Pregenerated sensors for SYPL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020570Ensembl transcript IDs: ENSMUST00000020885.13, ENSMUST00000076698.13, ENSMUST00000122861.8
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGGTCAGCCTCAACAGCAACCACAAACAGGCTTTAAAACAAACATaGCGCTTCAAACTCAGAGCAGTGACGAGTGGCCCGGCAGCATCA | + |
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Preference number: 1 (lower is better) Translates to: EVSLNSNHKQALKQT*RFKLRAVTSGPAAS Trigger: TGATGCTGCCGGGCCACTCGTCACTGCTCTGAGTTTGAAGCGTCATGTTTGTTTTAAAGCCTGTTTGTGGTTGCTGTTGAGGCTGACCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| 3UTR TCA 90 bp | CCCCAAGCAGGCAAGGATGATCTTAAACTATGGAGTGCTGAGATTTaGGGCTTGGGCTGCCATCGTTGGCTTATGTATGCAGTAGTGCAG | + |
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Preference number: 1 (lower is better) Translates to: PQAGKDDLKLWSAEI*GLGCHRWLMYAVVQ Trigger: CTGCACTACTGCATACATAAGCCAACGATGGCAGCCCAAGCCTCAAATCTCAGCACTCCATAGTTTAAGATCATCCTTGCCTGCTTGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| 3UTR TCA 90 bp | CTGAATCCTGTACAACAAAAAGTCAGGAGCAGAAAGCATGTATTCTaGGCACACACAAATGTGTGTACACACAGCACACACACAATACAG | + |
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Preference number: 1 (lower is better) Translates to: LNPVQQKVRSRKHVF*AHTNVCTHSTHTIQ Trigger: CTGTATTGTGTGTGTGCTGTGTGTACACACATTTGTGTGTGCTCAGAATACATGCTTTCTGCTCCTGACTTTTTGTTGTACAGGATTCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| 3UTR-3UTR TCA 90 bp | AGAGGAGCTGTAACTAAACTAAAGGGAGGTCAGCCTCAACAGCAACCACAAACAAGTGCTCCTAACCCCTaGGCCATCTCTCCAGTCCAA | + |
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Preference number: 2 (lower is better) Translates to: RGAVTKLKGGQPQQQPQTSAPNP*AISPVQ Trigger: TTGGACTGGAGAGATGGCTCAGGGGTTAGGAGCACT...TGTTTGTGGTTGCTGTTGAGGCTGACCTCCCTTTAGTTTAGTTACAGCTCCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| 3UTR-3UTR CCA 90 bp | AGAGGAGCTGTAACTAAACTAAAGGGAGGTCAGCCTCAACAGCAACCACAAACACTGAGATTTGAGGCTTaGGCTGCCATCGTTGGCTTA | + |
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Preference number: 2 (lower is better) Translates to: RGAVTKLKGGQPQQQPQTLRFEA*AAIVGL Trigger: TAAGCCAACGATGGCAGCCCAAGCCTCAAATCTCAG...TGTTTGTGGTTGCTGTTGAGGCTGACCTCCCTTTAGTTTAGTTACAGCTCCTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| 3UTR-3UTR TCA 90 bp | TCACTGATTGATATAGCCCAGGCTAGCCTTGAACTCCCCAAGCAGGCAAGGATGAGAAAGCATGTATTCTaGGCACACACAAATGTGTGT | + |
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Preference number: 2 (lower is better) Translates to: SLIDIAQASLELPKQARMRKHVF*AHTNVC Trigger: ACACACATTTGTGTGTGCTCAGAATACATGCTTTCT...CATCCTTGCCTGCTTGGGGAGTTCAAGGCTAGCCTGGGCTATATCAATCAGTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| 3UTR-3UTR TCA 90 bp | TCACTGATTGATATAGCCCAGGCTAGCCTTGAACTCCCCAAGCAGGCAAGGATGGTAGGACTAGGAATCTaGATCCTGTACAACAAAAAG | + |
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Preference number: 2 (lower is better) Translates to: SLIDIAQASLELPKQARMVGLGI*ILYNKK Trigger: CTTTTTGTTGTACAGGATTCAGATTCCTAGTCCTAC...CATCCTTGCCTGCTTGGGGAGTTCAAGGCTAGCCTGGGCTATATCAATCAGTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| 3UTR-3UTR GCA 90 bp | TCACTGATTGATATAGCCCAGGCTAGCCTTGAACTCCCCAAGCAGGCAAGGATGTGTAATTCTATCTCCTaGTTTGAAAAGAGGTTCCAT | + |
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Preference number: 2 (lower is better) Translates to: SLIDIAQASLELPKQARMCNSIS*FEKRFH Trigger: ATGGAACCTCTTTTCAAAGCAGGAGATAGAATTACA...CATCCTTGCCTGCTTGGGGAGTTCAAGGCTAGCCTGGGCTATATCAATCAGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| 3UTR-3UTR TCA 90 bp | AAATGTGTGTACACACAGCACACACACAATACAGCTTGCTTAGGTTCCTTTATGGATAGTAAACAAGCCTaGTGGAGAACGCCTACGTGT | + |
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Preference number: 2 (lower is better) Translates to: KCVYTQHTHNTACLGSFMDSKQA*WRTPTC Trigger: ACACGTAGGCGTTCTCCATCAGGCTTGTTTACTATC...CATAAAGGAACCTAAGCAAGCTGTATTGTGTGTGTGCTGTGTGTACACACATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| 3UTR-3UTR TCA 90 bp | AGAGGAGCTGTAACTAAACTAAAGGGAGGTCAGCCTCAACAGCAACCACAAACATTCTATCTCCTGCTTTaGAAAGAGGTTCCATTTTGC | + |
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Preference number: 2 (lower is better) Translates to: RGAVTKLKGGQPQQQPQTFYLLL*KEVPFC Trigger: GCAAAATGGAACCTCTTTTCAAAGCAGGAGATAGAA...TGTTTGTGGTTGCTGTTGAGGCTGACCTCCCTTTAGTTTAGTTACAGCTCCTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| 3UTR-3UTR TCA 90 bp | AATAAATGCCATTCTTGTCCAAGCAGAGTCAAACAAGGTTCATATGAACATTCTTGGAGTGCTGAGATTTaGGGCTTGGGCTGCCATCGT | + |
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Preference number: 2 (lower is better) Translates to: NKCHSCPSRVKQGSYEHSWSAEI*GLGCHR Trigger: ACGATGGCAGCCCAAGCCTCAAATCTCAGCACTCCA...AGAATGTTCATATGAACCTTGTTTGACTCTGCTTGGACAAGAATGGCATTTATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| 3UTR-3UTR TCA 90 bp | CTGCAGCTTGTCTTCTGGGAAGTTAAAGCTTATCACTTCTGTCCTAGAAATTGCAGCAGGAGCCCTTTCTaGGTTTACTCTCATTTCAAT | + |
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Preference number: 2 (lower is better) Translates to: LQLVFWEVKAYHFCPRNCSRSPF*VYSHFN Trigger: ATTGAAATGAGAGTAAACTCAGAAAGGGCTCCTGCT...GCAATTTCTAGGACAGAAGTGATAAGCTTTAACTTCCCAGAAGACAAGCTGCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| 3UTR-3UTR CCA 90 bp | AAAAAGTCAGGAGCAGAAAGCATGTATTCTGAGCACACACAAATGTGTGTACACTGCTTTTCAAGGTGTTaGCAACAAGGCATGCTAGAG | + |
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Preference number: 2 (lower is better) Translates to: KKSGAESMYSEHTQMCVHCFSRC*QQGMLE Trigger: CTCTAGCATGCCTTGTTGCCAACACCTTGAAAAGCA...GTGTACACACATTTGTGTGTGCTCAGAATACATGCTTTCTGCTCCTGACTTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| 3UTR-3UTR CCA 90 bp | AATAAATGCCATTCTTGTCCAAGCAGAGTCAAACAAGGTTCATATGAACATTCTTGCTTTTCAAGGTGTTaGCAACAAGGCATGCTAGAG | + |
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Preference number: 2 (lower is better) Translates to: NKCHSCPSRVKQGSYEHSCFSRC*QQGMLE Trigger: CTCTAGCATGCCTTGTTGCCAACACCTTGAAAAGCA...AGAATGTTCATATGAACCTTGTTTGACTCTGCTTGGACAAGAATGGCATTTATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| 3UTR CAA 90 bp | ATGGATATACCCATGCAGCACAAGTGCAAAGTTACCTCTACACATTaGTACAATTTTCAAACCCTCGCTTCTAAGACAATTTTAGTACAC | + |
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Preference number: 2 (lower is better) Translates to: MDIPMQHKCKVTSTH*YNFQTLASKTILVH Trigger: GTGTACTAAAATTGTCTTAGAAGCGAGGGTTTGAAAATTGTACAAATGTGTAGAGGTAACTTTGCACTTGTGCTGCATGGGTATATCCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| 3UTR-3UTR TCA 90 bp | AATAAATGCCATTCTTGTCCAAGCAGAGTCAAACAAGGTTCATATGAACATTCTATGGAGAACCTGTGCTaGAGACATTTCAAAACCTCT | + |
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Preference number: 2 (lower is better) Translates to: NKCHSCPSRVKQGSYEHSMENLC*RHFKTS Trigger: AGAGGTTTTGAAATGTCTTCAGCACAGGTTCTCCAT...AGAATGTTCATATGAACCTTGTTTGACTCTGCTTGGACAAGAATGGCATTTATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| 3UTR-3UTR TCA 90 bp | AATAAATGCCATTCTTGTCCAAGCAGAGTCAAACAAGGTTCATATGAACATTCTTATGACAAAATCCAGTaGAAATACAAGCCACAGATG | + |
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Preference number: 2 (lower is better) Translates to: NKCHSCPSRVKQGSYEHSYDKIQ*KYKPQM Trigger: CATCTGTGGCTTGTATTTTCACTGGATTTTGTCATA...AGAATGTTCATATGAACCTTGTTTGACTCTGCTTGGACAAGAATGGCATTTATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| 3UTR-3UTR GCA 90 bp | AATAAATGCCATTCTTGTCCAAGCAGAGTCAAACAAGGTTCATATGAACATTCTAATGTTTTACCTGCATaGATACTGTCTGTGAATGTA | + |
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Preference number: 2 (lower is better) Translates to: NKCHSCPSRVKQGSYEHSNVLPA*ILSVNV Trigger: TACATTCACAGACAGTATGCATGCAGGTAAAACATT...AGAATGTTCATATGAACCTTGTTTGACTCTGCTTGGACAAGAATGGCATTTATT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| 3UTR TCA 72 bp | CTCAACAGCAACCACAAACAGGCTTTAAAACAAACATaGCGCTTCAAACTCAGAGCAGTGACGAGTGGCCCG | + |
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Preference number: 3 (lower is better) Translates to: LNSNHKQALKQT*RFKLRAVTSGP Trigger: CGGGCCACTCGTCACTGCTCTGAGTTTGAAGCGTCATGTTTGTTTTAAAGCCTGTTTGTGGTTGCTGTTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| 3UTR-3UTR CAA 90 bp | AGAGGAGCTGTAACTAAACTAAAGGGAGGTCAGCCTCAACAGCAACCACAAACACTTGGGCTGCCATCGTaGGCTTATGTATGCAGTAGT | + |
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Preference number: 3 (lower is better) Translates to: RGAVTKLKGGQPQQQPQTLGLPS*AYVCSS Trigger: ACTACTGCATACATAAGCCAACGATGGCAGCCCAAG...TGTTTGTGGTTGCTGTTGAGGCTGACCTCCCTTTAGTTTAGTTACAGCTCCTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| 3UTR TCA 72 bp | GGCAAGGATGATCTTAAACTATGGAGTGCTGAGATTTaGGGCTTGGGCTGCCATCGTTGGCTTATGTATGCA | + |
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Preference number: 3 (lower is better) Translates to: GKDDLKLWSAEI*GLGCHRWLMYA Trigger: TGCATACATAAGCCAACGATGGCAGCCCAAGCCTCAAATCTCAGCACTCCATAGTTTAAGATCATCCTTGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| 3UTR CCA 72 bp | CAGAAGAGAACATTAGATCCTCCTAGGAGTTATAGCTaGTTATTAAATGTCATGTGGGTCCTCTGGAGGAGC | + |
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Preference number: 3 (lower is better) Translates to: QKRTLDPPRSYS*LLNVMWVLWRS Trigger: GCTCCTCCAGAGGACCCACATGACATTTAATAACCAGCTATAACTCCTAGGAGGATCTAATGTTCTCTTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| 3UTR TCA 72 bp | GTACAACAAAAAGTCAGGAGCAGAAAGCATGTATTCTaGGCACACACAAATGTGTGTACACACAGCACACAC | + |
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Preference number: 3 (lower is better) Translates to: VQQKVRSRKHVF*AHTNVCTHSTH Trigger: GTGTGTGCTGTGTGTACACACATTTGTGTGTGCTCAGAATACATGCTTTCTGCTCCTGACTTTTTGTTGTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| 3UTR GCA 72 bp | CCAGTTTACGTTACTACAACTACCAATATACAACAGTaGAAATCTGTCATTACAAGTGATGTACTGAAGCAG | + |
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Preference number: 3 (lower is better) Translates to: PVYVTTTTNIQQ*KSVITSDVLKQ Trigger: CTGCTTCAGTACATCACTTGTAATGACAGATTTGCACTGTTGTATATTGGTAGTTGTAGTAACGTAAACTGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| 3UTR TCA 72 bp | GAAGTTGTATGCCCTCAGTCAGTAATCTTCCCTATTTaGGTGACCAATTATAAAATATTTACCAGGAAGACA | + |
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Preference number: 3 (lower is better) Translates to: EVVCPQSVIFPI*VTNYKIFTRKT Trigger: TGTCTTCCTGGTAAATATTTTATAATTGGTCACTCAAATAGGGAAGATTACTGACTGAGGGCATACAACTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| 3UTR TCA 72 bp | TACAACAGTGCAAATCTGTCATTACAAGTGATGTACTaGAGCAGTTATCAGTCAGTATGTCAGGTAAATGTA | + |
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Preference number: 3 (lower is better) Translates to: YNSANLSLQVMY*SSYQSVCQVNV Trigger: TACATTTACCTGACATACTGACTGATAACTGCTTCAGTACATCACTTGTAATGACAGATTTGCACTGTTGTA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| CDS-3UTR CCA 90 bp | AGAGGAGCTGTAACTAAACTAAAGGGAGGTCAGCCTCAACAGCAACCACAAACACATTCCAGAAGTGGGTaGGCCACCGCCTTGGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: RGAVTKLKGGQPQQQPQTHSRSG*ATALAV Trigger: CACAGCCAAGGCGGTGGCCCACCCACTTCTGGAATG...TGTTTGTGGTTGCTGTTGAGGCTGACCTCCCTTTAGTTTAGTTACAGCTCCTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| 3UTR CAA 72 bp | AGCCTGATGGAGAACGCCTACGTGTATAAACCCGTCTaGGGAACCGTGCTCTTTGCAAGCCTAAGAAACCAC | + |
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Preference number: 4 (lower is better) Translates to: SLMENAYVYKPV*GTVLFASLRNH Trigger: GTGGTTTCTTAGGCTTGCAAAGAGCACGGTTCCCAAGACGGGTTTATACACGTAGGCGTTCTCCATCAGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS-3UTR CCA 90 bp | AGAGGAGCTGTAACTAAACTAAAGGGAGGTCAGCCTCAACAGCAACCACAAACACCACCGCCTTGGCTGTaGGAAGCTGACGTATTTGAC | + |
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Preference number: 4 (lower is better) Translates to: RGAVTKLKGGQPQQQPQTPPPWL*EADVFD Trigger: GTCAAATACGTCAGCTTCCCACAGCCAAGGCGGTGG...TGTTTGTGGTTGCTGTTGAGGCTGACCTCCCTTTAGTTTAGTTACAGCTCCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| CDS-3UTR CCA 90 bp | AAATGTGTGTACACACAGCACACACACAATACAGCTTGCTTAGGTTCCTTTATGGGTGGGCCACCGCCTTaGCTGTGGGAAGCTGACGTA | + |
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Preference number: 4 (lower is better) Translates to: KCVYTQHTHNTACLGSFMGGPPP*LWEADV Trigger: TACGTCAGCTTCCCACAGCCAAGGCGGTGGCCCACC...CATAAAGGAACCTAAGCAAGCTGTATTGTGTGTGTGCTGTGTGTACACACATTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS-3UTR CCA 90 bp | AAAAAGTCAGGAGCAGAAAGCATGTATTCTGAGCACACACAAATGTGTGTACACGGTGGGCCACCGCCTTaGCTGTGGGAAGCTGACGTA | + |
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Preference number: 4 (lower is better) Translates to: KKSGAESMYSEHTQMCVHGGPPP*LWEADV Trigger: TACGTCAGCTTCCCACAGCCAAGGCGGTGGCCCACC...GTGTACACACATTTGTGTGTGCTCAGAATACATGCTTTCTGCTCCTGACTTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| 3UTR CAA 72 bp | TCAGATACAAATACAGGCTTCACCTTGTTAGCCAGCTaGGGAGCTGGCCAAGGACAGGTTCTAATCCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: SDTNTGFTLLAS*GAGQGQVLIPA Trigger: TGCTGGGATTAGAACCTGTCCTTGGCCAGCTCCCAAGCTGGCTAACAAGGTGAAGCCTGTATTTGTATCTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| CDS-3UTR CCA 90 bp | AAAAAGTCAGGAGCAGAAAGCATGTATTCTGAGCACACACAAATGTGTGTACACCATTCCAGAAGTGGGTaGGCCACCGCCTTGGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: KKSGAESMYSEHTQMCVHHSRSG*ATALAV Trigger: CACAGCCAAGGCGGTGGCCCACCCACTTCTGGAATG...GTGTACACACATTTGTGTGTGCTCAGAATACATGCTTTCTGCTCCTGACTTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS-3UTR GCA 90 bp | CAGGCAAGGATGATCTTAAACTATGGAGTGCTGAGATTTGAGGCTTGGGCTGCCCGTAACGTAGAACTGTaGAGAAGAGGAGTAATCACC | + |
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Preference number: 4 (lower is better) Translates to: QARMILNYGVLRFEAWAARNVEL*RRGVIT Trigger: GGTGATTACTCCTCTTCTGCACAGTTCTACGTTACG...GGCAGCCCAAGCCTCAAATCTCAGCACTCCATAGTTTAAGATCATCCTTGCCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| CDS-3UTR CCA 90 bp | AAATGTGTGTACACACAGCACACACACAATACAGCTTGCTTAGGTTCCTTTATGCCACCGCCTTGGCTGTaGGAAGCTGACGTATTTGAC | + |
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Preference number: 4 (lower is better) Translates to: KCVYTQHTHNTACLGSFMPPPWL*EADVFD Trigger: GTCAAATACGTCAGCTTCCCACAGCCAAGGCGGTGG...CATAAAGGAACCTAAGCAAGCTGTATTGTGTGTGTGCTGTGTGTACACACATTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS-3UTR CCA 90 bp | AGAGGAGTAATCACCTATGAGAACATGCTTTTCCCAGTTCACGTCACACACACTTGGCAAAAGCAAAGATaGAGGCAAACCACTCGAGGA | + |
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Preference number: 4 (lower is better) Translates to: RGVITYENMLFPVHVTHTWQKQR*RQTTRG Trigger: TCCTCGAGTGGTTTGCCTCCATCTTTGCTTTTGCCA...AGTGTGTGTGACGTGAACTGGGAAAAGCATGTTCTCATAGGTGATTACTCCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000122861.8 |
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| 3UTR CAA 72 bp | ATTTCCATGTTTTCAGATACAAATACAGGCTTCACCTaGTTAGCCAGCTTGGGAGCTGGCCAAGGACAGGTT | + |
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Preference number: 4 (lower is better) Translates to: ISMFSDTNTGFT*LASLGAGQGQV Trigger: AACCTGTCCTTGGCCAGCTCCCAAGCTGGCTAACAAGGTGAAGCCTGTATTTGTATCTGAAAACATGGAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| CDS-3UTR CCA 90 bp | AGAGGAGCTGTAACTAAACTAAAGGGAGGTCAGCCTCAACAGCAACCACAAACAGTAGCTGTCACAGTCTaGTTCTTATTGACACCAACT | + |
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Preference number: 4 (lower is better) Translates to: RGAVTKLKGGQPQQQPQTVAVTV*FLLTPT Trigger: AGTTGGTGTCAATAAGAACCAGACTGTGACAGCTAC...TGTTTGTGGTTGCTGTTGAGGCTGACCTCCCTTTAGTTTAGTTACAGCTCCTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| CDS-3UTR GCA 90 bp | AAAAAGTCAGGAGCAGAAAGCATGTATTCTGAGCACACACAAATGTGTGTACACGCAGAAGGGCAGCAATaGAGTACAGGAACACAAAGA | + |
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Preference number: 4 (lower is better) Translates to: KKSGAESMYSEHTQMCVHAEGQQ*STGTQR Trigger: TCTTTGTGTTCCTGTACTGCATTGCTGCCCTTCTGC...GTGTACACACATTTGTGTGTGCTCAGAATACATGCTTTCTGCTCCTGACTTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS-3UTR GCA 90 bp | AAATGTGTGTACACACAGCACACACACAATACAGCTTGCTTAGGTTCCTTTATGGCAGAAGGGCAGCAATaGAGTACAGGAACACAAAGA | + |
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Preference number: 4 (lower is better) Translates to: KCVYTQHTHNTACLGSFMAEGQQ*STGTQR Trigger: TCTTTGTGTTCCTGTACTGCATTGCTGCCCTTCTGC...CATAAAGGAACCTAAGCAAGCTGTATTGTGTGTGTGCTGTGTGTACACACATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS-3UTR CCA 90 bp | AAAAAGTCAGGAGCAGAAAGCATGTATTCTGAGCACACACAAATGTGTGTACACTGGCAAAAGCAAAGATaGAGGCAAACCACTCGAGGA | + |
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Preference number: 4 (lower is better) Translates to: KKSGAESMYSEHTQMCVHWQKQR*RQTTRG Trigger: TCCTCGAGTGGTTTGCCTCCATCTTTGCTTTTGCCA...GTGTACACACATTTGTGTGTGCTCAGAATACATGCTTTCTGCTCCTGACTTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS-3UTR CCA 90 bp | AAATGTGTGTACACACAGCACACACACAATACAGCTTGCTTAGGTTCCTTTATGACGGACTGTGTAAGCTaGTCTCCTTGTACACAAACC | + |
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Preference number: 4 (lower is better) Translates to: KCVYTQHTHNTACLGSFMTDCVS*SPCTQT Trigger: GGTTTGTGTACAAGGAGACCAGCTTACACAGTCCGT...CATAAAGGAACCTAAGCAAGCTGTATTGTGTGTGTGCTGTGTGTACACACATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS-3UTR TCA 90 bp | CTGCAGCTTGTCTTCTGGGAAGTTAAAGCTTATCACTTCTGTCCTAGAAATTGCAGGAGTAATCACCTATaGGAACATGCTTTTCCCAGT | + |
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Preference number: 4 (lower is better) Translates to: LQLVFWEVKAYHFCPRNCRSNHL*EHAFPS Trigger: ACTGGGAAAAGCATGTTCTCATAGGTGATTACTCCT...GCAATTTCTAGGACAGAAGTGATAAGCTTTAACTTCCCAGAAGACAAGCTGCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| CDS-3UTR GCA 90 bp | AAAAAGTCAGGAGCAGAAAGCATGTATTCTGAGCACACACAAATGTGTGTACACCGTAACGTAGAACTGTaGAGAAGAGGAGTAATCACC | + |
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Preference number: 4 (lower is better) Translates to: KKSGAESMYSEHTQMCVHRNVEL*RRGVIT Trigger: GGTGATTACTCCTCTTCTGCACAGTTCTACGTTACG...GTGTACACACATTTGTGTGTGCTCAGAATACATGCTTTCTGCTCCTGACTTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS-3UTR TCA 90 bp | AAAAAGTCAGGAGCAGAAAGCATGTATTCTGAGCACACACAAATGTGTGTACACAGGAGTAATCACCTATaGGAACATGCTTTTCCCAGT | + |
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Preference number: 4 (lower is better) Translates to: KKSGAESMYSEHTQMCVHRSNHL*EHAFPS Trigger: ACTGGGAAAAGCATGTTCTCATAGGTGATTACTCCT...GTGTACACACATTTGTGTGTGCTCAGAATACATGCTTTCTGCTCCTGACTTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS-3UTR GCA 90 bp | AAATGTGTGTACACACAGCACACACACAATACAGCTTGCTTAGGTTCCTTTATGTCACCTATGAGAACATaGTTTTCCCAGTTCACGTCA | + |
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Preference number: 4 (lower is better) Translates to: KCVYTQHTHNTACLGSFMSPMRT*FSQFTS Trigger: TGACGTGAACTGGGAAAAGCATGTTCTCATAGGTGA...CATAAAGGAACCTAAGCAAGCTGTATTGTGTGTGTGCTGTGTGTACACACATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS-3UTR GCA 90 bp | AAAAAGTCAGGAGCAGAAAGCATGTATTCTGAGCACACACAAATGTGTGTACACTCACCTATGAGAACATaGTTTTCCCAGTTCACGTCA | + |
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Preference number: 4 (lower is better) Translates to: KKSGAESMYSEHTQMCVHSPMRT*FSQFTS Trigger: TGACGTGAACTGGGAAAAGCATGTTCTCATAGGTGA...GTGTACACACATTTGTGTGTGCTCAGAATACATGCTTTCTGCTCCTGACTTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS-3UTR GCA 90 bp | AAATGTGTGTACACACAGCACACACACAATACAGCTTGCTTAGGTTCCTTTATGCAGGAACACAAAGACTaGAAACGTAACGTAGAACTG | + |
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Preference number: 4 (lower is better) Translates to: KCVYTQHTHNTACLGSFMQEHKD*KRNVEL Trigger: CAGTTCTACGTTACGTTTGCAGTCTTTGTGTTCCTG...CATAAAGGAACCTAAGCAAGCTGTATTGTGTGTGTGCTGTGTGTACACACATTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS-3UTR CCA 90 bp | AAATGTGTGTACACACAGCACACACACAATACAGCTTGCTTAGGTTCCTTTATGGTAGCTGTCACAGTCTaGTTCTTATTGACACCAACT | + |
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Preference number: 4 (lower is better) Translates to: KCVYTQHTHNTACLGSFMVAVTV*FLLTPT Trigger: AGTTGGTGTCAATAAGAACCAGACTGTGACAGCTAC...CATAAAGGAACCTAAGCAAGCTGTATTGTGTGTGTGCTGTGTGTACACACATTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS-3UTR CCA 90 bp | AATAAATGCCATTCTTGTCCAAGCAGAGTCAAACAAGGTTCATATGAACATTCTTGGCAAAAGCAAAGATaGAGGCAAACCACTCGAGGA | + |
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Preference number: 4 (lower is better) Translates to: NKCHSCPSRVKQGSYEHSWQKQR*RQTTRG Trigger: TCCTCGAGTGGTTTGCCTCCATCTTTGCTTTTGCCA...AGAATGTTCATATGAACCTTGTTTGACTCTGCTTGGACAAGAATGGCATTTATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| CDS-3UTR CCA 90 bp | AATAAATGCCATTCTTGTCCAAGCAGAGTCAAACAAGGTTCATATGAACATTCTACGGACTGTGTAAGCTaGTCTCCTTGTACACAAACC | + |
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Preference number: 4 (lower is better) Translates to: NKCHSCPSRVKQGSYEHSTDCVS*SPCTQT Trigger: GGTTTGTGTACAAGGAGACCAGCTTACACAGTCCGT...AGAATGTTCATATGAACCTTGTTTGACTCTGCTTGGACAAGAATGGCATTTATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| CDS-3UTR CAA 90 bp | AGAGGAGCTGTAACTAAACTAAAGGGAGGTCAGCCTCAACAGCAACCACAAACAAAGCCGAGCGGCTCCTaGAGCGGGTTGAGGTTGATC | + |
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Preference number: 5 (lower is better) Translates to: RGAVTKLKGGQPQQQPQTKPSGS*SGLRLI Trigger: GATCAACCTCAACCCGCTCAAGGAGCCGCTCGGCTT...TGTTTGTGGTTGCTGTTGAGGCTGACCTCCCTTTAGTTTAGTTACAGCTCCTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| CDS-3UTR CAA 90 bp | TCACTGATTGATATAGCCCAGGCTAGCCTTGAACTCCCCAAGCAGGCAAGGATGGGGAAGCTGACGTATTaGACGGACTGTGTAAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: SLIDIAQASLELPKQARMGKLTY*TDCVSW Trigger: CCAGCTTACACAGTCCGTCAAATACGTCAGCTTCCC...CATCCTTGCCTGCTTGGGGAGTTCAAGGCTAGCCTGGGCTATATCAATCAGTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| CDS-3UTR CAA 90 bp | TATGAGAACATGCTTTTCCCAGTTCACGTCACACACACTGACATTTGGAGGTGTAAGCCGAGCGGCTCCTaGAGCGGGTTGAGGTTGATC | + |
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Preference number: 5 (lower is better) Translates to: YENMLFPVHVTHTDIWRCKPSGS*SGLRLI Trigger: GATCAACCTCAACCCGCTCAAGGAGCCGCTCGGCTT...ACACCTCCAAATGTCAGTGTGTGTGACGTGAACTGGGAAAAGCATGTTCTCATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122861.8 |
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| CDS-3UTR CAA 90 bp | AAATGTGTGTACACACAGCACACACACAATACAGCTTGCTTAGGTTCCTTTATGAAGCCGAGCGGCTCCTaGAGCGGGTTGAGGTTGATC | + |
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Preference number: 5 (lower is better) Translates to: KCVYTQHTHNTACLGSFMKPSGS*SGLRLI Trigger: GATCAACCTCAACCCGCTCAAGGAGCCGCTCGGCTT...CATAAAGGAACCTAAGCAAGCTGTATTGTGTGTGTGCTGTGTGTACACACATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS-3UTR CAA 90 bp | TCACTGATTGATATAGCCCAGGCTAGCCTTGAACTCCCCAAGCAGGCAAGGATGACAGTCTGGTTCTTATaGACACCAACTTTAGGACAG | + |
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Preference number: 5 (lower is better) Translates to: SLIDIAQASLELPKQARMTVWFL*TPTLGQ Trigger: CTGTCCTAAAGTTGGTGTCAATAAGAACCAGACTGT...CATCCTTGCCTGCTTGGGGAGTTCAAGGCTAGCCTGGGCTATATCAATCAGTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| CDS-3UTR CAA 90 bp | TCACTGATTGATATAGCCCAGGCTAGCCTTGAACTCCCCAAGCAGGCAAGGATGTTTAGGACAGTTCACTaGAATTTCTGTTTTGCCCTT | + |
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Preference number: 5 (lower is better) Translates to: SLIDIAQASLELPKQARMFRTVH*NFCFAL Trigger: AAGGGCAAAACAGAAATTCAAGTGAACTGTCCTAAA...CATCCTTGCCTGCTTGGGGAGTTCAAGGCTAGCCTGGGCTATATCAATCAGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076698.13 |
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| CDS-3UTR CAA 90 bp | AAAAAGTCAGGAGCAGAAAGCATGTATTCTGAGCACACACAAATGTGTGTACACGGGAAGCTGACGTATTaGACGGACTGTGTAAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: KKSGAESMYSEHTQMCVHGKLTY*TDCVSW Trigger: CCAGCTTACACAGTCCGTCAAATACGTCAGCTTCCC...GTGTACACACATTTGTGTGTGCTCAGAATACATGCTTTCTGCTCCTGACTTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS-3UTR CAA 90 bp | GTAATCACCTATGAGAACATGCTTTTCCCAGTTCACGTCACACACACTGACATTACAGTCTGGTTCTTATaGACACCAACTTTAGGACAG | + |
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Preference number: 5 (lower is better) Translates to: VITYENMLFPVHVTHTDITVWFL*TPTLGQ Trigger: CTGTCCTAAAGTTGGTGTCAATAAGAACCAGACTGT...AATGTCAGTGTGTGTGACGTGAACTGGGAAAAGCATGTTCTCATAGGTGATTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122861.8 |
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| CDS-3UTR CAA 90 bp | AAATGTGTGTACACACAGCACACACACAATACAGCTTGCTTAGGTTCCTTTATGACAGTCTGGTTCTTATaGACACCAACTTTAGGACAG | + |
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Preference number: 5 (lower is better) Translates to: KCVYTQHTHNTACLGSFMTVWFL*TPTLGQ Trigger: CTGTCCTAAAGTTGGTGTCAATAAGAACCAGACTGT...CATAAAGGAACCTAAGCAAGCTGTATTGTGTGTGTGCTGTGTGTACACACATTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS-3UTR CAA 90 bp | AAATGTGTGTACACACAGCACACACACAATACAGCTTGCTTAGGTTCCTTTATGTGTAAGCTGGTCTCCTaGTACACAAACCAAGCATTT | + |
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Preference number: 5 (lower is better) Translates to: KCVYTQHTHNTACLGSFMCKLVS*YTNQAF Trigger: AAATGCTTGGTTTGTGTACAAGGAGACCAGCTTACA...CATAAAGGAACCTAAGCAAGCTGTATTGTGTGTGTGCTGTGTGTACACACATTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS-3UTR CAA 90 bp | AAAAAGTCAGGAGCAGAAAGCATGTATTCTGAGCACACACAAATGTGTGTACACTGTAAGCTGGTCTCCTaGTACACAAACCAAGCATTT | + |
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Preference number: 5 (lower is better) Translates to: KKSGAESMYSEHTQMCVHCKLVS*YTNQAF Trigger: AAATGCTTGGTTTGTGTACAAGGAGACCAGCTTACA...GTGTACACACATTTGTGTGTGCTCAGAATACATGCTTTCTGCTCCTGACTTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS-3UTR CAA 90 bp | AAATGTGTGTACACACAGCACACACACAATACAGCTTGCTTAGGTTCCTTTATGTTTAGGACAGTTCACTaGAATTTCTGTTTTGCCCTT | + |
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Preference number: 5 (lower is better) Translates to: KCVYTQHTHNTACLGSFMFRTVH*NFCFAL Trigger: AAGGGCAAAACAGAAATTCAAGTGAACTGTCCTAAA...CATAAAGGAACCTAAGCAAGCTGTATTGTGTGTGTGCTGTGTGTACACACATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS CCA 72 bp | TACATTCCAGAAGTGGGTGGGCCACCGCCTTGGCTGTaGGAAGCTGACGTATTTGACGGACTGTGTAAGCTG | + |
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Preference number: 6 (lower is better) Translates to: YIPEVGGPPPWL*EADVFDGLCKL Trigger: CAGCTTACACAGTCCGTCAAATACGTCAGCTTCCCACAGCCAAGGCGGTGGCCCACCCACTTCTGGAATGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS CAA 72 bp | GTGGGCCACCGCCTTGGCTGTGGGAAGCTGACGTATTaGACGGACTGTGTAAGCTGGTCTCCTTGTACACAA | + |
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Preference number: 6 (lower is better) Translates to: VGHRLGCGKLTY*TDCVSWSPCTQ Trigger: TTGTGTACAAGGAGACCAGCTTACACAGTCCGTCAAATACGTCAGCTTCCCACAGCCAAGGCGGTGGCCCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 |
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| CDS TCA 72 bp | TGGTTCTTATTGACACCAACTTTAGGACAGTTCACTTaGATTTCTGTTTTGCCCTTAAACCCACCACAGGTG | + |
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Preference number: 6 (lower is better) Translates to: WFLLTPTLGQFT*ISVLPLNPPQV Trigger: CACCTGTGGTGGGTTTAAGGGCAAAACAGAAATTCAAGTGAACTGTCCTAAAGTTGGTGTCAATAAGAACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020885.13 ENSMUST00000076698.13 ENSMUST00000122861.8 |
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