTGCACGAACACTGTGTTTAGAGACTGGAACAAGTGTGGAAATAACACCCAGAACCAGCTTCTaGGCTCTCCATTCTTCATTT +
Preference number: 2 (lower is better)
Translates to: TVTARTLCLETGTSVEITPRTSF*ALHSSF
Trigger: AAATGAAGAATGGAGAGCCCAGAAGCTGGTTCTGGG...TGTTATTTCCACACTTGTTCCAGTCTCTAAACACAGTGTTCGTGCAGTCACAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp GCTCTTCATAGACAGGCAGACTCAAAAATGTGGTTCGGATTTCAAAATGACCCAAGCCACGAGTTGGAGTaGAAACTCACTTTCATGTGC +
Preference number: 2 (lower is better)
Translates to: ALHRQADSKMWFGFQNDPSHELE*KLTFMC
Trigger: GCACATGAAAGTGAGTTTCCACTCCAACTCGTGGCT...TGGGTCATTTTGAAATCCGAACCACATTTTTGAGTCTGCCTGTCTATGAAGAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp CAGAACCAGGTGCTGTTTTCAGAAACATTTCCAGAAAATGTTCACTTATGGAAAGACATGCATCTGTCGTaGCAGGTGGCGCTTGAAGGA +
Preference number: 2 (lower is better)
Translates to: QNQVLFSETFPENVHLWKDMHLS*QVALEG
Trigger: TCCTTCAAGCGCCACCTGCCACGACAGATGCATGTC...TTTCCATAAGTGAACATTTTCTGGAAATGTTTCTGAAAACAGCACCTGGTTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp ACAAATGTGATCATTAACTGTGGAGTGTTGGGAAACATATGGCGTGGTTACTTTTGCCATAGTCCACGCTaGAGACATGCATCTGTCGTG +
Preference number: 2 (lower is better)
Translates to: TNVIINCGVLGNIWRGYFCHSPR*RHASVV
Trigger: CACGACAGATGCATGTCTCCAGCGTGGACTATGGCA...AAAGTAACCACGCCATATGTTTCCCAACACTCCACAGTTAATGATCACATTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp GGGAAACATATGGCGTGGTTACTTTCAGCAGGATCATTCCTAAGGAAAGCGACTGTTCGGATTTCAAAATaGCCCATTCAGAAAAGAACG +
Preference number: 2 (lower is better)
Translates to: GKHMAWLLSAGSFLRKATVRISK*PIQKRT
Trigger: CGTTCTTTTCTGAATGGGTCATTTTGAAATCCGAAC...AGTCGCTTTCCTTAGGAATGATCCTGCTGAAAGTAACCACGCCATATGTTTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR GCA 90 bp GGGAAACATATGGCGTGGTTACTTTCAGCAGGATCATTCCTAAGGAAAGCGACTCACAATGAAGTTACTTaGTTGCTGAGACTCTTGTCA +
Preference number: 2 (lower is better)
Translates to: GKHMAWLLSAGSFLRKATHNEVT*LLRLLS
Trigger: TGACAAGAGTCTCAGCAAGCAAGTAACTTCATTGTG...AGTCGCTTTCCTTAGGAATGATCCTGCTGAAAGTAACCACGCCATATGTTTCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp TATGTCTCCTCTGTGAGGGAAGAGTCCTGGTTAATAAATGGTGAAGCCTATTTAAGCCACGAGTTGGAGTaGAAACTCACTTTCATGTGC +
Preference number: 2 (lower is better)
Translates to: YVSSVREESWLINGEAYLSHELE*KLTFMC
Trigger: GCACATGAAAGTGAGTTTCCACTCCAACTCGTGGCT...TAAATAGGCTTCACCATTTATTAACCAGGACTCTTCCCTCACAGAGGAGACATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR CAA 90 bp GGAATTCCTTGGCTGTTTATGTTTCCATGGATAACACAGTGGTCATaGAAGATATCAAGAAAATGTGCTGTGTTCTTCCTGTGGGTGCTG +
Preference number: 2 (lower is better)
Translates to: GIPWLFMFPWITQWS*KISRKCAVFFLWVL
Trigger: CAGCACCCACAGGAAGAACACAGCACATTTTCTTGATATCTTCAATGACCACTGTGTTATCCATGGAAACATAAACAGCCAAGGAATTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
3UTR-3UTR TCA 90 bp CTCCAGGCTGTGACAGGGGTGGGAAGACACAAAGCAGTAATTAACAACATAATTATCCAGTCATTCTTCTaGCTAGCAGACACTTATGTA +
Preference number: 2 (lower is better)
Translates to: LQAVTGVGRHKAVINNIIIQSFF*LADTYV
Trigger: TACATAAGTGTCTGCTAGTCAGAAGAATGACTGGAT...AATTATGTTGTTAATTACTGCTTTGTGTCTTCCCACCCCTGTCACAGCCTGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp CACAATGAAGTTACTTGCTTGCTGAGACTCTTGTCACGACCTTGTGATTTTTCTAAGTTACTTGCTTGCTaGGACTCTTGTCACGACCTT +
Preference number: 2 (lower is better)
Translates to: HNEVTCLLRLLSRPCDFSKLLAC*DSCHDL
Trigger: AAGGTCGTGACAAGAGTCTCAGCAAGCAAGTAACTT...AGAAAAATCACAAGGTCGTGACAAGAGTCTCAGCAAGCAAGTAACTTCATTGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp CTCCAGGCTGTGACAGGGGTGGGAAGACACAAAGCAGTAATTAACAACATAATTAGTCAAGAAACACAATaGAGTTACTTGCTTGCTGAG +
Preference number: 2 (lower is better)
Translates to: LQAVTGVGRHKAVINNIISQETQ*SYLLAE
Trigger: CTCAGCAAGCAAGTAACTTCATTGTGTTTCTTGACT...AATTATGTTGTTAATTACTGCTTTGTGTCTTCCCACCCCTGTCACAGCCTGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp CAGAACCAGGTGCTGTTTTCAGAAACATTTCCAGAAAATGTTCACTTATGGAAATGTAAAGCTCAGGCTTaGTACGGCCAATACTGGTGG +
Preference number: 2 (lower is better)
Translates to: QNQVLFSETFPENVHLWKCKAQA*YGQYWW
Trigger: CCACCAGTATTGGCCGTATCAAGCCTGAGCTTTACA...TTTCCATAAGTGAACATTTTCTGGAAATGTTTCTGAAAACAGCACCTGGTTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp ACAAATGTGATCATTAACTGTGGAGTGTTGGGAAACATATGGCGTGGTTACTTTAGAGATTGTCCAGGATaGCCTCCCCAATCATGTCAT +
Preference number: 2 (lower is better)
Translates to: TNVIINCGVLGNIWRGYFRDCPG*PPQSCH
Trigger: ATGACATGATTGGGGAGGTCATCCTGGACAATCTCT...AAAGTAACCACGCCATATGTTTCCCAACACTCCACAGTTAATGATCACATTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp CAGAACCAGGTGCTGTTTTCAGAAACATTTCCAGAAAATGTTCACTTATGGAAACTCTACAGACTCCTATaGTCTCGTTGTGGCCAACTC +
Preference number: 2 (lower is better)
Translates to: QNQVLFSETFPENVHLWKLYRLL*SRCGQL
Trigger: GAGTTGGCCACAACGAGATCATAGGAGTCTGTAGAG...TTTCCATAAGTGAACATTTTCTGGAAATGTTTCTGAAAACAGCACCTGGTTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp GGGAAACATATGGCGTGGTTACTTTCAGCAGGATCATTCCTAAGGAAAGCGACTGCAGACTCAAAAATGTaGTTCGGATTTCAAAATGAC +
Preference number: 2 (lower is better)
Translates to: GKHMAWLLSAGSFLRKATADSKM*FGFQND
Trigger: GTCATTTTGAAATCCGAACCACATTTTTGAGTCTGC...AGTCGCTTTCCTTAGGAATGATCCTGCTGAAAGTAACCACGCCATATGTTTCCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp CACAATGAAGTTACTTGCTTGCTGAGACTCTTGTCACGACCTTGTGATTTTTCTTTTGGAGCCCACTTCTaGGAAGATGACATACTCACT +
Preference number: 2 (lower is better)
Translates to: HNEVTCLLRLLSRPCDFSFGAHF*EDDILT
Trigger: AGTGAGTATGTCATCTTCCCAGAAGTGGGCTCCAAA...AGAAAAATCACAAGGTCGTGACAAGAGTCTCAGCAAGCAAGTAACTTCATTGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp GCTCTTCATAGACAGGCAGACTCAAAAATGTGGTTCGGATTTCAAAATGACCCAGTTCGGATTTCAAAATaGCCCATTCAGAAAAGAACG +
Preference number: 2 (lower is better)
Translates to: ALHRQADSKMWFGFQNDPVRISK*PIQKRT
Trigger: CGTTCTTTTCTGAATGGGTCATTTTGAAATCCGAAC...TGGGTCATTTTGAAATCCGAACCACATTTTTGAGTCTGCCTGTCTATGAAGAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp CTTAAAATGGTGGTGACTTTATTAAGTAGCTACTCCTATAGCATGGGGCATATGAGGAATTTTCCAAGCTaGCTTGCTTCATGCAAGTCC +
Preference number: 2 (lower is better)
Translates to: LKMVVTLLSSYSYSMGHMRNFPS*LASCKS
Trigger: GGACTTGCATGAAGCAAGTCAGCTTGGAAAATTCCT...CATATGCCCCATGCTATAGGAGTAGCTACTTAATAAAGTCACCACCATTTTAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR GCA 90 bp CACAATGAAGTTACTTGCTTGCTGAGACTCTTGTCACGACCTTGTGATTTTTCTGTCCAAACAGGGCACTaGCTGGTTATAAAGACTTAT +
Preference number: 2 (lower is better)
Translates to: HNEVTCLLRLLSRPCDFSVQTGH*LVIKTY
Trigger: ATAAGTCTTTATAACCAGGCAGTGCCCTGTTTGGAC...AGAAAAATCACAAGGTCGTGACAAGAGTCTCAGCAAGCAAGTAACTTCATTGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp TTACTAGAAAAGTGGATCGCTTCTCTTGCCACAATATCCTGTTGGCTCATGTCCACTGTGTTTAGAGACTaGAACAAGTGTGGAAATAAC +
Preference number: 2 (lower is better)
Translates to: LLEKWIASLATISCWLMSTVFRD*NKCGNN
Trigger: GTTATTTCCACACTTGTTCCAGTCTCTAAACACAGT...GGACATGAGCCAACAGGATATTGTGGCAAGAGAAGCGATCCACTTTTCTAGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp ATAACACAGGAATCCTTCTGGAACATATGTACCTCCTTTCTTTACAATGAAGGTTCACTAGTAGCGTACTaGATGTCCTTCCAGATGGAG +
Preference number: 2 (lower is better)
Translates to: ITQESFWNICTSFLYNEGSLVAY*MSFQME
Trigger: CTCCATCTGGAAGGACATCCAGTACGCTACTAGTGA...ACCTTCATTGTAAAGAAAGGAGGTACATATGTTCCAGAAGGATTCCTGTGTTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp CACAATGAAGTTACTTGCTTGCTGAGACTCTTGTCACGACCTTGTGATTTTTCTAGTGAAGAGCTTCCATaGAGAATAATTTGCCTTGGA +
Preference number: 2 (lower is better)
Translates to: HNEVTCLLRLLSRPCDFSSEELP*RIICLG
Trigger: TCCAAGGCAAATTATTCTTCATGGAAGCTCTTCACT...AGAAAAATCACAAGGTCGTGACAAGAGTCTCAGCAAGCAAGTAACTTCATTGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp ATATTTGAAGAGAAAAATCATCTTTACCCACCAGTCGCTAGCACAAGGCTCATAAGAAACTTGGTGGCTTaGCTTAAAATGGTGGTGACT +
Preference number: 2 (lower is better)
Translates to: IFEEKNHLYPPVASTRLIRNLVA*LKMVVT
Trigger: AGTCACCACCATTTTAAGTCAAGCCACCAAGTTTCT...TATGAGCCTTGTGCTAGCGACTGGTGGGTAAAGATGATTTTTCTCTTCAAATAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp GAAACACTTCTAAATAAAGGAGAGGAGAACTTGGTGGCTTTAGCAAACCTCTGTATCCAGTCATTCTTCTaGCTAGCAGACACTTATGTA +
Preference number: 2 (lower is better)
Translates to: ETLLNKGEENLVALANLCIQSFF*LADTYV
Trigger: TACATAAGTGTCTGCTAGTCAGAAGAATGACTGGAT...ACAGAGGTTTGCTAAAGCCACCAAGTTCTCCTCTCCTTTATTTAGAAGTGTTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp CTTAAAATGGTGGTGACTTTATTAAGTAGCTACTCCTATAGCATGGGGCATATGAGTGAAGAGCTTCCATaGAGAATAATTTGCCTTGGA +
Preference number: 2 (lower is better)
Translates to: LKMVVTLLSSYSYSMGHMSEELP*RIICLG
Trigger: TCCAAGGCAAATTATTCTTCATGGAAGCTCTTCACT...CATATGCCCCATGCTATAGGAGTAGCTACTTAATAAAGTCACCACCATTTTAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp CACAATGAAGTTACTTGCTTGCTGAGACTCTTGTCACGACCTTGTGATTTTTCTGTTGTCAAACAAATGTaGTCATTAACTGTGGAGTGT +
Preference number: 2 (lower is better)
Translates to: HNEVTCLLRLLSRPCDFSVVKQM*SLTVEC
Trigger: ACACTCCACAGTTAATGATCACATTTGTTTGACAAC...AGAAAAATCACAAGGTCGTGACAAGAGTCTCAGCAAGCAAGTAACTTCATTGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp TATGTCTCCTCTGTGAGGGAAGAGTCCTGGTTAATAAATGGTGAAGCCTATTTATTGACCTTCTGTTGTTaGAAGAAGGAATTTTCCAAG +
Preference number: 2 (lower is better)
Translates to: YVSSVREESWLINGEAYLLTFCC*KKEFSK
Trigger: CTTGGAAAATTCCTTCTTTCAACAACAGAAGGTCAA...TAAATAGGCTTCACCATTTATTAACCAGGACTCTTCCCTCACAGAGGAGACATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp CTTAAAATGGTGGTGACTTTATTAAGTAGCTACTCCTATAGCATGGGGCATATGACACAGGAATCCTTCTaGAACATATGTACCTCCTTT +
Preference number: 2 (lower is better)
Translates to: LKMVVTLLSSYSYSMGHMTQESF*NICTSF
Trigger: AAAGGAGGTACATATGTTCCAGAAGGATTCCTGTGT...CATATGCCCCATGCTATAGGAGTAGCTACTTAATAAAGTCACCACCATTTTAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR TCA 90 bp CAGAACCAGGTGCTGTTTTCAGAAACATTTCCAGAAAATGTTCACTTATGGAAAAGTCAAGAAACACAATaGAGTTACTTGCTTGCTGAG +
Preference number: 2 (lower is better)
Translates to: QNQVLFSETFPENVHLWKSQETQ*SYLLAE
Trigger: CTCAGCAAGCAAGTAACTTCATTGTGTTTCTTGACT...TTTCCATAAGTGAACATTTTCTGGAAATGTTTCTGAAAACAGCACCTGGTTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp ATATTTGAAGAGAAAAATCATCTTTACCCACCAGTCGCTAGCACAAGGCTCATAACTGTGTTTAGAGACTaGAACAAGTGTGGAAATAAC +
Preference number: 2 (lower is better)
Translates to: IFEEKNHLYPPVASTRLITVFRD*NKCGNN
Trigger: GTTATTTCCACACTTGTTCCAGTCTCTAAACACAGT...TATGAGCCTTGTGCTAGCGACTGGTGGGTAAAGATGATTTTTCTCTTCAAATAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CCA 90 bp GAAACACTTCTAAATAAAGGAGAGGAGAACTTGGTGGCTTTAGCAAACCTCTGTGAAAATGTTCACTTATaGAAAAGAGTAGCTGGGATA +
Preference number: 2 (lower is better)
Translates to: ETLLNKGEENLVALANLCENVHL*KRVAGI
Trigger: TATCCCAGCTACTCTTTTCCATAAGTGAACATTTTC...ACAGAGGTTTGCTAAAGCCACCAAGTTCTCCTCTCCTTTATTTAGAAGTGTTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR CCA 72 bp GCCTTGCCCTGCACAAGAGCAGTTAAGACCACGGGCTaGCAGGCAGTGGCTGCTGCTGCGGCCATCACTGTG +
Preference number: 3 (lower is better)
Translates to: ALPCTRAVKTTG*QAVAAAAAITV
Trigger: CACAGTGATGGCCGCAGCAGCAGCCACTGCCTGCCAGCCCGTGGTCTTAACTGCTCTTGTGCAGGGCAAGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CAA 90 bp ATTGCTGAGTCCCATCGGCTCCGCTGTGCAGCTCATGGCGTCGGAGGTGGTTTCAGCTTATCCGCCATGTaGCCTCTGGAGCTGGGGCTC +
Preference number: 3 (lower is better)
Translates to: IAESHRLRCAAHGVGGGFSLSAM*PLELGL
Trigger: GAGCCCCAGCTCCAGAGGCAACATGGCGGATAAGCT...GAAACCACCTCCGACGCCATGAGCTGCACAGCGGAGCCGATGGGACTCAGCAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR TCA 72 bp CGCTGGAGACATGCATCTGTCGTGGCAGGTGGCGCTTaGAGGATGTGTGCCTGGTGGAGGATGCTGGCTCTG +
Preference number: 3 (lower is better)
Translates to: RWRHASVVAGGA*RMCAWWRMLAL
Trigger: CAGAGCCAGCATCCTCCACCAGGCACACATCCTTCAAGCGCCACCTGCCACGACAGATGCATGTCTCCAGCG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR CCA 72 bp GTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTaGCAGCTCGGCCCTGCCATCCTAACTCCAGTGGCT +
Preference number: 3 (lower is better)
Translates to: VSETGMSSHCRS*QLGPAILTPVA
Trigger: AGCCACTGGAGTTAGGATGGCAGGGCCGAGCTGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000136049.10
3UTR CCA 72 bp GGGGAGGGAACCCAGGAGCTAGGAGCCTTTCTGGAGTaGGTTTCCATGCCTAATGTCCACCGAGGCTGGTGG +
Preference number: 3 (lower is better)
Translates to: GEGTQELGAFLE*VSMPNVHRGWW
Trigger: CCACCAGCCTCGGTGGACATTAGGCATGGAAACCCACTCCAGAAAGGCTCCTAGCTCCTGGGTTCCCTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR CCA 72 bp CTTCAGAGTGAAGAGGACTGGTCTGGCCACCTTTGGTaGGGACTTGGGGGAGGGAACCCAGGAGCTAGGAGC +
Preference number: 3 (lower is better)
Translates to: LQSEEDWSGHLW*GLGGGNPGARS
Trigger: GCTCCTAGCTCCTGGGTTCCCTCCCCCAAGTCCCCACCAAAGGTGGCCAGACCAGTCCTCTTCACTCTGAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR CCA 72 bp GTGGCGCTTGAAGGATGTGTGCCTGGTGGAGGATGCTaGCTCTGTGGTCTGTCGCTGCAGCTTTGTGTGGCG +
Preference number: 3 (lower is better)
Translates to: VALEGCVPGGGC*LCGLSLQLCVA
Trigger: CGCCACACAAAGCTGCAGCGACAGACCACAGAGCCAGCATCCTCCACCAGGCACACATCCTTCAAGCGCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR CAA 90 bp GAAGAGGACTGGTCTGGCCACCTTTGGTGGGGACTTGGGGGAGGGAACCCAGGAGCTAAAGCAGTTGACTaGGGTGGTGAGAGGGGTGTG +
Preference number: 3 (lower is better)
Translates to: EEDWSGHLWWGLGGGNPGAKAVD*GGERGV
Trigger: CACACCCCTCTCACCACCCAAGTCAACTGCTTTAGC...TCCTGGGTTCCCTCCCCCAAGTCCCCACCAAAGGTGGCCAGACCAGTCCTCTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR GCA 72 bp CAGGTGGCGCTTGAAGGATGTGTGCCTGGTGGAGGATaGTGGCTCTGTGGTCTGTCGCTGCAGCTTTGTGTG +
Preference number: 3 (lower is better)
Translates to: QVALEGCVPGGG*WLCGLSLQLCV
Trigger: CACACAAAGCTGCAGCGACAGACCACAGAGCCAGCATCCTCCACCAGGCACACATCCTTCAAGCGCCACCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR GCA 72 bp AAGTTCTCATCAAAGGTGGGGTTCAGGGTCTTGCGGTaGACCCGGGTCTGCAGCTTGCACTTGCGGTCAGGC +
Preference number: 3 (lower is better)
Translates to: KFSSKVGFRVLR*TRVCSLHLRSG
Trigger: GCCTGACCGCAAGTGCAAGCTGCAGACCCGGGTGCACCGCAAGACCCTGAACCCCACCTTTGATGAGAACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR CCA 72 bp TGTCCACCGAGGCTGGTGGTGCTAAAGCAGTTGACTTaGGTGGTGAGAGGGGTGTGGCCAGAACCAGGTGCT +
Preference number: 3 (lower is better)
Translates to: CPPRLVVLKQLT*VVRGVWPEPGA
Trigger: AGCACCTGGTTCTGGCCACACCCCTCTCACCACCCAAGTCAACTGCTTTAGCACCACCAGCCTCGGTGGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CAA 90 bp GAGACTGGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCGCTGTGGTGGGGTTCAGGGTCTaGCGGTGCACCCGGGTCTGC +
Preference number: 3 (lower is better)
Translates to: ETGTSVEITLLSPIGSAVVGFRV*RCTRVC
Trigger: GCAGACCCGGGTGCACCGCAAGACCCTGAACCCCAC...CACAGCGGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CAA 90 bp CAGTGGTCCCTGCCAAGGCCTTCAGCATTGATCCCCACTCTACAGACTCCTATGTTGGCGGCCTCCGACTaGGCATCATCCCCATCCACT +
Preference number: 3 (lower is better)
Translates to: QWSLPRPSALIPTLQTPMLAASD*ASSPST
Trigger: AGTGGATGGGGATGATGCCAAGTCGGAGGCCGCCAA...CATAGGAGTCTGTAGAGTGGGGATCAATGCTGAAGGCCTTGGCAGGGACCACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR TCA 72 bp CCCCATCCACTGACTTCTGCTTGTAAAGCTCAGGCTTaGTACGGCCAATACTGGTGGGCTGCTCGGCGGCAG +
Preference number: 3 (lower is better)
Translates to: PHPLTSACKAQA*YGQYWWAARRQ
Trigger: CTGCCGCCGAGCAGCCCACCAGTATTGGCCGTATCAAGCCTGAGCTTTACAAGCAGAAGTCAGTGGATGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR GCA 72 bp GTGGTCTGTCGCTGCAGCTTTGTGTGGCGCATGATGTaGTCTTTGACCGACATCTGCACCTCGGCTGGGATG +
Preference number: 3 (lower is better)
Translates to: VVCRCSFVWRMM*SLTDICTSAGM
Trigger: CATCCCAGCCGAGGTGCAGATGTCGGTCAAAGAGCACATCATGCGCCACACAAAGCTGCAGCGACAGACCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR CCA 72 bp AGAATGGAACATCCCACCTGCCTAAGGGTTTCGGGGTaGCAGCTGGGCATGCTTTTGGAGCCCACTTCTGGG +
Preference number: 3 (lower is better)
Translates to: RMEHPTCLRVSG*QLGMLLEPTSG
Trigger: CCCAGAAGTGGGCTCCAAAAGCATGCCCAGCTGCCACCCCGAAACCCTTAGGCAGGTGGGATGTTCCATTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CAA 90 bp GAAGAGGACTGGTCTGGCCACCTTTGGTGGGGACTTGGGGGAGGGAACCCAGGAAGACCACATCTTGTCTaGTGTCACAGCAGTGAAGAG +
Preference number: 3 (lower is better)
Translates to: EEDWSGHLWWGLGGGNPGRPHLV*CHSSEE
Trigger: CTCTTCACTGCTGTGACACAAGACAAGATGTGGTCT...TCCTGGGTTCCCTCCCCCAAGTCCCCACCAAAGGTGGCCAGACCAGTCCTCTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CAA 90 bp GAAGAGGACTGGTCTGGCCACCTTTGGTGGGGACTTGGGGGAGGGAACCCAGGATGCCACAATATCCTGTaGGCTCATGTCCAATCCAGT +
Preference number: 3 (lower is better)
Translates to: EEDWSGHLWWGLGGGNPGCHNIL*AHVQSS
Trigger: ACTGGATTGGACATGAGCCAACAGGATATTGTGGCA...TCCTGGGTTCCCTCCCCCAAGTCCCCACCAAAGGTGGCCAGACCAGTCCTCTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CAA 90 bp GCTTTCATAGTCATAGCGGAGGCTGAAGTTGATCTTCCCACAGCTCTTGGCGGCAGCTTATCCGCCATGTaGCCTCTGGAGCTGGGGCTC +
Preference number: 3 (lower is better)
Translates to: AFIVIAEAEVDLPTALGGSLSAM*PLELGL
Trigger: GAGCCCCAGCTCCAGAGGCAACATGGCGGATAAGCT...GCCGCCAAGAGCTGTGGGAAGATCAACTTCAGCCTCCGCTATGACTATGAAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR CAA 90 bp GCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTGGAACAAGTGTGGAAGTGGGGTTCAGGGTCTaGCGGTGCACCCGGGTCTGC +
Preference number: 3 (lower is better)
Translates to: AITVTARTLCLETGTSVEVGFRV*RCTRVC
Trigger: GCAGACCCGGGTGCACCGCAAGACCCTGAACCCCAC...TTCCACACTTGTTCCAGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CAA 90 bp GAAGAGGACTGGTCTGGCCACCTTTGGTGGGGACTTGGGGGAGGGAACCCAGGATTGAGATTTCGACACTaGATCACTGTGAGGGTGAGC +
Preference number: 3 (lower is better)
Translates to: EEDWSGHLWWGLGGGNPGLRFRH*ITVRVS
Trigger: GCTCACCCTCACAGTGATCAAGTGTCGAAATCTCAA...TCCTGGGTTCCCTCCCCCAAGTCCCCACCAAAGGTGGCCAGACCAGTCCTCTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000132325.10
3UTR TCA 72 bp CTTGGCGGCCTCCGACTTGGCATCATCCCCATCCACTaGCTTCTGCTTGTAAAGCTCAGGCTTGATACGGCC +
Preference number: 3 (lower is better)
Translates to: LGGLRLGIIPIH*LLLVKLRLDTA
Trigger: GGCCGTATCAAGCCTGAGCTTTACAAGCAGAAGTCAGTGGATGGGGATGATGCCAAGTCGGAGGCCGCCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR GCA 72 bp GACAGATCTGATCACACAGGACAAGTGTCTGGGCCTTaGCCTGCACAAGAGCAGTTAAGACCACGGGCTGGC +
Preference number: 3 (lower is better)
Translates to: DRSDHTGQVSGP*PAQEQLRPRAG
Trigger: GCCAGCCCGTGGTCTTAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGATCTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR GCA 72 bp CCCTGCCATCCTAACTCCAGTGGCTGTGTCTCCGCTTaGAGCATCCACGTGAATGAAATCACAACCGAGGGG +
Preference number: 3 (lower is better)
Translates to: PCHPNSSGCVSA*SIHVNEITTEG
Trigger: CCCCTCGGTTGTGATTTCATTCACGTGGATGCTGCAAGCGGAGACACAGCCACTGGAGTTAGGATGGCAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136049.10
3UTR CCA 72 bp AATCAGAGTAGAGACACCTCTGTCCCGTGCTCAGCCTaGAAACCCCTGCTGCTCATTGTGCCCCTTCGCTTG +
Preference number: 3 (lower is better)
Translates to: NQSRDTSVPCSA*KPLLLIVPLRL
Trigger: CAAGCGAAGGGGCACAATGAGCAGCAGGGGTTTCCAGGCTGAGCACGGGACAGAGGTGTCTCTACTCTGATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
3UTR CCA 72 bp GATGCTGGCTCTGTGGTCTGTCGCTGCAGCTTTGTGTaGCGCATGATGTGCTCTTTGACCGACATCTGCACC +
Preference number: 3 (lower is better)
Translates to: DAGSVVCRCSFV*RMMCSLTDICT
Trigger: GGTGCAGATGTCGGTCAAAGAGCACATCATGCGCCACACAAAGCTGCAGCGACAGACCACAGAGCCAGCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR CCA 72 bp ATTGCCATAGTCCACGCTGGAGACATGCATCTGTCGTaGCAGGTGGCGCTTGAAGGATGTGTGCCTGGTGGA +
Preference number: 3 (lower is better)
Translates to: IAIVHAGDMHLS*QVALEGCVPGG
Trigger: TCCACCAGGCACACATCCTTCAAGCGCCACCTGCCACGACAGATGCATGTCTCCAGCGTGGACTATGGCAAT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR CAA 90 bp AGATCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGCACAAGAGCAGTTAAGCTTATCCGCCATGTaGCCTCTGGAGCTGGGGCTC +
Preference number: 3 (lower is better)
Translates to: RSDHTGQVSGPCPAQEQLSLSAM*PLELGL
Trigger: GAGCCCCAGCTCCAGAGGCAACATGGCGGATAAGCT...TAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CAA 90 bp GTGATGTCCATTGCTTTGAGATTTCGACACTTGATCACTGTGAGGGTGAGCCTGACCCGGGTCTGCAGCTaGCACTTGCGGTCAGGCAGG +
Preference number: 3 (lower is better)
Translates to: VMSIALRFRHLITVRVSLTRVCS*HLRSGR
Trigger: CCTGCCTGACCGCAAGTGCAAGCTGCAGACCCGGGT...CAGGCTCACCCTCACAGTGATCAAGTGTCGAAATCTCAAAGCAATGGACATCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR GCA 72 bp GCAGGCAGTGGCTGCTGCTGCGGCCATCACTGTGACTaGACGAACACTGTGTTTAGAGACTGGAACAAGTGT +
Preference number: 3 (lower is better)
Translates to: AGSGCCCGHHCD*TNTVFRDWNKC
Trigger: ACACTTGTTCCAGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGCCGCAGCAGCAGCCACTGCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CAA 90 bp GCTTTCATAGTCATAGCGGAGGCTGAAGTTGATCTTCCCACAGCTCTTGGCGGCACAAGTGTCTGGGCCTaGCCCTGCACAAGAGCAGTT +
Preference number: 3 (lower is better)
Translates to: AFIVIAEAEVDLPTALGGTSVWA*PCTRAV
Trigger: AACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGT...GCCGCCAAGAGCTGTGGGAAGATCAACTTCAGCCTCCGCTATGACTATGAAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CAA 90 bp GCTTTCATAGTCATAGCGGAGGCTGAAGTTGATCTTCCCACAGCTCTTGGCGGCCGCATGATGTGCTCTTaGACCGACATCTGCACCTCG +
Preference number: 3 (lower is better)
Translates to: AFIVIAEAEVDLPTALGGRMMCS*TDICTS
Trigger: CGAGGTGCAGATGTCGGTCAAAGAGCACATCATGCG...GCCGCCAAGAGCTGTGGGAAGATCAACTTCAGCCTCCGCTATGACTATGAAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR CAA 90 bp GAGACTGGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCGCTGTGCTTCCGCAAAAGTCCTaGGCAGGGAGGTCAAAGGCC +
Preference number: 3 (lower is better)
Translates to: ETGTSVEITLLSPIGSAVLPQKS*AGRSKA
Trigger: GGCCTTTGACCTCCCTGCCAAGGACTTTTGCGGAAG...CACAGCGGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CAA 90 bp GAAGAGGACTGGTCTGGCCACCTTTGGTGGGGACTTGGGGGAGGGAACCCAGGAGTGATGTCCATTGCTTaGAGATTTCGACACTTGATC +
Preference number: 3 (lower is better)
Translates to: EEDWSGHLWWGLGGGNPGVMSIA*RFRHLI
Trigger: GATCAAGTGTCGAAATCTCAAAGCAATGGACATCAC...TCCTGGGTTCCCTCCCCCAAGTCCCCACCAAAGGTGGCCAGACCAGTCCTCTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000132325.10
3UTR TCA 72 bp CAGTGGCTGTGTCTCCGCTTGCAGCATCCACGTGAATaGAATCACAACCGAGGGGTCCCCTCTTTGAAGGAT +
Preference number: 3 (lower is better)
Translates to: QWLCLRLQHPRE*NHNRGVPSLKD
Trigger: ATCCTTCAAAGAGGGGACCCCTCGGTTGTGATTTCATTCACGTGGATGCTGCAAGCGGAGACACAGCCACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136049.10
3UTR TCA 72 bp ACTCCAGTGGCTGTGTCTCCGCTTGCAGCATCCACGTaGATGAAATCACAACCGAGGGGTCCCCTCTTTGAA +
Preference number: 3 (lower is better)
Translates to: TPVAVSPLAAST*MKSQPRGPLFE
Trigger: TTCAAAGAGGGGACCCCTCGGTTGTGATTTCATTCACGTGGATGCTGCAAGCGGAGACACAGCCACTGGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136049.10
3UTR CCA 72 bp GGGGTGGCAGCTGGGCATGCTTTTGGAGCCCACTTCTaGGAAGATGACATACTCACTAATGTCTGGACTCCT +
Preference number: 3 (lower is better)
Translates to: GVAAGHAFGAHF*EDDILTNVWTP
Trigger: AGGAGTCCAGACATTAGTGAGTATGTCATCTTCCCAGAAGTGGGCTCCAAAAGCATGCCCAGCTGCCACCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR CCA 72 bp ATCTCTCCCAAGTCCACACTTTCACTAGTAGCGTACTaGATGTCCTTCCAGATGGAGGTCTCCCGGGACAGG +
Preference number: 3 (lower is better)
Translates to: ISPKSTLSLVAY*MSFQMEVSRDR
Trigger: CCTGTCCCGGGAGACCTCCATCTGGAAGGACATCCAGTACGCTACTAGTGAAAGTGTGGACTTGGGAGAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR CAA 90 bp AAGAAAATGTGCTGTGTTCTTCCTGTGGGTGCTGCTGACCCAGCTGGTGATTTTAACCCCTGCTGCTCATaGTGCCCCTTCGCTTGGGCA +
Preference number: 3 (lower is better)
Translates to: KKMCCVLPVGAADPAGDFNPCCS*CPFAWA
Trigger: TGCCCAAGCGAAGGGGCACAATGAGCAGCAGGGGTT...AAAATCACCAGCTGGGTCAGCAGCACCCACAGGAAGAACACAGCACATTTTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
3UTR-3UTR CAA 90 bp AGATCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGCACAAGAGCAGTTAGAGGCCTCAAAGAGATaGTCCAGGATGACCTCCCCA +
Preference number: 3 (lower is better)
Translates to: RSDHTGQVSGPCPAQEQLEASKR*SRMTSP
Trigger: TGGGGAGGTCATCCTGGACAATCTCTTTGAGGCCTC...TAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CAA 90 bp GAGACTGGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCGCTGTGGATGAGCAGGCTCACTaGGTCCATGTTTTCTGGGGG +
Preference number: 3 (lower is better)
Translates to: ETGTSVEITLLSPIGSAVDEQAH*VHVFWG
Trigger: CCCCCAGAAAACATGGACCAAGTGAGCCTGCTCATC...CACAGCGGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CAA 90 bp CAACCGAGGGGTCCCCTCTTTGAAGGATTTCTTTACCTCCACCAAGGAGTGCCACCAAGGCCTTCAGCATaGATCCCCACTCTACAGACT +
Preference number: 3 (lower is better)
Translates to: QPRGPLFEGFLYLHQGVPPRPSA*IPTLQT
Trigger: AGTCTGTAGAGTGGGGATCAATGCTGAAGGCCTTGG...TGGCACTCCTTGGTGGAGGTAAAGAAATCCTTCAAAGAGGGGACCCCTCGGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR CCA 72 bp CTATTTATACCATTCATGCTTCAGAGTGAAGAGGACTaGTCTGGCCACCTTTGGTGGGGACTTGGGGGAGGG +
Preference number: 3 (lower is better)
Translates to: LFIPFMLQSEED*SGHLWWGLGGG
Trigger: CCCTCCCCCAAGTCCCCACCAAAGGTGGCCAGACCAGTCCTCTTCACTCTGAAGCATGAATGGTATAAATAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR CCA 72 bp GTGCTGCCACACCTAACATTAGGCAGTACTGGGGACTaGACTCAGGATTTCATGCATGCTAGGTCAGGAGTC +
Preference number: 3 (lower is better)
Translates to: VLPHLTLGSTGD*TQDFMHARSGV
Trigger: GACTCCTGACCTAGCATGCATGAAATCCTGAGTCCAGTCCCCAGTACTGCCTAATGTTAGGTGTGGCAGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
3UTR-3UTR CAA 90 bp GCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTGGAACAAGTGTGGAAACAAGTGTCTGGGCCTaGCCCTGCACAAGAGCAGTT +
Preference number: 3 (lower is better)
Translates to: AITVTARTLCLETGTSVETSVWA*PCTRAV
Trigger: AACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGT...TTCCACACTTGTTCCAGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR-3UTR CAA 90 bp GTAGCAGAGGGAGAACATGATCTCTCCCAAGTCCACACTTTCACTAGTAGCGTAGAGGCCTCAAAGAGATaGTCCAGGATGACCTCCCCA +
Preference number: 3 (lower is better)
Translates to: VAEGEHDLSQVHTFTSSVEASKR*SRMTSP
Trigger: TGGGGAGGTCATCCTGGACAATCTCTTTGAGGCCTC...TACGCTACTAGTGAAAGTGTGGACTTGGGAGAGATCATGTTCTCCCTCTGCTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR TCA 72 bp TTCCTGTGGGTGCTGCTGACCCAGCTGGTGATTTTCTaGCTGTATCCAATCAGAGTAGAGACACCTCTGTCC +
Preference number: 3 (lower is better)
Translates to: FLWVLLTQLVIF*LYPIRVETPLS
Trigger: GGACAGAGGTGTCTCTACTCTGATTGGATACAGTCAGAAAATCACCAGCTGGGTCAGCAGCACCCACAGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
3UTR CCA 72 bp GTGCTAAAGCAGTTGACTTGGGTGGTGAGAGGGGTGTaGCCAGAACCAGGTGCTGTTTTCAGAAACATTTCC +
Preference number: 3 (lower is better)
Translates to: VLKQLTWVVRGV*PEPGAVFRNIS
Trigger: GGAAATGTTTCTGAAAACAGCACCTGGTTCTGGCCACACCCCTCTCACCACCCAAGTCAACTGCTTTAGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CAA 90 bp AATGGAACATCCCACCTGCCTAAGGGTTTCGGGGTGGCAGCTGGGCATGCTTTTTCAAAATGTTTCCAGTaGGGGAAAGCCAACAAAGAG +
Preference number: 3 (lower is better)
Translates to: NGTSHLPKGFGVAAGHAFSKCFQ*GKANKE
Trigger: CTCTTTGTTGGCTTTCCCCAACTGGAAACATTTTGA...AAAAGCATGCCCAGCTGCCACCCCGAAACCCTTAGGCAGGTGGGATGTTCCATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CAA 90 bp TGCCATCCTAACTCCAGTGGCTGTGTCTCCGCTTGCAGCATCCACGTGAATGAAATTAACTGTGGAGTGTaGGGAAACATATGGCGTGGT +
Preference number: 3 (lower is better)
Translates to: CHPNSSGCVSACSIHVNEINCGV*GNIWRG
Trigger: ACCACGCCATATGTTTCCCAACACTCCACAGTTAAT...TTCATTCACGTGGATGCTGCAAGCGGAGACACAGCCACTGGAGTTAGGATGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
3UTR-3UTR CAA 90 bp CTGTATCCAATCAGAGTAGAGACACCTCTGTCCCGTGCTCAGCCTGGAAACCCCACACAACCCAGACTTTaGTTGACATTGAAGAGAGTG +
Preference number: 3 (lower is better)
Translates to: LYPIRVETPLSRAQPGNPTQPRL*LTLKRV
Trigger: CACTCTCTTCAATGTCAACAAAAGTCTGGGTTGTGT...GGGGTTTCCAGGCTGAGCACGGGACAGAGGTGTCTCTACTCTGATTGGATACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
3UTR-3UTR CAA 90 bp TATTTATACCATTCATGCTTCAGAGTGAAGAGGACTGGTCTGGCCACCTTTGGTCTTCCGCAAAAGTCCTaGGCAGGGAGGTCAAAGGCC +
Preference number: 3 (lower is better)
Translates to: YLYHSCFRVKRTGLATFGLPQKS*AGRSKA
Trigger: GGCCTTTGACCTCCCTGCCAAGGACTTTTGCGGAAG...ACCAAAGGTGGCCAGACCAGTCCTCTTCACTCTGAAGCATGAATGGTATAAATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132325.10
3UTR TCA 72 bp GCTCCTAAGTTGATAGGGTCCGTTCTTGGAGGGCACTaGAAATACAGCCATGGCTCCATCTTTCTGGTGCAT +
Preference number: 3 (lower is better)
Translates to: APKLIGSVLGGH*KYSHGSIFLVH
Trigger: ATGCACCAGAAAGATGGAGCCATGGCTGTATTTTCAGTGCCCTCCAAGAACGGACCCTATCAACTTAGGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR CCA 72 bp GCTTCATGCAAGTCCTACAGTAGCCACGAGTTGGAGTaGAAACTCACTTTCATGTGCTTACAGGGTGTGGTG +
Preference number: 3 (lower is better)
Translates to: ASCKSYSSHELE*KLTFMCLQGVV
Trigger: CACCACACCCTGTAAGCACATGAAAGTGAGTTTCCACTCCAACTCGTGGCTACTGTAGGACTTGCATGAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CAA 90 bp CACTCTACAGACTCCTATGATCTCGTTGTGGCCAACTCTATCATAGTCCATAACCGCATGATGTGCTCTTaGACCGACATCTGCACCTCG +
Preference number: 3 (lower is better)
Translates to: HSTDSYDLVVANSIIVHNRMMCS*TDICTS
Trigger: CGAGGTGCAGATGTCGGTCAAAGAGCACATCATGCG...GTTATGGACTATGATAGAGTTGGCCACAACGAGATCATAGGAGTCTGTAGAGTG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
3UTR-3UTR CAA 90 bp CACAATGAAGTTACTTGCTTGCTGAGACTCTTGTCACGACCTTGTGATTTTTCTATCTTCCCACAGCTCTaGGCGGCCTCCGACTTGGCA +
Preference number: 3 (lower is better)
Translates to: HNEVTCLLRLLSRPCDFSIFPQL*AASDLA
Trigger: TGCCAAGTCGGAGGCCGCCAAGAGCTGTGGGAAGAT...AGAAAAATCACAAGGTCGTGACAAGAGTCTCAGCAAGCAAGTAACTTCATTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132325.10
3UTR-3UTR CAA 90 bp CAGAACCAGGTGCTGTTTTCAGAAACATTTCCAGAAAATGTTCACTTATGGAAAACCCGGGTCTGCAGCTaGCACTTGCGGTCAGGCAGG +
Preference number: 3 (lower is better)
Translates to: QNQVLFSETFPENVHLWKTRVCS*HLRSGR
Trigger: CCTGCCTGACCGCAAGTGCAAGCTGCAGACCCGGGT...TTTCCATAAGTGAACATTTTCTGGAAATGTTTCTGAAAACAGCACCTGGTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000132325.10
3UTR TCA 72 bp ATGGTGAAGCCTATTTATACCATTCATGCTTCAGAGTaGAGAGGACTGGTCTGGCCACCTTTGGTGGGGACT +
Preference number: 3 (lower is better)
Translates to: MVKPIYTIHASE*RGLVWPPLVGT
Trigger: AGTCCCCACCAAAGGTGGCCAGACCAGTCCTCTTCACTCTGAAGCATGAATGGTATAAATAGGCTTCACCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CAA 90 bp CCCAAAGACTGCTATCTTACATTGTATTTCCCAGAACCAGCTTCTGGGCTCTCCAGACCACATCTTGTCTaGTGTCACAGCAGTGAAGAG +
Preference number: 3 (lower is better)
Translates to: PKDCYLTLYFPEPASGLSRPHLV*CHSSEE
Trigger: CTCTTCACTGCTGTGACACAAGACAAGATGTGGTCT...GGAGAGCCCAGAAGCTGGTTCTGGGAAATACAATGTAAGATAGCAGTCTTTGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CAA 90 bp GCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTGGAACAAGTGTGGAACAAGAAGACCACATCTaGTCTTGTGTCACAGCAGTG +
Preference number: 3 (lower is better)
Translates to: AITVTARTLCLETGTSVEQEDHI*SCVTAV
Trigger: CACTGCTGTGACACAAGACAAGATGTGGTCTTCTTG...TTCCACACTTGTTCCAGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CAA 90 bp TCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGCACAAGAGCAGTTAAGATCAAAATGTTTCCAGTaGGGGAAAGCCAACAAAGAG +
Preference number: 3 (lower is better)
Translates to: SDHTGQVSGPCPAQEQLRSKCFQ*GKANKE
Trigger: CTCTTTGTTGGCTTTCCCCAACTGGAAACATTTTGA...TCTTAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CAA 90 bp ATATTTGAAGAGAAAAATCATCTTTACCCACCAGTCGCTAGCACAAGGCTCATAACACTGAGATGCAGCTaGCGGTCAGCCAGCTCCTCG +
Preference number: 3 (lower is better)
Translates to: IFEEKNHLYPPVASTRLITLRCS*RSASSS
Trigger: CGAGGAGCTGGCTGACCGCAAGCTGCATCTCAGTGT...TATGAGCCTTGTGCTAGCGACTGGTGGGTAAAGATGATTTTTCTCTTCAAATAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132325.10
3UTR-3UTR CAA 90 bp ATATTTGAAGAGAAAAATCATCTTTACCCACCAGTCGCTAGCACAAGGCTCATACAGCTGGGCATGCTTTaGGAGCCCACTTCTGGGAAG +
Preference number: 3 (lower is better)
Translates to: IFEEKNHLYPPVASTRLIQLGML*EPTSGK
Trigger: CTTCCCAGAAGTGGGCTCCAAAAGCATGCCCAGCTG...TATGAGCCTTGTGCTAGCGACTGGTGGGTAAAGATGATTTTTCTCTTCAAATAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CAA 90 bp TATGTCTCCTCTGTGAGGGAAGAGTCCTGGTTAATAAATGGTGAAGCCTATTTAGTGGTGCTAAAGCAGTaGACTTGGGTGGTGAGAGGG +
Preference number: 3 (lower is better)
Translates to: YVSSVREESWLINGEAYLVVLKQ*TWVVRG
Trigger: CCCTCTCACCACCCAAGTCAACTGCTTTAGCACCAC...TAAATAGGCTTCACCATTTATTAACCAGGACTCTTCCCTCACAGAGGAGACATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR CCA 72 bp GCCCACTTCTGGGAAGATGACATACTCACTAATGTCTaGACTCCTTCTGACCCAGAAAACTCAATTGGTCCT +
Preference number: 3 (lower is better)
Translates to: AHFWEDDILTNV*TPSDPENSIGP
Trigger: AGGACCAATTGAGTTTTCTGGGTCAGAAGGAGTCCAGACATTAGTGAGTATGTCATCTTCCCAGAAGTGGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR TCA 72 bp CTCCATCTTTCTGGTGCATCTCCAGGGGTCAACATTTaGTGGAGGCACAAAATTTCAGAGATTCAGTCTGCT +
Preference number: 3 (lower is better)
Translates to: LHLSGASPGVNI*WRHKISEIQSA
Trigger: AGCAGACTGAATCTCTGAAATTTTGTGCCTCCATCAAATGTTGACCCCTGGAGATGCACCAGAAAGATGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR GCA 72 bp TACTTGTATACCATGTTATACACTAGAGGTTCCCCATaGCCCCTTTCCATAAGAGGCCAAGGACTAAGAGCA +
Preference number: 3 (lower is better)
Translates to: YLYTMLYTRGSP*PLSIRGQGLRA
Trigger: TGCTCTTAGTCCTTGGCCTCTTATGGAAAGGGGGCATGGGGAACCTCTAGTGTATAACATGGTATACAAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
3UTR CCA 72 bp GAAAAGTGGATCGCTTCTCTTGCCACAATATCCTGTTaGCTCATGTCCAATCCAGTCATTCTTCTGACTAGC +
Preference number: 3 (lower is better)
Translates to: EKWIASLATISC*LMSNPVILLTS
Trigger: GCTAGTCAGAAGAATGACTGGATTGGACATGAGCCAACAGGATATTGTGGCAAGAGAAGCGATCCACTTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CAA 90 bp CAGAACCAGGTGCTGTTTTCAGAAACATTTCCAGAAAATGTTCACTTATGGAAAACAAGTGTCTGGGCCTaGCCCTGCACAAGAGCAGTT +
Preference number: 3 (lower is better)
Translates to: QNQVLFSETFPENVHLWKTSVWA*PCTRAV
Trigger: AACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGT...TTTCCATAAGTGAACATTTTCTGGAAATGTTTCTGAAAACAGCACCTGGTTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CAA 90 bp GCTCTTCATAGACAGGCAGACTCAAAAATGTGGTTCGGATTTCAAAATGACCCACAAGAAGACCACATCTaGTCTTGTGTCACAGCAGTG +
Preference number: 3 (lower is better)
Translates to: ALHRQADSKMWFGFQNDPQEDHI*SCVTAV
Trigger: CACTGCTGTGACACAAGACAAGATGTGGTCTTCTTG...TGGGTCATTTTGAAATCCGAACCACATTTTTGAGTCTGCCTGTCTATGAAGAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR TCA 72 bp CATCTTGTCTTGTGTCACAGCAGTGAAGAGCTTCCATaGAGAATAATTTGCCTTGGAGAGGCTCCTAAGTTG +
Preference number: 3 (lower is better)
Translates to: HLVLCHSSEELP*RIICLGEAPKL
Trigger: CAACTTAGGAGCCTCTCCAAGGCAAATTATTCTTCATGGAAGCTCTTCACTGCTGTGACACAAGACAAGATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR TCA 72 bp TACTCCTTCAGAGTCACAAACATATCAGAGGCCTCATaGTTTCAACACGGGACAAGAAGACCACATCTTGTC +
Preference number: 3 (lower is better)
Translates to: YSFRVTNISEAS*FQHGTRRPHLV
Trigger: GACAAGATGTGGTCTTCTTGTCCCGTGTTGAAATCATGAGGCCTCTGATATGTTTGTGACTCTGAAGGAGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CAA 90 bp TTACTAGAAAAGTGGATCGCTTCTCTTGCCACAATATCCTGTTGGCTCATGTCCGACTGCTATCTTACATaGTATTTCCCAGAACCAGCT +
Preference number: 3 (lower is better)
Translates to: LLEKWIASLATISCWLMSDCYLT*YFPEPA
Trigger: AGCTGGTTCTGGGAAATACAATGTAAGATAGCAGTC...GGACATGAGCCAACAGGATATTGTGGCAAGAGAAGCGATCCACTTTTCTAGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR GCA 72 bp GGCCCATCTAGAGTCAAGAAACACAATGAAGTTACTTaGTTGCTGAGACTCTTGTCACGACCTTGTGATTTT +
Preference number: 3 (lower is better)
Translates to: GPSRVKKHNEVT*LLRLLSRPCDF
Trigger: AAAATCACAAGGTCGTGACAAGAGTCTCAGCAAGCAAGTAACTTCATTGTGTTTCTTGACTCTAGATGGGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR TCA 72 bp CTCCTCTGTGAGGGAAGAGTCCTGGTTAATAAATGGTaGAGCCTATTTATACCATTCATGCTTCAGAGTGAA +
Preference number: 3 (lower is better)
Translates to: LLCEGRVLVNKW*SLFIPFMLQSE
Trigger: TTCACTCTGAAGCATGAATGGTATAAATAGGCTTCACCATTTATTAACCAGGACTCTTCCCTCACAGAGGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR GCA 72 bp TGGTTAATAAATGGTGAAGCCTATTTATACCATTCATaGTTCAGAGTGAAGAGGACTGGTCTGGCCACCTTT +
Preference number: 3 (lower is better)
Translates to: WLINGEAYLYHS*FRVKRTGLATF
Trigger: AAAGGTGGCCAGACCAGTCCTCTTCACTCTGAAGCATGAATGGTATAAATAGGCTTCACCATTTATTAACCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR TCA 72 bp CTAGAGTCAAGAAACACAATGAAGTTACTTGCTTGCTaGGACTCTTGTCACGACCTTGTGATTTTTCTCTCT +
Preference number: 3 (lower is better)
Translates to: LESRNTMKLLAC*DSCHDLVIFLS
Trigger: AGAGAGAAAAATCACAAGGTCGTGACAAGAGTCTCAGCAAGCAAGTAACTTCATTGTGTTTCTTGACTCTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CAA 90 bp CAGAACCAGGTGCTGTTTTCAGAAACATTTCCAGAAAATGTTCACTTATGGAAAGACTGCTATCTTACATaGTATTTCCCAGAACCAGCT +
Preference number: 3 (lower is better)
Translates to: QNQVLFSETFPENVHLWKDCYLT*YFPEPA
Trigger: AGCTGGTTCTGGGAAATACAATGTAAGATAGCAGTC...TTTCCATAAGTGAACATTTTCTGGAAATGTTTCTGAAAACAGCACCTGGTTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CAA 90 bp CACAATGAAGTTACTTGCTTGCTGAGACTCTTGTCACGACCTTGTGATTTTTCTGTTCTTGACCTTCTGTaGTTGAAAGAAGGAATTTTC +
Preference number: 3 (lower is better)
Translates to: HNEVTCLLRLLSRPCDFSVLDLL*LKEGIF
Trigger: GAAAATTCCTTCTTTCAACAACAGAAGGTCAAGAAC...AGAAAAATCACAAGGTCGTGACAAGAGTCTCAGCAAGCAAGTAACTTCATTGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CAA 90 bp GCTGTTTATGTTTCCATGGATAACACAGTGGTCATTGAAGATATCAAGAAAATGATTGTGCCCCTTCGCTaGGGCATAAACCAAATCAAT +
Preference number: 3 (lower is better)
Translates to: AVYVSMDNTVVIEDIKKMIVPLR*GINQIN
Trigger: ATTGATTTGGTTTATGCCCAAGCGAAGGGGCACAAT...CATTTTCTTGATATCTTCAATGACCACTGTGTTATCCATGGAAACATAAACAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
3UTR TCA 72 bp TTATGTAAGTTAGGGCAGCAGAGAAACTTGGTGGCTTaGCTTAAAATGGTGGTGACTTTATTAAGTAGCTAC +
Preference number: 3 (lower is better)
Translates to: LCKLGQQRNLVA*LKMVVTLLSSY
Trigger: GTAGCTACTTAATAAAGTCACCACCATTTTAAGTCAAGCCACCAAGTTTCTCTGCTGCCCTAACTTACATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR CCA 72 bp TATTGTCATTATGTCTCCTCTGTGAGGGAAGAGTCCTaGTTAATAAATGGTGAAGCCTATTTATACCATTCA +
Preference number: 3 (lower is better)
Translates to: YCHYVSSVREES*LINGEAYLYHS
Trigger: TGAATGGTATAAATAGGCTTCACCATTTATTAACCAGGACTCTTCCCTCACAGAGGAGACATAATGACAATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR-3UTR CAA 90 bp GCTGTTTATGTTTCCATGGATAACACAGTGGTCATTGAAGATATCAAGAAAATGTCAATCCTGTGTATGTaGAAGCATTCAAAGAGTGTT +
Preference number: 3 (lower is better)
Translates to: AVYVSMDNTVVIEDIKKMSILCM*KHSKSV
Trigger: AACACTCTTTGAATGCTTCAACATACACAGGATTGA...CATTTTCTTGATATCTTCAATGACCACTGTGTTATCCATGGAAACATAAACAGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
3UTR CCA 72 bp GGAATTATAAAGCTATGTATAACACAGGAATCCTTCTaGAACATATGTACCTCCTTTCTTTACAATGAAGGT +
Preference number: 3 (lower is better)
Translates to: GIIKLCITQESF*NICTSFLYNEG
Trigger: ACCTTCATTGTAAAGAAAGGAGGTACATATGTTCCAGAAGGATTCCTGTGTTATACATAGCTTTATAATTCC
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR CCA 72 bp TTGATGAATGGAATTCCTTGGCTGTTTATGTTTCCATaGATAACACAGTGGTCATTGAAGATATCAAGAAAA +
Preference number: 3 (lower is better)
Translates to: LMNGIPWLFMFP*ITQWSLKISRK
Trigger: TTTTCTTGATATCTTCAATGACCACTGTGTTATCCATGGAAACATAAACAGCCAAGGAATTCCATTCATCAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR TCA 90 bp CGAAGCTGGCAGCTCGGCCCTGCCATCCTAACTCCAGTGGCTGTGTCTCCGCTTCCACGGCGAGGAGGCTaGCAGAGGTGCCTGAGTCTG +
Preference number: 4 (lower is better)
Translates to: RSWQLGPAILTPVAVSPLPRRGG*QRCLSL
Trigger: CAGACTCAGGCACCTCTGTCAGCCTCCTCGCCGTGG...AAGCGGAGACACAGCCACTGGAGTTAGGATGGCAGGGCCGAGCTGCCAGCTTCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090697.11
CDS-3UTR GCA 90 bp GGCGTCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTGGCAGAGGGTGAGCCTGCCTaGTGTGGGCAGGTAGCAGAG +
Preference number: 4 (lower is better)
Translates to: GVGGGFGDGHELSLSKLAEGEPA*CGQVAE
Trigger: CTCTGCTACCTGCCCACAGCAGGCAGGCTCACCCTC...TGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGACGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp CTCATGGCGTCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCGAGGGTGAGCCTGCCTaGTGTGGGCAGGTAGCAGAG +
Preference number: 4 (lower is better)
Translates to: LMASEVVSETGMSSHCRSEGEPA*CGQVAE
Trigger: CTCTGCTACCTGCCCACAGCAGGCAGGCTCACCCTC...GCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGACGCCATGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp TCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTGGCAGCTCCCGCCATGTTGCCTCTaGAGCTGGGGCTCTGGAGAG +
Preference number: 4 (lower is better)
Translates to: SEVVSETGMSSHCRSWQLPPCCL*SWGSGE
Trigger: CTCTCCAGAGCCCCAGCTCCAGAGGCAACATGGCGG...GAGCTGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp TCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTGGCAGCTCCTCTGCTCCGGGGACTaGAGCTCGAAGCTCCGACAA +
Preference number: 4 (lower is better)
Translates to: SEVVSETGMSSHCRSWQLLCSGD*SSKLRQ
Trigger: TTGTCGGAGCTTCGAGCTGCAGTCCCCGGAGCAGAG...GAGCTGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000132325.10
ENSMUST00000136049.10
CDS-3UTR GCA 90 bp TCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTGGCAGCTCGTGCCTGGTGGAGGATaGTGGCTCTGTGGTCTGTCG +
Preference number: 4 (lower is better)
Translates to: SEVVSETGMSSHCRSWQLVPGGG*WLCGLS
Trigger: CGACAGACCACAGAGCCAGCATCCTCCACCAGGCAC...GAGCTGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp GAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTGGCAGCTCGGCCGCTTGAAGGATGTGTaGCTGGTGGAGGATGCTGGC +
Preference number: 4 (lower is better)
Translates to: EVVSETGMSSHCRSWQLGRLKDV*LVEDAG
Trigger: GCCAGCATCCTCCACCAGGCACACATCCTTCAAGCG...GCCGAGCTGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp GGAGACATGCATCTGTCGTGGCAGGTGGCGCTTGAAGGATGTGTGCCTGGTGGACTCTGCTCCGGGGACTaGAGCTCGAAGCTCCGACAA +
Preference number: 4 (lower is better)
Translates to: GDMHLSWQVALEGCVPGGLCSGD*SSKLRQ
Trigger: TTGTCGGAGCTTCGAGCTGCAGTCCCCGGAGCAGAG...TCCACCAGGCACACATCCTTCAAGCGCCACCTGCCACGACAGATGCATGTCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
CDS-3UTR GCA 90 bp TCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTGGCAGCTCCGCTTGAAGGATGTGTaGCTGGTGGAGGATGCTGGC +
Preference number: 4 (lower is better)
Translates to: SEVVSETGMSSHCRSWQLRLKDV*LVEDAG
Trigger: GCCAGCATCCTCCACCAGGCACACATCCTTCAAGCG...GAGCTGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp GAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTGGCAGCTCGGCTCTGCAGCTTGCACTTaGGGTCAGGCAGGAGGTAGA +
Preference number: 4 (lower is better)
Translates to: EVVSETGMSSHCRSWQLGSAACT*GQAGGR
Trigger: TCTACCTCCTGCCTGACCGCAAGTGCAAGCTGCAGA...GCCGAGCTGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp GCTGGTGGTGCTAAAGCAGTTGACTTGGGTGGTGAGAGGGGTGTGGCCAGAACCGGAAGCCCAGGGCACTaGGGTCCTTCAGCTTATCCG +
Preference number: 4 (lower is better)
Translates to: AGGAKAVDLGGERGVARTGSPGH*GPSAYP
Trigger: CGGATAAGCTGAAGGACCCCAGTGCCCTGGGCTTCC...GGTTCTGGCCACACCCCTCTCACCACCCAAGTCAACTGCTTTAGCACCACCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp TCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTGGCAGCTCAGGATGTGTGCCTGGTaGAGGATGCTGGCTCTGTGG +
Preference number: 4 (lower is better)
Translates to: SEVVSETGMSSHCRSWQLRMCAW*RMLALW
Trigger: CCACAGAGCCAGCATCCTCCACCAGGCACACATCCT...GAGCTGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
3UTR CAA 72 bp ACGCTGGAGACATGCATCTGTCGTGGCAGGTGGCGCTaGAAGGATGTGTGCCTGGTGGAGGATGCTGGCTCT +
Preference number: 4 (lower is better)
Translates to: TLETCICRGRWR*KDVCLVEDAGS
Trigger: AGAGCCAGCATCCTCCACCAGGCACACATCCTTCAAGCGCCACCTGCCACGACAGATGCATGTCTCCAGCGT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
CDS-3UTR TCA 90 bp GGCGTCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTGGCACAAGGCCTTCAGCATTaGTCCCCACTCTACAGACTC +
Preference number: 4 (lower is better)
Translates to: GVGGGFGDGHELSLSKLAQGLQH*SPLYRL
Trigger: GAGTCTGTAGAGTGGGGATCAATGCTGAAGGCCTTG...TGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGACGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp TCCAATCAGAGTAGAGACACCTCTGTCCCGTGCTCAGCCTGGAAACCCCTGCTGTTCAGGGTCTTGCGGTaGACCCGGGTCTGCAGCTTG +
Preference number: 4 (lower is better)
Translates to: SNQSRDTSVPCSAWKPLLFRVLR*TRVCSL
Trigger: CAAGCTGCAGACCCGGGTGCACCGCAAGACCCTGAA...CAGCAGGGGTTTCCAGGCTGAGCACGGGACAGAGGTGTCTCTACTCTGATTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CCA 90 bp CGAAGCTGGCAGCTCGGCCCTGCCATCCTAACTCCAGTGGCTGTGTCTCCGCTTCGCTGCAGCTTTGTGTaGCGCATGATGTGCTCTTTG +
Preference number: 4 (lower is better)
Translates to: RSWQLGPAILTPVAVSPLRCSFV*RMMCSL
Trigger: CAAAGAGCACATCATGCGCCACACAAAGCTGCAGCG...AAGCGGAGACACAGCCACTGGAGTTAGGATGGCAGGGCCGAGCTGCCAGCTTCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp TCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTGGCAGCTCAGGATGCTGGCTCTGTaGTCTGTCGCTGCAGCTTTG +
Preference number: 4 (lower is better)
Translates to: SEVVSETGMSSHCRSWQLRMLAL*SVAAAL
Trigger: CAAAGCTGCAGCGACAGACCACAGAGCCAGCATCCT...GAGCTGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp ATTGCTGAGTCCCATCGGCTCCGCTGTGCAGCTCATGGCGTCGGAGGTGGTTTCAGGATGCTGGCTCTGTaGTCTGTCGCTGCAGCTTTG +
Preference number: 4 (lower is better)
Translates to: IAESHRLRCAAHGVGGGFRMLAL*SVAAAL
Trigger: CAAAGCTGCAGCGACAGACCACAGAGCCAGCATCCT...GAAACCACCTCCGACGCCATGAGCTGCACAGCGGAGCCGATGGGACTCAGCAAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp GAAGAGGACTGGTCTGGCCACCTTTGGTGGGGACTTGGGGGAGGGAACCCAGGATTCCGCAAAAGTCCTTaGCAGGGAGGTCAAAGGCCT +
Preference number: 4 (lower is better)
Translates to: EEDWSGHLWWGLGGGNPGFRKSP*QGGQRP
Trigger: AGGCCTTTGACCTCCCTGCCAAGGACTTTTGCGGAA...TCCTGGGTTCCCTCCCCCAAGTCCCCACCAAAGGTGGCCAGACCAGTCCTCTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp CTTCTGCTTGTAAAGCTCAGGCTTGATACGGCCAATACTGGTGGGCTGCTCGGCGCATCCAGCACAGCTTaGGCAGGGGAGGCCACTGAG +
Preference number: 4 (lower is better)
Translates to: LLLVKLRLDTANTGGLLGASSTA*AGEATE
Trigger: CTCAGTGGCCTCCCCTGCCCAAGCTGTGCTGGATGC...GCCGAGCAGCCCACCAGTATTGGCCGTATCAAGCCTGAGCTTTACAAGCAGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151985.2
CDS-3UTR TCA 90 bp CTCATGGCGTCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCAGCAGAGGGAGAACATaGTCTCTCCCAAGTCCACAC +
Preference number: 4 (lower is better)
Translates to: LMASEVVSETGMSSHCRSSRGRT*SLPSPH
Trigger: GTGTGGACTTGGGAGAGATCATGTTCTCCCTCTGCT...GCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGACGCCATGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR TCA 90 bp CGAAGCTGGCAGCTCGGCCCTGCCATCCTAACTCCAGTGGCTGTGTCTCCGCTTCTCTACAGACTCCTATaGTCTCGTTGTGGCCAACTC +
Preference number: 4 (lower is better)
Translates to: RSWQLGPAILTPVAVSPLLYRLL*SRCGQL
Trigger: GAGTTGGCCACAACGAGATCATAGGAGTCTGTAGAG...AAGCGGAGACACAGCCACTGGAGTTAGGATGGCAGGGCCGAGCTGCCAGCTTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR TCA 90 bp GGCGTCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTGGCAGAGGGGTCCCCTCTTTaGAGGATTTCTTTACCTCCA +
Preference number: 4 (lower is better)
Translates to: GVGGGFGDGHELSLSKLAEGSPL*RISLPP
Trigger: TGGAGGTAAAGAAATCCTTCAAAGAGGGGACCCCTC...TGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGACGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp AATGGAACATCCCACCTGCCTAAGGGTTTCGGGGTGGCAGCTGGGCATGCTTTTGGAAGCCCAGGGCACTaGGGTCCTTCAGCTTATCCG +
Preference number: 4 (lower is better)
Translates to: NGTSHLPKGFGVAAGHAFGSPGH*GPSAYP
Trigger: CGGATAAGCTGAAGGACCCCAGTGCCCTGGGCTTCC...AAAAGCATGCCCAGCTGCCACCCCGAAACCCTTAGGCAGGTGGGATGTTCCATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp TTCCAGATGGAGGTCTCCCGGGACAGGTCAGAGGCCTCAAAGAGATTGTCCAGGGAGTGGAGAGGGACCTaGGTCTCCCAGTACCTGAGT +
Preference number: 4 (lower is better)
Translates to: FQMEVSRDRSEASKRLSREWRGT*VSQYLS
Trigger: ACTCAGGTACTGGGAGACCCAGGTCCCTCTCCACTC...CCTGGACAATCTCTTTGAGGCCTCTGACCTGTCCCGGGAGACCTCCATCTGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151985.2
3UTR CAA 72 bp TGTCGCTGCAGCTTTGTGTGGCGCATGATGTGCTCTTaGACCGACATCTGCACCTCGGCTGGGATGTCTGGG +
Preference number: 4 (lower is better)
Translates to: CRCSFVWRMMCS*TDICTSAGMSG
Trigger: CCCAGACATCCCAGCCGAGGTGCAGATGTCGGTCAAAGAGCACATCATGCGCCACACAAAGCTGCAGCGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
CDS-3UTR TCA 90 bp CTGTATCCAATCAGAGTAGAGACACCTCTGTCCCGTGCTCAGCCTGGAAACCCCCTGGGGAAGTGTGGCTaGTCTTCACAGCTGCCTCCA +
Preference number: 4 (lower is better)
Translates to: LYPIRVETPLSRAQPGNPLGKCG*SSQLPP
Trigger: TGGAGGCAGCTGTGAAGATCAGCCACACTTCCCCAG...GGGGTTTCCAGGCTGAGCACGGGACAGAGGTGTCTCTACTCTGATTGGATACAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR TCA 90 bp TCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTGGCAGCTCTGTAAAGCTCAGGCTTaGTACGGCCAATACTGGTGG +
Preference number: 4 (lower is better)
Translates to: SEVVSETGMSSHCRSWQLCKAQA*YGQYWW
Trigger: CCACCAGTATTGGCCGTATCAAGCCTGAGCTTTACA...GAGCTGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp CTGTATCCAATCAGAGTAGAGACACCTCTGTCCCGTGCTCAGCCTGGAAACCCCGCTTATCCGCCATGTTaGCTCTGGAGCTGGGGCTCT +
Preference number: 4 (lower is better)
Translates to: LYPIRVETPLSRAQPGNPAYPPC*LWSWGS
Trigger: AGAGCCCCAGCTCCAGAGGCAACATGGCGGATAAGC...GGGGTTTCCAGGCTGAGCACGGGACAGAGGTGTCTCTACTCTGATTGGATACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR GCA 90 bp GCTGGTGGTGCTAAAGCAGTTGACTTGGGTGGTGAGAGGGGTGTGGCCAGAACCTCTTTGACCGACATCTaGACCTCGGCTGGGATGTCT +
Preference number: 4 (lower is better)
Translates to: AGGAKAVDLGGERGVARTSLTDI*TSAGMS
Trigger: AGACATCCCAGCCGAGGTGCAGATGTCGGTCAAAGA...GGTTCTGGCCACACCCCTCTCACCACCCAAGTCAACTGCTTTAGCACCACCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp CTGACTGTATCCAATCAGAGTAGAGACACCTCTGTCCCGTGCTCAGCCTGGAAACCCGGGTCTGCAGCTTaGACTTGCGGTCAGGCAGGA +
Preference number: 4 (lower is better)
Translates to: LTVSNQSRDTSVPCSAWKPGSAA*TCGQAG
Trigger: TCCTGCCTGACCGCAAGTGCAAGCTGCAGACCCGGG...TTTCCAGGCTGAGCACGGGACAGAGGTGTCTCTACTCTGATTGGATACAGTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR GCA 90 bp TGCCATCCTAACTCCAGTGGCTGTGTCTCCGCTTGCAGCATCCACGTGAATGAATTCAGGGTCTTGCGGTaGACCCGGGTCTGCAGCTTG +
Preference number: 4 (lower is better)
Translates to: CHPNSSGCVSACSIHVNEFRVLR*TRVCSL
Trigger: CAAGCTGCAGACCCGGGTGCACCGCAAGACCCTGAA...TTCATTCACGTGGATGCTGCAAGCGGAGACACAGCCACTGGAGTTAGGATGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp GTGTGTGCTGCCACACCTAACATTAGGCAGTACTGGGGACTGGACTCAGGATTTGAGGGTGAGCCTGCCTaGTGTGGGCAGGTAGCAGAG +
Preference number: 4 (lower is better)
Translates to: VCAATPNIRQYWGLDSGFEGEPA*CGQVAE
Trigger: CTCTGCTACCTGCCCACAGCAGGCAGGCTCACCCTC...AAATCCTGAGTCCAGTCCCCAGTACTGCCTAATGTTAGGTGTGGCAGCACACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CCA 90 bp CGAAGCTGGCAGCTCGGCCCTGCCATCCTAACTCCAGTGGCTGTGTCTCCGCTTTCACTAGTAGCGTACTaGATGTCCTTCCAGATGGAG +
Preference number: 4 (lower is better)
Translates to: RSWQLGPAILTPVAVSPLSLVAY*MSFQME
Trigger: CTCCATCTGGAAGGACATCCAGTACGCTACTAGTGA...AAGCGGAGACACAGCCACTGGAGTTAGGATGGCAGGGCCGAGCTGCCAGCTTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp ATTGCTGAGTCCCATCGGCTCCGCTGTGCAGCTCATGGCGTCGGAGGTGGTTTCAACATCTCATTCCAGTaGTCCCTGCCAAGGCCTTCA +
Preference number: 4 (lower is better)
Translates to: IAESHRLRCAAHGVGGGFNISFQ*SLPRPS
Trigger: TGAAGGCCTTGGCAGGGACCACTGGAATGAGATGTT...GAAACCACCTCCGACGCCATGAGCTGCACAGCGGAGCCGATGGGACTCAGCAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp TCCTTCCAGATGGAGGTCTCCCGGGACAGGTCAGAGGCCTCAAAGAGATTGTCCAGAGAAATCCAGGAGTaGAGAGGGACCTGGGTCTCC +
Preference number: 4 (lower is better)
Translates to: SFQMEVSRDRSEASKRLSREIQE*RGTWVS
Trigger: GGAGACCCAGGTCCCTCTCCACTCCTGGATTTCTCT...GGACAATCTCTTTGAGGCCTCTGACCTGTCCCGGGAGACCTCCATCTGGAAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151985.2
CDS-3UTR TCA 90 bp TCCAATCAGAGTAGAGACACCTCTGTCCCGTGCTCAGCCTGGAAACCCCTGCTGAGCAGAGGGAGAACATaGTCTCTCCCAAGTCCACAC +
Preference number: 4 (lower is better)
Translates to: SNQSRDTSVPCSAWKPLLSRGRT*SLPSPH
Trigger: GTGTGGACTTGGGAGAGATCATGTTCTCCCTCTGCT...CAGCAGGGGTTTCCAGGCTGAGCACGGGACAGAGGTGTCTCTACTCTGATTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR TCA 90 bp GCTGGTGGTGCTAAAGCAGTTGACTTGGGTGGTGAGAGGGGTGTGGCCAGAACCCTCTACAGACTCCTATaGTCTCGTTGTGGCCAACTC +
Preference number: 4 (lower is better)
Translates to: AGGAKAVDLGGERGVARTLYRLL*SRCGQL
Trigger: GAGTTGGCCACAACGAGATCATAGGAGTCTGTAGAG...GGTTCTGGCCACACCCCTCTCACCACCCAAGTCAACTGCTTTAGCACCACCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp GAAAAGACTAAGACAGATCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGCCCGGGTCTGCAGCTTaGACTTGCGGTCAGGCAGGA +
Preference number: 4 (lower is better)
Translates to: EKTKTDLITQDKCLGLALPGSAA*TCGQAG
Trigger: TCCTGCCTGACCGCAAGTGCAAGCTGCAGACCCGGG...CAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGATCTGTCTTAGTCTTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR TCA 90 bp AGATCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGCACAAGAGCAGTTACTGGGGAAGTGTGGCTaGTCTTCACAGCTGCCTCCA +
Preference number: 4 (lower is better)
Translates to: RSDHTGQVSGPCPAQEQLLGKCG*SSQLPP
Trigger: TGGAGGCAGCTGTGAAGATCAGCCACACTTCCCCAG...TAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR TCA 90 bp AATGGAACATCCCACCTGCCTAAGGGTTTCGGGGTGGCAGCTGGGCATGCTTTTCAAGGCCTTCAGCATTaGTCCCCACTCTACAGACTC +
Preference number: 4 (lower is better)
Translates to: NGTSHLPKGFGVAAGHAFQGLQH*SPLYRL
Trigger: GAGTCTGTAGAGTGGGGATCAATGCTGAAGGCCTTG...AAAAGCATGCCCAGCTGCCACCCCGAAACCCTTAGGCAGGTGGGATGTTCCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp AGAAAATGTGCTGTGTTCTTCCTGTGGGTGCTGCTGACCCAGCTGGTGATTTTCGTGCCTGGTGGAGGATaGTGGCTCTGTGGTCTGTCG +
Preference number: 4 (lower is better)
Translates to: RKCAVFFLWVLLTQLVIFVPGGG*WLCGLS
Trigger: CGACAGACCACAGAGCCAGCATCCTCCACCAGGCAC...GAAAATCACCAGCTGGGTCAGCAGCACCCACAGGAAGAACACAGCACATTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CCA 90 bp CTGTATCCAATCAGAGTAGAGACACCTCTGTCCCGTGCTCAGCCTGGAAACCCCTGCCATAGTCCACGCTaGAGACATGCATCTGTCGTG +
Preference number: 4 (lower is better)
Translates to: LYPIRVETPLSRAQPGNPCHSPR*RHASVV
Trigger: CACGACAGATGCATGTCTCCAGCGTGGACTATGGCA...GGGGTTTCCAGGCTGAGCACGGGACAGAGGTGTCTCTACTCTGATTGGATACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
3UTR CAA 72 bp TGCCTAAGGGTTTCGGGGTGGCAGCTGGGCATGCTTTaGGAGCCCACTTCTGGGAAGATGACATACTCACTA +
Preference number: 4 (lower is better)
Translates to: CLRVSGWQLGML*EPTSGKMTYSL
Trigger: TAGTGAGTATGTCATCTTCCCAGAAGTGGGCTCCAAAAGCATGCCCAGCTGCCACCCCGAAACCCTTAGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
CDS-3UTR GCA 90 bp AATCAGCGTCTCGCTTTCATAGTCATAGCGGAGGCTGAAGTTGATCTTCCCACACTCTGCTCCGGGGACTaGAGCTCGAAGCTCCGACAA +
Preference number: 4 (lower is better)
Translates to: NQRLAFIVIAEAEVDLPTLCSGD*SSKLRQ
Trigger: TTGTCGGAGCTTCGAGCTGCAGTCCCCGGAGCAGAG...TGTGGGAAGATCAACTTCAGCCTCCGCTATGACTATGAAAGCGAGACGCTGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
ENSMUST00000151985.2
CDS-3UTR GCA 90 bp GCTCACAGTCAGGAACTTTTTGCCAGGCAGCATCCATCTCCTTCCTCATTGCATGCTTATCCGCCATGTTaGCTCTGGAGCTGGGGCTCT +
Preference number: 4 (lower is better)
Translates to: AHSQELFARQHPSPSSLHAYPPC*LWSWGS
Trigger: AGAGCCCCAGCTCCAGAGGCAACATGGCGGATAAGC...ATGCAATGAGGAAGGAGATGGATGCTGCCTGGCAAAAAGTTCCTGACTGTGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR GCA 90 bp GTGTGTGCTGCCACACCTAACATTAGGCAGTACTGGGGACTGGACTCAGGATTTTCTGCAGCTTGCACTTaGGGTCAGGCAGGAGGTAGA +
Preference number: 4 (lower is better)
Translates to: VCAATPNIRQYWGLDSGFSAACT*GQAGGR
Trigger: TCTACCTCCTGCCTGACCGCAAGTGCAAGCTGCAGA...AAATCCTGAGTCCAGTCCCCAGTACTGCCTAATGTTAGGTGTGGCAGCACACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR GCA 90 bp TGCCATCCTAACTCCAGTGGCTGTGTCTCCGCTTGCAGCATCCACGTGAATGAATCAAAGACACTGAGATaGAGCTTGCGGTCAGCCAGC +
Preference number: 4 (lower is better)
Translates to: CHPNSSGCVSACSIHVNESKTLR*SLRSAS
Trigger: GCTGGCTGACCGCAAGCTGCATCTCAGTGTCTTTGA...TTCATTCACGTGGATGCTGCAAGCGGAGACACAGCCACTGGAGTTAGGATGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp ATTGCTGAGTCCCATCGGCTCCGCTGTGCAGCTCATGGCGTCGGAGGTGGTTTCGCCTGTGATGTCCATTaGTTTGAGATTTCGACACTT +
Preference number: 4 (lower is better)
Translates to: IAESHRLRCAAHGVGGGFACDVH*FEISTL
Trigger: AAGTGTCGAAATCTCAAAGCAATGGACATCACAGGC...GAAACCACCTCCGACGCCATGAGCTGCACAGCGGAGCCGATGGGACTCAGCAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp GAAGATATCAAGAAAATGTGCTGTGTTCTTCCTGTGGGTGCTGCTGACCCAGCTGGAAGCCCAGGGCACTaGGGTCCTTCAGCTTATCCG +
Preference number: 4 (lower is better)
Translates to: EDIKKMCCVLPVGAADPAGSPGH*GPSAYP
Trigger: CGGATAAGCTGAAGGACCCCAGTGCCCTGGGCTTCC...AGCTGGGTCAGCAGCACCCACAGGAAGAACACAGCACATTTTCTTGATATCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR TCA 90 bp AATGCTCACAGTCAGGAACTTTTTGCCAGGCAGCATCCATCTCCTTCCTCATTGCTGGGGAAGTGTGGCTaGTCTTCACAGCTGCCTCCA +
Preference number: 4 (lower is better)
Translates to: NAHSQELFARQHPSPSSLLGKCG*SSQLPP
Trigger: TGGAGGCAGCTGTGAAGATCAGCCACACTTCCCCAG...CAATGAGGAAGGAGATGGATGCTGCCTGGCAAAAAGTTCCTGACTGTGAGCATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR TCA 90 bp GTGGCTGCTGCTGCGGCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTATCATCCCCATCCACTaGCTTCTGCTTGTAAAGCTC +
Preference number: 4 (lower is better)
Translates to: VAAAAAITVTARTLCLETIIPIH*LLLVKL
Trigger: GAGCTTTACAAGCAGAAGTCAGTGGATGGGGATGAT...AGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGCCGCAGCAGCAGCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR TCA 90 bp GAGACTGGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCGCTGTGAGCAGAGGGAGAACATaGTCTCTCCCAAGTCCACAC +
Preference number: 4 (lower is better)
Translates to: ETGTSVEITLLSPIGSAVSRGRT*SLPSPH
Trigger: GTGTGGACTTGGGAGAGATCATGTTCTCCCTCTGCT...CACAGCGGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR TCA 90 bp ATAGTGTGTGCTGCCACACCTAACATTAGGCAGTACTGGGGACTGGACTCAGGAAGCAGAGGGAGAACATaGTCTCTCCCAAGTCCACAC +
Preference number: 4 (lower is better)
Translates to: IVCAATPNIRQYWGLDSGSRGRT*SLPSPH
Trigger: GTGTGGACTTGGGAGAGATCATGTTCTCCCTCTGCT...TCCTGAGTCCAGTCCCCAGTACTGCCTAATGTTAGGTGTGGCAGCACACACTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR GCA 90 bp GGGAAACATATGGCGTGGTTACTTTCAGCAGGATCATTCCTAAGGAAAGCGACTCTCTGCTCCGGGGACTaGAGCTCGAAGCTCCGACAA +
Preference number: 4 (lower is better)
Translates to: GKHMAWLLSAGSFLRKATLCSGD*SSKLRQ
Trigger: TTGTCGGAGCTTCGAGCTGCAGTCCCCGGAGCAGAG...AGTCGCTTTCCTTAGGAATGATCCTGCTGAAAGTAACCACGCCATATGTTTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000132325.10
CDS-3UTR GCA 90 bp GAGACTGGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCGCTGTGGTGTGGCGCATGATGTaGTCTTTGACCGACATCTGC +
Preference number: 4 (lower is better)
Translates to: ETGTSVEITLLSPIGSAVVWRMM*SLTDIC
Trigger: GCAGATGTCGGTCAAAGAGCACATCATGCGCCACAC...CACAGCGGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp GTGTGTGCTGCCACACCTAACATTAGGCAGTACTGGGGACTGGACTCAGGATTTGTGTGGCGCATGATGTaGTCTTTGACCGACATCTGC +
Preference number: 4 (lower is better)
Translates to: VCAATPNIRQYWGLDSGFVWRMM*SLTDIC
Trigger: GCAGATGTCGGTCAAAGAGCACATCATGCGCCACAC...AAATCCTGAGTCCAGTCCCCAGTACTGCCTAATGTTAGGTGTGGCAGCACACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR GCA 90 bp AATGCTCACAGTCAGGAACTTTTTGCCAGGCAGCATCCATCTCCTTCCTCATTGCGCTTGAAGGATGTGTaGCTGGTGGAGGATGCTGGC +
Preference number: 4 (lower is better)
Translates to: NAHSQELFARQHPSPSSLRLKDV*LVEDAG
Trigger: GCCAGCATCCTCCACCAGGCACACATCCTTCAAGCG...CAATGAGGAAGGAGATGGATGCTGCCTGGCAAAAAGTTCCTGACTGTGAGCATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR GCA 90 bp GATATCAAGAAAATGTGCTGTGTTCTTCCTGTGGGTGCTGCTGACCCAGCTGGTCAAAGGCCTTCAGGATaGGCACAATCAGCGTCTCGC +
Preference number: 4 (lower is better)
Translates to: DIKKMCCVLPVGAADPAGQRPSG*AQSASR
Trigger: GCGAGACGCTGATTGTGCGCATCCTGAAGGCCTTTG...ACCAGCTGGGTCAGCAGCACCCACAGGAAGAACACAGCACATTTTCTTGATATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR GCA 90 bp CTCCAGGCTGTGACAGGGGTGGGAAGACACAAAGCAGTAATTAACAACATAATTCGGTGCACCCGGGTCTaGAGCTTGCACTTGCGGTCA +
Preference number: 4 (lower is better)
Translates to: LQAVTGVGRHKAVINNIIRCTRV*SLHLRS
Trigger: TGACCGCAAGTGCAAGCTGCAGACCCGGGTGCACCG...AATTATGTTGTTAATTACTGCTTTGTGTCTTCCCACCCCTGTCACAGCCTGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp ATGTGCTGTGTTCTTCCTGTGGGTGCTGCTGACCCAGCTGGTGATTTTCTGACTGACCAGACTTTTCATTaGCTGCAGTCTCCACAGCGG +
Preference number: 4 (lower is better)
Translates to: MCCVLPVGAADPAGDFLTDQTFH*LQSPQR
Trigger: CCGCTGTGGAGACTGCAGGCAATGAAAAGTCTGGTC...AGTCAGAAAATCACCAGCTGGGTCAGCAGCACCCACAGGAAGAACACAGCACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CCA 90 bp GATATCAAGAAAATGTGCTGTGTTCTTCCTGTGGGTGCTGCTGACCCAGCTGGTATCTGTCGTGGCAGGTaGCGCTTGAAGGATGTGTGC +
Preference number: 4 (lower is better)
Translates to: DIKKMCCVLPVGAADPAGICRGR*RLKDVC
Trigger: GCACACATCCTTCAAGCGCCACCTGCCACGACAGAT...ACCAGCTGGGTCAGCAGCACCCACAGGAAGAACACAGCACATTTTCTTGATATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CCA 90 bp GCTCACAGTCAGGAACTTTTTGCCAGGCAGCATCCATCTCCTTCCTCATTGCATGACATGCATCTGTCGTaGCAGGTGGCGCTTGAAGGA +
Preference number: 4 (lower is better)
Translates to: AHSQELFARQHPSPSSLHDMHLS*QVALEG
Trigger: TCCTTCAAGCGCCACCTGCCACGACAGATGCATGTC...ATGCAATGAGGAAGGAGATGGATGCTGCCTGGCAAAAAGTTCCTGACTGTGAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CCA 90 bp GGTGCTGCTGACCCAGCTGGTGATTTTCTGACTGTATCCAATCAGAGTAGAGACGACATGCATCTGTCGTaGCAGGTGGCGCTTGAAGGA +
Preference number: 4 (lower is better)
Translates to: GAADPAGDFLTVSNQSRDDMHLS*QVALEG
Trigger: TCCTTCAAGCGCCACCTGCCACGACAGATGCATGTC...GTCTCTACTCTGATTGGATACAGTCAGAAAATCACCAGCTGGGTCAGCAGCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CCA 90 bp AGATCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGCACAAGAGCAGTTATGCCATAGTCCACGCTaGAGACATGCATCTGTCGTG +
Preference number: 4 (lower is better)
Translates to: RSDHTGQVSGPCPAQEQLCHSPR*RHASVV
Trigger: CACGACAGATGCATGTCTCCAGCGTGGACTATGGCA...TAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGATCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp GAGACTGGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCGCTGTGTTCCGCAAAAGTCCTTaGCAGGGAGGTCAAAGGCCT +
Preference number: 4 (lower is better)
Translates to: ETGTSVEITLLSPIGSAVFRKSP*QGGQRP
Trigger: AGGCCTTTGACCTCCCTGCCAAGGACTTTTGCGGAA...CACAGCGGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp GTGTGTGCTGCCACACCTAACATTAGGCAGTACTGGGGACTGGACTCAGGATTTTTCCGCAAAAGTCCTTaGCAGGGAGGTCAAAGGCCT +
Preference number: 4 (lower is better)
Translates to: VCAATPNIRQYWGLDSGFFRKSP*QGGQRP
Trigger: AGGCCTTTGACCTCCCTGCCAAGGACTTTTGCGGAA...AAATCCTGAGTCCAGTCCCCAGTACTGCCTAATGTTAGGTGTGGCAGCACACAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR TCA 90 bp TGTTTAGAGACTGGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCCTGGGGAAGTGTGGCTaGTCTTCACAGCTGCCTCCA +
Preference number: 4 (lower is better)
Translates to: CLETGTSVEITLLSPIGSLGKCG*SSQLPP
Trigger: TGGAGGCAGCTGTGAAGATCAGCCACACTTCCCCAG...GGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTCTAAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR TCA 90 bp GAGACTGGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCGCTGTGTGTAAAGCTCAGGCTTaGTACGGCCAATACTGGTGG +
Preference number: 4 (lower is better)
Translates to: ETGTSVEITLLSPIGSAVCKAQA*YGQYWW
Trigger: CCACCAGTATTGGCCGTATCAAGCCTGAGCTTTACA...CACAGCGGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR TCA 90 bp ATGTGCTGTGTTCTTCCTGTGGGTGCTGCTGACCCAGCTGGTGATTTTCTGACTTGTAAAGCTCAGGCTTaGTACGGCCAATACTGGTGG +
Preference number: 4 (lower is better)
Translates to: MCCVLPVGAADPAGDFLTCKAQA*YGQYWW
Trigger: CCACCAGTATTGGCCGTATCAAGCCTGAGCTTTACA...AGTCAGAAAATCACCAGCTGGGTCAGCAGCACCCACAGGAAGAACACAGCACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR TCA 90 bp TCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGCACAAGAGCAGTTAAGAGAGGGGTCCCCTCTTTaGAGGATTTCTTTACCTCCA +
Preference number: 4 (lower is better)
Translates to: SDHTGQVSGPCPAQEQLREGSPL*RISLPP
Trigger: TGGAGGTAAAGAAATCCTTCAAAGAGGGGACCCCTC...TCTTAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp AATAAAGGAGAGGAGAACTTGGTGGCTTTAGCAAACCTCTGTGTGCAAATGGCCGCTTATCCGCCATGTTaGCTCTGGAGCTGGGGCTCT +
Preference number: 4 (lower is better)
Translates to: NKGEENLVALANLCVQMAAYPPC*LWSWGS
Trigger: AGAGCCCCAGCTCCAGAGGCAACATGGCGGATAAGC...GGCCATTTGCACACAGAGGTTTGCTAAAGCCACCAAGTTCTCCTCTCCTTTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp GCTCACAGTCAGGAACTTTTTGCCAGGCAGCATCCATCTCCTTCCTCATTGCATTCTTTGACCGACATCTaGACCTCGGCTGGGATGTCT +
Preference number: 4 (lower is better)
Translates to: AHSQELFARQHPSPSSLHSLTDI*TSAGMS
Trigger: AGACATCCCAGCCGAGGTGCAGATGTCGGTCAAAGA...ATGCAATGAGGAAGGAGATGGATGCTGCCTGGCAAAAAGTTCCTGACTGTGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR GCA 90 bp ATGACTTATAAAATGCTCACAGTCAGGAACTTTTTGCCAGGCAGCATCCATCTCCGGTGCACCCGGGTCTaGAGCTTGCACTTGCGGTCA +
Preference number: 4 (lower is better)
Translates to: MTYKMLTVRNFLPGSIHLRCTRV*SLHLRS
Trigger: TGACCGCAAGTGCAAGCTGCAGACCCGGGTGCACCG...GAGATGGATGCTGCCTGGCAAAAAGTTCCTGACTGTGAGCATTTTATAAGTCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR GCA 90 bp ACACAGTGGTCATTGAAGATATCAAGAAAATGTGCTGTGTTCTTCCTGTGGGTGCGGTGCACCCGGGTCTaGAGCTTGCACTTGCGGTCA +
Preference number: 4 (lower is better)
Translates to: TQWSLKISRKCAVFFLWVRCTRV*SLHLRS
Trigger: TGACCGCAAGTGCAAGCTGCAGACCCGGGTGCACCG...CACCCACAGGAAGAACACAGCACATTTTCTTGATATCTTCAATGACCACTGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR GCA 90 bp TTACTAGAAAAGTGGATCGCTTCTCTTGCCACAATATCCTGTTGGCTCATGTCCTTCAGGGTCTTGCGGTaGACCCGGGTCTGCAGCTTG +
Preference number: 4 (lower is better)
Translates to: LLEKWIASLATISCWLMSFRVLR*TRVCSL
Trigger: CAAGCTGCAGACCCGGGTGCACCGCAAGACCCTGAA...GGACATGAGCCAACAGGATATTGTGGCAAGAGAAGCGATCCACTTTTCTAGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp GCTCTTCATAGACAGGCAGACTCAAAAATGTGGTTCGGATTTCAAAATGACCCATGGGGTTCAGGGTCTTaGGGTGCACCCGGGTCTGCA +
Preference number: 4 (lower is better)
Translates to: ALHRQADSKMWFGFQNDPWGSGS*GAPGSA
Trigger: TGCAGACCCGGGTGCACCGCAAGACCCTGAACCCCA...TGGGTCATTTTGAAATCCGAACCACATTTTTGAGTCTGCCTGTCTATGAAGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp GAAGATATCAAGAAAATGTGCTGTGTTCTTCCTGTGGGTGCTGCTGACCCAGCTAGGATGCTGGCTCTGTaGTCTGTCGCTGCAGCTTTG +
Preference number: 4 (lower is better)
Translates to: EDIKKMCCVLPVGAADPARMLAL*SVAAAL
Trigger: CAAAGCTGCAGCGACAGACCACAGAGCCAGCATCCT...AGCTGGGTCAGCAGCACCCACAGGAAGAACACAGCACATTTTCTTGATATCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CCA 90 bp TTACTAGAAAAGTGGATCGCTTCTCTTGCCACAATATCCTGTTGGCTCATGTCCCCTGGTGGAGGATGCTaGCTCTGTGGTCTGTCGCTG +
Preference number: 4 (lower is better)
Translates to: LLEKWIASLATISCWLMSPGGGC*LCGLSL
Trigger: CAGCGACAGACCACAGAGCCAGCATCCTCCACCAGG...GGACATGAGCCAACAGGATATTGTGGCAAGAGAAGCGATCCACTTTTCTAGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp TCCATCTTTCTGGTGCATCTCCAGGGGTCAACATTTGATGGAGGCACAAAATTTCCTGGTGGAGGATGCTaGCTCTGTGGTCTGTCGCTG +
Preference number: 4 (lower is better)
Translates to: SIFLVHLQGSTFDGGTKFPGGGC*LCGLSL
Trigger: CAGCGACAGACCACAGAGCCAGCATCCTCCACCAGG...AAATTTTGTGCCTCCATCAAATGTTGACCCCTGGAGATGCACCAGAAAGATGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp AGAAAATGTGCTGTGTTCTTCCTGTGGGTGCTGCTGACCCAGCTGGTGATTTTCTTCCGCAAAAGTCCTTaGCAGGGAGGTCAAAGGCCT +
Preference number: 4 (lower is better)
Translates to: RKCAVFFLWVLLTQLVIFFRKSP*QGGQRP
Trigger: AGGCCTTTGACCTCCCTGCCAAGGACTTTTGCGGAA...GAAAATCACCAGCTGGGTCAGCAGCACCCACAGGAAGAACACAGCACATTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CCA 90 bp AATAAAGGAGAGGAGAACTTGGTGGCTTTAGCAAACCTCTGTGTGCAAATGGCCGGATGTCCTTCCAGATaGAGGTCTCCCGGGACAGGT +
Preference number: 4 (lower is better)
Translates to: NKGEENLVALANLCVQMAGCPSR*RSPGTG
Trigger: ACCTGTCCCGGGAGACCTCCATCTGGAAGGACATCC...GGCCATTTGCACACAGAGGTTTGCTAAAGCCACCAAGTTCTCCTCTCCTTTATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp TGCCATCCTAACTCCAGTGGCTGTGTCTCCGCTTGCAGCATCCACGTGAATGAATCACTAGTAGCGTACTaGATGTCCTTCCAGATGGAG +
Preference number: 4 (lower is better)
Translates to: CHPNSSGCVSACSIHVNESLVAY*MSFQME
Trigger: CTCCATCTGGAAGGACATCCAGTACGCTACTAGTGA...TTCATTCACGTGGATGCTGCAAGCGGAGACACAGCCACTGGAGTTAGGATGGCA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR TCA 90 bp GAGACTGGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCGCTGTGAGAGATTGTCCAGGATaGCCTCCCCAATCATGTCAT +
Preference number: 4 (lower is better)
Translates to: ETGTSVEITLLSPIGSAVRDCPG*PPQSCH
Trigger: ATGACATGATTGGGGAGGTCATCCTGGACAATCTCT...CACAGCGGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR TCA 90 bp GCTCACAGTCAGGAACTTTTTGCCAGGCAGCATCCATCTCCTTCCTCATTGCATCTCTACAGACTCCTATaGTCTCGTTGTGGCCAACTC +
Preference number: 4 (lower is better)
Translates to: AHSQELFARQHPSPSSLHLYRLL*SRCGQL
Trigger: GAGTTGGCCACAACGAGATCATAGGAGTCTGTAGAG...ATGCAATGAGGAAGGAGATGGATGCTGCCTGGCAAAAAGTTCCTGACTGTGAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR GCA 90 bp CTAAGGAAAGCGACTAAGTTCCCACGTGGAGTCAAAATGTTTCCAGTTGGGGAACAAAGGCCTTCAGGATaGGCACAATCAGCGTCTCGC +
Preference number: 4 (lower is better)
Translates to: LRKATKFPRGVKMFPVGEQRPSG*AQSASR
Trigger: GCGAGACGCTGATTGTGCGCATCCTGAAGGCCTTTG...TTCCCCAACTGGAAACATTTTGACTCCACGTGGGAACTTAGTCGCTTTCCTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp TGTTTAGAGACTGGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCTCTGCAGCTTGCACTTaGGGTCAGGCAGGAGGTAGA +
Preference number: 4 (lower is better)
Translates to: CLETGTSVEITLLSPIGSSAACT*GQAGGR
Trigger: TCTACCTCCTGCCTGACCGCAAGTGCAAGCTGCAGA...GGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTCTAAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp AGGCAGCATCCATCTCCTTCCTCATTGCATATACTTGTATACCATGTTATACACCCCGGGTCTGCAGCTTaGACTTGCGGTCAGGCAGGA +
Preference number: 4 (lower is better)
Translates to: RQHPSPSSLHILVYHVIHPGSAA*TCGQAG
Trigger: TCCTGCCTGACCGCAAGTGCAAGCTGCAGACCCGGG...GTGTATAACATGGTATACAAGTATATGCAATGAGGAAGGAGATGGATGCTGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR GCA 90 bp TATGTCTCCTCTGTGAGGGAAGAGTCCTGGTTAATAAATGGTGAAGCCTATTTACGGTGCACCCGGGTCTaGAGCTTGCACTTGCGGTCA +
Preference number: 4 (lower is better)
Translates to: YVSSVREESWLINGEAYLRCTRV*SLHLRS
Trigger: TGACCGCAAGTGCAAGCTGCAGACCCGGGTGCACCG...TAAATAGGCTTCACCATTTATTAACCAGGACTCTTCCCTCACAGAGGAGACATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp TATGTCTCCTCTGTGAGGGAAGAGTCCTGGTTAATAAATGGTGAAGCCTATTTATGGGGTTCAGGGTCTTaGGGTGCACCCGGGTCTGCA +
Preference number: 4 (lower is better)
Translates to: YVSSVREESWLINGEAYLWGSGS*GAPGSA
Trigger: TGCAGACCCGGGTGCACCGCAAGACCCTGAACCCCA...TAAATAGGCTTCACCATTTATTAACCAGGACTCTTCCCTCACAGAGGAGACATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp CTTCCTCATTGCATATACTTGTATACCATGTTATACACTAGAGGTTCCCCATGCTGGGGTTCAGGGTCTTaGGGTGCACCCGGGTCTGCA +
Preference number: 4 (lower is better)
Translates to: LPHCIYLYTMLYTRGSPCWGSGS*GAPGSA
Trigger: TGCAGACCCGGGTGCACCGCAAGACCCTGAACCCCA...GCATGGGGAACCTCTAGTGTATAACATGGTATACAAGTATATGCAATGAGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR GCA 90 bp GCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTGGAACAAGTGTGGAATCAAAGACACTGAGATaGAGCTTGCGGTCAGCCAGC +
Preference number: 4 (lower is better)
Translates to: AITVTARTLCLETGTSVESKTLR*SLRSAS
Trigger: GCTGGCTGACCGCAAGCTGCATCTCAGTGTCTTTGA...TTCCACACTTGTTCCAGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp GGAGGAAAGCCAAATAACGCCTATTATTTCATAGGATTCTTAGGAGATGAGCTCGAGGGTGAGCCTGCCTaGTGTGGGCAGGTAGCAGAG +
Preference number: 4 (lower is better)
Translates to: GGKPNNAYYFIGFLGDELEGEPA*CGQVAE
Trigger: CTCTGCTACCTGCCCACAGCAGGCAGGCTCACCCTC...GAGCTCATCTCCTAAGAATCCTATGAAATAATAGGCGTTATTTGGCTTTCCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CCA 90 bp ACCATGACTTATAAAATGCTCACAGTCAGGAACTTTTTGCCAGGCAGCATCCATCCTGGTGGAGGATGCTaGCTCTGTGGTCTGTCGCTG +
Preference number: 4 (lower is better)
Translates to: TMTYKMLTVRNFLPGSIHPGGGC*LCGLSL
Trigger: CAGCGACAGACCACAGAGCCAGCATCCTCCACCAGG...ATGGATGCTGCCTGGCAAAAAGTTCCTGACTGTGAGCATTTTATAAGTCATGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CCA 90 bp TCAGGAACTTTTTGCCAGGCAGCATCCATCTCCTTCCTCATTGCATATACTTGTAGGATGTGTGCCTGGTaGAGGATGCTGGCTCTGTGG +
Preference number: 4 (lower is better)
Translates to: SGTFCQAASISFLIAYTCRMCAW*RMLALW
Trigger: CCACAGAGCCAGCATCCTCCACCAGGCACACATCCT...ACAAGTATATGCAATGAGGAAGGAGATGGATGCTGCCTGGCAAAAAGTTCCTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CCA 90 bp AATAAAGGAGAGGAGAACTTGGTGGCTTTAGCAAACCTCTGTGTGCAAATGGCCATCTGTCGTGGCAGGTaGCGCTTGAAGGATGTGTGC +
Preference number: 4 (lower is better)
Translates to: NKGEENLVALANLCVQMAICRGR*RLKDVC
Trigger: GCACACATCCTTCAAGCGCCACCTGCCACGACAGAT...GGCCATTTGCACACAGAGGTTTGCTAAAGCCACCAAGTTCTCCTCTCCTTTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp ATAGTGTGTGCTGCCACACCTAACATTAGGCAGTACTGGGGACTGGACTCAGGATCACTAGTAGCGTACTaGATGTCCTTCCAGATGGAG +
Preference number: 4 (lower is better)
Translates to: IVCAATPNIRQYWGLDSGSLVAY*MSFQME
Trigger: CTCCATCTGGAAGGACATCCAGTACGCTACTAGTGA...TCCTGAGTCCAGTCCCCAGTACTGCCTAATGTTAGGTGTGGCAGCACACACTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
3UTR CAA 72 bp CTGTGTTTAGAGACTGGAACAAGTGTGGAAATAACATaGCTGAGTCCCATCGGCTCCGCTGTGCAGCTCATG +
Preference number: 4 (lower is better)
Translates to: LCLETGTSVEIT*LSPIGSAVQLM
Trigger: CATGAGCTGCACAGCGGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTCTAAACACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
ENSMUST00000136049.10
3UTR CAA 72 bp GCCTGGAAACCCCTGCTGCTCATTGTGCCCCTTCGCTaGGGCATAAACCAAATCAATCCTGTGTATGTTGAA +
Preference number: 4 (lower is better)
Translates to: AWKPLLLIVPLR*GINQINPVYVE
Trigger: TTCAACATACACAGGATTGATTTGGTTTATGCCCAAGCGAAGGGGCACAATGAGCAGCAGGGGTTTCCAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR GCA 90 bp TGTTTAGAGACTGGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCGAGAAAGAGAAAAACTaGCACCAGGGCCACGCCACA +
Preference number: 4 (lower is better)
Translates to: CLETGTSVEITLLSPIGSEKEKN*HQGHAT
Trigger: TGTGGCGTGGCCCTGGTGGCAGTTTTTCTCTTTCTC...GGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTCTAAACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090697.11
CDS-3UTR GCA 90 bp AGGCAGCATCCATCTCCTTCCTCATTGCATATACTTGTATACCATGTTATACACGTGCCTGGTGGAGGATaGTGGCTCTGTGGTCTGTCG +
Preference number: 4 (lower is better)
Translates to: RQHPSPSSLHILVYHVIHVPGGG*WLCGLS
Trigger: CGACAGACCACAGAGCCAGCATCCTCCACCAGGCAC...GTGTATAACATGGTATACAAGTATATGCAATGAGGAAGGAGATGGATGCTGCCT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR GCA 90 bp ACAAATGTGATCATTAACTGTGGAGTGTTGGGAAACATATGGCGTGGTTACTTTCCCGGGTCTGCAGCTTaGACTTGCGGTCAGGCAGGA +
Preference number: 4 (lower is better)
Translates to: TNVIINCGVLGNIWRGYFPGSAA*TCGQAG
Trigger: TCCTGCCTGACCGCAAGTGCAAGCTGCAGACCCGGG...AAAGTAACCACGCCATATGTTTCCCAACACTCCACAGTTAATGATCACATTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp GCTCTTCATAGACAGGCAGACTCAAAAATGTGGTTCGGATTTCAAAATGACCCATGTTGCCTCTGGAGCTaGGGCTCTGGAGAGTCTCTG +
Preference number: 4 (lower is better)
Translates to: ALHRQADSKMWFGFQNDPCCLWS*GSGESL
Trigger: CAGAGACTCTCCAGAGCCCCAGCTCCAGAGGCAACA...TGGGTCATTTTGAAATCCGAACCACATTTTTGAGTCTGCCTGTCTATGAAGAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp TCCATCTTTCTGGTGCATCTCCAGGGGTCAACATTTGATGGAGGCACAAAATTTATCTGTCGTGGCAGGTaGCGCTTGAAGGATGTGTGC +
Preference number: 4 (lower is better)
Translates to: SIFLVHLQGSTFDGGTKFICRGR*RLKDVC
Trigger: GCACACATCCTTCAAGCGCCACCTGCCACGACAGAT...AAATTTTGTGCCTCCATCAAATGTTGACCCCTGGAGATGCACCAGAAAGATGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp CTCCAGGGGTCAACATTTGATGGAGGCACAAAATTTCAGAGATTCAGTCTGCTTGACATGCATCTGTCGTaGCAGGTGGCGCTTGAAGGA +
Preference number: 4 (lower is better)
Translates to: LQGSTFDGGTKFQRFSLLDMHLS*QVALEG
Trigger: TCCTTCAAGCGCCACCTGCCACGACAGATGCATGTC...AAGCAGACTGAATCTCTGAAATTTTGTGCCTCCATCAAATGTTGACCCCTGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp GAAACACTTCTAAATAAAGGAGAGGAGAACTTGGTGGCTTTAGCAAACCTCTGTTGGCGGCCTCCGACTTaGCATCATCCCCATCCACTG +
Preference number: 4 (lower is better)
Translates to: ETLLNKGEENLVALANLCWRPPT*HHPHPL
Trigger: CAGTGGATGGGGATGATGCCAAGTCGGAGGCCGCCA...ACAGAGGTTTGCTAAAGCCACCAAGTTCTCCTCTCCTTTATTTAGAAGTGTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp ATGTTATACACTAGAGGTTCCCCATGCCCCCTTTCCATAAGAGGCCAAGGACTAAGTTCTCATCAAAGGTaGGGTTCAGGGTCTTGCGGT +
Preference number: 4 (lower is better)
Translates to: MLYTRGSPCPLSIRGQGLSSHQR*GSGSCG
Trigger: ACCGCAAGACCCTGAACCCCACCTTTGATGAGAACT...TAGTCCTTGGCCTCTTATGGAAAGGGGGCATGGGGAACCTCTAGTGTATAACAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CCA 90 bp GAAGATATCAAGAAAATGTGCTGTGTTCTTCCTGTGGGTGCTGCTGACCCAGCTAGTTCTCATCAAAGGTaGGGTTCAGGGTCTTGCGGT +
Preference number: 4 (lower is better)
Translates to: EDIKKMCCVLPVGAADPASSHQR*GSGSCG
Trigger: ACCGCAAGACCCTGAACCCCACCTTTGATGAGAACT...AGCTGGGTCAGCAGCACCCACAGGAAGAACACAGCACATTTTCTTGATATCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR TCA 90 bp GAAGATATCAAGAAAATGTGCTGTGTTCTTCCTGTGGGTGCTGCTGACCCAGCTATCATCCCCATCCACTaGCTTCTGCTTGTAAAGCTC +
Preference number: 4 (lower is better)
Translates to: EDIKKMCCVLPVGAADPAIIPIH*LLLVKL
Trigger: GAGCTTTACAAGCAGAAGTCAGTGGATGGGGATGAT...AGCTGGGTCAGCAGCACCCACAGGAAGAACACAGCACATTTTCTTGATATCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR TCA 90 bp TTTAGAGACTGGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCGCAGAGATTGTCCAGGATaGCCTCCCCAATCATGTCAT +
Preference number: 4 (lower is better)
Translates to: FRDWNKCGNNIAESHRLRRDCPG*PPQSCH
Trigger: ATGACATGATTGGGGAGGTCATCCTGGACAATCTCT...GCGGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTCTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR TCA 90 bp ATGTTATACACTAGAGGTTCCCCATGCCCCCTTTCCATAAGAGGCCAAGGACTAAGAGATTGTCCAGGATaGCCTCCCCAATCATGTCAT +
Preference number: 4 (lower is better)
Translates to: MLYTRGSPCPLSIRGQGLRDCPG*PPQSCH
Trigger: ATGACATGATTGGGGAGGTCATCCTGGACAATCTCT...TAGTCCTTGGCCTCTTATGGAAAGGGGGCATGGGGAACCTCTAGTGTATAACAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR GCA 90 bp GGAGGAAAGCCAAATAACGCCTATTATTTCATAGGATTCTTAGGAGATGAGCTCCGCTTGAAGGATGTGTaGCTGGTGGAGGATGCTGGC +
Preference number: 4 (lower is better)
Translates to: GGKPNNAYYFIGFLGDELRLKDV*LVEDAG
Trigger: GCCAGCATCCTCCACCAGGCACACATCCTTCAAGCG...GAGCTCATCTCCTAAGAATCCTATGAAATAATAGGCGTTATTTGGCTTTCCTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR GCA 90 bp TCCTTCCTCATTGCATATACTTGTATACCATGTTATACACTAGAGGTTCCCCATTTCAGGGTCTTGCGGTaGACCCGGGTCTGCAGCTTG +
Preference number: 4 (lower is better)
Translates to: SFLIAYTCIPCYTLEVPHFRVLR*TRVCSL
Trigger: CAAGCTGCAGACCCGGGTGCACCGCAAGACCCTGAA...ATGGGGAACCTCTAGTGTATAACATGGTATACAAGTATATGCAATGAGGAAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CCA 90 bp CATCTCCTTCCTCATTGCATATACTTGTATACCATGTTATACACTAGAGGTTCCGGAAGCCCAGGGCACTaGGGTCCTTCAGCTTATCCG +
Preference number: 4 (lower is better)
Translates to: HLLPHCIYLYTMLYTRGSGSPGH*GPSAYP
Trigger: CGGATAAGCTGAAGGACCCCAGTGCCCTGGGCTTCC...GGAACCTCTAGTGTATAACATGGTATACAAGTATATGCAATGAGGAAGGAGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CCA 90 bp GAATGGAATTCCTTGGCTGTTTATGTTTCCATGGATAACACAGTGGTCATTGAACCTGGTGGAGGATGCTaGCTCTGTGGTCTGTCGCTG +
Preference number: 4 (lower is better)
Translates to: EWNSLAVYVSMDNTVVIEPGGGC*LCGLSL
Trigger: CAGCGACAGACCACAGAGCCAGCATCCTCCACCAGG...TTCAATGACCACTGTGTTATCCATGGAAACATAAACAGCCAAGGAATTCCATTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CCA 90 bp GGAGGAAAGCCAAATAACGCCTATTATTTCATAGGATTCTTAGGAGATGAGCTCAGGATGTGTGCCTGGTaGAGGATGCTGGCTCTGTGG +
Preference number: 4 (lower is better)
Translates to: GGKPNNAYYFIGFLGDELRMCAW*RMLALW
Trigger: CCACAGAGCCAGCATCCTCCACCAGGCACACATCCT...GAGCTCATCTCCTAAGAATCCTATGAAATAATAGGCGTTATTTGGCTTTCCTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CCA 90 bp CATCTCCTTCCTCATTGCATATACTTGTATACCATGTTATACACTAGAGGTTCCTGGCGGCCTCCGACTTaGCATCATCCCCATCCACTG +
Preference number: 4 (lower is better)
Translates to: HLLPHCIYLYTMLYTRGSWRPPT*HHPHPL
Trigger: CAGTGGATGGGGATGATGCCAAGTCGGAGGCCGCCA...GGAACCTCTAGTGTATAACATGGTATACAAGTATATGCAATGAGGAAGGAGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CCA 90 bp GAATGGAATTCCTTGGCTGTTTATGTTTCCATGGATAACACAGTGGTCATTGAATGGCGGCCTCCGACTTaGCATCATCCCCATCCACTG +
Preference number: 4 (lower is better)
Translates to: EWNSLAVYVSMDNTVVIEWRPPT*HHPHPL
Trigger: CAGTGGATGGGGATGATGCCAAGTCGGAGGCCGCCA...TTCAATGACCACTGTGTTATCCATGGAAACATAAACAGCCAAGGAATTCCATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CCA 90 bp TGTTTAGAGACTGGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCAGTTCTCATCAAAGGTaGGGTTCAGGGTCTTGCGGT +
Preference number: 4 (lower is better)
Translates to: CLETGTSVEITLLSPIGSSSHQR*GSGSCG
Trigger: ACCGCAAGACCCTGAACCCCACCTTTGATGAGAACT...GGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTCTAAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp GAAGATATCAAGAAAATGTGCTGTGTTCTTCCTGTGGGTGCTGCTGACCCAGCTTCACTAGTAGCGTACTaGATGTCCTTCCAGATGGAG +
Preference number: 4 (lower is better)
Translates to: EDIKKMCCVLPVGAADPASLVAY*MSFQME
Trigger: CTCCATCTGGAAGGACATCCAGTACGCTACTAGTGA...AGCTGGGTCAGCAGCACCCACAGGAAGAACACAGCACATTTTCTTGATATCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CCA 90 bp CTAAGGAAAGCGACTAAGTTCCCACGTGGAGTCAAAATGTTTCCAGTTGGGGAAAACATCTCATTCCAGTaGTCCCTGCCAAGGCCTTCA +
Preference number: 4 (lower is better)
Translates to: LRKATKFPRGVKMFPVGENISFQ*SLPRPS
Trigger: TGAAGGCCTTGGCAGGGACCACTGGAATGAGATGTT...TTCCCCAACTGGAAACATTTTGACTCCACGTGGGAACTTAGTCGCTTTCCTTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR TCA 90 bp CTCCAGGCTGTGACAGGGGTGGGAAGACACAAAGCAGTAATTAACAACATAATTCAAAGTCAAAGACACTaGGATGCAGCTTGCGGTCAG +
Preference number: 4 (lower is better)
Translates to: LQAVTGVGRHKAVINNIIQSQRH*DAACGQ
Trigger: CTGACCGCAAGCTGCATCTCAGTGTCTTTGACTTTG...AATTATGTTGTTAATTACTGCTTTGTGTCTTCCCACCCCTGTCACAGCCTGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp ATATTTGAAGAGAAAAATCATCTTTACCCACCAGTCGCTAGCACAAGGCTCATAGCTTATCCGCCATGTTaGCTCTGGAGCTGGGGCTCT +
Preference number: 4 (lower is better)
Translates to: IFEEKNHLYPPVASTRLIAYPPC*LWSWGS
Trigger: AGAGCCCCAGCTCCAGAGGCAACATGGCGGATAAGC...TATGAGCCTTGTGCTAGCGACTGGTGGGTAAAGATGATTTTTCTCTTCAAATAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp GCTCTTCATAGACAGGCAGACTCAAAAATGTGGTTCGGATTTCAAAATGACCCAGTGTGGCGCATGATGTaGTCTTTGACCGACATCTGC +
Preference number: 4 (lower is better)
Translates to: ALHRQADSKMWFGFQNDPVWRMM*SLTDIC
Trigger: GCAGATGTCGGTCAAAGAGCACATCATGCGCCACAC...TGGGTCATTTTGAAATCCGAACCACATTTTTGAGTCTGCCTGTCTATGAAGAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp ACACAGTGGTCATTGAAGATATCAAGAAAATGTGCTGTGTTCTTCCTGTGGGTGGTGTGGCGCATGATGTaGTCTTTGACCGACATCTGC +
Preference number: 4 (lower is better)
Translates to: TQWSLKISRKCAVFFLWVVWRMM*SLTDIC
Trigger: GCAGATGTCGGTCAAAGAGCACATCATGCGCCACAC...CACCCACAGGAAGAACACAGCACATTTTCTTGATATCTTCAATGACCACTGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR GCA 90 bp CAGAACCAGGTGCTGTTTTCAGAAACATTTCCAGAAAATGTTCACTTATGGAAAGTGCCTGGTGGAGGATaGTGGCTCTGTGGTCTGTCG +
Preference number: 4 (lower is better)
Translates to: QNQVLFSETFPENVHLWKVPGGG*WLCGLS
Trigger: CGACAGACCACAGAGCCAGCATCCTCCACCAGGCAC...TTTCCATAAGTGAACATTTTCTGGAAATGTTTCTGAAAACAGCACCTGGTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp CACAATGAAGTTACTTGCTTGCTGAGACTCTTGTCACGACCTTGTGATTTTTCTCAAAGGCCTTCAGGATaGGCACAATCAGCGTCTCGC +
Preference number: 4 (lower is better)
Translates to: HNEVTCLLRLLSRPCDFSQRPSG*AQSASR
Trigger: GCGAGACGCTGATTGTGCGCATCCTGAAGGCCTTTG...AGAAAAATCACAAGGTCGTGACAAGAGTCTCAGCAAGCAAGTAACTTCATTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp AGGCAGCATCCATCTCCTTCCTCATTGCATATACTTGTATACCATGTTATACACCAAAGGCCTTCAGGATaGGCACAATCAGCGTCTCGC +
Preference number: 4 (lower is better)
Translates to: RQHPSPSSLHILVYHVIHQRPSG*AQSASR
Trigger: GCGAGACGCTGATTGTGCGCATCCTGAAGGCCTTTG...GTGTATAACATGGTATACAAGTATATGCAATGAGGAAGGAGATGGATGCTGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR GCA 90 bp TTATTTGATGAATGGAATTCCTTGGCTGTTTATGTTTCCATGGATAACACAGTGTGGGGTTCAGGGTCTTaGGGTGCACCCGGGTCTGCA +
Preference number: 4 (lower is better)
Translates to: LFDEWNSLAVYVSMDNTVWGSGS*GAPGSA
Trigger: TGCAGACCCGGGTGCACCGCAAGACCCTGAACCCCA...CACTGTGTTATCCATGGAAACATAAACAGCCAAGGAATTCCATTCATCAAATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR GCA 90 bp ACTTATAAAATGCTCACAGTCAGGAACTTTTTGCCAGGCAGCATCCATCTCCTTTCAAAGACACTGAGATaGAGCTTGCGGTCAGCCAGC +
Preference number: 4 (lower is better)
Translates to: TYKMLTVRNFLPGSIHLLSKTLR*SLRSAS
Trigger: GCTGGCTGACCGCAAGCTGCATCTCAGTGTCTTTGA...AAGGAGATGGATGCTGCCTGGCAAAAAGTTCCTGACTGTGAGCATTTTATAAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CCA 90 bp ACAAATGTGATCATTAACTGTGGAGTGTTGGGAAACATATGGCGTGGTTACTTTTGTTGCCTCTGGAGCTaGGGCTCTGGAGAGTCTCTG +
Preference number: 4 (lower is better)
Translates to: TNVIINCGVLGNIWRGYFCCLWS*GSGESL
Trigger: CAGAGACTCTCCAGAGCCCCAGCTCCAGAGGCAACA...AAAGTAACCACGCCATATGTTTCCCAACACTCCACAGTTAATGATCACATTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp CATCTCCTTCCTCATTGCATATACTTGTATACCATGTTATACACTAGAGGTTCCTGTTGCCTCTGGAGCTaGGGCTCTGGAGAGTCTCTG +
Preference number: 4 (lower is better)
Translates to: HLLPHCIYLYTMLYTRGSCCLWS*GSGESL
Trigger: CAGAGACTCTCCAGAGCCCCAGCTCCAGAGGCAACA...GGAACCTCTAGTGTATAACATGGTATACAAGTATATGCAATGAGGAAGGAGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CCA 90 bp GAATGGAATTCCTTGGCTGTTTATGTTTCCATGGATAACACAGTGGTCATTGAATGTTGCCTCTGGAGCTaGGGCTCTGGAGAGTCTCTG +
Preference number: 4 (lower is better)
Translates to: EWNSLAVYVSMDNTVVIECCLWS*GSGESL
Trigger: CAGAGACTCTCCAGAGCCCCAGCTCCAGAGGCAACA...TTCAATGACCACTGTGTTATCCATGGAAACATAAACAGCCAAGGAATTCCATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CCA 90 bp CTTCCTCATTGCATATACTTGTATACCATGTTATACACTAGAGGTTCCCCATGCAGGATGCTGGCTCTGTaGTCTGTCGCTGCAGCTTTG +
Preference number: 4 (lower is better)
Translates to: LPHCIYLYTMLYTRGSPCRMLAL*SVAAAL
Trigger: CAAAGCTGCAGCGACAGACCACAGAGCCAGCATCCT...GCATGGGGAACCTCTAGTGTATAACATGGTATACAAGTATATGCAATGAGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CCA 90 bp ATATTTGAAGAGAAAAATCATCTTTACCCACCAGTCGCTAGCACAAGGCTCATAAGGATGTGTGCCTGGTaGAGGATGCTGGCTCTGTGG +
Preference number: 4 (lower is better)
Translates to: IFEEKNHLYPPVASTRLIRMCAW*RMLALW
Trigger: CCACAGAGCCAGCATCCTCCACCAGGCACACATCCT...TATGAGCCTTGTGCTAGCGACTGGTGGGTAAAGATGATTTTTCTCTTCAAATAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp GAAACACTTCTAAATAAAGGAGAGGAGAACTTGGTGGCTTTAGCAAACCTCTGTGACATGCATCTGTCGTaGCAGGTGGCGCTTGAAGGA +
Preference number: 4 (lower is better)
Translates to: ETLLNKGEENLVALANLCDMHLS*QVALEG
Trigger: TCCTTCAAGCGCCACCTGCCACGACAGATGCATGTC...ACAGAGGTTTGCTAAAGCCACCAAGTTCTCCTCTCCTTTATTTAGAAGTGTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp GCTCTTCATAGACAGGCAGACTCAAAAATGTGGTTCGGATTTCAAAATGACCCATGCCATAGTCCACGCTaGAGACATGCATCTGTCGTG +
Preference number: 4 (lower is better)
Translates to: ALHRQADSKMWFGFQNDPCHSPR*RHASVV
Trigger: CACGACAGATGCATGTCTCCAGCGTGGACTATGGCA...TGGGTCATTTTGAAATCCGAACCACATTTTTGAGTCTGCCTGTCTATGAAGAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp ATGACTTATAAAATGCTCACAGTCAGGAACTTTTTGCCAGGCAGCATCCATCTCTGCCATAGTCCACGCTaGAGACATGCATCTGTCGTG +
Preference number: 4 (lower is better)
Translates to: MTYKMLTVRNFLPGSIHLCHSPR*RHASVV
Trigger: CACGACAGATGCATGTCTCCAGCGTGGACTATGGCA...GAGATGGATGCTGCCTGGCAAAAAGTTCCTGACTGTGAGCATTTTATAAGTCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CCA 90 bp CAGAACCAGGTGCTGTTTTCAGAAACATTTCCAGAAAATGTTCACTTATGGAAATGGCGGCCTCCGACTTaGCATCATCCCCATCCACTG +
Preference number: 4 (lower is better)
Translates to: QNQVLFSETFPENVHLWKWRPPT*HHPHPL
Trigger: CAGTGGATGGGGATGATGCCAAGTCGGAGGCCGCCA...TTTCCATAAGTGAACATTTTCTGGAAATGTTTCTGAAAACAGCACCTGGTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp TCCATCTTTCTGGTGCATCTCCAGGGGTCAACATTTGATGGAGGCACAAAATTTAGTTCTCATCAAAGGTaGGGTTCAGGGTCTTGCGGT +
Preference number: 4 (lower is better)
Translates to: SIFLVHLQGSTFDGGTKFSSHQR*GSGSCG
Trigger: ACCGCAAGACCCTGAACCCCACCTTTGATGAGAACT...AAATTTTGTGCCTCCATCAAATGTTGACCCCTGGAGATGCACCAGAAAGATGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp ATCTCCTTCCTCATTGCATATACTTGTATACCATGTTATACACTAGAGGTTCCCGGATGTCCTTCCAGATaGAGGTCTCCCGGGACAGGT +
Preference number: 4 (lower is better)
Translates to: ISFLIAYTCIPCYTLEVPGCPSR*RSPGTG
Trigger: ACCTGTCCCGGGAGACCTCCATCTGGAAGGACATCC...GGGAACCTCTAGTGTATAACATGGTATACAAGTATATGCAATGAGGAAGGAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CCA 90 bp GAATGGAATTCCTTGGCTGTTTATGTTTCCATGGATAACACAGTGGTCATTGAAGGATGTCCTTCCAGATaGAGGTCTCCCGGGACAGGT +
Preference number: 4 (lower is better)
Translates to: EWNSLAVYVSMDNTVVIEGCPSR*RSPGTG
Trigger: ACCTGTCCCGGGAGACCTCCATCTGGAAGGACATCC...TTCAATGACCACTGTGTTATCCATGGAAACATAAACAGCCAAGGAATTCCATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
3UTR CAA 72 bp GCTCCATCTTTCTGGTGCATCTCCAGGGGTCAACATTaGATGGAGGCACAAAATTTCAGAGATTCAGTCTGC +
Preference number: 4 (lower is better)
Translates to: APSFWCISRGQH*MEAQNFRDSVC
Trigger: GCAGACTGAATCTCTGAAATTTTGTGCCTCCATCAAATGTTGACCCCTGGAGATGCACCAGAAAGATGGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
CDS-3UTR TCA 90 bp TCCATCTTTCTGGTGCATCTCCAGGGGTCAACATTTGATGGAGGCACAAAATTTATCATCCCCATCCACTaGCTTCTGCTTGTAAAGCTC +
Preference number: 4 (lower is better)
Translates to: SIFLVHLQGSTFDGGTKFIIPIH*LLLVKL
Trigger: GAGCTTTACAAGCAGAAGTCAGTGGATGGGGATGAT...AAATTTTGTGCCTCCATCAAATGTTGACCCCTGGAGATGCACCAGAAAGATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR TCA 90 bp GCTCTTCATAGACAGGCAGACTCAAAAATGTGGTTCGGATTTCAAAATGACCCACAAAGTCAAAGACACTaGGATGCAGCTTGCGGTCAG +
Preference number: 4 (lower is better)
Translates to: ALHRQADSKMWFGFQNDPQSQRH*DAACGQ
Trigger: CTGACCGCAAGCTGCATCTCAGTGTCTTTGACTTTG...TGGGTCATTTTGAAATCCGAACCACATTTTTGAGTCTGCCTGTCTATGAAGAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR TCA 90 bp ACACAGTGGTCATTGAAGATATCAAGAAAATGTGCTGTGTTCTTCCTGTGGGTGCAAAGTCAAAGACACTaGGATGCAGCTTGCGGTCAG +
Preference number: 4 (lower is better)
Translates to: TQWSLKISRKCAVFFLWVQSQRH*DAACGQ
Trigger: CTGACCGCAAGCTGCATCTCAGTGTCTTTGACTTTG...CACCCACAGGAAGAACACAGCACATTTTCTTGATATCTTCAATGACCACTGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR GCA 90 bp CTCACAGTCAGGAACTTTTTGCCAGGCAGCATCCATCTCCTTCCTCATTGCATAGCCTGTGATGTCCATTaGTTTGAGATTTCGACACTT +
Preference number: 4 (lower is better)
Translates to: LTVRNFLPGSIHLLPHCIACDVH*FEISTL
Trigger: AAGTGTCGAAATCTCAAAGCAATGGACATCACAGGC...TATGCAATGAGGAAGGAGATGGATGCTGCCTGGCAAAAAGTTCCTGACTGTGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR GCA 90 bp AAGAAAATGTGCTGTGTTCTTCCTGTGGGTGCTGCTGACCCAGCTGGTGATTTTGCCTGTGATGTCCATTaGTTTGAGATTTCGACACTT +
Preference number: 4 (lower is better)
Translates to: KKMCCVLPVGAADPAGDFACDVH*FEISTL
Trigger: AAGTGTCGAAATCTCAAAGCAATGGACATCACAGGC...AAAATCACCAGCTGGGTCAGCAGCACCCACAGGAAGAACACAGCACATTTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CCA 90 bp TATGTCTCCTCTGTGAGGGAAGAGTCCTGGTTAATAAATGGTGAAGCCTATTTACGCTGCAGCTTTGTGTaGCGCATGATGTGCTCTTTG +
Preference number: 4 (lower is better)
Translates to: YVSSVREESWLINGEAYLRCSFV*RMMCSL
Trigger: CAAAGAGCACATCATGCGCCACACAAAGCTGCAGCG...TAAATAGGCTTCACCATTTATTAACCAGGACTCTTCCCTCACAGAGGAGACATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp TCCTTCCTCATTGCATATACTTGTATACCATGTTATACACTAGAGGTTCCCCATATCTGTCGTGGCAGGTaGCGCTTGAAGGATGTGTGC +
Preference number: 4 (lower is better)
Translates to: SFLIAYTCIPCYTLEVPHICRGR*RLKDVC
Trigger: GCACACATCCTTCAAGCGCCACCTGCCACGACAGAT...ATGGGGAACCTCTAGTGTATAACATGGTATACAAGTATATGCAATGAGGAAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
3UTR CAA 72 bp CCTCATGATTTCAACACGGGACAAGAAGACCACATCTaGTCTTGTGTCACAGCAGTGAAGAGCTTCCATGAA +
Preference number: 4 (lower is better)
Translates to: PHDFNTGQEDHI*SCVTAVKSFHE
Trigger: TTCATGGAAGCTCTTCACTGCTGTGACACAAGACAAGATGTGGTCTTCTTGTCCCGTGTTGAAATCATGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR CAA 72 bp CCAGGCAGCATCCATCTCCTTCCTCATTGCATATACTaGTATACCATGTTATACACTAGAGGTTCCCCATGC +
Preference number: 4 (lower is better)
Translates to: PGSIHLLPHCIY*YTMLYTRGSPC
Trigger: GCATGGGGAACCTCTAGTGTATAACATGGTATACAAGTATATGCAATGAGGAAGGAGATGGATGCTGCCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR TCA 90 bp CTTCCTCATTGCATATACTTGTATACCATGTTATACACTAGAGGTTCCCCATGCCAAAGTCAAAGACACTaGGATGCAGCTTGCGGTCAG +
Preference number: 4 (lower is better)
Translates to: LPHCIYLYTMLYTRGSPCQSQRH*DAACGQ
Trigger: CTGACCGCAAGCTGCATCTCAGTGTCTTTGACTTTG...GCATGGGGAACCTCTAGTGTATAACATGGTATACAAGTATATGCAATGAGGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR TCA 90 bp TCCTTCCTCATTGCATATACTTGTATACCATGTTATACACTAGAGGTTCCCCATCAAGGCCTTCAGCATTaGTCCCCACTCTACAGACTC +
Preference number: 4 (lower is better)
Translates to: SFLIAYTCIPCYTLEVPHQGLQH*SPLYRL
Trigger: GAGTCTGTAGAGTGGGGATCAATGCTGAAGGCCTTG...ATGGGGAACCTCTAGTGTATAACATGGTATACAAGTATATGCAATGAGGAAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR GCA 90 bp GAATGGAATTCCTTGGCTGTTTATGTTTCCATGGATAACACAGTGGTCATTGAATCTTTGACCGACATCTaGACCTCGGCTGGGATGTCT +
Preference number: 4 (lower is better)
Translates to: EWNSLAVYVSMDNTVVIESLTDI*TSAGMS
Trigger: AGACATCCCAGCCGAGGTGCAGATGTCGGTCAAAGA...TTCAATGACCACTGTGTTATCCATGGAAACATAAACAGCCAAGGAATTCCATTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CCA 90 bp ATCTCCTTCCTCATTGCATATACTTGTATACCATGTTATACACTAGAGGTTCCCCGCTGCAGCTTTGTGTaGCGCATGATGTGCTCTTTG +
Preference number: 4 (lower is better)
Translates to: ISFLIAYTCIPCYTLEVPRCSFV*RMMCSL
Trigger: CAAAGAGCACATCATGCGCCACACAAAGCTGCAGCG...GGGAACCTCTAGTGTATAACATGGTATACAAGTATATGCAATGAGGAAGGAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CCA 90 bp TTGTGTTTTTATTTCTTTCTCGACAGCAGACCCAAACAAAGTGAAAAACCACAAGGATGTCCTTCCAGATaGAGGTCTCCCGGGACAGGT +
Preference number: 4 (lower is better)
Translates to: LCFYFFLDSRPKQSEKPQGCPSR*RSPGTG
Trigger: ACCTGTCCCGGGAGACCTCCATCTGGAAGGACATCC...TTGTGGTTTTTCACTTTGTTTGGGTCTGCTGTCGAGAAAGAAATAAAAACACAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR TCA 90 bp ATCTCCTTCCTCATTGCATATACTTGTATACCATGTTATACACTAGAGGTTCCCTGTAAAGCTCAGGCTTaGTACGGCCAATACTGGTGG +
Preference number: 4 (lower is better)
Translates to: ISFLIAYTCIPCYTLEVPCKAQA*YGQYWW
Trigger: CCACCAGTATTGGCCGTATCAAGCCTGAGCTTTACA...GGGAACCTCTAGTGTATAACATGGTATACAAGTATATGCAATGAGGAAGGAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR TCA 90 bp CTTCCTCATTGCATATACTTGTATACCATGTTATACACTAGAGGTTCCCCATGCATCATCCCCATCCACTaGCTTCTGCTTGTAAAGCTC +
Preference number: 4 (lower is better)
Translates to: LPHCIYLYTMLYTRGSPCIIPIH*LLLVKL
Trigger: GAGCTTTACAAGCAGAAGTCAGTGGATGGGGATGAT...GCATGGGGAACCTCTAGTGTATAACATGGTATACAAGTATATGCAATGAGGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR GCA 90 bp CAGAACCAGGTGCTGTTTTCAGAAACATTTCCAGAAAATGTTCACTTATGGAAATCTTTGACCGACATCTaGACCTCGGCTGGGATGTCT +
Preference number: 4 (lower is better)
Translates to: QNQVLFSETFPENVHLWKSLTDI*TSAGMS
Trigger: AGACATCCCAGCCGAGGTGCAGATGTCGGTCAAAGA...TTTCCATAAGTGAACATTTTCTGGAAATGTTTCTGAAAACAGCACCTGGTTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR GCA 90 bp GCTGTTTATGTTTCCATGGATAACACAGTGGTCATTGAAGATATCAAGAAAATGTCTGCAGCTTGCACTTaGGGTCAGGCAGGAGGTAGA +
Preference number: 4 (lower is better)
Translates to: AVYVSMDNTVVIEDIKKMSAACT*GQAGGR
Trigger: TCTACCTCCTGCCTGACCGCAAGTGCAAGCTGCAGA...CATTTTCTTGATATCTTCAATGACCACTGTGTTATCCATGGAAACATAAACAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR GCA 90 bp TTACTAGAAAAGTGGATCGCTTCTCTTGCCACAATATCCTGTTGGCTCATGTCCGCCTGTGATGTCCATTaGTTTGAGATTTCGACACTT +
Preference number: 4 (lower is better)
Translates to: LLEKWIASLATISCWLMSACDVH*FEISTL
Trigger: AAGTGTCGAAATCTCAAAGCAATGGACATCACAGGC...GGACATGAGCCAACAGGATATTGTGGCAAGAGAAGCGATCCACTTTTCTAGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CCA 90 bp TCCTTCCTCATTGCATATACTTGTATACCATGTTATACACTAGAGGTTCCCCATAACATCTCATTCCAGTaGTCCCTGCCAAGGCCTTCA +
Preference number: 4 (lower is better)
Translates to: SFLIAYTCIPCYTLEVPHNISFQ*SLPRPS
Trigger: TGAAGGCCTTGGCAGGGACCACTGGAATGAGATGTT...ATGGGGAACCTCTAGTGTATAACATGGTATACAAGTATATGCAATGAGGAAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
3UTR CAA 72 bp ACCATGACTTATAAAATGCTCACAGTCAGGAACTTTTaGCCAGGCAGCATCCATCTCCTTCCTCATTGCATA +
Preference number: 4 (lower is better)
Translates to: TMTYKMLTVRNF*PGSIHLLPHCI
Trigger: TATGCAATGAGGAAGGAGATGGATGCTGCCTGGCAAAAAGTTCCTGACTGTGAGCATTTTATAAGTCATGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR TCA 90 bp ATCTCCTTCCTCATTGCATATACTTGTATACCATGTTATACACTAGAGGTTCCCCCTCACCCACCTCTTTaGAGGATTTCTTTACCTCCA +
Preference number: 4 (lower is better)
Translates to: ISFLIAYTCIPCYTLEVPPHPPL*RISLPP
Trigger: TGGAGGTAAAGAAATCCTTCAAAGAGGTGGGTGAGG...GGGAACCTCTAGTGTATAACATGGTATACAAGTATATGCAATGAGGAAGGAGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR GCA 90 bp CTCACTTTATTTGATGAATGGAATTCCTTGGCTGTTTATGTTTCCATGGATAACTCAAAGACACTGAGATaGAGCTTGCGGTCAGCCAGC +
Preference number: 4 (lower is better)
Translates to: LTLFDEWNSLAVYVSMDNSKTLR*SLRSAS
Trigger: GCTGGCTGACCGCAAGCTGCATCTCAGTGTCTTTGA...GTTATCCATGGAAACATAAACAGCCAAGGAATTCCATTCATCAAATAAAGTGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CCA 90 bp CTCACTTTATTTGATGAATGGAATTCCTTGGCTGTTTATGTTTCCATGGATAACCGCTGCAGCTTTGTGTaGCGCATGATGTGCTCTTTG +
Preference number: 4 (lower is better)
Translates to: LTLFDEWNSLAVYVSMDNRCSFV*RMMCSL
Trigger: CAAAGAGCACATCATGCGCCACACAAAGCTGCAGCG...GTTATCCATGGAAACATAAACAGCCAAGGAATTCCATTCATCAAATAAAGTGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CCA 90 bp GGAGGAAAGCCAAATAACGCCTATTATTTCATAGGATTCTTAGGAGATGAGCTCACTTGGATCCTTCTGTaGCCTTGGGATTTTTCTGAG +
Preference number: 4 (lower is better)
Translates to: GGKPNNAYYFIGFLGDELTWILL*PWDFSE
Trigger: CTCAGAAAAATCCCAAGGCCACAGAAGGATCCAAGT...GAGCTCATCTCCTAAGAATCCTATGAAATAATAGGCGTTATTTGGCTTTCCTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
3UTR CAA 72 bp CGTTGTCAAACAAATGTGATCATTAACTGTGGAGTGTaGGGAAACATATGGCGTGGTTACTTTCAGCAGGAT +
Preference number: 4 (lower is better)
Translates to: RCQTNVIINCGV*GNIWRGYFQQD
Trigger: ATCCTGCTGAAAGTAACCACGCCATATGTTTCCCAACACTCCACAGTTAATGATCACATTTGTTTGACAACG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
CDS-3UTR TCA 90 bp GCTGTTTATGTTTCCATGGATAACACAGTGGTCATTGAAGATATCAAGAAAATGAGAGATTGTCCAGGATaGCCTCCCCAATCATGTCAT +
Preference number: 4 (lower is better)
Translates to: AVYVSMDNTVVIEDIKKMRDCPG*PPQSCH
Trigger: ATGACATGATTGGGGAGGTCATCCTGGACAATCTCT...CATTTTCTTGATATCTTCAATGACCACTGTGTTATCCATGGAAACATAAACAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
3UTR CAA 72 bp AAGAAACACAATGAAGTTACTTGCTTGCTGAGACTCTaGTCACGACCTTGTGATTTTTCTCTCTCTCAAGTG +
Preference number: 4 (lower is better)
Translates to: KKHNEVTCLLRL*SRPCDFSLSQV
Trigger: CACTTGAGAGAGAGAAAAATCACAAGGTCGTGACAAGAGTCTCAGCAAGCAAGTAACTTCATTGTGTTTCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR CAA 72 bp CCATCTAGAGTCAAGAAACACAATGAAGTTACTTGCTaGCTGAGACTCTTGTCACGACCTTGTGATTTTTCT +
Preference number: 4 (lower is better)
Translates to: PSRVKKHNEVTC*LRLLSRPCDFS
Trigger: AGAAAAATCACAAGGTCGTGACAAGAGTCTCAGCAAGCAAGTAACTTCATTGTGTTTCTTGACTCTAGATGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
3UTR CAA 72 bp TGGCTGTTTATGTTTCCATGGATAACACAGTGGTCATaGAAGATATCAAGAAAATGTGCTGTGTTCTTCCTG +
Preference number: 4 (lower is better)
Translates to: WLFMFPWITQWS*KISRKCAVFFL
Trigger: CAGGAAGAACACAGCACATTTTCTTGATATCTTCAATGACCACTGTGTTATCCATGGAAACATAAACAGCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
3UTR CAA 72 bp TATGCAGATAGCTTTTGTGTTCTTGACCTTCTGTTGTaGAAAGAAGGAATTTTCCAAGCTGACTTGCTTCAT +
Preference number: 4 (lower is better)
Translates to: YADSFCVLDLLL*KEGIFQADLLH
Trigger: ATGAAGCAAGTCAGCTTGGAAAATTCCTTCTTTCAACAACAGAAGGTCAAGAACACAAAAGCTATCTGCATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000132325.10
CDS GCA 90 bp ACAGAGGTGCCTGAGTCTGCCGCGCTTGGACTCTGCTCCGGGGACTaGAGCTCGAAGCTCCGACAAGTCTCAACGTCCAGCCCGAGAGGG +
Preference number: 5 (lower is better)
Translates to: TEVPESAALGLCSGD*SSKLRQVSTSSPRG
Trigger: CCCTCTCGGGCTGGACGTTGAGACTTGTCGGAGCTTCGAGCTGCAGTCCCCGGAGCAGAGTCCAAGCGCGGCAGACTCAGGCACCTCTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000121834.8
ENSMUST00000239027.2
CDS GCA 90 bp TCCAGCACAGCTGAGTCTGCCGCGCTTGGACTCTGCTCCGGGGACTaGAGCTCGAAGCTCCGACAAGTCTCAACGTCCAGCCCGAGAGGG +
Preference number: 5 (lower is better)
Translates to: SSTAESAALGLCSGD*SSKLRQVSTSSPRG
Trigger: CCCTCTCGGGCTGGACGTTGAGACTTGTCGGAGCTTCGAGCTGCAGTCCCCGGAGCAGAGTCCAAGCGCGGCAGACTCAGCTGTGCTGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
CDS GCA 90 bp CTCCCAGTACCTGAGTCTGCCGCGCTTGGACTCTGCTCCGGGGACTaGAGCTCGAAGCTCCGACAAGTCTCAACGTCCAGCCCGAGAGGG +
Preference number: 5 (lower is better)
Translates to: LPVPESAALGLCSGD*SSKLRQVSTSSPRG
Trigger: CCCTCTCGGGCTGGACGTTGAGACTTGTCGGAGCTTCGAGCTGCAGTCCCCGGAGCAGAGTCCAAGCGCGGCAGACTCAGGTACTGGGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151985.2
CDS GCA 90 bp TCCTCCAGGGCATCCAGCACAGCTGAGTCTGCCGCGCTTGGACTCTaGTCCGGGGACTGCAGCTCGAAGCTCCGACAAGTCTCAACGTCC +
Preference number: 5 (lower is better)
Translates to: SSRASSTAESAALGL*SGDCSSKLRQVSTS
Trigger: GGACGTTGAGACTTGTCGGAGCTTCGAGCTGCAGTCCCCGGAGCAGAGTCCAAGCGCGGCAGACTCAGCTGTGCTGGATGCCCTGGAGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
CDS GCA 90 bp AGGGACCTGGGTCTCCCAGTACCTGAGTCTGCCGCGCTTGGACTCTaGTCCGGGGACTGCAGCTCGAAGCTCCGACAAGTCTCAACGTCC +
Preference number: 5 (lower is better)
Translates to: RDLGLPVPESAALGL*SGDCSSKLRQVSTS
Trigger: GGACGTTGAGACTTGTCGGAGCTTCGAGCTGCAGTCCCCGGAGCAGAGTCCAAGCGCGGCAGACTCAGGTACTGGGAGACCCAGGTCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151985.2
CDS-3UTR CAA 90 bp CTCATGGCGTCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCACACTGAGATGCAGCTaGCGGTCAGCCAGCTCCTCG +
Preference number: 5 (lower is better)
Translates to: LMASEVVSETGMSSHCRSTLRCS*RSASSS
Trigger: CGAGGAGCTGGCTGACCGCAAGCTGCATCTCAGTGT...GCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGACGCCATGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp GCTGGTGGTGCTAAAGCAGTTGACTTGGGTGGTGAGAGGGGTGTGGCCAGAACCTTGGCGGCCTCCGACTaGGCATCATCCCCATCCACT +
Preference number: 5 (lower is better)
Translates to: AGGAKAVDLGGERGVARTLAASD*ASSPST
Trigger: AGTGGATGGGGATGATGCCAAGTCGGAGGCCGCCAA...GGTTCTGGCCACACCCCTCTCACCACCCAAGTCAACTGCTTTAGCACCACCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp GCTGGTGGTGCTAAAGCAGTTGACTTGGGTGGTGAGAGGGGTGTGGCCAGAACCCTTCCGCAAAAGTCCTaGGCAGGGAGGTCAAAGGCC +
Preference number: 5 (lower is better)
Translates to: AGGAKAVDLGGERGVARTLPQKS*AGRSKA
Trigger: GGCCTTTGACCTCCCTGCCAAGGACTTTTGCGGAAG...GGTTCTGGCCACACCCCTCTCACCACCCAAGTCAACTGCTTTAGCACCACCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp CTTCCTGTGGGTGCTGCTGACCCAGCTGGTGATTTTCTGACTGTATCCAATCAGGTGGGGTTCAGGGTCTaGCGGTGCACCCGGGTCTGC +
Preference number: 5 (lower is better)
Translates to: LPVGAADPAGDFLTVSNQVGFRV*RCTRVC
Trigger: GCAGACCCGGGTGCACCGCAAGACCCTGAACCCCAC...CTGATTGGATACAGTCAGAAAATCACCAGCTGGGTCAGCAGCACCCACAGGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CAA 90 bp GAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTGGCAGCTCGGCCCAAGGCCTTCAGCATaGATCCCCACTCTACAGACT +
Preference number: 5 (lower is better)
Translates to: EVVSETGMSSHCRSWQLGPRPSA*IPTLQT
Trigger: AGTCTGTAGAGTGGGGATCAATGCTGAAGGCCTTGG...GCCGAGCTGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp AGAAAATGTGCTGTGTTCTTCCTGTGGGTGCTGCTGACCCAGCTGGTGATTTTCACCCGGGTCTGCAGCTaGCACTTGCGGTCAGGCAGG +
Preference number: 5 (lower is better)
Translates to: RKCAVFFLWVLLTQLVIFTRVCS*HLRSGR
Trigger: CCTGCCTGACCGCAAGTGCAAGCTGCAGACCCGGGT...GAAAATCACCAGCTGGGTCAGCAGCACCCACAGGAAGAACACAGCACATTTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CAA 90 bp TTTAGAGACTGGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCGCGTGGGGTTCAGGGTCTaGCGGTGCACCCGGGTCTGC +
Preference number: 5 (lower is better)
Translates to: FRDWNKCGNNIAESHRLRVGFRV*RCTRVC
Trigger: GCAGACCCGGGTGCACCGCAAGACCCTGAACCCCAC...GCGGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTCTAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp CCCAAAGACTGCTATCTTACATTGTATTTCCCAGAACCAGCTTCTGGGCTCTCCACCCGGGTCTGCAGCTaGCACTTGCGGTCAGGCAGG +
Preference number: 5 (lower is better)
Translates to: PKDCYLTLYFPEPASGLSTRVCS*HLRSGR
Trigger: CCTGCCTGACCGCAAGTGCAAGCTGCAGACCCGGGT...GGAGAGCCCAGAAGCTGGTTCTGGGAAATACAATGTAAGATAGCAGTCTTTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp GTGGCTGCTGCTGCGGCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTGATGAGCAGGCTCACTaGGTCCATGTTTTCTGGGGG +
Preference number: 5 (lower is better)
Translates to: VAAAAAITVTARTLCLETDEQAH*VHVFWG
Trigger: CCCCCAGAAAACATGGACCAAGTGAGCCTGCTCATC...AGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGCCGCAGCAGCAGCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp GCTCACAGTCAGGAACTTTTTGCCAGGCAGCATCCATCTCCTTCCTCATTGCATATCTTCCCACAGCTCTaGGCGGCCTCCGACTTGGCA +
Preference number: 5 (lower is better)
Translates to: AHSQELFARQHPSPSSLHIFPQL*AASDLA
Trigger: TGCCAAGTCGGAGGCCGCCAAGAGCTGTGGGAAGAT...ATGCAATGAGGAAGGAGATGGATGCTGCCTGGCAAAAAGTTCCTGACTGTGAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CAA 90 bp TCCATCTTTCTGGTGCATCTCCAGGGGTCAACATTTGATGGAGGCACAAAATTTGTGGGGTTCAGGGTCTaGCGGTGCACCCGGGTCTGC +
Preference number: 5 (lower is better)
Translates to: SIFLVHLQGSTFDGGTKFVGFRV*RCTRVC
Trigger: GCAGACCCGGGTGCACCGCAAGACCCTGAACCCCAC...AAATTTTGTGCCTCCATCAAATGTTGACCCCTGGAGATGCACCAGAAAGATGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp GTGGCTGCTGCTGCGGCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTCGAGGGGTCCCCTCTTaGAAGGATTTCTTTACCTCC +
Preference number: 5 (lower is better)
Translates to: VAAAAAITVTARTLCLETRGVPS*KDFFTS
Trigger: GGAGGTAAAGAAATCCTTCAAAGAGGGGACCCCTCG...AGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGCCGCAGCAGCAGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp AATGCTCACAGTCAGGAACTTTTTGCCAGGCAGCATCCATCTCCTTCCTCATTGAGCTTATCCGCCATGTaGCCTCTGGAGCTGGGGCTC +
Preference number: 5 (lower is better)
Translates to: NAHSQELFARQHPSPSSLSLSAM*PLELGL
Trigger: GAGCCCCAGCTCCAGAGGCAACATGGCGGATAAGCT...CAATGAGGAAGGAGATGGATGCTGCCTGGCAAAAAGTTCCTGACTGTGAGCATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CAA 90 bp GCTCACAGTCAGGAACTTTTTGCCAGGCAGCATCCATCTCCTTCCTCATTGCATCTTCCGCAAAAGTCCTaGGCAGGGAGGTCAAAGGCC +
Preference number: 5 (lower is better)
Translates to: AHSQELFARQHPSPSSLHLPQKS*AGRSKA
Trigger: GGCCTTTGACCTCCCTGCCAAGGACTTTTGCGGAAG...ATGCAATGAGGAAGGAGATGGATGCTGCCTGGCAAAAAGTTCCTGACTGTGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CAA 90 bp CTCCAGGCTGTGACAGGGGTGGGAAGACACAAAGCAGTAATTAACAACATAATTACCCGGGTCTGCAGCTaGCACTTGCGGTCAGGCAGG +
Preference number: 5 (lower is better)
Translates to: LQAVTGVGRHKAVINNIITRVCS*HLRSGR
Trigger: CCTGCCTGACCGCAAGTGCAAGCTGCAGACCCGGGT...AATTATGTTGTTAATTACTGCTTTGTGTCTTCCCACCCCTGTCACAGCCTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp TCAGGAACTTTTTGCCAGGCAGCATCCATCTCCTTCCTCATTGCATATACTTGTACCCGGGTCTGCAGCTaGCACTTGCGGTCAGGCAGG +
Preference number: 5 (lower is better)
Translates to: SGTFCQAASISFLIAYTCTRVCS*HLRSGR
Trigger: CCTGCCTGACCGCAAGTGCAAGCTGCAGACCCGGGT...ACAAGTATATGCAATGAGGAAGGAGATGGATGCTGCCTGGCAAAAAGTTCCTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CAA 90 bp TCGGAGGTGGTTTCGGAGACGGGCATGAGCTCTCACTGTCGAAGCTGGCAGCTCGTGATGTCCATTGCTTaGAGATTTCGACACTTGATC +
Preference number: 5 (lower is better)
Translates to: SEVVSETGMSSHCRSWQLVMSIA*RFRHLI
Trigger: GATCAAGTGTCGAAATCTCAAAGCAATGGACATCAC...GAGCTGCCAGCTTCGACAGTGAGAGCTCATGCCCGTCTCCGAAACCACCTCCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp GCCATCACTGTGACTGCACGAACACTGTGTTTAGAGACTGGAACAAGTGTGGAACTTCCGCAAAAGTCCTaGGCAGGGAGGTCAAAGGCC +
Preference number: 5 (lower is better)
Translates to: AITVTARTLCLETGTSVELPQKS*AGRSKA
Trigger: GGCCTTTGACCTCCCTGCCAAGGACTTTTGCGGAAG...TTCCACACTTGTTCCAGTCTCTAAACACAGTGTTCGTGCAGTCACAGTGATGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp AGAAAATGTGCTGTGTTCTTCCTGTGGGTGCTGCTGACCCAGCTGGTGATTTTCCGACCAGACTTTTCATaGCCTGCAGTCTCCACAGCG +
Preference number: 5 (lower is better)
Translates to: RKCAVFFLWVLLTQLVIFRPDFS*PAVSTA
Trigger: CGCTGTGGAGACTGCAGGCAATGAAAAGTCTGGTCG...GAAAATCACCAGCTGGGTCAGCAGCACCCACAGGAAGAACACAGCACATTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CAA 90 bp CTCCAGGGGTCAACATTTGATGGAGGCACAAAATTTCAGAGATTCAGTCTGCTTAGCTTATCCGCCATGTaGCCTCTGGAGCTGGGGCTC +
Preference number: 5 (lower is better)
Translates to: LQGSTFDGGTKFQRFSLLSLSAM*PLELGL
Trigger: GAGCCCCAGCTCCAGAGGCAACATGGCGGATAAGCT...AAGCAGACTGAATCTCTGAAATTTTGTGCCTCCATCAAATGTTGACCCCTGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp CTCCAGGGGTCAACATTTGATGGAGGCACAAAATTTCAGAGATTCAGTCTGCTTTTGGCGGCCTCCGACTaGGCATCATCCCCATCCACT +
Preference number: 5 (lower is better)
Translates to: LQGSTFDGGTKFQRFSLLLAASD*ASSPST
Trigger: AGTGGATGGGGATGATGCCAAGTCGGAGGCCGCCAA...AAGCAGACTGAATCTCTGAAATTTTGTGCCTCCATCAAATGTTGACCCCTGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp TCCTTCCTCATTGCATATACTTGTATACCATGTTATACACTAGAGGTTCCCCATGTGGGGTTCAGGGTCTaGCGGTGCACCCGGGTCTGC +
Preference number: 5 (lower is better)
Translates to: SFLIAYTCIPCYTLEVPHVGFRV*RCTRVC
Trigger: GCAGACCCGGGTGCACCGCAAGACCCTGAACCCCAC...ATGGGGAACCTCTAGTGTATAACATGGTATACAAGTATATGCAATGAGGAAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CAA 90 bp TTTAGAGACTGGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCGCGAGGCCTCAAAGAGATaGTCCAGGATGACCTCCCCA +
Preference number: 5 (lower is better)
Translates to: FRDWNKCGNNIAESHRLREASKR*SRMTSP
Trigger: TGGGGAGGTCATCCTGGACAATCTCTTTGAGGCCTC...GCGGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTCTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp GCTCACAGTCAGGAACTTTTTGCCAGGCAGCATCCATCTCCTTCCTCATTGCATCCAAGGCCTTCAGCATaGATCCCCACTCTACAGACT +
Preference number: 5 (lower is better)
Translates to: AHSQELFARQHPSPSSLHPRPSA*IPTLQT
Trigger: AGTCTGTAGAGTGGGGATCAATGCTGAAGGCCTTGG...ATGCAATGAGGAAGGAGATGGATGCTGCCTGGCAAAAAGTTCCTGACTGTGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CAA 90 bp AATAAAGGAGAGGAGAACTTGGTGGCTTTAGCAAACCTCTGTGTGCAAATGGCCCGCATGATGTGCTCTTaGACCGACATCTGCACCTCG +
Preference number: 5 (lower is better)
Translates to: NKGEENLVALANLCVQMARMMCS*TDICTS
Trigger: CGAGGTGCAGATGTCGGTCAAAGAGCACATCATGCG...GGCCATTTGCACACAGAGGTTTGCTAAAGCCACCAAGTTCTCCTCTCCTTTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp GTGTGTGCTGCCACACCTAACATTAGGCAGTACTGGGGACTGGACTCAGGATTTTTGAGATTTCGACACTaGATCACTGTGAGGGTGAGC +
Preference number: 5 (lower is better)
Translates to: VCAATPNIRQYWGLDSGFLRFRH*ITVRVS
Trigger: GCTCACCCTCACAGTGATCAAGTGTCGAAATCTCAA...AAATCCTGAGTCCAGTCCCCAGTACTGCCTAATGTTAGGTGTGGCAGCACACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CAA 90 bp TTTAGAGACTGGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCGCCGAGGGGTCCCCTCTTaGAAGGATTTCTTTACCTCC +
Preference number: 5 (lower is better)
Translates to: FRDWNKCGNNIAESHRLRRGVPS*KDFFTS
Trigger: GGAGGTAAAGAAATCCTTCAAAGAGGGGACCCCTCG...GCGGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp GGAGGAAAGCCAAATAACGCCTATTATTTCATAGGATTCTTAGGAGATGAGCTCAGCTTATCCGCCATGTaGCCTCTGGAGCTGGGGCTC +
Preference number: 5 (lower is better)
Translates to: GGKPNNAYYFIGFLGDELSLSAM*PLELGL
Trigger: GAGCCCCAGCTCCAGAGGCAACATGGCGGATAAGCT...GAGCTCATCTCCTAAGAATCCTATGAAATAATAGGCGTTATTTGGCTTTCCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CAA 90 bp CTTCCTCATTGCATATACTTGTATACCATGTTATACACTAGAGGTTCCCCATGCTTGGCGGCCTCCGACTaGGCATCATCCCCATCCACT +
Preference number: 5 (lower is better)
Translates to: LPHCIYLYTMLYTRGSPCLAASD*ASSPST
Trigger: AGTGGATGGGGATGATGCCAAGTCGGAGGCCGCCAA...GCATGGGGAACCTCTAGTGTATAACATGGTATACAAGTATATGCAATGAGGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CAA 90 bp TATGTCTCCTCTGTGAGGGAAGAGTCCTGGTTAATAAATGGTGAAGCCTATTTAATCTTCCCACAGCTCTaGGCGGCCTCCGACTTGGCA +
Preference number: 5 (lower is better)
Translates to: YVSSVREESWLINGEAYLIFPQL*AASDLA
Trigger: TGCCAAGTCGGAGGCCGCCAAGAGCTGTGGGAAGAT...TAAATAGGCTTCACCATTTATTAACCAGGACTCTTCCCTCACAGAGGAGACATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp AGGCAGCATCCATCTCCTTCCTCATTGCATATACTTGTATACCATGTTATACACACACTGAGATGCAGCTaGCGGTCAGCCAGCTCCTCG +
Preference number: 5 (lower is better)
Translates to: RQHPSPSSLHILVYHVIHTLRCS*RSASSS
Trigger: CGAGGAGCTGGCTGACCGCAAGCTGCATCTCAGTGT...GTGTATAACATGGTATACAAGTATATGCAATGAGGAAGGAGATGGATGCTGCCT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CAA 90 bp ATATTTGAAGAGAAAAATCATCTTTACCCACCAGTCGCTAGCACAAGGCTCATAATCTTCCCACAGCTCTaGGCGGCCTCCGACTTGGCA +
Preference number: 5 (lower is better)
Translates to: IFEEKNHLYPPVASTRLIIFPQL*AASDLA
Trigger: TGCCAAGTCGGAGGCCGCCAAGAGCTGTGGGAAGAT...TATGAGCCTTGTGCTAGCGACTGGTGGGTAAAGATGATTTTTCTCTTCAAATAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp GAATGGAATTCCTTGGCTGTTTATGTTTCCATGGATAACACAGTGGTCATTGAAATCTTCCCACAGCTCTaGGCGGCCTCCGACTTGGCA +
Preference number: 5 (lower is better)
Translates to: EWNSLAVYVSMDNTVVIEIFPQL*AASDLA
Trigger: TGCCAAGTCGGAGGCCGCCAAGAGCTGTGGGAAGAT...TTCAATGACCACTGTGTTATCCATGGAAACATAAACAGCCAAGGAATTCCATTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CAA 90 bp AAGAAAATGTGCTGTGTTCTTCCTGTGGGTGCTGCTGACCCAGCTGGTGATTTTTTGAGATTTCGACACTaGATCACTGTGAGGGTGAGC +
Preference number: 5 (lower is better)
Translates to: KKMCCVLPVGAADPAGDFLRFRH*ITVRVS
Trigger: GCTCACCCTCACAGTGATCAAGTGTCGAAATCTCAA...AAAATCACCAGCTGGGTCAGCAGCACCCACAGGAAGAACACAGCACATTTTCTT
48% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CAA 90 bp TCTGATCACACAGGACAAGTGTCTGGGCCTTGCCCTGCACAAGAGCAGTTAAGAGTGATGTCCATTGCTTaGAGATTTCGACACTTGATC +
Preference number: 5 (lower is better)
Translates to: SDHTGQVSGPCPAQEQLRVMSIA*RFRHLI
Trigger: GATCAAGTGTCGAAATCTCAAAGCAATGGACATCAC...TCTTAACTGCTCTTGTGCAGGGCAAGGCCCAGACACTTGTCCTGTGTGATCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp ATGTTATACACTAGAGGTTCCCCATGCCCCCTTTCCATAAGAGGCCAAGGACTAACCTCACCCACCTCTTaGAAGGATTTCTTTACCTCC +
Preference number: 5 (lower is better)
Translates to: MLYTRGSPCPLSIRGQGLTSPTS*KDFFTS
Trigger: GGAGGTAAAGAAATCCTTCAAAGAGGTGGGTGAGGT...TAGTCCTTGGCCTCTTATGGAAAGGGGGCATGGGGAACCTCTAGTGTATAACAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CAA 90 bp TGTTTAGAGACTGGAACAAGTGTGGAAATAACATTGCTGAGTCCCATCGGCTCCTTGAGATTTCGACACTaGATCACTGTGAGGGTGAGC +
Preference number: 5 (lower is better)
Translates to: CLETGTSVEITLLSPIGSLRFRH*ITVRVS
Trigger: GCTCACCCTCACAGTGATCAAGTGTCGAAATCTCAA...GGAGCCGATGGGACTCAGCAATGTTATTTCCACACTTGTTCCAGTCTCTAAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp TTATTTGATGAATGGAATTCCTTGGCTGTTTATGTTTCCATGGATAACACAGTGTTGGCGGCCTCCGACTaGGCATCATCCCCATCCACT +
Preference number: 5 (lower is better)
Translates to: LFDEWNSLAVYVSMDNTVLAASD*ASSPST
Trigger: AGTGGATGGGGATGATGCCAAGTCGGAGGCCGCCAA...CACTGTGTTATCCATGGAAACATAAACAGCCAAGGAATTCCATTCATCAAATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CAA 90 bp TTATTTGATGAATGGAATTCCTTGGCTGTTTATGTTTCCATGGATAACACAGTGACACTGAGATGCAGCTaGCGGTCAGCCAGCTCCTCG +
Preference number: 5 (lower is better)
Translates to: LFDEWNSLAVYVSMDNTVTLRCS*RSASSS
Trigger: CGAGGAGCTGGCTGACCGCAAGCTGCATCTCAGTGT...CACTGTGTTATCCATGGAAACATAAACAGCCAAGGAATTCCATTCATCAAATAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CAA 90 bp TCCTTCCTCATTGCATATACTTGTATACCATGTTATACACTAGAGGTTCCCCATGAGGCCTCAAAGAGATaGTCCAGGATGACCTCCCCA +
Preference number: 5 (lower is better)
Translates to: SFLIAYTCIPCYTLEVPHEASKR*SRMTSP
Trigger: TGGGGAGGTCATCCTGGACAATCTCTTTGAGGCCTC...ATGGGGAACCTCTAGTGTATAACATGGTATACAAGTATATGCAATGAGGAAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CAA 90 bp TTACTAGAAAAGTGGATCGCTTCTCTTGCCACAATATCCTGTTGGCTCATGTCCTTGAGATTTCGACACTaGATCACTGTGAGGGTGAGC +
Preference number: 5 (lower is better)
Translates to: LLEKWIASLATISCWLMSLRFRH*ITVRVS
Trigger: GCTCACCCTCACAGTGATCAAGTGTCGAAATCTCAA...GGACATGAGCCAACAGGATATTGTGGCAAGAGAAGCGATCCACTTTTCTAGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp CATCTCCTTCCTCATTGCATATACTTGTATACCATGTTATACACTAGAGGTTCCGATGAGCAGGCTCACTaGGTCCATGTTTTCTGGGGG +
Preference number: 5 (lower is better)
Translates to: HLLPHCIYLYTMLYTRGSDEQAH*VHVFWG
Trigger: CCCCCAGAAAACATGGACCAAGTGAGCCTGCTCATC...GGAACCTCTAGTGTATAACATGGTATACAAGTATATGCAATGAGGAAGGAGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CAA 90 bp CTCACTTTATTTGATGAATGGAATTCCTTGGCTGTTTATGTTTCCATGGATAACCTTCCGCAAAAGTCCTaGGCAGGGAGGTCAAAGGCC +
Preference number: 5 (lower is better)
Translates to: LTLFDEWNSLAVYVSMDNLPQKS*AGRSKA
Trigger: GGCCTTTGACCTCCCTGCCAAGGACTTTTGCGGAAG...GTTATCCATGGAAACATAAACAGCCAAGGAATTCCATTCATCAAATAAAGTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CAA 90 bp ACAAATGTGATCATTAACTGTGGAGTGTTGGGAAACATATGGCGTGGTTACTTTCCAAGGCCTTCAGCATaGATCCCCACTCTACAGACT +
Preference number: 5 (lower is better)
Translates to: TNVIINCGVLGNIWRGYFPRPSA*IPTLQT
Trigger: AGTCTGTAGAGTGGGGATCAATGCTGAAGGCCTTGG...AAAGTAACCACGCCATATGTTTCCCAACACTCCACAGTTAATGATCACATTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
CDS-3UTR CAA 90 bp TTATTTGATGAATGGAATTCCTTGGCTGTTTATGTTTCCATGGATAACACAGTGGAGGCCTCAAAGAGATaGTCCAGGATGACCTCCCCA +
Preference number: 5 (lower is better)
Translates to: LFDEWNSLAVYVSMDNTVEASKR*SRMTSP
Trigger: TGGGGAGGTCATCCTGGACAATCTCTTTGAGGCCTC...CACTGTGTTATCCATGGAAACATAAACAGCCAAGGAATTCCATTCATCAAATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS-3UTR CAA 90 bp TCAGGAACTTTTTGCCAGGCAGCATCCATCTCCTTCCTCATTGCATATACTTGTGTGATGTCCATTGCTTaGAGATTTCGACACTTGATC +
Preference number: 5 (lower is better)
Translates to: SGTFCQAASISFLIAYTCVMSIA*RFRHLI
Trigger: GATCAAGTGTCGAAATCTCAAAGCAATGGACATCAC...ACAAGTATATGCAATGAGGAAGGAGATGGATGCTGCCTGGCAAAAAGTTCCTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118117.8
CDS-3UTR CAA 90 bp ACACAGTGGTCATTGAAGATATCAAGAAAATGTGCTGTGTTCTTCCTGTGGGTGGTGATGTCCATTGCTTaGAGATTTCGACACTTGATC +
Preference number: 5 (lower is better)
Translates to: TQWSLKISRKCAVFFLWVVMSIA*RFRHLI
Trigger: GATCAAGTGTCGAAATCTCAAAGCAATGGACATCAC...CACCCACAGGAAGAACACAGCACATTTTCTTGATATCTTCAATGACCACTGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118563.3
CDS GCA 72 bp CCTGAGTCTGCCGCGCTTGGACTCTGCTCCGGGGACTaGAGCTCGAAGCTCCGACAAGTCTCAACGTCCAGC +
Preference number: 6 (lower is better)
Translates to: PESAALGLCSGD*SSKLRQVSTSS
Trigger: GCTGGACGTTGAGACTTGTCGGAGCTTCGAGCTGCAGTCCCCGGAGCAGAGTCCAAGCGCGGCAGACTCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000090697.11
ENSMUST00000121834.8
ENSMUST00000151985.2
ENSMUST00000239027.2
CDS GCA 72 bp CTGACAGAGGTGCCTGAGTCTGCCGCGCTTGGACTCTaGTCCGGGGACTGCAGCTCGAAGCTCCGACAAGTC +
Preference number: 6 (lower is better)
Translates to: LTEVPESAALGL*SGDCSSKLRQV
Trigger: GACTTGTCGGAGCTTCGAGCTGCAGTCCCCGGAGCAGAGTCCAAGCGCGGCAGACTCAGGCACCTCTGTCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000121834.8
ENSMUST00000239027.2
CDS GCA 72 bp GCTGAGTCTGCCGCGCTTGGACTCTGCTCCGGGGACTaGAGCTCGAAGCTCCGACAAGTCTCAACGTCCAGC +
Preference number: 6 (lower is better)
Translates to: AESAALGLCSGD*SSKLRQVSTSS
Trigger: GCTGGACGTTGAGACTTGTCGGAGCTTCGAGCTGCAGTCCCCGGAGCAGAGTCCAAGCGCGGCAGACTCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
CDS GCA 72 bp GCATCCAGCACAGCTGAGTCTGCCGCGCTTGGACTCTaGTCCGGGGACTGCAGCTCGAAGCTCCGACAAGTC +
Preference number: 6 (lower is better)
Translates to: ASSTAESAALGL*SGDCSSKLRQV
Trigger: GACTTGTCGGAGCTTCGAGCTGCAGTCCCCGGAGCAGAGTCCAAGCGCGGCAGACTCAGCTGTGCTGGATGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000132325.10
ENSMUST00000136049.10
CDS GCA 72 bp GGTCTCCCAGTACCTGAGTCTGCCGCGCTTGGACTCTaGTCCGGGGACTGCAGCTCGAAGCTCCGACAAGTC +
Preference number: 6 (lower is better)
Translates to: GLPVPESAALGL*SGDCSSKLRQV
Trigger: GACTTGTCGGAGCTTCGAGCTGCAGTCCCCGGAGCAGAGTCCAAGCGCGGCAGACTCAGGTACTGGGAGACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151985.2
CDS TCA 72 bp AATAACTACCACGGCGAGGAGGCTGACAGAGGTGCCTaGGTCTGCCGCGCTTGGACTCTGCTCCGGGGACTG +
Preference number: 6 (lower is better)
Translates to: NNYHGEEADRGA*VCRAWTLLRGL
Trigger: CAGTCCCCGGAGCAGAGTCCAAGCGCGGCAGACTCAGGCACCTCTGTCAGCCTCCTCGCCGTGGTAGTTATT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090697.11
ENSMUST00000121834.8
ENSMUST00000239027.2
CDS CAA 90 bp TCCAGGAAGCCCAGGGCACTGGGGTCCTTCAGCTTATCCGCCATGTaGCCTCTGGAGCTGGGGCTCTGGAGAGTCTCTGAAGCAGGGTTA +
Preference number: 6 (lower is better)
Translates to: SRKPRALGSFSLSAM*PLELGLWRVSEAGL
Trigger: TAACCCTGCTTCAGAGACTCTCCAGAGCCCCAGCTCCAGAGGCAACATGGCGGATAAGCTGAAGGACCCCAGTGCCCTGGGCTTCCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000090697.11
ENSMUST00000117221.9
ENSMUST00000118117.8
ENSMUST00000118563.3
ENSMUST00000121834.8
ENSMUST00000183637.8
ENSMUST00000239027.2
CDS CCA 72 bp CCACTGAGAAGAGAAATCCAGGAGTGGAGAGGGACCTaGGTCTCCCAGTACCTGAGTCTGCCGCGCTTGGAC +
Preference number: 6 (lower is better)
Translates to: PLRREIQEWRGT*VSQYLSLPRLD
Trigger: GTCCAAGCGCGGCAGACTCAGGTACTGGGAGACCCAGGTCCCTCTCCACTCCTGGATTTCTCTTCTCAGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151985.2