RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SYT10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000063260

Ensembl transcript IDs: ENSMUST00000029441.4

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTCAATaGGCACACGGTTCTAGATCTTTCTGTGATATGGTCTTATTTGGA +
Preference number: 1 (lower is better)
Translates to: VLCARVFSVCRFLIQ*AHGSRSFCDMVLFG
Trigger: TCCAAATAAGACCATATCACAGAAAGATCTAGAACCGTGTGCTCATTGAATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
3UTR TCA 72 bp GCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTCAATaGGCACACGGTTCTAGATCTTTCTGTGATATGGTC +
Preference number: 3 (lower is better)
Translates to: ARVFSVCRFLIQ*AHGSRSFCDMV
Trigger: GACCATATCACAGAAAGATCTAGAACCGTGTGCTCATTGAATCAGAAACCTACACACAGAAAACACACGCGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CCA 90 bp AAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTCAAGTGCCACCTCCTCCCTaGCCGCTCCTATCGGCTGGA +
Preference number: 4 (lower is better)
Translates to: KSNVLCARVFSVCRFLIQVPPPP*PLLSAG
Trigger: TCCAGCCGATAGGAGCGGCCAGGGAGGAGGTGGCAC...TTGAATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR TCA 90 bp TTCAATGAGCACACGGTTCTAGATCTTTCTGTGATATGGTCTTATTTGGAGGCTTTGTCCCACTCCACCTaGCCCGCGAAGCACAGCTCG +
Preference number: 4 (lower is better)
Translates to: FNEHTVLDLSVIWSYLEALSHST*PAKHSS
Trigger: CGAGCTGTGCTTCGCGGGTCAGGTGGAGTGGGACAA...AGCCTCCAAATAAGACCATATCACAGAAAGATCTAGAACCGTGTGCTCATTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR GCA 90 bp AAGAAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTCCTTCTGGCACAGGCTaGTCACACCGTCCTCCTTGC +
Preference number: 4 (lower is better)
Translates to: KKSNVLCARVFSVCRFLIPSGTG*SHRPPC
Trigger: GCAAGGAGGACGGTGTGAGCAGCCTGTGCCAGAAGG...AATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR GCA 90 bp AAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTCAATGGGGGCCACAAGCTTaGTCTTCCAGCATGGCCAGC +
Preference number: 4 (lower is better)
Translates to: KSNVLCARVFSVCRFLIQWGPQA*SSSMAS
Trigger: GCTGGCCATGCTGGAAGAGCAAGCTTGTGGCCCCCA...TTGAATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CCA 90 bp AAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTCAAATGTGCAGCGCCTTCTaGCACAGGCTGCTCACACCG +
Preference number: 4 (lower is better)
Translates to: KSNVLCARVFSVCRFLIQMCSAF*HRLLTP
Trigger: CGGTGTGAGCAGCCTGTGCCAGAAGGCGCTGCACAT...TTGAATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR GCA 90 bp AAGAAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTAGCTCGGTGATGATGTaGAGCGCCTTCTGGCACAGG +
Preference number: 4 (lower is better)
Translates to: KKSNVLCARVFSVCRFLISSVMM*SAFWHR
Trigger: CCTGTGCCAGAAGGCGCTGCACATCATCACCGAGCT...AATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CCA 90 bp AAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTCAAGTGTGGACGGTGGCCTaGGAGAAGAACAGGACCCTT +
Preference number: 4 (lower is better)
Translates to: KSNVLCARVFSVCRFLIQVWTVA*EKNRTL
Trigger: AAGGGTCCTGTTCTTCTCCCAGGCCACCGTCCACAC...TTGAATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CCA 90 bp AAGAAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTTGTCTGCACTTCTGCTaGGATGTCGGGGGATGTGTG +
Preference number: 4 (lower is better)
Translates to: KKSNVLCARVFSVCRFLICLHFC*DVGGCV
Trigger: CACACATCCCCCGACATCCCAGCAGAAGTGCAGACA...AATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTTCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR TCA 90 bp TTCAATGAGCACACGGTTCTAGATCTTTCTGTGATATGGTCTTATTTGGAGGCTAGGGGTGCCAGTGTGTaGTTGGCTTTCGGTGATAGG +
Preference number: 4 (lower is better)
Translates to: FNEHTVLDLSVIWSYLEARGASV*LAFGDR
Trigger: CCTATCACCGAAAGCCAATCACACACTGGCACCCCT...AGCCTCCAAATAAGACCATATCACAGAAAGATCTAGAACCGTGTGCTCATTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CCA 90 bp TTCAATGAGCACACGGTTCTAGATCTTTCTGTGATATGGTCTTATTTGGAGGCTGACTATCAAAGCTGGTaGCCCGGCCAGGTAACTCCA +
Preference number: 4 (lower is better)
Translates to: FNEHTVLDLSVIWSYLEADYQSW*PGQVTP
Trigger: TGGAGTTACCTGGCCGGGCCACCAGCTTTGATAGTC...AGCCTCCAAATAAGACCATATCACAGAAAGATCTAGAACCGTGTGCTCATTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR TCA 90 bp AAGAAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTCGGGGGATGTGTGGCTaGTTTTTATTGCAGGCTCAA +
Preference number: 4 (lower is better)
Translates to: KKSNVLCARVFSVCRFLIRGMCG*FLLQAQ
Trigger: TTGAGCCTGCAATAAAAATCAGCCACACATCCCCCG...AATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTTCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR TCA 90 bp AAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTCAAGTTTCCCACAGGTCTTaGCGTCGTCTTTTCTGTTGC +
Preference number: 4 (lower is better)
Translates to: KSNVLCARVFSVCRFLIQVSHRS*RRLFCC
Trigger: GCAACAGAAAAGACGACGTCAAGACCTGTGGGAAAC...TTGAATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR TCA 90 bp TTCAATGAGCACACGGTTCTAGATCTTTCTGTGATATGGTCTTATTTGGAGGCTCGGTGCACGCGGGTCTaGAATTTCTTCTTCCTATCC +
Preference number: 4 (lower is better)
Translates to: FNEHTVLDLSVIWSYLEARCTRV*NFFFLS
Trigger: GGATAGGAAGAAGAAATTTCAGACCCGCGTGCACCG...AGCCTCCAAATAAGACCATATCACAGAAAGATCTAGAACCGTGTGCTCATTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR TCA 90 bp AAGAAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTAGCAAAGGGAGAACATaGTTTCCCCCAGGTCTATGC +
Preference number: 4 (lower is better)
Translates to: KKSNVLCARVFSVCRFLISKGRT*FPPGLC
Trigger: GCATAGACCTGGGGGAAATCATGTTCTCCCTTTGCT...AATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTTCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CCA 90 bp TTCAATGAGCACACGGTTCTAGATCTTTCTGTGATATGGTCTTATTTGGAGGCTGTGCCAGTGTGTGATTaGCTTTCGGTGATAGGCCAG +
Preference number: 4 (lower is better)
Translates to: FNEHTVLDLSVIWSYLEAVPVCD*LSVIGQ
Trigger: CTGGCCTATCACCGAAAGCCAATCACACACTGGCAC...AGCCTCCAAATAAGACCATATCACAGAAAGATCTAGAACCGTGTGCTCATTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CCA 90 bp TTCAATGAGCACACGGTTCTAGATCTTTCTGTGATATGGTCTTATTTGGAGGCTCTTGACTATCAAAGCTaGTGGCCCGGCCAGGTAACT +
Preference number: 4 (lower is better)
Translates to: FNEHTVLDLSVIWSYLEALDYQS*WPGQVT
Trigger: AGTTACCTGGCCGGGCCACCAGCTTTGATAGTCAAG...AGCCTCCAAATAAGACCATATCACAGAAAGATCTAGAACCGTGTGCTCATTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CCA 90 bp TTCAATGAGCACACGGTTCTAGATCTTTCTGTGATATGGTCTTATTTGGAGGCTTTATGGTGTGGACGGTaGCCTGGGAGAAGAACAGGA +
Preference number: 4 (lower is better)
Translates to: FNEHTVLDLSVIWSYLEALWCGR*PGRRTG
Trigger: TCCTGTTCTTCTCCCAGGCCACCGTCCACACCATAA...AGCCTCCAAATAAGACCATATCACAGAAAGATCTAGAACCGTGTGCTCATTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR TCA 90 bp TTCAATGAGCACACGGTTCTAGATCTTTCTGTGATATGGTCTTATTTGGAGGCTCAACCGCTAACAGGCTaGCTGAAATATCTGTGCCAC +
Preference number: 4 (lower is better)
Translates to: FNEHTVLDLSVIWSYLEAQPLTG*LKYLCH
Trigger: GTGGCACAGATATTTCAGTCAGCCTGTTAGCGGTTG...AGCCTCCAAATAAGACCATATCACAGAAAGATCTAGAACCGTGTGCTCATTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR TCA 90 bp AAGAAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTTTCAGTTGGAGCACTTaGGATGCTTTGTGGAAGGAC +
Preference number: 4 (lower is better)
Translates to: KKSNVLCARVFSVCRFLIFSWST*DALWKD
Trigger: GTCCTTCCACAAAGCATCTCAAGTGCTCCAACTGAA...AATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR GCA 90 bp AAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTCAAGTTTTATCCTCCCGATaGTCGTTCTCGTTTCTCCTC +
Preference number: 4 (lower is better)
Translates to: KSNVLCARVFSVCRFLIQVLSSR*SFSFLL
Trigger: GAGGAGAAACGAGAACGAGCATCGGGAGGATAAAAC...TTGAATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR GCA 90 bp TTCAATGAGCACACGGTTCTAGATCTTTCTGTGATATGGTCTTATTTGGAGGCTGTCGTAATCCATGACTaGAATGCACAGGCTGACCTG +
Preference number: 4 (lower is better)
Translates to: FNEHTVLDLSVIWSYLEAVVIHD*NAQADL
Trigger: CAGGTCAGCCTGTGCATTGCAGTCATGGATTACGAC...AGCCTCCAAATAAGACCATATCACAGAAAGATCTAGAACCGTGTGCTCATTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CCA 90 bp AAGAAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTATGTCGGGGGATGTGTaGCTGATTTTTATTGCAGGC +
Preference number: 4 (lower is better)
Translates to: KKSNVLCARVFSVCRFLIMSGDV*LIFIAG
Trigger: GCCTGCAATAAAAATCAGCCACACATCCCCCGACAT...AATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTTCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CCA 90 bp TTCAATGAGCACACGGTTCTAGATCTTTCTGTGATATGGTCTTATTTGGAGGCTAGCATCTCGTTCCAATaGTCTCTCCCAAGACCCTCA +
Preference number: 4 (lower is better)
Translates to: FNEHTVLDLSVIWSYLEASISFQ*SLPRPS
Trigger: TGAGGGTCTTGGGAGAGACCATTGGAACGAGATGCT...AGCCTCCAAATAAGACCATATCACAGAAAGATCTAGAACCGTGTGCTCATTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR GCA 90 bp TTCAATGAGCACACGGTTCTAGATCTTTCTGTGATATGGTCTTATTTGGAGGCTTCCTTTAAAGCTGTCTaGACTTCTGCTGGGATGTCG +
Preference number: 4 (lower is better)
Translates to: FNEHTVLDLSVIWSYLEASFKAV*TSAGMS
Trigger: CGACATCCCAGCAGAAGTGCAGACAGCTTTAAAGGA...AGCCTCCAAATAAGACCATATCACAGAAAGATCTAGAACCGTGTGCTCATTGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CCA 90 bp AAGAAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTTTATTGCAGGCTCAATaGCTTTGGGTGCTGGCTTTT +
Preference number: 4 (lower is better)
Translates to: KKSNVLCARVFSVCRFLILLQAQ*LWVLAF
Trigger: AAAAGCCAGCACCCAAAGCCATTGAGCCTGCAATAA...AATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CCA 90 bp AAGAAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTCTGCTTGTAGAGTTCTaGTTTTATCCTCCCGATGCT +
Preference number: 4 (lower is better)
Translates to: KKSNVLCARVFSVCRFLILLVEF*FYPPDA
Trigger: AGCATCGGGAGGATAAAACCAGAACTCTACAAGCAG...AATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CCA 90 bp AAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTCAAATACTGTGGCTTCCCTaGAGAGATCAGAGACTTCAA +
Preference number: 4 (lower is better)
Translates to: KSNVLCARVFSVCRFLIQILWLP*RDQRLQ
Trigger: TTGAAGTCTCTGATCTCTCCAGGGAAGCCACAGTAT...TTGAATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CCA 90 bp TTCAATGAGCACACGGTTCTAGATCTTTCTGTGATATGGTCTTATTTGGAGGCTCATACGGCCAGCAGTTaGCAAATAGCAAAGGGAGAA +
Preference number: 4 (lower is better)
Translates to: FNEHTVLDLSVIWSYLEAHTASS*QIAKGE
Trigger: TTCTCCCTTTGCTATTTGCCAACTGCTGGCCGTATG...AGCCTCCAAATAAGACCATATCACAGAAAGATCTAGAACCGTGTGCTCATTGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR TCA 90 bp AAGAAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTTCAGATTTCTGCACTTaGTCACTGTCAAGGTCATAC +
Preference number: 4 (lower is better)
Translates to: KKSNVLCARVFSVCRFLISDFCT*SLSRSY
Trigger: GTATGACCTTGACAGTGATCAAGTGCAGAAATCTGA...AATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR TCA 90 bp AAGAAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTACATCAGAGACACTTTaGCATAAGGATCTGATGACC +
Preference number: 4 (lower is better)
Translates to: KKSNVLCARVFSVCRFLITSETL*HKDLMT
Trigger: GGTCATCAGATCCTTATGTCAAAGTGTCTCTGATGT...AATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR GCA 90 bp TTCAATGAGCACACGGTTCTAGATCTTTCTGTGATATGGTCTTATTTGGAGGCTGTGGCTGATTTTTATTaGAGGCTCAATGGCTTTGGG +
Preference number: 4 (lower is better)
Translates to: FNEHTVLDLSVIWSYLEAVADFY*RLNGFG
Trigger: CCCAAAGCCATTGAGCCTGCAATAAAAATCAGCCAC...AGCCTCCAAATAAGACCATATCACAGAAAGATCTAGAACCGTGTGCTCATTGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CCA 90 bp TTCAATGAGCACACGGTTCTAGATCTTTCTGTGATATGGTCTTATTTGGAGGCTCAGGCTCAATGGCTTTaGGTGCTGGCTTTTCATTTT +
Preference number: 4 (lower is better)
Translates to: FNEHTVLDLSVIWSYLEAQAQWL*VLAFHF
Trigger: AAAATGAAAAGCCAGCACCCAAAGCCATTGAGCCTG...AGCCTCCAAATAAGACCATATCACAGAAAGATCTAGAACCGTGTGCTCATTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CCA 90 bp AAGAAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTTCTGTGGTAGCACAGTaGATATCTTTCCATACTGTG +
Preference number: 4 (lower is better)
Translates to: KKSNVLCARVFSVCRFLISVVAQ*ISFHTV
Trigger: CACAGTATGGAAAGATATCCACTGTGCTACCACAGA...AATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR GCA 90 bp TTCAATGAGCACACGGTTCTAGATCTTTCTGTGATATGGTCTTATTTGGAGGCTGCATGTTTAATCAAGTaGTCCTTTAAAGCTGTCTGC +
Preference number: 4 (lower is better)
Translates to: FNEHTVLDLSVIWSYLEAACLIK*SFKAVC
Trigger: GCAGACAGCTTTAAAGGAGCACTTGATTAAACATGC...AGCCTCCAAATAAGACCATATCACAGAAAGATCTAGAACCGTGTGCTCATTGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CCA 90 bp TTCAATGAGCACACGGTTCTAGATCTTTCTGTGATATGGTCTTATTTGGAGGCTCAATCATGTCGTGTCTaGAAAATCTGTCAAAATCAT +
Preference number: 4 (lower is better)
Translates to: FNEHTVLDLSVIWSYLEAQSCRV*KICQNH
Trigger: ATGATTTTGACAGATTTTCCAGACACGACATGATTG...AGCCTCCAAATAAGACCATATCACAGAAAGATCTAGAACCGTGTGCTCATTGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS GCA 90 bp TATCTGTGCCACCTCCTCCCTGGCCGCTCCTATCGGCTGGAAAGATaGCCGAACACTTGTCCCACTCCACCTGACCCGCGAAGCACAGCT +
Preference number: 5 (lower is better)
Translates to: YLCHLLPGRSYRLER*PNTCPTPPDPRSTA
Trigger: AGCTGTGCTTCGCGGGTCAGGTGGAGTGGGACAAGTGTTCGGGCATCTTTCCAGCCGATAGGAGCGGCCAGGGAGGAGGTGGCACAGATA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS TCA 90 bp CTCCTATCGGCTGGAAAGATGCCCGAACACTTGTCCCACTCCACCTaGCCCGCGAAGCACAGCTCGGTGATGATGTGCAGCGCCTTCTGG +
Preference number: 5 (lower is better)
Translates to: LLSAGKMPEHLSHST*PAKHSSVMMCSAFW
Trigger: CCAGAAGGCGCTGCACATCATCACCGAGCTGTGCTTCGCGGGTCAGGTGGAGTGGGACAAGTGTTCGGGCATCTTTCCAGCCGATAGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS TCA 90 bp CCAGCAAGGCCAGGCCACAGAAGCTTACAACAACCGCTAACAGGCTaGCTGAAATATCTGTGCCACCTCCTCCCTGGCCGCTCCTATCGG +
Preference number: 5 (lower is better)
Translates to: PARPGHRSLQQPLTG*LKYLCHLLPGRSYR
Trigger: CCGATAGGAGCGGCCAGGGAGGAGGTGGCACAGATATTTCAGTCAGCCTGTTAGCGGTTGTTGTAAGCTTCTGTGGCCTGGCCTTGCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS TCA 90 bp CAAAAACTTCAGTTGGAGCACTTGAGATGCTTTGTGGAAGGACACTaGGGTTGGGGGCCACAAGCTTGCTCTTCCAGCATGGCCAGCACA +
Preference number: 5 (lower is better)
Translates to: QKLQLEHLRCFVEGH*GWGPQACSSSMAST
Trigger: TGTGCTGGCCATGCTGGAAGAGCAAGCTTGTGGCCCCCAACCTCAGTGTCCTTCCACAAAGCATCTCAAGTGCTCCAACTGAAGTTTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS CCA 90 bp CTGGAGACATTCATTTGCCTTGGTAGGTGTCTCCTGAAGGAGTTGTaGCGGGATGAAGACGTAGGCTCGGTTGTTTGCCTTTGCACTCGA +
Preference number: 5 (lower is better)
Translates to: LETFICLGRCLLKEL*RDEDVGSVVCLCTR
Trigger: TCGAGTGCAAAGGCAAACAACCGAGCCTACGTCTTCATCCCGCCACAACTCCTTCAGGAGACACCTACCAAGGCAAATGAATGTCTCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS CCA 90 bp TCCTTTAAAGCTGTCTGCACTTCTGCTGGGATGTCGGGGGATGTGTaGCTGATTTTTATTGCAGGCTCAATGGCTTTGGGTGCTGGCTTT +
Preference number: 5 (lower is better)
Translates to: SFKAVCTSAGMSGDV*LIFIAGSMALGAGF
Trigger: AAAGCCAGCACCCAAAGCCATTGAGCCTGCAATAAAAATCAGCCACACATCCCCCGACATCCCAGCAGAAGTGCAGACAGCTTTAAAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CAA 90 bp AAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTCAAGGAAGGACACTGAGGTaGGGGGCCACAAGCTTGCTC +
Preference number: 5 (lower is better)
Translates to: KSNVLCARVFSVCRFLIQGRTLR*GATSLL
Trigger: GAGCAAGCTTGTGGCCCCCAACCTCAGTGTCCTTCC...TTGAATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS GCA 90 bp CTCCTGAAGGAGTTGTGGCGGGATGAAGACGTAGGCTCGGTTGTTTaGCTTTGCACTCGAGCATGTTTAATCAAGTGCTCCTTTAAAGCT +
Preference number: 5 (lower is better)
Translates to: LLKELWRDEDVGSVV*LCTRACLIKCSFKA
Trigger: AGCTTTAAAGGAGCACTTGATTAAACATGCTCGAGTGCAAAGGCAAACAACCGAGCCTACGTCTTCATCCCGCCACAACTCCTTCAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS GCA 90 bp AGTCAACCGATTTCTGCTTGTAGAGTTCTGGTTTTATCCTCCCGATaGTCGTTCTCGTTTCTCCTCTTTGTAAGATGGGTTCAGTGCCCA +
Preference number: 5 (lower is better)
Translates to: SQPISACRVLVLSSR*SFSFLLFVRWVQCP
Trigger: TGGGCACTGAACCCATCTTACAAAGAGGAGAAACGAGAACGAGCATCGGGAGGATAAAACCAGAACTCTACAAGCAGAAATCGGTTGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CAA 90 bp AAGAAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTGCAGGCTCAATGGCTTaGGGTGCTGGCTTTTCATTT +
Preference number: 5 (lower is better)
Translates to: KKSNVLCARVFSVCRFLIAGSMA*GAGFSF
Trigger: AAATGAAAAGCCAGCACCCAAAGCCATTGAGCCTGC...AATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CAA 90 bp AAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTCAATCATACGGCCAGCAGTaGGCAAATAGCAAAGGGAGA +
Preference number: 5 (lower is better)
Translates to: KSNVLCARVFSVCRFLIQSYGQQ*ANSKGR
Trigger: TCTCCCTTTGCTATTTGCCAACTGCTGGCCGTATGA...TTGAATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CAA 90 bp AAGAAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTAGAAGAACAGGACCCTaGACTATCAAAGCTGGTGGC +
Preference number: 5 (lower is better)
Translates to: KKSNVLCARVFSVCRFLIRRTGP*TIKAGG
Trigger: GCCACCAGCTTTGATAGTCAAGGGTCCTGTTCTTCT...AATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CAA 90 bp AAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTCAACTTCAGTTGGAGCACTaGAGATGCTTTGTGGAAGGA +
Preference number: 5 (lower is better)
Translates to: KSNVLCARVFSVCRFLIQLQLEH*RCFVEG
Trigger: TCCTTCCACAAAGCATCTCAAGTGCTCCAACTGAAG...TTGAATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CAA 90 bp AAGAAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTAAGATAATGGCTTCGTaGTACACGGGATTGAGAGTA +
Preference number: 5 (lower is better)
Translates to: KKSNVLCARVFSVCRFLIKIMAS*YTGLRV
Trigger: TACTCTCAATCCCGTGTACAACGAAGCCATTATCTT...AATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CAA 90 bp TTCAATGAGCACACGGTTCTAGATCTTTCTGTGATATGGTCTTATTTGGAGGCTTCTCAAAAACTTCAGTaGGAGCACTTGAGATGCTTT +
Preference number: 5 (lower is better)
Translates to: FNEHTVLDLSVIWSYLEASQKLQ*EHLRCF
Trigger: AAAGCATCTCAAGTGCTCCAACTGAAGTTTTTGAGA...AGCCTCCAAATAAGACCATATCACAGAAAGATCTAGAACCGTGTGCTCATTGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS-3UTR CAA 90 bp AAGAAGTCAAATGTTCTGTGCGCGCGTGTGTTTTCTGTGTGTAGGTTTCTGATTTCGTTGTACACGGGATaGAGAGTATTTTTCTTTGTA +
Preference number: 5 (lower is better)
Translates to: KKSNVLCARVFSVCRFLISLYTG*RVFFFV
Trigger: TACAAAGAAAAATACTCTCAATCCCGTGTACAACGA...AATCAGAAACCTACACACAGAAAACACACGCGCGCACAGAACATTTGACTTCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS GCA 72 bp CACCTCCTCCCTGGCCGCTCCTATCGGCTGGAAAGATaGCCGAACACTTGTCCCACTCCACCTGACCCGCGA +
Preference number: 6 (lower is better)
Translates to: HLLPGRSYRLER*PNTCPTPPDPR
Trigger: TCGCGGGTCAGGTGGAGTGGGACAAGTGTTCGGGCATCTTTCCAGCCGATAGGAGCGGCCAGGGAGGAGGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS TCA 72 bp GGTGTGGACGGTGGCCTGGGAGAAGAACAGGACCCTTaGCTATCAAAGCTGGTGGCCCGGCCAGGTAACTCC +
Preference number: 6 (lower is better)
Translates to: GVDGGLGEEQDP*LSKLVARPGNS
Trigger: GGAGTTACCTGGCCGGGCCACCAGCTTTGATAGTCAAGGGTCCTGTTCTTCTCCCAGGCCACCGTCCACACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS CCA 72 bp GCGAAGCACAGCTCGGTGATGATGTGCAGCGCCTTCTaGCACAGGCTGCTCACACCGTCCTCCTTGCGGAAA +
Preference number: 6 (lower is better)
Translates to: AKHSSVMMCSAF*HRLLTPSSLRK
Trigger: TTTCCGCAAGGAGGACGGTGTGAGCAGCCTGTGCCAGAAGGCGCTGCACATCATCACCGAGCTGTGCTTCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS CCA 72 bp ATCTGTGCCACCTCCTCCCTGGCCGCTCCTATCGGCTaGAAAGATGCCCGAACACTTGTCCCACTCCACCTG +
Preference number: 6 (lower is better)
Translates to: ICATSSLAAPIG*KDARTLVPLHL
Trigger: CAGGTGGAGTGGGACAAGTGTTCGGGCATCTTTCCAGCCGATAGGAGCGGCCAGGGAGGAGGTGGCACAGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS TCA 72 bp GCTGGAAAGATGCCCGAACACTTGTCCCACTCCACCTaGCCCGCGAAGCACAGCTCGGTGATGATGTGCAGC +
Preference number: 6 (lower is better)
Translates to: AGKMPEHLSHST*PAKHSSVMMCS
Trigger: GCTGCACATCATCACCGAGCTGTGCTTCGCGGGTCAGGTGGAGTGGGACAAGTGTTCGGGCATCTTTCCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS CCA 72 bp TGGGAGAAGAACAGGACCCTTGACTATCAAAGCTGGTaGCCCGGCCAGGTAACTCCAGCAAGGGGTGCCAGT +
Preference number: 6 (lower is better)
Translates to: WEKNRTLDYQSW*PGQVTPARGAS
Trigger: ACTGGCACCCCTTGCTGGAGTTACCTGGCCGGGCCACCAGCTTTGATAGTCAAGGGTCCTGTTCTTCTCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS CAA 72 bp GGAGCACTTGAGATGCTTTGTGGAAGGACACTGAGGTaGGGGGCCACAAGCTTGCTCTTCCAGCATGGCCAG +
Preference number: 6 (lower is better)
Translates to: GALEMLCGRTLR*GATSLLFQHGQ
Trigger: CTGGCCATGCTGGAAGAGCAAGCTTGTGGCCCCCAACCTCAGTGTCCTTCCACAAAGCATCTCAAGTGCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS GCA 72 bp GACCTCATTGTGCCCCACCCTGTCGTAATCCATGACTaGAATGCACAGGCTGACCTGGTCCACATTCTCTGG +
Preference number: 6 (lower is better)
Translates to: DLIVPHPVVIHD*NAQADLVHILW
Trigger: CCAGAGAATGTGGACCAGGTCAGCCTGTGCATTGCAGTCATGGATTACGACAGGGTGGGGCACAATGAGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS CAA 72 bp CTTTGTGGAAGGACACTGAGGTTGGGGGCCACAAGCTaGCTCTTCCAGCATGGCCAGCACAACTTCCAGAAG +
Preference number: 6 (lower is better)
Translates to: LCGRTLRLGATS*LFQHGQHNFQK
Trigger: CTTCTGGAAGTTGTGCTGGCCATGCTGGAAGAGCAAGCTTGTGGCCCCCAACCTCAGTGTCCTTCCACAAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS TCA 72 bp CAGTTGGAGCACTTGAGATGCTTTGTGGAAGGACACTaGGGTTGGGGGCCACAAGCTTGCTCTTCCAGCATG +
Preference number: 6 (lower is better)
Translates to: QLEHLRCFVEGH*GWGPQACSSSM
Trigger: CATGCTGGAAGAGCAAGCTTGTGGCCCCCAACCTCAGTGTCCTTCCACAAAGCATCTCAAGTGCTCCAACTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS CAA 90 bp ACTTCAGTTGGAGCACTTGAGATGCTTTGTGGAAGGACACTGAGGTaGGGGGCCACAAGCTTGCTCTTCCAGCATGGCCAGCACAACTTC +
Preference number: 6 (lower is better)
Translates to: TSVGALEMLCGRTLR*GATSLLFQHGQHNF
Trigger: GAAGTTGTGCTGGCCATGCTGGAAGAGCAAGCTTGTGGCCCCCAACCTCAGTGTCCTTCCACAAAGCATCTCAAGTGCTCCAACTGAAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS CCA 72 bp GCTGTCTGCACTTCTGCTGGGATGTCGGGGGATGTGTaGCTGATTTTTATTGCAGGCTCAATGGCTTTGGGT +
Preference number: 6 (lower is better)
Translates to: AVCTSAGMSGDV*LIFIAGSMALG
Trigger: ACCCAAAGCCATTGAGCCTGCAATAAAAATCAGCCACACATCCCCCGACATCCCAGCAGAAGTGCAGACAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS CAA 90 bp CTTGAGATGCTTTGTGGAAGGACACTGAGGTTGGGGGCCACAAGCTaGCTCTTCCAGCATGGCCAGCACAACTTCCAGAAGACAAAAAGG +
Preference number: 6 (lower is better)
Translates to: LEMLCGRTLRLGATS*LFQHGQHNFQKTKR
Trigger: CCTTTTTGTCTTCTGGAAGTTGTGCTGGCCATGCTGGAAGAGCAAGCTTGTGGCCCCCAACCTCAGTGTCCTTCCACAAAGCATCTCAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS CAA 90 bp ACGCTGGAGACATTCATTTGCCTTGGTAGGTGTCTCCTGAAGGAGTaGTGGCGGGATGAAGACGTAGGCTCGGTTGTTTGCCTTTGCACT +
Preference number: 6 (lower is better)
Translates to: TLETFICLGRCLLKE*WRDEDVGSVVCLCT
Trigger: AGTGCAAAGGCAAACAACCGAGCCTACGTCTTCATCCCGCCACAACTCCTTCAGGAGACACCTACCAAGGCAAATGAATGTCTCCAGCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS GCA 72 bp GAGTTGTGGCGGGATGAAGACGTAGGCTCGGTTGTTTaGCTTTGCACTCGAGCATGTTTAATCAAGTGCTCC +
Preference number: 6 (lower is better)
Translates to: ELWRDEDVGSVV*LCTRACLIKCS
Trigger: GGAGCACTTGATTAAACATGCTCGAGTGCAAAGGCAAACAACCGAGCCTACGTCTTCATCCCGCCACAACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS CAA 72 bp TCATACTGGAGCGCAAAGTTAAGTTTCCCACAGGTCTaGACGTCGTCTTTTCTGTTGCCCTCGGAGTCAACC +
Preference number: 6 (lower is better)
Translates to: SYWSAKLSFPQV*TSSFLLPSEST
Trigger: GGTTGACTCCGAGGGCAACAGAAAAGACGACGTCAAGACCTGTGGGAAACTTAACTTTGCGCTCCAGTATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS GCA 72 bp TGGCGGGATGAAGACGTAGGCTCGGTTGTTTGCCTTTaGACTCGAGCATGTTTAATCAAGTGCTCCTTTAAA +
Preference number: 6 (lower is better)
Translates to: WRDEDVGSVVCL*TRACLIKCSFK
Trigger: TTTAAAGGAGCACTTGATTAAACATGCTCGAGTGCAAAGGCAAACAACCGAGCCTACGTCTTCATCCCGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4
CDS GCA 72 bp ATTTCTGCTTGTAGAGTTCTGGTTTTATCCTCCCGATaGTCGTTCTCGTTTCTCCTCTTTGTAAGATGGGTT +
Preference number: 6 (lower is better)
Translates to: ISACRVLVLSSR*SFSFLLFVRWV
Trigger: AACCCATCTTACAAAGAGGAGAAACGAGAACGAGCATCGGGAGGATAAAACCAGAACTCTACAAGCAGAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029441.4