RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SYT5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000004961

Ensembl transcript IDs: ENSMUST00000065957.7, ENSMUST00000206023.2, ENSMUST00000206933.2

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GATACCAGACTTTCCCGGCTCTCCCACCTCCCCGCAGGCTCACTGTaGTTTCTGGGTATAGGAGTGGTATTGGATGGAACTTGGAAACAT +
Preference number: 1 (lower is better)
Translates to: DTRLSRLSHLPAGSL*FLGIGVVLDGTWKH
Trigger: ATGTTTCCAAGTTCCATCCAATACCACTCCTATACCCAGAAACCACAGTGAGCCTGCGGGGAGGTGGGAGAGCCGGGAAAGTCTGGTATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
3UTR-3UTR GCA 90 bp TCAAAGCAGAGGGTAGGACCCTGGGGCAGGGGATACCAGACTTTCCCGGCTCTCGGAAGTAGGAATGAATaGAATGTTTGGGGAGCAGGG +
Preference number: 2 (lower is better)
Translates to: SKQRVGPWGRGYQTFPALGSRNE*NVWGAG
Trigger: CCCTGCTCCCCAAACATTGCATTCATTCCTACTTCC...GAGAGCCGGGAAAGTCTGGTATCCCCTGCCCCAGGGTCCTACCCTCTGCTTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
3UTR-3UTR CCA 90 bp GAGGGTAGGACCCTGGGGCAGGGGATACCAGACTTTCCCGGCTCTCCCACCTCCAGGAGTGGTATTGGATaGAACTTGGAAACATTTCCA +
Preference number: 2 (lower is better)
Translates to: EGRTLGQGIPDFPGSPTSRSGIG*NLETFP
Trigger: TGGAAATGTTTCCAAGTTCCATCCAATACCACTCCT...GGAGGTGGGAGAGCCGGGAAAGTCTGGTATCCCCTGCCCCAGGGTCCTACCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
3UTR-3UTR TCA 90 bp ATTTGGCCCCAAGAGCAGCATAGGAGTCAAGCTGTGTGGGAAGAGGTAAGAGACCAGAGGCTTCACAGCTaGTTGTCAAAGCAGAGGGTA +
Preference number: 2 (lower is better)
Translates to: IWPQEQHRSQAVWEEVRDQRLHS*LSKQRV
Trigger: TACCCTCTGCTTTGACAATCAGCTGTGAAGCCTCTG...GTCTCTTACCTCTTCCCACACAGCTTGACTCCTATGCTGCTCTTGGGGCCAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
3UTR CAA 90 bp CACCTCCCCGCAGGCTCACTGTGGTTTCTGGGTATAGGAGTGGTATaGGATGGAACTTGGAAACATTTCCAATGTGGAAGTAGGAATGAA +
Preference number: 2 (lower is better)
Translates to: HLPAGSLWFLGIGVV*DGTWKHFQCGSRNE
Trigger: TTCATTCCTACTTCCACATTGGAAATGTTTCCAAGTTCCATCCAATACCACTCCTATACCCAGAAACCACAGTGAGCCTGCGGGGAGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
3UTR CCA 72 bp ATTTGGCCCCAAGAGCAGCATAGGAGTCAAGCTGTGTaGGAAGAGGTAAGAGACTGGGAAAAAGGAAATCAG +
Preference number: 3 (lower is better)
Translates to: IWPQEQHRSQAV*EEVRDWEKGNQ
Trigger: CTGATTTCCTTTTTCCCAGTCTCTTACCTCTTCCCACACAGCTTGACTCCTATGCTGCTCTTGGGGCCAAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR CCA 90 bp AGGGTAGGACCCTGGGGCAGGGGATACCAGACTTTCCCGGCTCTCCCACCTCCCTCAGGGTGCTGGTATTaGCCTGGCTCTGTCAGGGGG +
Preference number: 4 (lower is better)
Translates to: RVGPWGRGYQTFPALPPPSGCWY*PGSVRG
Trigger: CCCCCTGACAGAGCCAGGCCAATACCAGCACCCTGA...GGGAGGTGGGAGAGCCGGGAAAGTCTGGTATCCCCTGCCCCAGGGTCCTACCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR GCA 90 bp GCTCTCCCACCTCCCCGCAGGCTCACTGTGGTTTCTGGGTATAGGAGTGGTATTAGCTCTCTCCAGGCCTaGACCGGCCGCCCCAGGTTC +
Preference number: 4 (lower is better)
Translates to: ALPPPRRLTVVSGYRSGISSLQA*TGRPRF
Trigger: GAACCTGGGGCGGCCGGTGCAGGCCTGGAGAGAGCT...AATACCACTCCTATACCCAGAAACCACAGTGAGCCTGCGGGGAGGTGGGAGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR CCA 90 bp GGGAGCAGGGAGAGGGATAAGGGTCTAGGAGCAAGGGATCTGGGGTCAGGTGCTTGGGGCGCCTGGGGTTaGCCAACATGTCAGCCCAGT +
Preference number: 4 (lower is better)
Translates to: GSRERDKGLGARDLGSGAWGAWG*PTCQPS
Trigger: ACTGGGCTGACATGTTGGCCAACCCCAGGCGCCCCA...AGCACCTGACCCCAGATCCCTTGCTCCTAGACCCTTATCCCTCTCCCTGCTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR TCA 90 bp AAGCAGAGGGTAGGACCCTGGGGCAGGGGATACCAGACTTTCCCGGCTCTCCCAAGTCATACACCGCCATaGCCAGCACTCTGCCCCCTA +
Preference number: 4 (lower is better)
Translates to: KQRVGPWGRGYQTFPALPSHTPP*PALCPL
Trigger: TAGGGGGCAGAGTGCTGGTCATGGCGGTGTATGACT...TGGGAGAGCCGGGAAAGTCTGGTATCCCCTGCCCCAGGGTCCTACCCTCTGCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR GCA 90 bp ATTTGGCCCCAAGAGCAGCATAGGAGTCAAGCTGTGTGGGAAGAGGTAAGAGACGACCCAGGCAGGCACTaGGCCCTGCCTGATGCGGCT +
Preference number: 4 (lower is better)
Translates to: IWPQEQHRSQAVWEEVRDDPGRH*ALPDAA
Trigger: AGCCGCATCAGGCAGGGCGCAGTGCCTGCCTGGGTC...GTCTCTTACCTCTTCCCACACAGCTTGACTCCTATGCTGCTCTTGGGGCCAAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR TCA 90 bp GGGAGCAGGGAGAGGGATAAGGGTCTAGGAGCAAGGGATCTGGGGTCAGGTGCTAGCTCCTTCACTTCCTaGAGATGGACTTGGGCTTGG +
Preference number: 4 (lower is better)
Translates to: GSRERDKGLGARDLGSGASSFTS*RWTWAW
Trigger: CCAAGCCCAAGTCCATCTTCAGGAAGTGAAGGAGCT...AGCACCTGACCCCAGATCCCTTGCTCCTAGACCCTTATCCCTCTCCCTGCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR TCA 90 bp GCTCTCCCACCTCCCCGCAGGCTCACTGTGGTTTCTGGGTATAGGAGTGGTATTACTTGGGCTTGGGCCTaGCTCTTTTTGCCCATCCGT +
Preference number: 4 (lower is better)
Translates to: ALPPPRRLTVVSGYRSGITWAWA*LFLPIR
Trigger: ACGGATGGGCAAAAAGAGTCAGGCCCAAGCCCAAGT...AATACCACTCCTATACCCAGAAACCACAGTGAGCCTGCGGGGAGGTGGGAGAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR TCA 90 bp AGGGATAAGGGTCTAGGAGCAAGGGATCTGGGGTCAGGTGCTTGCTTGATGGAAGACAGAAACAACTGCTaGAGACCAGGAGGCCCGAGC +
Preference number: 4 (lower is better)
Translates to: RDKGLGARDLGSGACLMEDRNNC*RPGGPS
Trigger: GCTCGGGCCTCCTGGTCTTCAGCAGTTGTTTCTGTC...TTCCATCAAGCAAGCACCTGACCCCAGATCCCTTGCTCCTAGACCCTTATCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR GCA 90 bp AGGGATAAGGGTCTAGGAGCAAGGGATCTGGGGTCAGGTGCTTGCTTGATGGAAGGGCCTGACTCTTTTTaGCCATCCGTCTCCGACAGC +
Preference number: 4 (lower is better)
Translates to: RDKGLGARDLGSGACLMEGPDSF*PSVSDS
Trigger: GCTGTCGGAGACGGATGGGCAAAAAGAGTCAGGCCC...TTCCATCAAGCAAGCACCTGACCCCAGATCCCTTGCTCCTAGACCCTTATCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR CCA 90 bp GCAGGCTCACTGTGGTTTCTGGGTATAGGAGTGGTATTGGATGGAACTTGGAAACCCGCACCTCCCCGATaGCATCGTTGCGGGAGAACC +
Preference number: 4 (lower is better)
Translates to: AGSLWFLGIGVVLDGTWKPAPPR*HRCGRT
Trigger: GGTTCTCCCGCAACGATGCCATCGGGGAGGTGCGGG...TTTCCAAGTTCCATCCAATACCACTCCTATACCCAGAAACCACAGTGAGCCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR GCA 90 bp AGGGATAAGGGTCTAGGAGCAAGGGATCTGGGGTCAGGTGCTTGCTTGATGGAATTCAGGGTCTGCCGATaGACCTTGGTCTCATGTCGC +
Preference number: 4 (lower is better)
Translates to: RDKGLGARDLGSGACLMEFRVCR*TLVSCR
Trigger: GCGACATGAGACCAAGGTGCATCGGCAGACCCTGAA...TTCCATCAAGCAAGCACCTGACCCCAGATCCCTTGCTCCTAGACCCTTATCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR TCA 90 bp GGCTCACTGTGGTTTCTGGGTATAGGAGTGGTATTGGATGGAACTTGGAAACATCCGCCCCAGGTTCACTaGACTCATAGGCACCCGCAC +
Preference number: 4 (lower is better)
Translates to: GSLWFLGIGVVLDGTWKHPPQVH*THRHPH
Trigger: GTGCGGGTGCCTATGAGTTCAGTGAACCTGGGGCGG...ATGTTTCCAAGTTCCATCCAATACCACTCCTATACCCAGAAACCACAGTGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR CCA 90 bp AGGGATAAGGGTCTAGGAGCAAGGGATCTGGGGTCAGGTGCTTGCTTGATGGAATGGACTTTCTGCACCTaGTCACAGGGCACCTCAAAG +
Preference number: 4 (lower is better)
Translates to: RDKGLGARDLGSGACLMEWTFCT*SQGTSK
Trigger: CTTTGAGGTGCCCTGTGACCAGGTGCAGAAAGTCCA...TTCCATCAAGCAAGCACCTGACCCCAGATCCCTTGCTCCTAGACCCTTATCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR CCA 90 bp CATAGGAGTCAAGCTGTGTGGGAAGAGGTAAGAGACTGGGAAAAAGGAAATCAGTCTGCCGATGCACCTTaGTCTCATGTCGCCTCCGCT +
Preference number: 4 (lower is better)
Translates to: HRSQAVWEEVRDWEKGNQSADAP*SHVASA
Trigger: AGCGGAGGCGACATGAGACCAAGGTGCATCGGCAGA...CTGATTTCCTTTTTCCCAGTCTCTTACCTCTTCCCACACAGCTTGACTCCTATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR CCA 90 bp TCTGGGTATAGGAGTGGTATTGGATGGAACTTGGAAACATTTCCAATGTGGAAGGTGCTGGTATTGGCCTaGCTCTGTCAGGGGGCCGCA +
Preference number: 4 (lower is better)
Translates to: SGYRSGIGWNLETFPMWKVLVLA*LCQGAA
Trigger: TGCGGCCCCCTGACAGAGCCAGGCCAATACCAGCAC...CTTCCACATTGGAAATGTTTCCAAGTTCCATCCAATACCACTCCTATACCCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR GCA 90 bp TCTGGGTATAGGAGTGGTATTGGATGGAACTTGGAAACATTTCCAATGTGGAAGTCTTTGGGAGCCACCTaGAGCTCTCTCCAGGCCTGC +
Preference number: 4 (lower is better)
Translates to: SGYRSGIGWNLETFPMWKSLGAT*SSLQAC
Trigger: GCAGGCCTGGAGAGAGCTGCAGGTGGCTCCCAAAGA...CTTCCACATTGGAAATGTTTCCAAGTTCCATCCAATACCACTCCTATACCCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR CCA 90 bp CTGGGTATAGGAGTGGTATTGGATGGAACTTGGAAACATTTCCAATGTGGAAGTCCGCCACTCTCCCGATaGCCTCATTCTTCCCCAGTT +
Preference number: 4 (lower is better)
Translates to: LGIGVVLDGTWKHFQCGSPPLSR*PHSSPV
Trigger: AACTGGGGAAGAATGAGGCCATCGGGAGAGTGGCGG...ACTTCCACATTGGAAATGTTTCCAAGTTCCATCCAATACCACTCCTATACCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR CCA 90 bp TCACTGTGGTTTCTGGGTATAGGAGTGGTATTGGATGGAACTTGGAAACATTTCTCTCTTGCTCCTCTTTaGGAGCCACCTGCAGCTCTC +
Preference number: 4 (lower is better)
Translates to: SLWFLGIGVVLDGTWKHFSLAPL*EPPAAL
Trigger: GAGAGCTGCAGGTGGCTCCCAAAGAGGAGCAAGAGA...GAAATGTTTCCAAGTTCCATCCAATACCACTCCTATACCCAGAAACCACAGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR TCA 90 bp CTGGGTATAGGAGTGGTATTGGATGGAACTTGGAAACATTTCCAATGTGGAAGTAGGGCACCTCAAAGCTaGAGGCCTCGTTGTAATAGG +
Preference number: 4 (lower is better)
Translates to: LGIGVVLDGTWKHFQCGSRAPQS*RPRCNR
Trigger: CCTATTACAACGAGGCCTTCAGCTTTGAGGTGCCCT...ACTTCCACATTGGAAATGTTTCCAAGTTCCATCCAATACCACTCCTATACCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR GCA 90 bp TCACTGTGGTTTCTGGGTATAGGAGTGGTATTGGATGGAACTTGGAAACATTTCTGTGGATTCAGGGTCTaGCGATGCACCTTGGTCTCA +
Preference number: 4 (lower is better)
Translates to: SLWFLGIGVVLDGTWKHFCGFRV*RCTLVS
Trigger: TGAGACCAAGGTGCATCGGCAGACCCTGAATCCACA...GAAATGTTTCCAAGTTCCATCCAATACCACTCCTATACCCAGAAACCACAGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR CCA 90 bp TCACTGTGGTTTCTGGGTATAGGAGTGGTATTGGATGGAACTTGGAAACATTTCACCTTTTTACCTCCCTaGAGCAGGTGCACCTTCACA +
Preference number: 4 (lower is better)
Translates to: SLWFLGIGVVLDGTWKHFTFLPP*SRCTFT
Trigger: TGTGAAGGTGCACCTGCTCCAGGGAGGTAAAAAGGT...GAAATGTTTCCAAGTTCCATCCAATACCACTCCTATACCCAGAAACCACAGTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
3UTR CAA 72 bp GCAGGCTCACTGTGGTTTCTGGGTATAGGAGTGGTATaGGATGGAACTTGGAAACATTTCCAATGTGGAAGT +
Preference number: 4 (lower is better)
Translates to: AGSLWFLGIGVV*DGTWKHFQCGS
Trigger: ACTTCCACATTGGAAATGTTTCCAAGTTCCATCCAATACCACTCCTATACCCAGAAACCACAGTGAGCCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR GCA 90 bp TATTGGATGGAACTTGGAAACATTTCCAATGTGGAAGTAGGAATGAATGCAATGTCCCCCAGTTTCTCTTaGTCCTCTTTGGGAGCCACC +
Preference number: 4 (lower is better)
Translates to: YWMELGNISNVEVGMNAMSPSFS*SSLGAT
Trigger: GGTGGCTCCCAAAGAGGAGCAAGAGAAACTGGGGGA...CATTGCATTCATTCCTACTTCCACATTGGAAATGTTTCCAAGTTCCATCCAATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS CCA 90 bp GGAGGGACTGACGCACAGAAACGAAGTCCGGGCGGTGCCGGTCCATaGGACCCAGGTCCGGGATCCCGTGGCACAGCGAGAGCGGCCTGT +
Preference number: 5 (lower is better)
Translates to: GGTDAQKRSPGGAGP*DPGPGSRGTARAAC
Trigger: ACAGGCCGCTCTCGCTGTGCCACGGGATCCCGGACCTGGGTCCCATGGACCGGCACCGCCCGGACTTCGTTTCTGTGCGTCAGTCCCTCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206933.2
CDS GCA 90 bp GGCCAACATGTCAGCCCAGTGCCGCAGGCCAGCCCCACCGACTGCTaGGCCCACCGCCACTCTCCCGATGGCCTCATTCTTCCCCAGTTT +
Preference number: 5 (lower is better)
Translates to: GQHVSPVPQASPTDC*AHRHSPDGLILPQF
Trigger: AAACTGGGGAAGAATGAGGCCATCGGGAGAGTGGCGGTGGGCGCAGCAGTCGGTGGGGCTGGCCTGCGGCACTGGGCTGACATGTTGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS GCA 90 bp ACCGGAAGTGGGCGCAGGCAGGCGTGGGAACCAGCAGACCACTGTTaGCCTGAGCGACCGCCAGGCTCCAGGCAGGGTGATAGCAGTGCT +
Preference number: 5 (lower is better)
Translates to: TGSGRRQAWEPADHC*PERPPGSRQGDSSA
Trigger: AGCACTGCTATCACCCTGCCTGGAGCCTGGCGGTCGCTCAGGGCAACAGTGGTCTGCTGGTTCCCACGCCTGCCTGCGCCCACTTCCGGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206933.2
CDS TCA 90 bp TCGGGGTCCTGCGGTGCTTCCCCTTCCTTGCTCTTCCCAAGGGCTTaGACCGGAAGTGGGCGCAGGCAGGCGTGGGAACCAGCAGACCAC +
Preference number: 5 (lower is better)
Translates to: SGSCGASPSLLFPRA*TGSGRRQAWEPADH
Trigger: GTGGTCTGCTGGTTCCCACGCCTGCCTGCGCCCACTTCCGGTTCAAGCCCTTGGGAAGAGCAAGGAAGGGGAAGCACCGCAGGACCCCGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206933.2
CDS GCA 90 bp GTTCCGGGAACATGGCGTCGGGGTCCTGCGGTGCTTCCCCTTCCTTaGTCTTCCCAAGGGCTTGAACCGGAAGTGGGCGCAGGCAGGCGT +
Preference number: 5 (lower is better)
Translates to: VPGTWRRGPAVLPLP*SSQGLEPEVGAGRR
Trigger: ACGCCTGCCTGCGCCCACTTCCGGTTCAAGCCCTTGGGAAGAGCAAGGAAGGGGAAGCACCGCAGGACCCCGACGCCATGTTCCCGGAAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206933.2
CDS GCA 90 bp AAGCAGATGTCCCCCAGTTTCTCTTGCTCCTCTTTGGGAGCCACCTaGAGCTCTCTCCAGGCCTGCACCGGCCGCCCCAGGTTCACTGAA +
Preference number: 5 (lower is better)
Translates to: KQMSPSFSCSSLGAT*SSLQACTGRPRFTE
Trigger: TTCAGTGAACCTGGGGCGGCCGGTGCAGGCCTGGAGAGAGCTGCAGGTGGCTCCCAAAGAGGAGCAAGAGAAACTGGGGGACATCTGCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS CCA 90 bp GCAGGCCAGCCCCACCGACTGCTGCGCCCACCGCCACTCTCCCGATaGCCTCATTCTTCCCCAGTTTGTCATAATCCAGAACAGTCAGCT +
Preference number: 5 (lower is better)
Translates to: AGQPHRLLRPPPLSR*PHSSPVCHNPEQSA
Trigger: AGCTGACTGTTCTGGATTATGACAAACTGGGGAAGAATGAGGCCATCGGGAGAGTGGCGGTGGGCGCAGCAGTCGGTGGGGCTGGCCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR CAA 90 bp AAGCAGAGGGTAGGACCCTGGGGCAGGGGATACCAGACTTTCCCGGCTCTCCCATTCCTGAAGATGGACTaGGGCTTGGGCCTGACTCTT +
Preference number: 5 (lower is better)
Translates to: KQRVGPWGRGYQTFPALPFLKMD*GLGLTL
Trigger: AAGAGTCAGGCCCAAGCCCAAGTCCATCTTCAGGAA...TGGGAGAGCCGGGAAAGTCTGGTATCCCCTGCCCCAGGGTCCTACCCTCTGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS GCA 90 bp AGGAACCTCCTAGGTCCAACGCAGCCAGTCCCTGAGCTTGCAAGATaGCCACCAGGAGCTGGCCAGTCTGGAAGTCATAGTCCAGTGAAT +
Preference number: 5 (lower is better)
Translates to: RNLLGPTQPVPELAR*PPGAGQSGSHSPVN
Trigger: ATTCACTGGACTATGACTTCCAGACTGGCCAGCTCCTGGTGGGCATCTTGCAAGCTCAGGGACTGGCTGCGTTGGACCTAGGAGGTTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS GCA 90 bp GGGACCTTGAAGGCAAATGTCTCTCCAAAGTGTGGATTCAGGGTCTaGCGATGCACCTTGGTCTCATGTCGCCTCCGCTTGTCTGGCAGC +
Preference number: 5 (lower is better)
Translates to: GTLKANVSPKCGFRV*RCTLVSCRLRLSGS
Trigger: GCTGCCAGACAAGCGGAGGCGACATGAGACCAAGGTGCATCGGCAGACCCTGAATCCACACTTTGGAGAGACATTTGCCTTCAAGGTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR CAA 90 bp GCTCTCCCACCTCCCCGCAGGCTCACTGTGGTTTCTGGGTATAGGAGTGGTATTAAGATGGACTTGGGCTaGGGCCTGACTCTTTTTGCC +
Preference number: 5 (lower is better)
Translates to: ALPPPRRLTVVSGYRSGIKMDLG*GLTLFA
Trigger: GGCAAAAAGAGTCAGGCCCAAGCCCAAGTCCATCTT...AATACCACTCCTATACCCAGAAACCACAGTGAGCCTGCGGGGAGGTGGGAGAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS CCA 90 bp GCAGTCGGCCTAGCTGGTGTTTGTCTGATACCTGCTGTCCAGGCATaGATGGTGACCGGTCCAGCTCCTCTATTTCAGGCTGAACCTTAT +
Preference number: 5 (lower is better)
Translates to: AVGLAGVCLIPAVQA*MVTGPAPLFQAEPY
Trigger: ATAAGGTTCAGCCTGAAATAGAGGAGCTGGACCGGTCACCATCCATGCCTGGACAGCAGGTATCAGACAAACACCAGCTAGGCCGACTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS GCA 90 bp TCCAGTGAATACTGCAGTCGGCCTAGCTGGTGTTTGTCTGATACCTaGTGTCCAGGCATGGATGGTGACCGGTCCAGCTCCTCTATTTCA +
Preference number: 5 (lower is better)
Translates to: SSEYCSRPSWCLSDT*CPGMDGDRSSSSIS
Trigger: TGAAATAGAGGAGCTGGACCGGTCACCATCCATGCCTGGACAGCAGGTATCAGACAAACACCAGCTAGGCCGACTGCAGTATTCACTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR CAA 90 bp CATAGGAGTCAAGCTGTGTGGGAAGAGGTAAGAGACTGGGAAAAAGGAAATCAGGTCTGCCGATGCACCTaGGTCTCATGTCGCCTCCGC +
Preference number: 5 (lower is better)
Translates to: HRSQAVWEEVRDWEKGNQVCRCT*VSCRLR
Trigger: GCGGAGGCGACATGAGACCAAGGTGCATCGGCAGAC...CTGATTTCCTTTTTCCCAGTCTCTTACCTCTTCCCACACAGCTTGACTCCTATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR CAA 90 bp GCAGGCTCACTGTGGTTTCTGGGTATAGGAGTGGTATTGGATGGAACTTGGAAAGTCCCCCAGTTTCTCTaGCTCCTCTTTGGGAGCCAC +
Preference number: 5 (lower is better)
Translates to: AGSLWFLGIGVVLDGTWKVPQFL*LLFGSH
Trigger: GTGGCTCCCAAAGAGGAGCAAGAGAAACTGGGGGAC...TTTCCAAGTTCCATCCAATACCACTCCTATACCCAGAAACCACAGTGAGCCTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS-3UTR CAA 90 bp ATTTGGCCCCAAGAGCAGCATAGGAGTCAAGCTGTGTGGGAAGAGGTAAGAGACTCCACGTATGGGACCTaGAAGGCAAATGTCTCTCCA +
Preference number: 5 (lower is better)
Translates to: IWPQEQHRSQAVWEEVRDSTYGT*KANVSP
Trigger: TGGAGAGACATTTGCCTTCAAGGTCCCATACGTGGA...GTCTCTTACCTCTTCCCACACAGCTTGACTCCTATGCTGCTCTTGGGGCCAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS GCA 72 bp GTCAGCCCAGTGCCGCAGGCCAGCCCCACCGACTGCTaGGCCCACCGCCACTCTCCCGATGGCCTCATTCTT +
Preference number: 6 (lower is better)
Translates to: VSPVPQASPTDC*AHRHSPDGLIL
Trigger: AAGAATGAGGCCATCGGGAGAGTGGCGGTGGGCGCAGCAGTCGGTGGGGCTGGCCTGCGGCACTGGGCTGAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS GCA 72 bp CATGTCAGCCCAGTGCCGCAGGCCAGCCCCACCGACTaGTGCGCCCACCGCCACTCTCCCGATGGCCTCATT +
Preference number: 6 (lower is better)
Translates to: HVSPVPQASPTD*CAHRHSPDGLI
Trigger: AATGAGGCCATCGGGAGAGTGGCGGTGGGCGCAGCAGTCGGTGGGGCTGGCCTGCGGCACTGGGCTGACATG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS GCA 72 bp GGGCGCAGGCAGGCGTGGGAACCAGCAGACCACTGTTaGCCTGAGCGACCGCCAGGCTCCAGGCAGGGTGAT +
Preference number: 6 (lower is better)
Translates to: GRRQAWEPADHC*PERPPGSRQGD
Trigger: ATCACCCTGCCTGGAGCCTGGCGGTCGCTCAGGGCAACAGTGGTCTGCTGGTTCCCACGCCTGCCTGCGCCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206933.2
CDS CCA 72 bp GGCAGGCACTGCGCCCTGCCTGATGCGGCTGGAGTCTaGAGGTGTCTTAGGCGCTGGAGACCCCAGGGTCGG +
Preference number: 6 (lower is better)
Translates to: GRHCALPDAAGV*RCLRRWRPQGR
Trigger: CCGACCCTGGGGTCTCCAGCGCCTAAGACACCTCCAGACTCCAGCCGCATCAGGCAGGGCGCAGTGCCTGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065957.7
ENSMUST00000206023.2
CDS CAA 90 bp GTCGGGGTCCTGCGGTGCTTCCCCTTCCTTGCTCTTCCCAAGGGCTaGAACCGGAAGTGGGCGCAGGCAGGCGTGGGAACCAGCAGACCA +
Preference number: 6 (lower is better)
Translates to: VGVLRCFPFLALPKG*NRKWAQAGVGTSRP
Trigger: TGGTCTGCTGGTTCCCACGCCTGCCTGCGCCCACTTCCGGTTCAAGCCCTTGGGAAGAGCAAGGAAGGGGAAGCACCGCAGGACCCCGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206933.2
CDS GCA 72 bp ACGATGGTAGCCAGGACCCAGGCAGGCACTGCGCCCTaGCTGATGCGGCTGGAGTCTGGAGGTGTCTTAGGC +
Preference number: 6 (lower is better)
Translates to: TMVARTQAGTAP*LMRLESGGVLG
Trigger: GCCTAAGACACCTCCAGACTCCAGCCGCATCAGGCAGGGCGCAGTGCCTGCCTGGGTCCTGGCTACCATCGT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065957.7
ENSMUST00000206023.2
CDS GCA 72 bp CCGCCAGGCTCCAGGCAGGGTGATAGCAGTGCTGGTTaGTGGGCAACGAGCCTGTTGCCAAGGCAACGGGAG +
Preference number: 6 (lower is better)
Translates to: PPGSRQGDSSAG*WATSLLPRQRE
Trigger: CTCCCGTTGCCTTGGCAACAGGCTCGTTGCCCAGCAACCAGCACTGCTATCACCCTGCCTGGAGCCTGGCGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206933.2
CDS CAA 72 bp CTGCGGTGCTTCCCCTTCCTTGCTCTTCCCAAGGGCTaGAACCGGAAGTGGGCGCAGGCAGGCGTGGGAACC +
Preference number: 6 (lower is better)
Translates to: LRCFPFLALPKG*NRKWAQAGVGT
Trigger: GGTTCCCACGCCTGCCTGCGCCCACTTCCGGTTCAAGCCCTTGGGAAGAGCAAGGAAGGGGAAGCACCGCAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206933.2
CDS TCA 72 bp TGCGGTGCTTCCCCTTCCTTGCTCTTCCCAAGGGCTTaGACCGGAAGTGGGCGCAGGCAGGCGTGGGAACCA +
Preference number: 6 (lower is better)
Translates to: CGASPSLLFPRA*TGSGRRQAWEP
Trigger: TGGTTCCCACGCCTGCCTGCGCCCACTTCCGGTTCAAGCCCTTGGGAAGAGCAAGGAAGGGGAAGCACCGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206933.2
CDS GCA 72 bp ACATGGCGTCGGGGTCCTGCGGTGCTTCCCCTTCCTTaGTCTTCCCAAGGGCTTGAACCGGAAGTGGGCGCA +
Preference number: 6 (lower is better)
Translates to: TWRRGPAVLPLP*SSQGLEPEVGA
Trigger: TGCGCCCACTTCCGGTTCAAGCCCTTGGGAAGAGCAAGGAAGGGGAAGCACCGCAGGACCCCGACGCCATGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206933.2
CDS CCA 72 bp CCAGGCTCCAGGCAGGGTGATAGCAGTGCTGGTTGCTaGGCAACGAGCCTGTTGCCAAGGCAACGGGAGGGA +
Preference number: 6 (lower is better)
Translates to: PGSRQGDSSAGC*ATSLLPRQREG
Trigger: TCCCTCCCGTTGCCTTGGCAACAGGCTCGTTGCCCAGCAACCAGCACTGCTATCACCCTGCCTGGAGCCTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206933.2
CDS CCA 72 bp CCCTTCCTTGCTCTTCCCAAGGGCTTGAACCGGAAGTaGGCGCAGGCAGGCGTGGGAACCAGCAGACCACTG +
Preference number: 6 (lower is better)
Translates to: PFLALPKGLNRK*AQAGVGTSRPL
Trigger: CAGTGGTCTGCTGGTTCCCACGCCTGCCTGCGCCCACTTCCGGTTCAAGCCCTTGGGAAGAGCAAGGAAGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206933.2
CDS CAA 90 bp TCCAGGCAGGGTGATAGCAGTGCTGGTTGCTGGGCAACGAGCCTGTaGCCAAGGCAACGGGAGGGACTGACGCACAGAAACGAAGTCCGG +
Preference number: 6 (lower is better)
Translates to: SRQGDSSAGCWATSL*PRQREGLTHRNEVR
Trigger: CCGGACTTCGTTTCTGTGCGTCAGTCCCTCCCGTTGCCTTGGCAACAGGCTCGTTGCCCAGCAACCAGCACTGCTATCACCCTGCCTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206933.2
CDS CCA 72 bp CCCCACCGACTGCTGCGCCCACCGCCACTCTCCCGATaGCCTCATTCTTCCCCAGTTTGTCATAATCCAGAA +
Preference number: 6 (lower is better)
Translates to: PHRLLRPPPLSR*PHSSPVCHNPE
Trigger: TTCTGGATTATGACAAACTGGGGAAGAATGAGGCCATCGGGAGAGTGGCGGTGGGCGCAGCAGTCGGTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS CAA 72 bp GGTGATAGCAGTGCTGGTTGCTGGGCAACGAGCCTGTaGCCAAGGCAACGGGAGGGACTGACGCACAGAAAC +
Preference number: 6 (lower is better)
Translates to: GDSSAGCWATSL*PRQREGLTHRN
Trigger: GTTTCTGTGCGTCAGTCCCTCCCGTTGCCTTGGCAACAGGCTCGTTGCCCAGCAACCAGCACTGCTATCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206933.2
CDS CAA 90 bp GTAACTCCGGCCCAGCTCCTTCACTTCCTGAAGATGGACTTGGGCTaGGGCCTGACTCTTTTTGCCCATCCGTCTCCGACAGCGCTTCCG +
Preference number: 6 (lower is better)
Translates to: VTPAQLLHFLKMDLG*GLTLFAHPSPTALP
Trigger: CGGAAGCGCTGTCGGAGACGGATGGGCAAAAAGAGTCAGGCCCAAGCCCAAGTCCATCTTCAGGAAGTGAAGGAGCTGGGCCGGAGTTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS GCA 72 bp TACTGCAGTCGGCCTAGCTGGTGTTTGTCTGATACCTaGTGTCCAGGCATGGATGGTGACCGGTCCAGCTCC +
Preference number: 6 (lower is better)
Translates to: YCSRPSWCLSDT*CPGMDGDRSSS
Trigger: GGAGCTGGACCGGTCACCATCCATGCCTGGACAGCAGGTATCAGACAAACACCAGCTAGGCCGACTGCAGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS GCA 72 bp CTAGGTCCAACGCAGCCAGTCCCTGAGCTTGCAAGATaGCCACCAGGAGCTGGCCAGTCTGGAAGTCATAGT +
Preference number: 6 (lower is better)
Translates to: LGPTQPVPELAR*PPGAGQSGSHS
Trigger: ACTATGACTTCCAGACTGGCCAGCTCCTGGTGGGCATCTTGCAAGCTCAGGGACTGGCTGCGTTGGACCTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS CCA 72 bp CTCCAAAGTGTGGATTCAGGGTCTGCCGATGCACCTTaGTCTCATGTCGCCTCCGCTTGTCTGGCAGCAGAT +
Preference number: 6 (lower is better)
Translates to: LQSVDSGSADAP*SHVASACLAAD
Trigger: ATCTGCTGCCAGACAAGCGGAGGCGACATGAGACCAAGGTGCATCGGCAGACCCTGAATCCACACTTTGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS CAA 72 bp TCTCCAAAGTGTGGATTCAGGGTCTGCCGATGCACCTaGGTCTCATGTCGCCTCCGCTTGTCTGGCAGCAGA +
Preference number: 6 (lower is better)
Translates to: SPKCGFRVCRCT*VSCRLRLSGSR
Trigger: TCTGCTGCCAGACAAGCGGAGGCGACATGAGACCAAGGTGCATCGGCAGACCCTGAATCCACACTTTGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS CAA 90 bp ATCTATGTAACTCCGGCCCAGCTCCTTCACTTCCTGAAGATGGACTaGGGCTTGGGCCTGACTCTTTTTGCCCATCCGTCTCCGACAGCG +
Preference number: 6 (lower is better)
Translates to: IYVTPAQLLHFLKMD*GLGLTLFAHPSPTA
Trigger: CGCTGTCGGAGACGGATGGGCAAAAAGAGTCAGGCCCAAGCCCAAGTCCATCTTCAGGAAGTGAAGGAGCTGGGCCGGAGTTACATAGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS CAA 90 bp ACCGCCATGACCAGCACTCTGCCCCCTAGTTCCACGTATGGGACCTaGAAGGCAAATGTCTCTCCAAAGTGTGGATTCAGGGTCTGCCGA +
Preference number: 6 (lower is better)
Translates to: TAMTSTLPPSSTYGT*KANVSPKCGFRVCR
Trigger: TCGGCAGACCCTGAATCCACACTTTGGAGAGACATTTGCCTTCAAGGTCCCATACGTGGAACTAGGGGGCAGAGTGCTGGTCATGGCGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS GCA 72 bp AATGTCTCTCCAAAGTGTGGATTCAGGGTCTGCCGATaGACCTTGGTCTCATGTCGCCTCCGCTTGTCTGGC +
Preference number: 6 (lower is better)
Translates to: NVSPKCGFRVCR*TLVSCRLRLSG
Trigger: GCCAGACAAGCGGAGGCGACATGAGACCAAGGTGCATCGGCAGACCCTGAATCCACACTTTGGAGAGACATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS GCA 72 bp AAGGCAAATGTCTCTCCAAAGTGTGGATTCAGGGTCTaGCGATGCACCTTGGTCTCATGTCGCCTCCGCTTG +
Preference number: 6 (lower is better)
Translates to: KANVSPKCGFRV*RCTLVSCRLRL
Trigger: CAAGCGGAGGCGACATGAGACCAAGGTGCATCGGCAGACCCTGAATCCACACTTTGGAGAGACATTTGCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS CCA 72 bp CTAGCTGGTGTTTGTCTGATACCTGCTGTCCAGGCATaGATGGTGACCGGTCCAGCTCCTCTATTTCAGGCT +
Preference number: 6 (lower is better)
Translates to: LAGVCLIPAVQA*MVTGPAPLFQA
Trigger: AGCCTGAAATAGAGGAGCTGGACCGGTCACCATCCATGCCTGGACAGCAGGTATCAGACAAACACCAGCTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7
CDS CCA 72 bp GTATGGGACCTTGAAGGCAAATGTCTCTCCAAAGTGTaGATTCAGGGTCTGCCGATGCACCTTGGTCTCATG +
Preference number: 6 (lower is better)
Translates to: VWDLEGKCLSKV*IQGLPMHLGLM
Trigger: CATGAGACCAAGGTGCATCGGCAGACCCTGAATCCACACTTTGGAGAGACATTTGCCTTCAAGGTCCCATAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065957.7