RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SYPL2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027887

Ensembl transcript IDs: ENSMUST00000141387.4

Found 141 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCCGCTTCAGGCCTGACTAGGCAAAGTGGTGGTGCCAGCCCTGGTTaGAGAGGACACGAGTCTCATGAGGACAGAGCTGCCCTTGGCACT +
Preference number: 1 (lower is better)
Translates to: PASGLTRQSGGASPG*RGHESHEDRAALGT
Trigger: AGTGCCAAGGGCAGCTCTGTCCTCATGAGACTCGTGTCCTCTCCAACCAGGGCTGGCACCACCACTTTGCCTAGTCAGGCCTGAAGCGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR GCA 90 bp TATGGATCTGGGTCCCGAAATGAAGAAGCACCAATAGCATCGGGCTaGCCAGGACTGGGGAAGGATGGGGCCTGGCTACTGCATGGAGGC +
Preference number: 1 (lower is better)
Translates to: YGSGSRNEEAPIASG*PGLGKDGAWLLHGG
Trigger: GCCTCCATGCAGTAGCCAGGCCCCATCCTTCCCCAGTCCTGGGCAGCCCGATGCTATTGGTGCTTCTTCATTTCGGGACCCAGATCCATA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR TCA 90 bp CAGACAAGAAGCACTGAGATCCTGCCGTTTGCTGCCCCAGCAGGATaGGGGATAGGAAGCCAGTGGAGGTCTGCCCAGGTTACCAACAGC +
Preference number: 1 (lower is better)
Translates to: QTRSTEILPFAAPAG*GIGSQWRSAQVTNS
Trigger: GCTGTTGGTAACCTGGGCAGACCTCCACTGGCTTCCTATCCCTCATCCTGCTGGGGCAGCAAACGGCAGGATCTCAGTGCTTCTTGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CCA 90 bp CCCATGTATCCTTGTCCCGGGACTCCTGGGCATCTCATGTCACGATaGTCCTTCAGGCCCTCCCAAAGCCCACAAAACCAAGGCCGAGAA +
Preference number: 1 (lower is better)
Translates to: PMYPCPGTPGHLMSR*SFRPSQSPQNQGRE
Trigger: TTCTCGGCCTTGGTTTTGTGGGCTTTGGGAGGGCCTGAAGGACCATCGTGACATGAGATGCCCAGGAGTCCCGGGACAAGGATACATGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR GCA 90 bp GTTTGCTGCCCCAGCAGGATGAGGGATAGGAAGCCAGTGGAGGTCTaGCCAGGTTACCAACAGCTGATGCCCACCCATCCATTCTCTCAA +
Preference number: 1 (lower is better)
Translates to: VCCPSRMRDRKPVEV*PGYQQLMPTHPFSQ
Trigger: TTGAGAGAATGGATGGGTGGGCATCAGCTGTTGGTAACCTGGGCAGACCTCCACTGGCTTCCTATCCCTCATCCTGCTGGGGCAGCAAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR GCA 90 bp CACAGAACTCAGGGCAAGGTTGCCAGTCAGCTTCCCCAAGTAAGATaGTTCAGTCCAGGCAGCAGACAAGAAGCACTGAGATCCTGCCGT +
Preference number: 1 (lower is better)
Translates to: HRTQGKVASQLPQVR*FSPGSRQEALRSCR
Trigger: ACGGCAGGATCTCAGTGCTTCTTGTCTGCTGCCTGGACTGAAGCATCTTACTTGGGGAAGCTGACTGGCAACCTTGCCCTGAGTTCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CCA 90 bp CCATTCTCTCAAATCTCAAAGTCCAGAATGATGGGGGAAGGGAGTTaGAGGAGGAGGGAGAGGAGGAGCAGGAGGAAGAGGAAGAGGAGG +
Preference number: 1 (lower is better)
Translates to: PFSQISKSRMMGEGS*RRRERRSRRKRKRR
Trigger: CCTCCTCTTCCTCTTCCTCCTGCTCCTCCTCTCCCTCCTCCTCCAACTCCCTTCCCCCATCATTCTGGACTTTGAGATTTGAGAGAATGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR TCA 90 bp GGAGAGGAGACACACCAAAGACAAATATGGATCTGGGTCCCGAAATaGAGAAGCACCAATAGCATCGGGCTGCCCAGGACTGGGGAAGGA +
Preference number: 1 (lower is better)
Translates to: GEETHQRQIWIWVPK*RSTNSIGLPRTGEG
Trigger: TCCTTCCCCAGTCCTGGGCAGCCCGATGCTATTGGTGCTTCTTCATTTCGGGACCCAGATCCATATTTGTCTTTGGTGTGTCTCCTCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR GCA 90 bp TGCCAGCAACTTTCCTCACTTTCTTCCTTGGTGCTGCAATGTACTTaGAACTCTCTCTGCTCCCATTGGGTCCGGGTCTCATGTGGACCC +
Preference number: 1 (lower is better)
Translates to: CQQLSSLSSLVLQCT*NSLCSHWVRVSCGP
Trigger: GGGTCCACATGAGACCCGGACCCAATGGGAGCAGAGAGAGTTGCAAGTACATTGCAGCACCAAGGAAGAAAGTGAGGAAAGTTGCTGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CCA 90 bp CACATGGTAAAGTCTACCAGGGCAAAGGGCAAGTTCCCTGCTTGTTaGCCTCCTGCAATAGCTAGAGAAACCAGACACCTCTCCCGCTTC +
Preference number: 1 (lower is better)
Translates to: HMVKSTRAKGKFPAC*PPAIARETRHLSRF
Trigger: GAAGCGGGAGAGGTGTCTGGTTTCTCTAGCTATTGCAGGAGGCCAACAAGCAGGGAACTTGCCCTTTGCCCTGGTAGACTTTACCATGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR GCA 90 bp AGCACACTGGGCTCTGGGAGGGCTAGAGATAGGATACAGATTAGATaGCAGTTATTGAGGGATGCCACAAAATCACTGGTGGGCCCTCCA +
Preference number: 1 (lower is better)
Translates to: STLGSGRARDRIQIR*QLLRDATKSLVGPP
Trigger: TGGAGGGCCCACCAGTGATTTTGTGGCATCCCTCAATAACTGGCATCTAATCTGTATCCTATCTCTAGCCCTCCCAGAGCCCAGTGTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CCA 90 bp GTTAAGGATTCTGAGCCCTGGGCCCCCAAGAAATACATCTTGATGTaGGTAGCATTGAGGAAGGCAAGGGGGTTGGAGAGGGTCGATCAT +
Preference number: 1 (lower is better)
Translates to: VKDSEPWAPKKYILM*VALRKARGLERVDH
Trigger: ATGATCGACCCTCTCCAACCCCCTTGCCTTCCTCAATGCTACCCACATCAAGATGTATTTCTTGGGGGCCCAGGGCTCAGAATCCTTAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR GCA 90 bp AAGCACCACAGAACAACATGCAACATTCTCCCCACATCCTCGATCTaGAATCCCAGAAATAGGAGGCCCATGGTCAGGATGTTGAAGGGG +
Preference number: 1 (lower is better)
Translates to: KHHRTTCNILPTSSI*NPRNRRPMVRMLKG
Trigger: CCCCTTCAACATCCTGACCATGGGCCTCCTATTTCTGGGATTGCAGATCGAGGATGTGGGGAGAATGTTGCATGTTGTTCTGTGGTGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CCA 90 bp CACTACAGTGAGAAGAGGGAAGCATATGGCCCTCGATTTGTCCTTTaGGTCACAGATGGTAGGAGAGCAAACGGAGGCAGCATTGTGGAA +
Preference number: 1 (lower is better)
Translates to: HYSEKREAYGPRFVL*VTDGRRANGGSIVE
Trigger: TTCCACAATGCTGCCTCCGTTTGCTCTCCTACCATCTGTGACCCAAAGGACAAATCGAGGGCCATATGCTTCCCTCTTCTCACTGTAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR TCA 90 bp TATAGGGTGCTACCGAAAGTGTTCCAGCTGAGGGAAAGGAAGGGCTaGGGGAACAGAAAACTTATTCTGCCAGCAACTTTCCTCACTTTC +
Preference number: 1 (lower is better)
Translates to: YRVLPKVFQLRERKG*GNRKLILPATFLTF
Trigger: GAAAGTGAGGAAAGTTGCTGGCAGAATAAGTTTTCTGTTCCCTCAGCCCTTCCTTTCCCTCAGCTGGAACACTTTCGGTAGCACCCTATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR TCA 90 bp ACAGAAAGGTTTGAAAGAACTAGAAAAGGTGCTGGCTTGAGAAAATaGACAGACGGTAAGGGACAGGTGGGCCCATGTATCCTTGTCCCG +
Preference number: 1 (lower is better)
Translates to: TERFERTRKGAGLRK*TDGKGQVGPCILVP
Trigger: CGGGACAAGGATACATGGGCCCACCTGTCCCTTACCGTCTGTTCATTTTCTCAAGCCAGCACCTTTTCTAGTTCTTTCAAACCTTTCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR TCA 90 bp AAGATGGGACAGAAAGGTTTGAAAGAACTAGAAAAGGTGCTGGCTTaGGAAAATGAACAGACGGTAAGGGACAGGTGGGCCCATGTATCC +
Preference number: 1 (lower is better)
Translates to: KMGQKGLKELEKVLA*ENEQTVRDRWAHVS
Trigger: GGATACATGGGCCCACCTGTCCCTTACCGTCTGTTCATTTTCTCAAGCCAGCACCTTTTCTAGTTCTTTCAAACCTTTCTGTCCCATCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR TCA 90 bp GAGCAAACGGAGGCAGCATTGTGGAAGCCACTGTCTTTTGCCTTTTaGGTTTGGTCCAAGTTTGCTAATGAGTCTTGGTTTCTTTGGAGT +
Preference number: 1 (lower is better)
Translates to: EQTEAALWKPLSFAF*VWSKFANESWFLWS
Trigger: ACTCCAAAGAAACCAAGACTCATTAGCAAACTTGGACCAAACTCAAAAGGCAAAAGACAGTGGCTTCCACAATGCTGCCTCCGTTTGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CAA 90 bp GCCCTGGTTGGAGAGGACACGAGTCTCATGAGGACAGAGCTGCCCTaGGCACTTACTGCTGCCCAGCCCCCTGGAGGTAATGAGGTGAAC +
Preference number: 2 (lower is better)
Translates to: ALVGEDTSLMRTELP*ALTAAQPPGGNEVN
Trigger: GTTCACCTCATTACCTCCAGGGGGCTGGGCAGCAGTAAGTGCCAAGGGCAGCTCTGTCCTCATGAGACTCGTGTCCTCTCCAACCAGGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR CCA 90 bp GATGTCACTAGACTGGGGCTTGCCAGAAGCAATTGCCTAGCCAGCAGACTCTGTAGGACTGGGGAAGGATaGGGCCTGGCTACTGCATGG +
Preference number: 2 (lower is better)
Translates to: DVTRLGLARSNCLASRLCRTGEG*GLATAW
Trigger: CCATGCAGTAGCCAGGCCCCATCCTTCCCCAGTCCT...ACAGAGTCTGCTGGCTAGGCAATTGCTTCTGGCAAGCCCCAGTCTAGTGACATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR TCA 90 bp GATGTCACTAGACTGGGGCTTGCCAGAAGCAATTGCCTAGCCAGCAGACTCTGTGGGCCCAAAGAGGGATaGCAGGAGGAATCAGGGAGA +
Preference number: 2 (lower is better)
Translates to: DVTRLGLARSNCLASRLCGPKEG*QEESGR
Trigger: TCTCCCTGATTCCTCCTGTCATCCCTCTTTGGGCCC...ACAGAGTCTGCTGGCTAGGCAATTGCTTCTGGCAAGCCCCAGTCTAGTGACATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR GCA 90 bp CCAGAAGTCCTCTGGTCTTGGCTTCTTCTTGGCAAATGTTCGCAGCACTGTTTAGCCCTTGGCACTTACTaGTGCCCAGCCCCCTGGAGG +
Preference number: 2 (lower is better)
Translates to: PEVLWSWLLLGKCSQHCLALGTY*CPAPWR
Trigger: CCTCCAGGGGGCTGGGCAGCAGTAAGTGCCAAGGGC...TAAACAGTGCTGCGAACATTTGCCAAGAAGAAGCCAAGACCAGAGGACTTCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CAA 90 bp TCTGAGCCCTGGGCCCCCAAGAAATACATCTTGATGTGGGTAGCATaGAGGAAGGCAAGGGGGTTGGAGAGGGTCGATCATGTCATGAGG +
Preference number: 2 (lower is better)
Translates to: SEPWAPKKYILMWVA*RKARGLERVDHVMR
Trigger: CCTCATGACATGATCGACCCTCTCCAACCCCCTTGCCTTCCTCAATGCTACCCACATCAAGATGTATTTCTTGGGGGCCCAGGGCTCAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR TCA 90 bp CCTTCAGGCCCTCCCAAAGCCCACAAAACCAAGGCCGAGAAGGAGAAGGGAGTATCTCAAAGTCCAGAATaGTGGGGGAAGGGAGTTGGA +
Preference number: 2 (lower is better)
Translates to: PSGPPKAHKTKAEKEKGVSQSPE*WGKGVG
Trigger: TCCAACTCCCTTCCCCCATCATTCTGGACTTTGAGA...TACTCCCTTCTCCTTCTCGGCCTTGGTTTTGTGGGCTTTGGGAGGGCCTGAAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR TCA 90 bp GCCCAGTTGGTACCCTCTGGCCTTCGGGCCCAAAGAGGGATGACAGGAGGAATCGAAAAGGTGCTGGCTTaGGAAAATGAACAGACGGTA +
Preference number: 2 (lower is better)
Translates to: AQLVPSGLRAQRGMTGGIEKVLA*ENEQTV
Trigger: TACCGTCTGTTCATTTTCTCAAGCCAGCACCTTTTC...GATTCCTCCTGTCATCCCTCTTTGGGCCCGAAGGCCAGAGGGTACCAACTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR GCA 90 bp TTGAGGAAGGCAAGGGGGTTGGAGAGGGTCGATCATGTCATGAGGACAGGTTGGAAGGCAGATGGCATTTaGCCAGTTGGTACCCTCTGG +
Preference number: 2 (lower is better)
Translates to: LRKARGLERVDHVMRTGWKADGI*PVGTLW
Trigger: CCAGAGGGTACCAACTGGGCAAATGCCATCTGCCTT...CCAACCTGTCCTCATGACATGATCGACCCTCTCCAACCCCCTTGCCTTCCTCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CAA 90 bp TCCATTCTCTCAAATCTCAAAGTCCAGAATGATGGGGGAAGGGAGTaGGAGGAGGAGGGAGAGGAGGAGCAGGAGGAAGAGGAAGAGGAG +
Preference number: 2 (lower is better)
Translates to: SILSNLKVQNDGGRE*EEEGEEEQEEEEEE
Trigger: CTCCTCTTCCTCTTCCTCCTGCTCCTCCTCTCCCTCCTCCTCCAACTCCCTTCCCCCATCATTCTGGACTTTGAGATTTGAGAGAATGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CAA 90 bp CCCAAAGTTAAGGATTCTGAGCCCTGGGCCCCCAAGAAATACATCTaGATGTGGGTAGCATTGAGGAAGGCAAGGGGGTTGGAGAGGGTC +
Preference number: 2 (lower is better)
Translates to: PKVKDSEPWAPKKYI*MWVALRKARGLERV
Trigger: GACCCTCTCCAACCCCCTTGCCTTCCTCAATGCTACCCACATCAAGATGTATTTCTTGGGGGCCCAGGGCTCAGAATCCTTAACTTTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR GCA 90 bp AAGAGGGAAGCATATGGCCCTCGATTTGTCCTTTGGGTCACAGATGGTAGGAGAATGGGGCCTGGCTACTaGATGGAGGCGAGAGACAAG +
Preference number: 2 (lower is better)
Translates to: KREAYGPRFVLWVTDGRRMGPGY*MEARDK
Trigger: CTTGTCTCTCGCCTCCATGCAGTAGCCAGGCCCCAT...TCTCCTACCATCTGTGACCCAAAGGACAAATCGAGGGCCATATGCTTCCCTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR CCA 90 bp AAGAGGGAAGCATATGGCCCTCGATTTGTCCTTTGGGTCACAGATGGTAGGAGAGGTGCCAGCCCTGGTTaGAGAGGACACGAGTCTCAT +
Preference number: 2 (lower is better)
Translates to: KREAYGPRFVLWVTDGRRGASPG*RGHESH
Trigger: ATGAGACTCGTGTCCTCTCCAACCAGGGCTGGCACC...TCTCCTACCATCTGTGACCCAAAGGACAAATCGAGGGCCATATGCTTCCCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CAA 90 bp AGCGTGAACACTACAGTGAGAAGAGGGAAGCATATGGCCCTCGATTaGTCCTTTGGGTCACAGATGGTAGGAGAGCAAACGGAGGCAGCA +
Preference number: 2 (lower is better)
Translates to: SVNTTVRRGKHMALD*SFGSQMVGEQTEAA
Trigger: TGCTGCCTCCGTTTGCTCTCCTACCATCTGTGACCCAAAGGACAAATCGAGGGCCATATGCTTCCCTCTTCTCACTGTAGTGTTCACGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR TCA 90 bp GTTAAGGATTCTGAGCCCTGGGCCCCCAAGAAATACATCTTGATGTGGGTAGCACGAAAGTGTTCCAGCTaGGGGAAAGGAAGGGCTGAG +
Preference number: 2 (lower is better)
Translates to: VKDSEPWAPKKYILMWVARKCSS*GKGRAE
Trigger: CTCAGCCCTTCCTTTCCCTCAGCTGGAACACTTTCG...TGCTACCCACATCAAGATGTATTTCTTGGGGGCCCAGGGCTCAGAATCCTTAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR GCA 90 bp CCAGAAGTCCTCTGGTCTTGGCTTCTTCTTGGCAAATGTTCGCAGCACTGTTTAGATCCTGCCGTTTGCTaGCCCAGCAGGATGAGGGAT +
Preference number: 2 (lower is better)
Translates to: PEVLWSWLLLGKCSQHCLDPAVC*PSRMRD
Trigger: ATCCCTCATCCTGCTGGGGCAGCAAACGGCAGGATC...TAAACAGTGCTGCGAACATTTGCCAAGAAGAAGCCAAGACCAGAGGACTTCTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR GCA 90 bp TTGAGGAAGGCAAGGGGGTTGGAGAGGGTCGATCATGTCATGAGGACAGGTTGGGTGCTGCAATGTACTTaGAACTCTCTCTGCTCCCAT +
Preference number: 2 (lower is better)
Translates to: LRKARGLERVDHVMRTGWVLQCT*NSLCSH
Trigger: ATGGGAGCAGAGAGAGTTGCAAGTACATTGCAGCAC...CCAACCTGTCCTCATGACATGATCGACCCTCTCCAACCCCCTTGCCTTCCTCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR CCA 90 bp TGGAAAGACCATAGCCTAAATCAAGACTCTCTTGGCCATAGCCAGACTCTTGCCGGGATAGGAAGCCAGTaGAGGTCTGCCCAGGTTACC +
Preference number: 2 (lower is better)
Translates to: WKDHSLNQDSLGHSQTLAGIGSQ*RSAQVT
Trigger: GGTAACCTGGGCAGACCTCCACTGGCTTCCTATCCC...GGCAAGAGTCTGGCTATGGCCAAGAGAGTCTTGATTTAGGCTATGGTCTTTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR TCA 90 bp GATGTCACTAGACTGGGGCTTGCCAGAAGCAATTGCCTAGCCAGCAGACTCTGTAACTTGGGCCCCAAATaGGAACACTTTATCCGTCAC +
Preference number: 2 (lower is better)
Translates to: DVTRLGLARSNCLASRLCNLGPK*EHFIRH
Trigger: GTGACGGATAAAGTGTTCTCATTTGGGGCCCAAGTT...ACAGAGTCTGCTGGCTAGGCAATTGCTTCTGGCAAGCCCCAGTCTAGTGACATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR TCA 90 bp AAGAGGGAAGCATATGGCCCTCGATTTGTCCTTTGGGTCACAGATGGTAGGAGACCATGGTCAGGATGTTaGAGGGGACTCATGTCTAAG +
Preference number: 2 (lower is better)
Translates to: KREAYGPRFVLWVTDGRRPWSGC*RGLMSK
Trigger: CTTAGACATGAGTCCCCTTCAACATCCTGACCATGG...TCTCCTACCATCTGTGACCCAAAGGACAAATCGAGGGCCATATGCTTCCCTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR GCA 90 bp AAGAGGGAAGCATATGGCCCTCGATTTGTCCTTTGGGTCACAGATGGTAGGAGACTTGCCAGAAGCAATTaGCTAGCCAGCAGACTCTGT +
Preference number: 2 (lower is better)
Translates to: KREAYGPRFVLWVTDGRRLARSN*LASRLC
Trigger: ACAGAGTCTGCTGGCTAGGCAATTGCTTCTGGCAAG...TCTCCTACCATCTGTGACCCAAAGGACAAATCGAGGGCCATATGCTTCCCTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR CCA 90 bp GATGTCACTAGACTGGGGCTTGCCAGAAGCAATTGCCTAGCCAGCAGACTCTGTCCTCACTTTCTTCCTTaGTGCTGCAATGTACTTGCA +
Preference number: 2 (lower is better)
Translates to: DVTRLGLARSNCLASRLCPHFLP*CCNVLA
Trigger: TGCAAGTACATTGCAGCACCAAGGAAGAAAGTGAGG...ACAGAGTCTGCTGGCTAGGCAATTGCTTCTGGCAAGCCCCAGTCTAGTGACATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CAA 90 bp AAGAAATACATCTTGATGTGGGTAGCATTGAGGAAGGCAAGGGGGTaGGAGAGGGTCGATCATGTCATGAGGACAGGTTGGCACAAGGTA +
Preference number: 2 (lower is better)
Translates to: KKYILMWVALRKARG*ERVDHVMRTGWHKV
Trigger: TACCTTGTGCCAACCTGTCCTCATGACATGATCGACCCTCTCCAACCCCCTTGCCTTCCTCAATGCTACCCACATCAAGATGTATTTCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR TCA 90 bp CAAACACAGTTTGAGTCGAAGCTGCTCCCAGATCCCCACAGGGACTTGTTTGAAATCTGGGTCCCGAAATaGAGAAGCACCAATAGCATC +
Preference number: 2 (lower is better)
Translates to: QTQFESKLLPDPHRDLFEIWVPK*RSTNSI
Trigger: GATGCTATTGGTGCTTCTTCATTTCGGGACCCAGAT...TTCAAACAAGTCCCTGTGGGGATCTGGGAGCAGCTTCGACTCAAACTGTGTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CAA 90 bp GTAAATGTGACATGTGACTGTCTGAGGAGATGGATAGGTGTGAGTTaGTGCAGCGTGAACACTACAGTGAGAAGAGGGAAGCATATGGCC +
Preference number: 2 (lower is better)
Translates to: VNVTCDCLRRWIGVS*CSVNTTVRRGKHMA
Trigger: GGCCATATGCTTCCCTCTTCTCACTGTAGTGTTCACGCTGCACAAACTCACACCTATCCATCTCCTCAGACAGTCACATGTCACATTTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR GCA 90 bp TCCAGAAAGTACCTTAATCACCCACCTTCTCAGCTGATAATATTTCTTCCCACCGCCCTGGAGTACGAATaGTCGGTGGGAGTGGATAAC +
Preference number: 2 (lower is better)
Translates to: SRKYLNHPPSQLIIFLPTALEYE*SVGVDN
Trigger: GTTATCCACTCCCACCGAGCATTCGTACTCCAGGGC...GGTGGGAAGAAATATTATCAGCTGAGAAGGTGGGTGATTAAGGTACTTTCTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR CCA 90 bp AAAGATGGGACAGAAAGGTTTGAAAGAACTAGAAAAGGTGCTGGCTTGAGAAAAATGGTGGGAGCACACTaGGCTCTGGGAGGGCTAGAG +
Preference number: 2 (lower is better)
Translates to: KDGTERFERTRKGAGLRKMVGAH*ALGGLE
Trigger: CTCTAGCCCTCCCAGAGCCCAGTGTGCTCCCACCAT...TTTTCTCAAGCCAGCACCTTTTCTAGTTCTTTCAAACCTTTCTGTCCCATCTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR CCA 90 bp AAGAGGGAAGCATATGGCCCTCGATTTGTCCTTTGGGTCACAGATGGTAGGAGAGAAGTCCTCTGGTCTTaGCTTCTTCTTGGCAAATGT +
Preference number: 2 (lower is better)
Translates to: KREAYGPRFVLWVTDGRREVLWS*LLLGKC
Trigger: ACATTTGCCAAGAAGAAGCCAAGACCAGAGGACTTC...TCTCCTACCATCTGTGACCCAAAGGACAAATCGAGGGCCATATGCTTCCCTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR TCA 90 bp AAGAGGGAAGCATATGGCCCTCGATTTGTCCTTTGGGTCACAGATGGTAGGAGACTGTCTTTTGCCTTTTaGGTTTGGTCCAAGTTTGCT +
Preference number: 2 (lower is better)
Translates to: KREAYGPRFVLWVTDGRRLSFAF*VWSKFA
Trigger: AGCAAACTTGGACCAAACTCAAAAGGCAAAAGACAG...TCTCCTACCATCTGTGACCCAAAGGACAAATCGAGGGCCATATGCTTCCCTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR GCA 90 bp AATTGGGAAACGGCTGGTTTCTTCCTTCTTTATCATCTTTCCCTAAGCAACCCTGATAATGGGTCTCCCTaGTTCACACATGGTGGGAGC +
Preference number: 2 (lower is better)
Translates to: NWETAGFFLLYHLSLSNPDNGSP*FTHGGS
Trigger: GCTCCCACCATGTGTGAAGCAGGGAGACCCATTATC...AGGGTTGCTTAGGGAAAGATGATAAAGAAGGAAGAAACCAGCCGTTTCCCAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR GCA 90 bp AAGAGGGAAGCATATGGCCCTCGATTTGTCCTTTGGGTCACAGATGGTAGGAGAGAAGCCACTGTCTTTTaGCTTTTGAGTTTGGTCCAA +
Preference number: 2 (lower is better)
Translates to: KREAYGPRFVLWVTDGRREATVF*LLSLVQ
Trigger: TTGGACCAAACTCAAAAGGCAAAAGACAGTGGCTTC...TCTCCTACCATCTGTGACCCAAAGGACAAATCGAGGGCCATATGCTTCCCTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR TCA 90 bp CCAGAAGTCCTCTGGTCTTGGCTTCTTCTTGGCAAATGTTCGCAGCACTGTTTATTAGATGCCAGTTATTaGGGGATGCCACAAAATCAC +
Preference number: 2 (lower is better)
Translates to: PEVLWSWLLLGKCSQHCLLDASY*GMPQNH
Trigger: GTGATTTTGTGGCATCCCTCAATAACTGGCATCTAA...TAAACAGTGCTGCGAACATTTGCCAAGAAGAAGCCAAGACCAGAGGACTTCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR CCA 90 bp AAGGAGAGGAGTGTCTTGGTAGAAATGCTGAAATTTGTCCAAGAACATAGAGCGGGCCAGTTGCTAACTTaGGCCCCAAATGAGAACACT +
Preference number: 2 (lower is better)
Translates to: KERSVLVEMLKFVQEHRAGQLLT*APNENT
Trigger: AGTGTTCTCATTTGGGGCCCAAGTTAGCAACTGGCC...CGCTCTATGTTCTTGGACAAATTTCAGCATTTCTACCAAGACACTCCTCTCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR GCA 90 bp TCCAGAAAGTACCTTAATCACCCACCTTCTCAGCTGATAATATTTCTTCCCACCCCAGTTATTGAGGGATaGCACAAAATCACTGGTGGG +
Preference number: 2 (lower is better)
Translates to: SRKYLNHPPSQLIIFLPTPVIEG*HKITGG
Trigger: CCCACCAGTGATTTTGTGGCATCCCTCAATAACTGG...GGTGGGAAGAAATATTATCAGCTGAGAAGGTGGGTGATTAAGGTACTTTCTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR TCA 90 bp AAGCCAAGTTTGGGAGCAATTAAGTCAAGGTCTGTGACTTTCTGCCTCCCATATTCCAAATTATTTTACTaGATGGCTCGGGAGCATCTG +
Preference number: 2 (lower is better)
Translates to: KPSLGAIKSRSVTFCLPYSKLFY*MAREHL
Trigger: CAGATGCTCCCGAGCCATTCAGTAAAATAATTTGGA...ATATGGGAGGCAGAAAGTCACAGACCTTGACTTAATTGCTCCCAAACTTGGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR GCA 90 bp AAGCCAAGTTTGGGAGCAATTAAGTCAAGGTCTGTGACTTTCTGCCTCCCATATAGGATACAGATTAGATaGCAGTTATTGAGGGATGCC +
Preference number: 2 (lower is better)
Translates to: KPSLGAIKSRSVTFCLPYRIQIR*QLLRDA
Trigger: GGCATCCCTCAATAACTGGCATCTAATCTGTATCCT...ATATGGGAGGCAGAAAGTCACAGACCTTGACTTAATTGCTCCCAAACTTGGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR CCA 90 bp CAGTTTGAGTCGAAGCTGCTCCCAGATCCCCACAGGGACTTGTTTGAAGAAAAAAAATTGGGAAACGGCTaGTTTCTTCCTTCTTTATCA +
Preference number: 2 (lower is better)
Translates to: QFESKLLPDPHRDLFEEKKLGNG*FLPSLS
Trigger: TGATAAAGAAGGAAGAAACCAGCCGTTTCCCAATTT...TTTTTCTTCAAACAAGTCCCTGTGGGGATCTGGGAGCAGCTTCGACTCAAACTG
43% GC, longest homopolymer 8 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR CCA 90 bp TCCAGAAAGTACCTTAATCACCCACCTTCTCAGCTGATAATATTTCTTCCCACCTGTTCTTTGTACCTCTaGAGCTGGAGGCAAAACTGT +
Preference number: 2 (lower is better)
Translates to: SRKYLNHPPSQLIIFLPTCSLYL*SWRQNC
Trigger: ACAGTTTTGCCTCCAGCTCCAGAGGTACAAAGAACA...GGTGGGAAGAAATATTATCAGCTGAGAAGGTGGGTGATTAAGGTACTTTCTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR TCA 90 bp TCCAGAAAGTACCTTAATCACCCACCTTCTCAGCTGATAATATTTCTTCCCACCCCACAGGGACTTGTTTaGAGAAAAATGGTCACTCTT +
Preference number: 2 (lower is better)
Translates to: SRKYLNHPPSQLIIFLPTPQGLV*RKMVTL
Trigger: AAGAGTGACCATTTTTCTTCAAACAAGTCCCTGTGG...GGTGGGAAGAAATATTATCAGCTGAGAAGGTGGGTGATTAAGGTACTTTCTGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR CCA 90 bp GAGTTGCAAGGAGAGGAGTGTCTTGGTAGAAATGCTGAAATTTGTCCAAGAACAAAATACATCTTGATGTaGGTAGCATTGAGGAAGGCA +
Preference number: 2 (lower is better)
Translates to: ELQGEECLGRNAEICPRTKYILM*VALRKA
Trigger: TGCCTTCCTCAATGCTACCCACATCAAGATGTATTT...TGTTCTTGGACAAATTTCAGCATTTCTACCAAGACACTCCTCTCCTTGCAACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR CCA 90 bp TCCAGAAAGTACCTTAATCACCCACCTTCTCAGCTGATAATATTTCTTCCCACCTTTGCTAATGAGTCTTaGTTTCTTTGGAGTAATTGG +
Preference number: 2 (lower is better)
Translates to: SRKYLNHPPSQLIIFLPTFANES*FLWSNW
Trigger: CCAATTACTCCAAAGAAACCAAGACTCATTAGCAAA...GGTGGGAAGAAATATTATCAGCTGAGAAGGTGGGTGATTAAGGTACTTTCTGGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CCA 72 bp GGCCTGACTAGGCAAAGTGGTGGTGCCAGCCCTGGTTaGAGAGGACACGAGTCTCATGAGGACAGAGCTGCC +
Preference number: 3 (lower is better)
Translates to: GLTRQSGGASPG*RGHESHEDRAA
Trigger: GGCAGCTCTGTCCTCATGAGACTCGTGTCCTCTCCAACCAGGGCTGGCACCACCACTTTGCCTAGTCAGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR TCA 72 bp AGCACTGAGATCCTGCCGTTTGCTGCCCCAGCAGGATaGGGGATAGGAAGCCAGTGGAGGTCTGCCCAGGTT +
Preference number: 3 (lower is better)
Translates to: STEILPFAAPAG*GIGSQWRSAQV
Trigger: AACCTGGGCAGACCTCCACTGGCTTCCTATCCCTCATCCTGCTGGGGCAGCAAACGGCAGGATCTCAGTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR GCA 72 bp CCCAGCAGGATGAGGGATAGGAAGCCAGTGGAGGTCTaGCCAGGTTACCAACAGCTGATGCCCACCCATCCA +
Preference number: 3 (lower is better)
Translates to: PSRMRDRKPVEV*PGYQQLMPTHP
Trigger: TGGATGGGTGGGCATCAGCTGTTGGTAACCTGGGCAGACCTCCACTGGCTTCCTATCCCTCATCCTGCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CCA 72 bp CCTTGTCCCGGGACTCCTGGGCATCTCATGTCACGATaGTCCTTCAGGCCCTCCCAAAGCCCACAAAACCAA +
Preference number: 3 (lower is better)
Translates to: PCPGTPGHLMSR*SFRPSQSPQNQ
Trigger: TTGGTTTTGTGGGCTTTGGGAGGGCCTGAAGGACCATCGTGACATGAGATGCCCAGGAGTCCCGGGACAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CCA 72 bp CCCAGGACTGGGGAAGGATGGGGCCTGGCTACTGCATaGAGGCGAGAGACAAGGACAGATAACCCTCTTTGT +
Preference number: 3 (lower is better)
Translates to: PRTGEGWGLATA*RRETRTDNPLC
Trigger: ACAAAGAGGGTTATCTGTCCTTGTCTCTCGCCTCCATGCAGTAGCCAGGCCCCATCCTTCCCCAGTCCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR GCA 72 bp ACTGGTGGGCCCTCCACACAGAACTCAGGGCAAGGTTaGCAGTCAGCTTCCCCAAGTAAGATGCTTCAGTCC +
Preference number: 3 (lower is better)
Translates to: TGGPSTQNSGQG*QSASPSKMLQS
Trigger: GGACTGAAGCATCTTACTTGGGGAAGCTGACTGGCAACCTTGCCCTGAGTTCTGTGTGGAGGGCCCACCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR GCA 72 bp GTCGATGTCACTAGACTGGGGCTTGCCAGAAGCAATTaGCTAGCCAGCAGACTCTGTTGCCTGGGGTTCAGA +
Preference number: 3 (lower is better)
Translates to: VDVTRLGLARSN*LASRLCCLGFR
Trigger: TCTGAACCCCAGGCAACAGAGTCTGCTGGCTAGGCAATTGCTTCTGGCAAGCCCCAGTCTAGTGACATCGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CCA 72 bp CAAATCTCAAAGTCCAGAATGATGGGGGAAGGGAGTTaGAGGAGGAGGGAGAGGAGGAGCAGGAGGAAGAGG +
Preference number: 3 (lower is better)
Translates to: QISKSRMMGEGS*RRRERRSRRKR
Trigger: CCTCTTCCTCCTGCTCCTCCTCTCCCTCCTCCTCCAACTCCCTTCCCCCATCATTCTGGACTTTGAGATTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR GCA 72 bp CAGGGCAAGGTTGCCAGTCAGCTTCCCCAAGTAAGATaGTTCAGTCCAGGCAGCAGACAAGAAGCACTGAGA +
Preference number: 3 (lower is better)
Translates to: QGKVASQLPQVR*FSPGSRQEALR
Trigger: TCTCAGTGCTTCTTGTCTGCTGCCTGGACTGAAGCATCTTACTTGGGGAAGCTGACTGGCAACCTTGCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR GCA 72 bp CTTGCCAGAAGCAATTGCCTAGCCAGCAGACTCTGTTaGCTGGGGTTCAGAGTTGCAAGGAGAGGAGTGTCT +
Preference number: 3 (lower is better)
Translates to: LARSNCLASRLC*LGFRVARRGVS
Trigger: AGACACTCCTCTCCTTGCAACTCTGAACCCCAGGCAACAGAGTCTGCTGGCTAGGCAATTGCTTCTGGCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CCA 72 bp GAGAAGAGGGAAGCATATGGCCCTCGATTTGTCCTTTaGGTCACAGATGGTAGGAGAGCAAACGGAGGCAGC +
Preference number: 3 (lower is better)
Translates to: EKREAYGPRFVL*VTDGRRANGGS
Trigger: GCTGCCTCCGTTTGCTCTCCTACCATCTGTGACCCAAAGGACAAATCGAGGGCCATATGCTTCCCTCTTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR CAA 90 bp CAAACACAGTTTGAGTCGAAGCTGCTCCCAGATCCCCACAGGGACTTGTTTGAACAAGGTGCCGTCCAGTaGGGGAGTAGGCAGATGAAG +
Preference number: 3 (lower is better)
Translates to: QTQFESKLLPDPHRDLFEQGAVQ*GSRQMK
Trigger: CTTCATCTGCCTACTCCCCAACTGGACGGCACCTTG...TTCAAACAAGTCCCTGTGGGGATCTGGGAGCAGCTTCGACTCAAACTGTGTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR TCA 72 bp GGAAGCCAGTGGAGGTCTGCCCAGGTTACCAACAGCTaGTGCCCACCCATCCATTCTCTCAAATCTCAAAGT +
Preference number: 3 (lower is better)
Translates to: GSQWRSAQVTNS*CPPIHSLKSQS
Trigger: ACTTTGAGATTTGAGAGAATGGATGGGTGGGCATCAGCTGTTGGTAACCTGGGCAGACCTCCACTGGCTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR GCA 72 bp TCTTCCTTGGTGCTGCAATGTACTTGCAACTCTCTCTaGTCCCATTGGGTCCGGGTCTCATGTGGACCCTTA +
Preference number: 3 (lower is better)
Translates to: SSLVLQCTCNSL*SHWVRVSCGPL
Trigger: TAAGGGTCCACATGAGACCCGGACCCAATGGGAGCAGAGAGAGTTGCAAGTACATTGCAGCACCAAGGAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CCA 72 bp AAGTCTACCAGGGCAAAGGGCAAGTTCCCTGCTTGTTaGCCTCCTGCAATAGCTAGAGAAACCAGACACCTC +
Preference number: 3 (lower is better)
Translates to: KSTRAKGKFPAC*PPAIARETRHL
Trigger: GAGGTGTCTGGTTTCTCTAGCTATTGCAGGAGGCCAACAAGCAGGGAACTTGCCCTTTGCCCTGGTAGACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR GCA 72 bp CTTTCCTCACTTTCTTCCTTGGTGCTGCAATGTACTTaGAACTCTCTCTGCTCCCATTGGGTCCGGGTCTCA +
Preference number: 3 (lower is better)
Translates to: LSSLSSLVLQCT*NSLCSHWVRVS
Trigger: TGAGACCCGGACCCAATGGGAGCAGAGAGAGTTGCAAGTACATTGCAGCACCAAGGAAGAAAGTGAGGAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR CAA 90 bp GATGTCACTAGACTGGGGCTTGCCAGAAGCAATTGCCTAGCCAGCAGACTCTGTGATCCCCACAGGGACTaGTTTGAAGAAAAATGGTCA +
Preference number: 3 (lower is better)
Translates to: DVTRLGLARSNCLASRLCDPHRD*FEEKWS
Trigger: TGACCATTTTTCTTCAAACAAGTCCCTGTGGGGATC...ACAGAGTCTGCTGGCTAGGCAATTGCTTCTGGCAAGCCCCAGTCTAGTGACATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR CAA 90 bp AAGGAGAGGAGTGTCTTGGTAGAAATGCTGAAATTTGTCCAAGAACATAGAGCGTGGTGCCAGCCCTGGTaGGAGAGGACACGAGTCTCA +
Preference number: 3 (lower is better)
Translates to: KERSVLVEMLKFVQEHRAWCQPW*ERTRVS
Trigger: TGAGACTCGTGTCCTCTCCAACCAGGGCTGGCACCA...CGCTCTATGTTCTTGGACAAATTTCAGCATTTCTACCAAGACACTCCTCTCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR GCA 72 bp AGAACAACATGCAACATTCTCCCCACATCCTCGATCTaGAATCCCAGAAATAGGAGGCCCATGGTCAGGATG +
Preference number: 3 (lower is better)
Translates to: RTTCNILPTSSI*NPRNRRPMVRM
Trigger: CATCCTGACCATGGGCCTCCTATTTCTGGGATTGCAGATCGAGGATGTGGGGAGAATGTTGCATGTTGTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CCA 72 bp AATGAGGTGAACTGGTCTTTCCTCTTCCGGCGGCCATaGAAAGACCATAGCCTAAATCAAGACTCTCTTGGC +
Preference number: 3 (lower is better)
Translates to: NEVNWSFLFRRP*KDHSLNQDSLG
Trigger: GCCAAGAGAGTCTTGATTTAGGCTATGGTCTTTCCATGGCCGCCGGAAGAGGAAAGACCAGTTCACCTCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR CAA 90 bp TCCAGAAAGTACCTTAATCACCCACCTTCTCAGCTGATAATATTTCTTCCCACCAGCCAGCAGACTCTGTaGCCTGGGGTTCAGAGTTGC +
Preference number: 3 (lower is better)
Translates to: SRKYLNHPPSQLIIFLPTSQQTL*PGVQSC
Trigger: GCAACTCTGAACCCCAGGCAACAGAGTCTGCTGGCT...GGTGGGAAGAAATATTATCAGCTGAGAAGGTGGGTGATTAAGGTACTTTCTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR TCA 72 bp CTACCGAAAGTGTTCCAGCTGAGGGAAAGGAAGGGCTaGGGGAACAGAAAACTTATTCTGCCAGCAACTTTC +
Preference number: 3 (lower is better)
Translates to: LPKVFQLRERKG*GNRKLILPATF
Trigger: GAAAGTTGCTGGCAGAATAAGTTTTCTGTTCCCTCAGCCCTTCCTTTCCCTCAGCTGGAACACTTTCGGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR GCA 72 bp GGCTCTGGGAGGGCTAGAGATAGGATACAGATTAGATaGCAGTTATTGAGGGATGCCACAAAATCACTGGTG +
Preference number: 3 (lower is better)
Translates to: GSGRARDRIQIR*QLLRDATKSLV
Trigger: CACCAGTGATTTTGTGGCATCCCTCAATAACTGGCATCTAATCTGTATCCTATCTCTAGCCCTCCCAGAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR GCA 72 bp TGTGACTGTCTGAGGAGATGGATAGGTGTGAGTTTGTaGAGCGTGAACACTACAGTGAGAAGAGGGAAGCAT +
Preference number: 3 (lower is better)
Translates to: CDCLRRWIGVSL*SVNTTVRRGKH
Trigger: ATGCTTCCCTCTTCTCACTGTAGTGTTCACGCTGCACAAACTCACACCTATCCATCTCCTCAGACAGTCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR CAA 90 bp AAAGATGGGACAGAAAGGTTTGAAAGAACTAGAAAAGGTGCTGGCTTGAGAAAAGAACTCAGGGCAAGGTaGCCAGTCAGCTTCCCCAAG +
Preference number: 3 (lower is better)
Translates to: KDGTERFERTRKGAGLRKELRAR*PVSFPK
Trigger: CTTGGGGAAGCTGACTGGCAACCTTGCCCTGAGTTC...TTTTCTCAAGCCAGCACCTTTTCTAGTTCTTTCAAACCTTTCTGTCCCATCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR CAA 90 bp GAGTCTTGGTTTCTTTGGAGTAATTGGGTGCCGCCAAAAGAGTCGATGTCACTAAGAAGTCCTCTGGTCTaGGCTTCTTCTTGGCAAATG +
Preference number: 3 (lower is better)
Translates to: ESWFLWSNWVPPKESMSLRSPLV*ASSWQM
Trigger: CATTTGCCAAGAAGAAGCCAAGACCAGAGGACTTCT...TAGTGACATCGACTCTTTTGGCGGCACCCAATTACTCCAAAGAAACCAAGACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR TCA 72 bp CAGAAAGGTTTGAAAGAACTAGAAAAGGTGCTGGCTTaGGAAAATGAACAGACGGTAAGGGACAGGTGGGCC +
Preference number: 3 (lower is better)
Translates to: QKGLKELEKVLA*ENEQTVRDRWA
Trigger: GGCCCACCTGTCCCTTACCGTCTGTTCATTTTCTCAAGCCAGCACCTTTTCTAGTTCTTTCAAACCTTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR CAA 90 bp GAGTCTTGGTTTCTTTGGAGTAATTGGGTGCCGCCAAAAGAGTCGATGTCACTACCCACAGGGACTTGTTaGAAGAAAAATGGTCACTCT +
Preference number: 3 (lower is better)
Translates to: ESWFLWSNWVPPKESMSLPTGTC*KKNGHS
Trigger: AGAGTGACCATTTTTCTTCAAACAAGTCCCTGTGGG...TAGTGACATCGACTCTTTTGGCGGCACCCAATTACTCCAAAGAAACCAAGACTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR TCA 72 bp TTTGAAAGAACTAGAAAAGGTGCTGGCTTGAGAAAATaGACAGACGGTAAGGGACAGGTGGGCCCATGTATC +
Preference number: 3 (lower is better)
Translates to: FERTRKGAGLRK*TDGKGQVGPCI
Trigger: GATACATGGGCCCACCTGTCCCTTACCGTCTGTTCATTTTCTCAAGCCAGCACCTTTTCTAGTTCTTTCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR CAA 90 bp TCCAGAAAGTACCTTAATCACCCACCTTCTCAGCTGATAATATTTCTTCCCACCTCCTCACTTTCTTCCTaGGTGCTGCAATGTACTTGC +
Preference number: 3 (lower is better)
Translates to: SRKYLNHPPSQLIIFLPTSSLSS*VLQCTC
Trigger: GCAAGTACATTGCAGCACCAAGGAAGAAAGTGAGGA...GGTGGGAAGAAATATTATCAGCTGAGAAGGTGGGTGATTAAGGTACTTTCTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR GCA 72 bp CTTCCTTCTTTATCATCTTTCCCTAAGCAACCCTACTaGCAGGGTAGATCAAGGGGTTTTGATCTGGGTAAA +
Preference number: 3 (lower is better)
Translates to: LPSLSSFPKQPY*QGRSRGFDLGK
Trigger: TTTACCCAGATCAAAACCCCTTGATCTACCCTGGCAGTAGGGTTGCTTAGGGAAAGATGATAAAGAAGGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CCA 72 bp GAGAATGTAAATGTGACATGTGACTGTCTGAGGAGATaGATAGGTGTGAGTTTGTGCAGCGTGAACACTACA +
Preference number: 3 (lower is better)
Translates to: ENVNVTCDCLRR*IGVSLCSVNTT
Trigger: TGTAGTGTTCACGCTGCACAAACTCACACCTATCCATCTCCTCAGACAGTCACATGTCACATTTACATTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR CAA 90 bp GAAACGGCTGGTTTCTTCCTTCTTTATCATCTTTCCCTAAGCAACCCTACTGCCATTAGATGCCAGTTATaGAGGGATGCCACAAAATCA +
Preference number: 3 (lower is better)
Translates to: ETAGFFLLYHLSLSNPTAIRCQL*RDATKS
Trigger: TGATTTTGTGGCATCCCTCAATAACTGGCATCTAAT...GGCAGTAGGGTTGCTTAGGGAAAGATGATAAAGAAGGAAGAAACCAGCCGTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR GCA 72 bp TCTTTTTCTTTGACTACCTCACCCATCACGCCATATTaGATCCCTTTGCCTAAAATGAAGCCAAGTTTGGGA +
Preference number: 3 (lower is better)
Translates to: SFSLTTSPITPY*IPLPKMKPSLG
Trigger: TCCCAAACTTGGCTTCATTTTAGGCAAAGGGATGCAATATGGCGTGATGGGTGAGGTAGTCAAAGAAAAAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR TCA 72 bp GTAGTTGATGGGCCAGTTGCTAACTTGGGCCCCAAATaGGAACACTTTATCCGTCACAGTTCAAATAAATTA +
Preference number: 3 (lower is better)
Translates to: VVDGPVANLGPK*EHFIRHSSNKL
Trigger: TAATTTATTTGAACTGTGACGGATAAAGTGTTCTCATTTGGGGCCCAAGTTAGCAACTGGCCCATCAACTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR-3UTR CAA 90 bp GAGTTGCAAGGAGAGGAGTGTCTTGGTAGAAATGCTGAAATTTGTCCAAGAACAAAAATGGTCACTCTTTaGTTCTTTGTACCTCTGGAG +
Preference number: 3 (lower is better)
Translates to: ELQGEECLGRNAEICPRTKMVTL*FFVPLE
Trigger: CTCCAGAGGTACAAAGAACAAAAGAGTGACCATTTT...TGTTCTTGGACAAATTTCAGCATTTCTACCAAGACACTCCTCTCCTTGCAACTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR CCA 90 bp TTGAGGAAGGCAAGGGGGTTGGAGAGGGTCGATCATGTCATGAGGACAGGTTGGCCCTGGCCCTGGTCCTaGCCTTGTCCGTGCCACGGG +
Preference number: 4 (lower is better)
Translates to: LRKARGLERVDHVMRTGWPWPWS*PCPCHG
Trigger: CCCGTGGCACGGACAAGGCCAGGACCAGGGCCAGGG...CCAACCTGTCCTCATGACATGATCGACCCTCTCCAACCCCCTTGCCTTCCTCAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR GCA 90 bp GCCCAGTTGGTACCCTCTGGCCTTCGGGCCCAAAGAGGGATGACAGGAGGAATCGCACACAGACATGGCTaGAGTCAGGCTGGATGGCCG +
Preference number: 4 (lower is better)
Translates to: AQLVPSGLRAQRGMTGGIAHRHG*SQAGWP
Trigger: CGGCCATCCAGCCTGACTGCAGCCATGTCTGTGTGC...GATTCCTCCTGTCATCCCTCTTTGGGCCCGAAGGCCAGAGGGTACCAACTGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR GCA 90 bp GATGTCACTAGACTGGGGCTTGCCAGAAGCAATTGCCTAGCCAGCAGACTCTGTCCCGGCGCTGCACACTaGCTCCTCTCCATGGCACAC +
Preference number: 4 (lower is better)
Translates to: DVTRLGLARSNCLASRLCPGAAH*LLSMAH
Trigger: GTGTGCCATGGAGAGGAGGCAGTGTGCAGCGCCGGG...ACAGAGTCTGCTGGCTAGGCAATTGCTTCTGGCAAGCCCCAGTCTAGTGACATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR CCA 90 bp AAGAGGGAAGCATATGGCCCTCGATTTGTCCTTTGGGTCACAGATGGTAGGAGACTGCACTCTCCTGGCTaGGGCCCTGGCCCTGGTCCT +
Preference number: 4 (lower is better)
Translates to: KREAYGPRFVLWVTDGRRLHSPG*GPGPGP
Trigger: AGGACCAGGGCCAGGGCCCCAGCCAGGAGAGTGCAG...TCTCCTACCATCTGTGACCCAAAGGACAAATCGAGGGCCATATGCTTCCCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR CCA 90 bp CCAGAAGTCCTCTGGTCTTGGCTTCTTCTTGGCAAATGTTCGCAGCACTGTTTATCCGCTGCACTCTCCTaGCTGGGGCCCTGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: PEVLWSWLLLGKCSQHCLSAALS*LGPWPW
Trigger: CCAGGGCCAGGGCCCCAGCCAGGAGAGTGCAGCGGA...TAAACAGTGCTGCGAACATTTGCCAAGAAGAAGCCAAGACCAGAGGACTTCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CAA 72 bp GAACAGACGGTAAGGGACAGGTGGGCCCATGTATCCTaGTCCCGGGACTCCTGGGCATCTCATGTCACGATG +
Preference number: 4 (lower is better)
Translates to: EQTVRDRWAHVS*SRDSWASHVTM
Trigger: CATCGTGACATGAGATGCCCAGGAGTCCCGGGACAAGGATACATGGGCCCACCTGTCCCTTACCGTCTGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR TCA 90 bp GATGTCACTAGACTGGGGCTTGCCAGAAGCAATTGCCTAGCCAGCAGACTCTGTGGAAGCGCAGGTAGATaGCCAGGGCAGCCATTGTGT +
Preference number: 4 (lower is better)
Translates to: DVTRLGLARSNCLASRLCGSAGR*PGQPLC
Trigger: ACACAATGGCTGCCCTGGTCATCTACCTGCGCTTCC...ACAGAGTCTGCTGGCTAGGCAATTGCTTCTGGCAAGCCCCAGTCTAGTGACATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CAA 72 bp GCTTGCCAGAAGCAATTGCCTAGCCAGCAGACTCTGTaGCCTGGGGTTCAGAGTTGCAAGGAGAGGAGTGTC +
Preference number: 4 (lower is better)
Translates to: ACQKQLPSQQTL*PGVQSCKERSV
Trigger: GACACTCCTCTCCTTGCAACTCTGAACCCCAGGCAACAGAGTCTGCTGGCTAGGCAATTGCTTCTGGCAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CAA 72 bp TCAAATCTCAAAGTCCAGAATGATGGGGGAAGGGAGTaGGAGGAGGAGGGAGAGGAGGAGCAGGAGGAAGAG +
Preference number: 4 (lower is better)
Translates to: SNLKVQNDGGRE*EEEGEEEQEEE
Trigger: CTCTTCCTCCTGCTCCTCCTCTCCCTCCTCCTCCAACTCCCTTCCCCCATCATTCTGGACTTTGAGATTTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CAA 72 bp TTTGATCTGGGTAAAAGGCAGATGGCATTTGCCCAGTaGGTACCCTCTGGCCTTCGGGCCCAAAGAGGGATG +
Preference number: 4 (lower is better)
Translates to: FDLGKRQMAFAQ*VPSGLRAQRGM
Trigger: CATCCCTCTTTGGGCCCGAAGGCCAGAGGGTACCAACTGGGCAAATGCCATCTGCCTTTTACCCAGATCAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR CCA 90 bp TTGAGGAAGGCAAGGGGGTTGGAGAGGGTCGATCATGTCATGAGGACAGGTTGGTGGAGCTCACGTCCTTaGCTTCGTTGTTGCAGAGAA +
Preference number: 4 (lower is better)
Translates to: LRKARGLERVDHVMRTGWWSSRP*LRCCRE
Trigger: TTCTCTGCAACAACGAAGCCAAGGACGTGAGCTCCA...CCAACCTGTCCTCATGACATGATCGACCCTCTCCAACCCCCTTGCCTTCCTCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CAA 72 bp ATCTTGATGTGGGTAGCATTGAGGAAGGCAAGGGGGTaGGAGAGGGTCGATCATGTCATGAGGACAGGTTGG +
Preference number: 4 (lower is better)
Translates to: ILMWVALRKARG*ERVDHVMRTGW
Trigger: CCAACCTGTCCTCATGACATGATCGACCCTCTCCAACCCCCTTGCCTTCCTCAATGCTACCCACATCAAGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CAA 72 bp AAGGATTCTGAGCCCTGGGCCCCCAAGAAATACATCTaGATGTGGGTAGCATTGAGGAAGGCAAGGGGGTTG +
Preference number: 4 (lower is better)
Translates to: KDSEPWAPKKYI*MWVALRKARGL
Trigger: CAACCCCCTTGCCTTCCTCAATGCTACCCACATCAAGATGTATTTCTTGGGGGCCCAGGGCTCAGAATCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR GCA 90 bp CAGTTTGAGTCGAAGCTGCTCCCAGATCCCCACAGGGACTTGTTTGAAGAAAAATTACTGCTTCTCCACTaGCCCCTGCTCCGCTGCACT +
Preference number: 4 (lower is better)
Translates to: QFESKLLPDPHRDLFEEKLLLLH*PLLRCT
Trigger: AGTGCAGCGGAGCAGGGGGCAGTGGAGAAGCAGTAA...TTTTTCTTCAAACAAGTCCCTGTGGGGATCTGGGAGCAGCTTCGACTCAAACTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR TCA 90 bp AAGAGGGAAGCATATGGCCCTCGATTTGTCCTTTGGGTCACAGATGGTAGGAGAGCCACGGGGTCTCTTTaGACACAAACCAACAGTTTC +
Preference number: 4 (lower is better)
Translates to: KREAYGPRFVLWVTDGRRATGSL*TQTNSF
Trigger: GAAACTGTTGGTTTGTGTTCAAAGAGACCCCGTGGC...TCTCCTACCATCTGTGACCCAAAGGACAAATCGAGGGCCATATGCTTCCCTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CAA 72 bp ACTACAGTGAGAAGAGGGAAGCATATGGCCCTCGATTaGTCCTTTGGGTCACAGATGGTAGGAGAGCAAACG +
Preference number: 4 (lower is better)
Translates to: TTVRRGKHMALD*SFGSQMVGEQT
Trigger: CGTTTGCTCTCCTACCATCTGTGACCCAAAGGACAAATCGAGGGCCATATGCTTCCCTCTTCTCACTGTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR GCA 90 bp AAAGATGGGACAGAAAGGTTTGAAAGAACTAGAAAAGGTGCTGGCTTGAGAAAACGTCAGTCAAGCCCTTaGCCCAGGCAGCGGCAGCAA +
Preference number: 4 (lower is better)
Translates to: KDGTERFERTRKGAGLRKRQSSP*PRQRQQ
Trigger: TTGCTGCCGCTGCCTGGGGCAAGGGCTTGACTGACG...TTTTCTCAAGCCAGCACCTTTTCTAGTTCTTTCAAACCTTTCTGTCCCATCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CAA 72 bp AGGGCTAGAGATAGGATACAGATTAGATGCCAGTTATaGAGGGATGCCACAAAATCACTGGTGGGCCCTCCA +
Preference number: 4 (lower is better)
Translates to: RARDRIQIRCQL*RDATKSLVGPP
Trigger: TGGAGGGCCCACCAGTGATTTTGTGGCATCCCTCAATAACTGGCATCTAATCTGTATCCTATCTCTAGCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CAA 72 bp ACATGTGACTGTCTGAGGAGATGGATAGGTGTGAGTTaGTGCAGCGTGAACACTACAGTGAGAAGAGGGAAG +
Preference number: 4 (lower is better)
Translates to: TCDCLRRWIGVS*CSVNTTVRRGK
Trigger: CTTCCCTCTTCTCACTGTAGTGTTCACGCTGCACAAACTCACACCTATCCATCTCCTCAGACAGTCACATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR TCA 90 bp GAGTCTTGGTTTCTTTGGAGTAATTGGGTGCCGCCAAAAGAGTCGATGTCACTACAGAGAAGTCTCCCATaGGGTTCATGGTTTTGGAGG +
Preference number: 4 (lower is better)
Translates to: ESWFLWSNWVPPKESMSLQRSLP*GSWFWR
Trigger: CCTCCAAAACCATGAACCTCATGGGAGACTTCTCTG...TAGTGACATCGACTCTTTTGGCGGCACCCAATTACTCCAAAGAAACCAAGACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR CCA 90 bp TCCAGAAAGTACCTTAATCACCCACCTTCTCAGCTGATAATATTTCTTCCCACCACTGCCTCCTCTCCATaGCACACAGACATGGCTGCA +
Preference number: 4 (lower is better)
Translates to: SRKYLNHPPSQLIIFLPTTASSP*HTDMAA
Trigger: TGCAGCCATGTCTGTGTGCCATGGAGAGGAGGCAGT...GGTGGGAAGAAATATTATCAGCTGAGAAGGTGGGTGATTAAGGTACTTTCTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR TCA 90 bp AAGGAGAGGAGTGTCTTGGTAGAAATGCTGAAATTTGTCCAAGAACATAGAGCGTTGGAGGTGGAGTCCTaGTCACAGAGAGGCATCTCA +
Preference number: 4 (lower is better)
Translates to: KERSVLVEMLKFVQEHRALEVES*SQRGIS
Trigger: TGAGATGCCTCTCTGTGATCAGGACTCCACCTCCAA...CGCTCTATGTTCTTGGACAAATTTCAGCATTTCTACCAAGACACTCCTCTCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR GCA 90 bp AAAGATGGGACAGAAAGGTTTGAAAGAACTAGAAAAGGTGCTGGCTTGAGAAAACCTTGGCTTCGTTGTTaGAGAGAACCAAGGCTCCCG +
Preference number: 4 (lower is better)
Translates to: KDGTERFERTRKGAGLRKPWLRC*REPRLP
Trigger: CGGGAGCCTTGGTTCTCTGCAACAACGAAGCCAAGG...TTTTCTCAAGCCAGCACCTTTTCTAGTTCTTTCAAACCTTTCTGTCCCATCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CAA 72 bp AGCAAACGGAGGCAGCATTGTGGAAGCCACTGTCTTTaGCCTTTTGAGTTTGGTCCAAGTTTGCTAATGAGT +
Preference number: 4 (lower is better)
Translates to: SKRRQHCGSHCL*PFEFGPSLLMS
Trigger: ACTCATTAGCAAACTTGGACCAAACTCAAAAGGCAAAAGACAGTGGCTTCCACAATGCTGCCTCCGTTTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR CCA 90 bp AATTGGGAAACGGCTGGTTTCTTCCTTCTTTATCATCTTTCCCTAAGCAACCCTAGAGGCATCTCATACTaGACCTGGTACAACCTGAAG +
Preference number: 4 (lower is better)
Translates to: NWETAGFFLLYHLSLSNPRGISY*TWYNLK
Trigger: CTTCAGGTTGTACCAGGTCCAGTATGAGATGCCTCT...AGGGTTGCTTAGGGAAAGATGATAAAGAAGGAAGAAACCAGCCGTTTCCCAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CAA 72 bp TTGACTACCTCACCCATCACGCCATATTGCATCCCTTaGCCTAAAATGAAGCCAAGTTTGGGAGCAATTAAG +
Preference number: 4 (lower is better)
Translates to: LTTSPITPYCIP*PKMKPSLGAIK
Trigger: CTTAATTGCTCCCAAACTTGGCTTCATTTTAGGCAAAGGGATGCAATATGGCGTGATGGGTGAGGTAGTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
3UTR CAA 72 bp CCATATTGCATCCCTTTGCCTAAAATGAAGCCAAGTTaGGGAGCAATTAAGTCAAGGTCTGTGACTTTCTGC +
Preference number: 4 (lower is better)
Translates to: PYCIPLPKMKPS*GAIKSRSVTFC
Trigger: GCAGAAAGTCACAGACCTTGACTTAATTGCTCCCAAACTTGGCTTCATTTTAGGCAAAGGGATGCAATATGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS TCA 90 bp ACACAGACATGGCTGCAGTCAGGCTGGATGGCCGGGTGGCCCCTTTaGCGTCAGTCAAGCCCTTGCCCCAGGCAGCGGCAGCAACCAGCC +
Preference number: 5 (lower is better)
Translates to: TQTWLQSGWMAGWPL*RQSSPCPRQRQQPA
Trigger: GGCTGGTTGCTGCCGCTGCCTGGGGCAAGGGCTTGACTGACGTCAAAGGGGCCACCCGGCCATCCAGCCTGACTGCAGCCATGTCTGTGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS GCA 90 bp CCCGGCGCTGCACACTGCCTCCTCTCCATGGCACACAGACATGGCTaGAGTCAGGCTGGATGGCCGGGTGGCCCCTTTGACGTCAGTCAA +
Preference number: 5 (lower is better)
Translates to: PGAAHCLLSMAHRHG*SQAGWPGGPFDVSQ
Trigger: TTGACTGACGTCAAAGGGGCCACCCGGCCATCCAGCCTGACTGCAGCCATGTCTGTGTGCCATGGAGAGGAGGCAGTGTGCAGCGCCGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS CCA 90 bp TGCCTCCTCTCCATGGCACACAGACATGGCTGCAGTCAGGCTGGATaGCCGGGTGGCCCCTTTGACGTCAGTCAAGCCCTTGCCCCAGGC +
Preference number: 5 (lower is better)
Translates to: CLLSMAHRHGCSQAG*PGGPFDVSQALAPG
Trigger: GCCTGGGGCAAGGGCTTGACTGACGTCAAAGGGGCCACCCGGCCATCCAGCCTGACTGCAGCCATGTCTGTGTGCCATGGAGAGGAGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR CAA 90 bp AGAAGAGGGAAGCATATGGCCCTCGATTTGTCCTTTGGGTCACAGATGGTAGGATGCTGGCGCGGAGACTaGTCCGAGGTGCGGCCGGGG +
Preference number: 5 (lower is better)
Translates to: RRGKHMALDLSFGSQMVGCWRGD*SEVRPG
Trigger: CCCCGGCCGCACCTCGGACAAGTCTCCGCGCCAGCA...TCCTACCATCTGTGACCCAAAGGACAAATCGAGGGCCATATGCTTCCCTCTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR CAA 90 bp AGAAGAGGGAAGCATATGGCCCTCGATTTGTCCTTTGGGTCACAGATGGTAGGAACGTCAGTCAAGCCCTaGCCCCAGGCAGCGGCAGCA +
Preference number: 5 (lower is better)
Translates to: RRGKHMALDLSFGSQMVGTSVKP*PQAAAA
Trigger: TGCTGCCGCTGCCTGGGGCAAGGGCTTGACTGACGT...TCCTACCATCTGTGACCCAAAGGACAAATCGAGGGCCATATGCTTCCCTCTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS TCA 90 bp TCAAGCCCTTGCCCCAGGCAGCGGCAGCAACCAGCCAAAAGAAGGTaGAAGAGACAGTCACACAGAAATCCACCAACGGGAAGCGTTTGT +
Preference number: 5 (lower is better)
Translates to: SSPCPRQRQQPAKRR*KRQSHRNPPTGSVC
Trigger: ACAAACGCTTCCCGTTGGTGGATTTCTGTGTGACTGTCTCTTTCACCTTCTTTTGGCTGGTTGCTGCCGCTGCCTGGGGCAAGGGCTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR CAA 90 bp GCTTCCCCAAGTAAGATGCTTCAGTCCAGGCAGCAGACAAGAAGCACTGAGATCACGTCCTTGGCTTCGTaGTTGCAGAGAACCAAGGCT +
Preference number: 5 (lower is better)
Translates to: ASPSKMLQSRQQTRSTEITSLAS*LQRTKA
Trigger: AGCCTTGGTTCTCTGCAACAACGAAGCCAAGGACGT...GATCTCAGTGCTTCTTGTCTGCTGCCTGGACTGAAGCATCTTACTTGGGGAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR CAA 90 bp AAAGATGGGACAGAAAGGTTTGAAAGAACTAGAAAAGGTGCTGGCTTGAGAAAAGCCCTGGTCCTGGCCTaGTCCGTGCCACGGGGTCTC +
Preference number: 5 (lower is better)
Translates to: KDGTERFERTRKGAGLRKALVLA*SVPRGL
Trigger: GAGACCCCGTGGCACGGACAAGGCCAGGACCAGGGC...TTTTCTCAAGCCAGCACCTTTTCTAGTTCTTTCAAACCTTTCTGTCCCATCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS TCA 90 bp GCAGAGAAGTCTCCCATGAGGTTCATGGTTTTGGAGGTGGAGTCCTaGTCACAGAGAGGCATCTCATACTGGACCTGGTACAACCTGAAG +
Preference number: 5 (lower is better)
Translates to: AEKSPMRFMVLEVES*SQRGISYWTWYNLK
Trigger: CTTCAGGTTGTACCAGGTCCAGTATGAGATGCCTCTCTGTGATCAGGACTCCACCTCCAAAACCATGAACCTCATGGGAGACTTCTCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR CAA 90 bp CAGTTTGAGTCGAAGCTGCTCCCAGATCCCCACAGGGACTTGTTTGAAGAAAAAATGGAGCTCACGTCCTaGGCTTCGTTGTTGCAGAGA +
Preference number: 5 (lower is better)
Translates to: QFESKLLPDPHRDLFEEKMELTS*ASLLQR
Trigger: TCTCTGCAACAACGAAGCCAAGGACGTGAGCTCCAT...TTTTTCTTCAAACAAGTCCCTGTGGGGATCTGGGAGCAGCTTCGACTCAAACTG
50% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR CAA 90 bp TCCAGAAAGTACCTTAATCACCCACCTTCTCAGCTGATAATATTTCTTCCCACCTCCTTGGCTTCGTTGTaGCAGAGAACCAAGGCTCCC +
Preference number: 5 (lower is better)
Translates to: SRKYLNHPPSQLIIFLPTSLASL*QRTKAP
Trigger: GGGAGCCTTGGTTCTCTGCAACAACGAAGCCAAGGA...GGTGGGAAGAAATATTATCAGCTGAGAAGGTGGGTGATTAAGGTACTTTCTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS-3UTR CAA 90 bp AATTGGGAAACGGCTGGTTTCTTCCTTCTTTATCATCTTTCCCTAAGCAACCCTTGCCACGGGGTCTCTTaGAACACAAACCAACAGTTT +
Preference number: 5 (lower is better)
Translates to: NWETAGFFLLYHLSLSNPCHGVS*NTNQQF
Trigger: AAACTGTTGGTTTGTGTTCAAAGAGACCCCGTGGCA...AGGGTTGCTTAGGGAAAGATGATAAAGAAGGAAGAAACCAGCCGTTTCCCAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS CAA 72 bp CCCAGGAGCAGGCGGTCCACCTGCTGGCGCGGAGACTaGTCCGAGGTGCGGCCGGGGCTCTCCGTCGAGGAC +
Preference number: 6 (lower is better)
Translates to: PRSRRSTCWRGD*SEVRPGLSVED
Trigger: GTCCTCGACGGAGAGCCCCGGCCGCACCTCGGACAAGTCTCCGCGCCAGCAGGTGGACCGCCTGCTCCTGGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS TCA 72 bp TGGCTGCAGTCAGGCTGGATGGCCGGGTGGCCCCTTTaGCGTCAGTCAAGCCCTTGCCCCAGGCAGCGGCAG +
Preference number: 6 (lower is better)
Translates to: WLQSGWMAGWPL*RQSSPCPRQRQ
Trigger: CTGCCGCTGCCTGGGGCAAGGGCTTGACTGACGTCAAAGGGGCCACCCGGCCATCCAGCCTGACTGCAGCCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS CAA 72 bp ATGGCTGCAGTCAGGCTGGATGGCCGGGTGGCCCCTTaGACGTCAGTCAAGCCCTTGCCCCAGGCAGCGGCA +
Preference number: 6 (lower is better)
Translates to: MAAVRLDGRVAP*TSVKPLPQAAA
Trigger: TGCCGCTGCCTGGGGCAAGGGCTTGACTGACGTCAAAGGGGCCACCCGGCCATCCAGCCTGACTGCAGCCAT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS CAA 90 bp CACACAGACATGGCTGCAGTCAGGCTGGATGGCCGGGTGGCCCCTTaGACGTCAGTCAAGCCCTTGCCCCAGGCAGCGGCAGCAACCAGC +
Preference number: 6 (lower is better)
Translates to: HTDMAAVRLDGRVAP*TSVKPLPQAAAATS
Trigger: GCTGGTTGCTGCCGCTGCCTGGGGCAAGGGCTTGACTGACGTCAAAGGGGCCACCCGGCCATCCAGCCTGACTGCAGCCATGTCTGTGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS GCA 72 bp GCACACTGCCTCCTCTCCATGGCACACAGACATGGCTaGAGTCAGGCTGGATGGCCGGGTGGCCCCTTTGAC +
Preference number: 6 (lower is better)
Translates to: AHCLLSMAHRHG*SQAGWPGGPFD
Trigger: GTCAAAGGGGCCACCCGGCCATCCAGCCTGACTGCAGCCATGTCTGTGTGCCATGGAGAGGAGGCAGTGTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS TCA 72 bp CCTGGTCCTGGCCTTGTCCGTGCCACGGGGTCTCTTTaGACACAAACCAACAGTTTCCAGCCCACAGGAAGA +
Preference number: 6 (lower is better)
Translates to: PGPGLVRATGSL*TQTNSFQPTGR
Trigger: TCTTCCTGTGGGCTGGAAACTGTTGGTTTGTGTTCAAAGAGACCCCGTGGCACGGACAAGGCCAGGACCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS CAA 72 bp AACAAAACAATGATGGAGCTCACGTCCTTGGCTTCGTaGTTGCAGAGAACCAAGGCTCCCGTCTCCCCGCTG +
Preference number: 6 (lower is better)
Translates to: NKTMMELTSLAS*LQRTKAPVSPL
Trigger: CAGCGGGGAGACGGGAGCCTTGGTTCTCTGCAACAACGAAGCCAAGGACGTGAGCTCCATCATTGTTTTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4
CDS TCA 72 bp TCTCCCATGAGGTTCATGGTTTTGGAGGTGGAGTCCTaGTCACAGAGAGGCATCTCATACTGGACCTGGTAC +
Preference number: 6 (lower is better)
Translates to: SPMRFMVLEVES*SQRGISYWTWY
Trigger: GTACCAGGTCCAGTATGAGATGCCTCTCTGTGATCAGGACTCCACCTCCAAAACCATGAACCTCATGGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141387.4