RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SYNPO2L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039376

Ensembl transcript IDs: ENSMUST00000057090.12, ENSMUST00000117386.2, ENSMUST00000119483.2

Found 435 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTCTCCTTGGTCACTTTCACTCATTCCAGCCTTGTTCCTGGCTTTTaGCTTGCTCTCCCCGCCATCCACTCTGGCTCTCTTCACCATCCT +
Preference number: 1 (lower is better)
Translates to: LSLVTFTHSSLVPGF*LALPAIHSGSLHHP
Trigger: AGGATGGTGAAGAGAGCCAGAGTGGATGGCGGGGAGAGCAAGGCAAAAGCCAGGAACAAGGCTGGAATGAGTGAAAGTGACCAAGGAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR GCA 90 bp GCAAAGCACTGGGCTTATACGGGTAGGGTAGAAAAGACCCATCCTTaGCCTTCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCT +
Preference number: 1 (lower is better)
Translates to: AKHWAYTGRVEKTHP*PSGLELRNPPASAS
Trigger: AGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGAAGGGCAAGGATGGGTCTTTTCTACCCTACCCGTATAAGCCCAGTGCTTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR GCA 90 bp AACAGCAAGCATGGCTGGTGGTGGTCTTCACGGAAGGACAGTCCTTaGCCTTCTGGGATCAGACATGAGGGCCTGAATCTGCAAAGCACT +
Preference number: 1 (lower is better)
Translates to: NSKHGWWWSSRKDSP*PSGIRHEGLNLQST
Trigger: AGTGCTTTGCAGATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGGACTGTCCTTCCGTGAAGACCACCACCAGCCATGCTTGCTGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR GCA 90 bp CTTGGTCACTTTCACTCATTCCAGCCTTGTTCCTGGCTTTTGCCTTaGTCTCCCCGCCATCCACTCTGGCTCTCTTCACCATCCTTTCTG +
Preference number: 1 (lower is better)
Translates to: LGHFHSFQPCSWLLP*SPRHPLWLSSPSFL
Trigger: CAGAAAGGATGGTGAAGAGAGCCAGAGTGGATGGCGGGGAGAGCAAGGCAAAAGCCAGGAACAAGGCTGGAATGAGTGAAAGTGACCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR CCA 90 bp AGGAAAAGATTGGTTTCCAGGTCAAACAGCAAGCATGGCTGGTGGTaGTCTTCACGGAAGGACAGTCCTTGCCCTTCTGGGATCAGACAT +
Preference number: 1 (lower is better)
Translates to: RKRLVSRSNSKHGWW*SSRKDSPCPSGIRH
Trigger: ATGTCTGATCCCAGAAGGGCAAGGACTGTCCTTCCGTGAAGACCACCACCAGCCATGCTTGCTGTTTGACCTGGAAACCAATCTTTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR CCA 90 bp CAAAGGAAAAGATTGGTTTCCAGGTCAAACAGCAAGCATGGCTGGTaGTGGTCTTCACGGAAGGACAGTCCTTGCCCTTCTGGGATCAGA +
Preference number: 1 (lower is better)
Translates to: QRKRLVSRSNSKHGW*WSSRKDSPCPSGIR
Trigger: TCTGATCCCAGAAGGGCAAGGACTGTCCTTCCGTGAAGACCACCACCAGCCATGCTTGCTGTTTGACCTGGAAACCAATCTTTTCCTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR CCA 90 bp CTGAGGGAAACACTATCTCTGGCAATCGGCAATTGGCCTCAGATGTaGGGAGAAAGCCTAGGTAGGACAAAGCAGAAGAAACTTCTGGGA +
Preference number: 1 (lower is better)
Translates to: LRETLSLAIGNWPQM*GESLGRTKQKKLLG
Trigger: TCCCAGAAGTTTCTTCTGCTTTGTCCTACCTAGGCTTTCTCCCCACATCTGAGGCCAATTGCCGATTGCCAGAGATAGTGTTTCCCTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR TCA 90 bp ATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGTAGCTCTTaGCCCCCACAGGTCTTTCTGAAGCTATCTGACCCTTTCAGTAGA +
Preference number: 1 (lower is better)
Translates to: MLQALLSQEFFCSSS*PPQVFLKLSDPFSR
Trigger: TCTACTGAAAGGGTCAGATAGCTTCAGAAAGACCTGTGGGGGTCAAGAGCTACTACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR TCA 90 bp CAGGCCCATGAAATTGTCCCTGTCTCCCAGTCTTGTCAGACACGTTaGTTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCA +
Preference number: 1 (lower is better)
Translates to: QAHEIVPVSQSCQTR*FHKMLCTYLYMLQA
Trigger: TGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGACAGGGACAATTTCATGGGCCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR GCA 90 bp GTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATaGTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGTAGCTCTT +
Preference number: 1 (lower is better)
Translates to: VRHVDFTRCCAHIST*YRHSSLRSFSVVAL
Trigger: AAGAGCTACTACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR CAA 90 bp TCTCTCCTTGGTCACTTTCACTCATTCCAGCCTTGTTCCTGGCTTTaGCCTTGCTCTCCCCGCCATCCACTCTGGCTCTCTTCACCATCC +
Preference number: 2 (lower is better)
Translates to: SLLGHFHSFQPCSWL*PCSPRHPLWLSSPS
Trigger: GGATGGTGAAGAGAGCCAGAGTGGATGGCGGGGAGAGCAAGGCAAAAGCCAGGAACAAGGCTGGAATGAGTGAAAGTGACCAAGGAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR-3UTR TCA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAACTAGGGAAAGCGGAGTaGGGAGGATGGAGGGGCTTG +
Preference number: 2 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKLGKAE*GGWRGL
Trigger: CAAGCCCCTCCATCCTCCTCACTCCGCTTTCCCTAG...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR CAA 90 bp CCTTGGTCACTTTCACTCATTCCAGCCTTGTTCCTGGCTTTTGCCTaGCTCTCCCCGCCATCCACTCTGGCTCTCTTCACCATCCTTTCT +
Preference number: 2 (lower is better)
Translates to: PWSLSLIPALFLAFA*LSPPSTLALFTILS
Trigger: AGAAAGGATGGTGAAGAGAGCCAGAGTGGATGGCGGGGAGAGCAAGGCAAAAGCCAGGAACAAGGCTGGAATGAGTGAAAGTGACCAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR-3UTR TCA 90 bp CCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATCTGCAAAGCACTGGGCTTTTCTGTAGTAGCTCTTaGCCCCCACAGGTCTTTCTG +
Preference number: 2 (lower is better)
Translates to: PCPSGIRHEGLNLQSTGLFCSSS*PPQVFL
Trigger: CAGAAAGACCTGTGGGGGTCAAGAGCTACTACAGAA...AAGCCCAGTGCTTTGCAGATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR-3UTR TCA 90 bp CCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATCTGCAAAGCACTGGGCTTTATAACTCAGGCCCATaGAATTGTCCCTGTCTCCCA +
Preference number: 2 (lower is better)
Translates to: PCPSGIRHEGLNLQSTGLYNSGP*NCPCLP
Trigger: TGGGAGACAGGGACAATTTCATGGGCCTGAGTTATA...AAGCCCAGTGCTTTGCAGATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR-3UTR TCA 90 bp GAATCTGCAAAGCACTGGGCTTATACGGGTAGGGTAGAAAAGACCCATCCTTGCTTCTGTAGTAGCTCTTaGCCCCCACAGGTCTTTCTG +
Preference number: 2 (lower is better)
Translates to: ESAKHWAYTGRVEKTHPCFCSSS*PPQVFL
Trigger: CAGAAAGACCTGTGGGGGTCAAGAGCTACTACAGAA...GCAAGGATGGGTCTTTTCTACCCTACCCGTATAAGCCCAGTGCTTTGCAGATTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR-3UTR CCA 90 bp CCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATCTGCAAAGCACTGGGCTTACTTTCCTCTCTCCTTaGTCACTTTCACTCATTCCA +
Preference number: 2 (lower is better)
Translates to: PCPSGIRHEGLNLQSTGLTFLSP*SLSLIP
Trigger: TGGAATGAGTGAAAGTGACCAAGGAGAGAGGAAAGT...AAGCCCAGTGCTTTGCAGATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR-3UTR TCA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAATATAACTCAGGCCCATaGAATTGTCCCTGTCTCCCA +
Preference number: 2 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKYNSGP*NCPCLP
Trigger: TGGGAGACAGGGACAATTTCATGGGCCTGAGTTATA...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR-3UTR CCA 90 bp GTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCTCTGAGGATGGAGGGGCTTaGGACACAGTTCAGCCTCTT +
Preference number: 2 (lower is better)
Translates to: VDFTRCCAHISTCYRHSSEDGGA*DTVQPL
Trigger: AAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC...AGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR-3UTR CCA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTGAGGATGGAGGGGCTTaGGACACAGTTCAGCCTCTT +
Preference number: 2 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISEDGGA*DTVQPL
Trigger: AAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR-3UTR GCA 90 bp CCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATCTGCAAAGCACTGGGCTTTTTCACAAGATGCTGTaGACATATCTCTACATGCTA +
Preference number: 2 (lower is better)
Translates to: PCPSGIRHEGLNLQSTGLFHKML*TYLYML
Trigger: TAGCATGTAGAGATATGTGCACAGCATCTTGTGAAA...AAGCCCAGTGCTTTGCAGATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR-3UTR CCA 90 bp GGGCATACGTTTATTCTTGTGCACAAACCAAAGAATTATGACACCCAATACTGCGCTGAGACCTCTGGGTaGAGAAGCCAGAGAGGCAAG +
Preference number: 2 (lower is better)
Translates to: GHTFILVHKPKNYDTQYCAETSG*RSQRGK
Trigger: CTTGCCTCTCTGGCTTCTCCACCCAGAGGTCTCAGC...GCAGTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR CAA 90 bp ACCACCTGGCTACATAGTTTCTTGTTAGCCAACTTTCCTCTCTCCTaGGTCACTTTCACTCATTCCAGCCTTGTTCCTGGCTTTTGCCTT +
Preference number: 2 (lower is better)
Translates to: TTWLHSFLLANFPLS*VTFTHSSLVPGFCL
Trigger: AAGGCAAAAGCCAGGAACAAGGCTGGAATGAGTGAAAGTGACCAAGGAGAGAGGAAAGTTGGCTAACAAGAAACTATGTAGCCAGGTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR-3UTR TCA 90 bp GGGCATACGTTTATTCTTGTGCACAAACCAAAGAATTATGACACCCAATACTGCTCAGACATGAGGGCCTaGATCTGCAAAGCACTGGGC +
Preference number: 2 (lower is better)
Translates to: GHTFILVHKPKNYDTQYCSDMRA*ICKALG
Trigger: GCCCAGTGCTTTGCAGATTCAGGCCCTCATGTCTGA...GCAGTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR-3UTR CCA 90 bp TGTGGGCATACGTTTATTCTTGTGCACAAACCAAAGAATTATGACACCCAATACGCTGAGACCTCTGGGTaGAGAAGCCAGAGAGGCAAG +
Preference number: 2 (lower is better)
Translates to: CGHTFILVHKPKNYDTQYAETSG*RSQRGK
Trigger: CTTGCCTCTCTGGCTTCTCCACCCAGAGGTCTCAGC...GTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCCCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR-3UTR TCA 90 bp GGGCATACGTTTATTCTTGTGCACAAACCAAAGAATTATGACACCCAATACTGCAAAACAGAGACCTGCTaGGACCTCTGGGTGGAGAAG +
Preference number: 2 (lower is better)
Translates to: GHTFILVHKPKNYDTQYCKTETC*DLWVEK
Trigger: CTTCTCCACCCAGAGGTCTCAGCAGGTCTCTGTTTT...GCAGTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR-3UTR TCA 90 bp GTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCTCTAAGCTTGCCTTACAGTaGGTGACCATTTTGCCTGAG +
Preference number: 2 (lower is better)
Translates to: VDFTRCCAHISTCYRHSSKLALQ*VTILPE
Trigger: CTCAGGCAAAATGGTCACTCACTGTAAGGCAAGCTT...AGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR-3UTR TCA 90 bp TGTGGGCATACGTTTATTCTTGTGCACAAACCAAAGAATTATGACACCCAATACAAAACAGAGACCTGCTaGGACCTCTGGGTGGAGAAG +
Preference number: 2 (lower is better)
Translates to: CGHTFILVHKPKNYDTQYKTETC*DLWVEK
Trigger: CTTCTCCACCCAGAGGTCTCAGCAGGTCTCTGTTTT...GTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCCCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR-3UTR CCA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTTGCCTGAGATCTCAGTaGTCACTTTACAGTGTGCTT +
Preference number: 2 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISCLRSQ*SLYSVL
Trigger: AAGCACACTGTAAAGTGACCACTGAGATCTCAGGCA...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR-3UTR CCA 90 bp TGTGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTATGCCTGAGATCTCAGTaGTCACTTTACAGTGTGCTT +
Preference number: 2 (lower is better)
Translates to: CAHISTCYRHSSLRSFSVCLRSQ*SLYSVL
Trigger: AAGCACACTGTAAAGTGACCACTGAGATCTCAGGCA...TACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR-3UTR CCA 90 bp TGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGTTGCCTGAGATCTCAGTaGTCACTTTACAGTGTGCTT +
Preference number: 2 (lower is better)
Translates to: CTYLYMLQALLSQEFFCSCLRSQ*SLYSVL
Trigger: AAGCACACTGTAAAGTGACCACTGAGATCTCAGGCA...ACTACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR-3UTR CCA 90 bp TGTGGGCATACGTTTATTCTTGTGCACAAACCAAAGAATTATGACACCCAATACAACAGCAAGCATGGCTaGTGGTGGTCTTCACGGAAG +
Preference number: 2 (lower is better)
Translates to: CGHTFILVHKPKNYDTQYNSKHG*WWSSRK
Trigger: CTTCCGTGAAGACCACCACCAGCCATGCTTGCTGTT...GTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCCCACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR-3UTR TCA 90 bp GGGCATACGTTTATTCTTGTGCACAAACCAAAGAATTATGACACCCAATACTGCAAGCTTGCCTTACAGTaGGTGACCATTTTGCCTGAG +
Preference number: 2 (lower is better)
Translates to: GHTFILVHKPKNYDTQYCKLALQ*VTILPE
Trigger: CTCAGGCAAAATGGTCACTCACTGTAAGGCAAGCTT...GCAGTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR-3UTR GCA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTGGTCACTTTACAGTGTaGTTTTTACCTAACACTAAA +
Preference number: 2 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISGHFTV*FLPNTK
Trigger: TTTAGTGTTAGGTAAAAAGCACACTGTAAAGTGACC...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR-3UTR GCA 90 bp TGTGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGGTCACTTTACAGTGTaGTTTTTACCTAACACTAAA +
Preference number: 2 (lower is better)
Translates to: CAHISTCYRHSSLRSFSVGHFTV*FLPNTK
Trigger: TTTAGTGTTAGGTAAAAAGCACACTGTAAAGTGACC...TACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR-3UTR CAA 90 bp TCTTCACGGAAGGACAGTCCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATGGAGGATGGAGGGGCTaGGGACACAGTTCAGCCTCT +
Preference number: 3 (lower is better)
Translates to: SSRKDSPCPSGIRHEGLNGGWRG*GHSSAS
Trigger: AGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTCC...ATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGGACTGTCCTTCCGTGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR-3UTR CAA 90 bp TCTTCACGGAAGGACAGTCCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATCCTTGTTCCTGGCTTTaGCCTTGCTCTCCCCGCCAT +
Preference number: 3 (lower is better)
Translates to: SSRKDSPCPSGIRHEGLNPCSWL*PCSPRH
Trigger: ATGGCGGGGAGAGCAAGGCAAAAGCCAGGAACAAGG...ATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGGACTGTCCTTCCGTGAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR CCA 72 bp TTGGTTTCCAGGTCAAACAGCAAGCATGGCTGGTGGTaGTCTTCACGGAAGGACAGTCCTTGCCCTTCTGGG +
Preference number: 3 (lower is better)
Translates to: LVSRSNSKHGWW*SSRKDSPCPSG
Trigger: CCCAGAAGGGCAAGGACTGTCCTTCCGTGAAGACCACCACCAGCCATGCTTGCTGTTTGACCTGGAAACCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR TCA 72 bp ACGGAAGGACAGTCCTTGCCCTTCTGGGATCAGACATaGGGGCCTGAATCTGCAAAGCACTGGGCTTATACG +
Preference number: 3 (lower is better)
Translates to: TEGQSLPFWDQT*GPESAKHWAYT
Trigger: CGTATAAGCCCAGTGCTTTGCAGATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGGACTGTCCTTCCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR GCA 72 bp TTTCACTCATTCCAGCCTTGTTCCTGGCTTTTGCCTTaGTCTCCCCGCCATCCACTCTGGCTCTCTTCACCA +
Preference number: 3 (lower is better)
Translates to: FHSFQPCSWLLP*SPRHPLWLSSP
Trigger: TGGTGAAGAGAGCCAGAGTGGATGGCGGGGAGAGCAAGGCAAAAGCCAGGAACAAGGCTGGAATGAGTGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR GCA 72 bp TGGGCTTATACGGGTAGGGTAGAAAAGACCCATCCTTaGCCTTCTGGCCTTGAACTCAGAAATCCGCCTGCC +
Preference number: 3 (lower is better)
Translates to: WAYTGRVEKTHP*PSGLELRNPPA
Trigger: GGCAGGCGGATTTCTGAGTTCAAGGCCAGAAGGGCAAGGATGGGTCTTTTCTACCCTACCCGTATAAGCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR-3UTR CAA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTGGAGGATGGAGGGGCTaGGGACACAGTTCAGCCTCT +
Preference number: 3 (lower is better)
Translates to: DTLISQDAVHISLHATGTGGWRG*GHSSAS
Trigger: AGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTCC...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR TCA 72 bp CCTGCCTCTGCCTCTCAAGTGCTGGAATTAAAGGCGTaGGCCACCACCACCTGGCTACATAGTTTCTTGTTA +
Preference number: 3 (lower is better)
Translates to: PASASQVLELKA*ATTTWLHSFLL
Trigger: TAACAAGAAACTATGTAGCCAGGTGGTGGTGGCTCACGCCTTTAATTCCAGCACTTGAGAGGCAGAGGCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR TCA 72 bp GCACTCCTCTCTCAGGAGTTTTTCTGTAGTAGCTCTTaGCCCCCACAGGTCTTTCTGAAGCTATCTGACCCT +
Preference number: 3 (lower is better)
Translates to: ALLSQEFFCSSS*PPQVFLKLSDP
Trigger: AGGGTCAGATAGCTTCAGAAAGACCTGTGGGGGTCAAGAGCTACTACAGAAAAACTCCTGAGAGAGGAGTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR CCA 72 bp ACACTATCTCTGGCAATCGGCAATTGGCCTCAGATGTaGGGAGAAAGCCTAGGTAGGACAAAGCAGAAGAAA +
Preference number: 3 (lower is better)
Translates to: TLSLAIGNWPQM*GESLGRTKQKK
Trigger: TTTCTTCTGCTTTGTCCTACCTAGGCTTTCTCCCCACATCTGAGGCCAATTGCCGATTGCCAGAGATAGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR-3UTR CAA 90 bp TGTGGGCATACGTTTATTCTTGTGCACAAACCAAAGAATTATGACACCCAATACGGAGGATGGAGGGGCTaGGGACACAGTTCAGCCTCT +
Preference number: 3 (lower is better)
Translates to: CGHTFILVHKPKNYDTQYGGWRG*GHSSAS
Trigger: AGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTCC...GTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCCCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR-3UTR CAA 90 bp TGTGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAAAACCTCTCTTACCTTaGCCTCAAGAGAAGCACACA +
Preference number: 3 (lower is better)
Translates to: CAHISTCYRHSSLRSFSVKPLLP*PQEKHT
Trigger: TGTGTGCTTCTCTTGAGGCAAAGGTAAGAGAGGTTT...TACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR-3UTR CAA 90 bp CCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACAAAACCTCTCTTACCTTaGCCTCAAGAGAAGCACACA +
Preference number: 3 (lower is better)
Translates to: PSLVRHVDFTRCCAHISTKPLLP*PQEKHT
Trigger: TGTGTGCTTCTCTTGAGGCAAAGGTAAGAGAGGTTT...TGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR GCA 72 bp GTTGATTTCACAAGATGCTGTGCACATATCTCTACATaGTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTA +
Preference number: 3 (lower is better)
Translates to: VDFTRCCAHIST*YRHSSLRSFSV
Trigger: TACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR TCA 72 bp TTAGAAGCTTGCCTTACAGTGAGTGACCATTTTGCCTaGGATCTCAGTGGTCACTTTACAGTGTGCTTTTTA +
Preference number: 3 (lower is better)
Translates to: LEACLTVSDHFA*DLSGHFTVCFL
Trigger: TAAAAAGCACACTGTAAAGTGACCACTGAGATCTCAGGCAAAATGGTCACTCACTGTAAGGCAAGCTTCTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR-3UTR CAA 90 bp GGGCATACGTTTATTCTTGTGCACAAACCAAAGAATTATGACACCCAATACTGCTGGCTACATAGTTTCTaGTTAGCCAACTTTCCTCTC +
Preference number: 3 (lower is better)
Translates to: GHTFILVHKPKNYDTQYCWLHSF*LANFPL
Trigger: GAGAGGAAAGTTGGCTAACAAGAAACTATGTAGCCA...GCAGTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR GCA 72 bp GTCACTTTACAGTGTGCTTTTTACCTAACACTAAAGTaGTGCCCACAGAGAGAAACACAAATGCAAAAGGAA +
Preference number: 3 (lower is better)
Translates to: VTLQCAFYLTLK*CPQRETQMQKE
Trigger: TTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTAAAAAGCACACTGTAAAGTGAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
3UTR TCA 72 bp GCATACGTTTATTCTTGTGCACAAACCAAAGAATTATaGCACCCAATACTGCAAAATACTGCAAAGGAAAAG +
Preference number: 3 (lower is better)
Translates to: AYVYSCAQTKEL*HPILQNTAKEK
Trigger: CTTTTCCTTTGCAGTATTTTGCAGTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp CCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATCTGCAAAGCACTGGGCTTCCTGCAGGATGCCGGTaGGGGCAGCCGGCACAGAGA +
Preference number: 4 (lower is better)
Translates to: PCPSGIRHEGLNLQSTGLPAGCR*GQPAQR
Trigger: TCTCTGTGCCGGCTGCCCGCACCGGCATCCTGCAGG...AAGCCCAGTGCTTTGCAGATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp TCTTCACGGAAGGACAGTCCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATTCCCCGCCCCTCCCTTaGAGCCTTGGCGGCTCAGGG +
Preference number: 4 (lower is better)
Translates to: SSRKDSPCPSGIRHEGLNSPPLP*SLGGSG
Trigger: CCCTGAGCCGCCAAGGCTGCAAGGGAGGGGCGGGGA...ATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGGACTGTCCTTCCGTGAAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp CCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATCTGCAAAGCACTGGGCTTGGCACAGAGATGCGCTaGTCCCGAACGCTGGCAGGC +
Preference number: 4 (lower is better)
Translates to: PCPSGIRHEGLNLQSTGLGTEMR*SRTLAG
Trigger: GCCTGCCAGCGTTCGGGAGCAGCGCATCTCTGTGCC...AAGCCCAGTGCTTTGCAGATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp GATTCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGCCAGGCCGGAACATCTaGTTGCGGGTGCCCCGGCGC +
Preference number: 4 (lower is better)
Translates to: DSDVLSTGPWLLTSCNPRPGRNI*LRVPRR
Trigger: GCGCCGGGGCACCCGCAAGCAGATGTTCCGGCCTGG...CCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGAATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAAGCTGCTCCCGAACGCTaGCAGGCTCGGGGACCGCGG +
Preference number: 4 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKAAPER*QARGPR
Trigger: CCGCGGTCCCCGAGCCTGCCAGCGTTCGGGAGCAGC...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp CCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATCTGCAAAGCACTGGGCTTGTTAGGGACAGGGGTTaGGGCCAGCTCTGCCCTCCA +
Preference number: 4 (lower is better)
Translates to: PCPSGIRHEGLNLQSTGLVRDRG*GQLCPP
Trigger: TGGAGGGCAGAGCTGGCCTCAACCCCTGTCCCTAAC...AAGCCCAGTGCTTTGCAGATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp TCTTCACGGAAGGACAGTCCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATCCCTGTTCTGGTGGCTaGGAACCGGGGCCTGGCTAC +
Preference number: 4 (lower is better)
Translates to: SSRKDSPCPSGIRHEGLNPCSGG*EPGPGY
Trigger: GTAGCCAGGCCCCGGTTCTCAGCCACCAGAACAGGG...ATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGGACTGTCCTTCCGTGAAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp GAGGATGGAGGGGCTTGGGACACAGTTCAGCCTCTTAGAAGCTTGCCTTACAGTCCCTGTTCTGGTGGCTaGGAACCGGGGCCTGGCTAC +
Preference number: 4 (lower is better)
Translates to: EDGGAWDTVQPLRSLPYSPCSGG*EPGPGY
Trigger: GTAGCCAGGCCCCGGTTCTCAGCCACCAGAACAGGG...ACTGTAAGGCAAGCTTCTAAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp TCTTCACGGAAGGACAGTCCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATGGCACAGAGATGCGCTaGTCCCGAACGCTGGCAGGC +
Preference number: 4 (lower is better)
Translates to: SSRKDSPCPSGIRHEGLNGTEMR*SRTLAG
Trigger: GCCTGCCAGCGTTCGGGAGCAGCGCATCTCTGTGCC...ATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGGACTGTCCTTCCGTGAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp CAAATGCAAAAGGAAAACAGAGACCTGCTGAGACCTCTGGGTGGAGAAGCCAGACGGCGCCTAGCCTCCTaGAGGATGCCGGTGCGGGCA +
Preference number: 4 (lower is better)
Translates to: QMQKENRDLLRPLGGEARRRLAS*RMPVRA
Trigger: TGCCCGCACCGGCATCCTGCAGGAGGCTAGGCGCCG...TCTGGCTTCTCCACCCAGAGGTCTCAGCAGGTCTCTGTTTTCCTTTTGCATTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GATTCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGCCAGCTCCTGGGAGCTaGAGGCTACCCGCTGGCGCT +
Preference number: 4 (lower is better)
Translates to: DSDVLSTGPWLLTSCNPRPAPGS*RLPAGA
Trigger: AGCGCCAGCGGGTAGCCTCCAGCTCCCAGGAGCTGG...CCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGAATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp GATTCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGCCCTGTTCTGGTGGCTaGGAACCGGGGCCTGGCTAC +
Preference number: 4 (lower is better)
Translates to: DSDVLSTGPWLLTSCNPRPCSGG*EPGPGY
Trigger: GTAGCCAGGCCCCGGTTCTCAGCCACCAGAACAGGG...CCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGAATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAACCTGCAGGATGCCGGTaGGGGCAGCCGGCACAGAGA +
Preference number: 4 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKPAGCR*GQPAQR
Trigger: TCTCTGTGCCGGCTGCCCGCACCGGCATCCTGCAGG...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GAGGATGGAGGGGCTTGGGACACAGTTCAGCCTCTTAGAAGCTTGCCTTACAGTCACGGCTCTGCCGTTTaGCAAATAGCTCCCCGCCCC +
Preference number: 4 (lower is better)
Translates to: EDGGAWDTVQPLRSLPYSHGSAV*QIAPRP
Trigger: GGGGCGGGGAGCTATTTGCCAAACGGCAGAGCCGTG...ACTGTAAGGCAAGCTTCTAAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp GAGGATGGAGGGGCTTGGGACACAGTTCAGCCTCTTAGAAGCTTGCCTTACAGTACCATAGGGATGAGATaGGGGCCAGGCCGGAGTGGA +
Preference number: 4 (lower is better)
Translates to: EDGGAWDTVQPLRSLPYSTIGMR*GPGRSG
Trigger: TCCACTCCGGCCTGGCCCTCATCTCATCCCTATGGT...ACTGTAAGGCAAGCTTCTAAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR TCA 90 bp GATTCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAGGCTGCGGGCGTCTaGGAAGGTCTCCTCGTCCAG +
Preference number: 4 (lower is better)
Translates to: DSDVLSTGPWLLTSCNPRKAAGV*EGLLVQ
Trigger: CTGGACGAGGAGACCTTCTCAGACGCCCGCAGCCTT...CCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGAATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp CAAATGCAAAAGGAAAACAGAGACCTGCTGAGACCTCTGGGTGGAGAAGCCAGACCCGGAGTCCTGCTCTaGCAGCCTGGCTCCGTCTTC +
Preference number: 4 (lower is better)
Translates to: QMQKENRDLLRPLGGEARPGVLL*QPGSVF
Trigger: GAAGACGGAGCCAGGCTGGCAGAGCAGGACTCCGGG...TCTGGCTTCTCCACCCAGAGGTCTCAGCAGGTCTCTGTTTTCCTTTTGCATTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR GCA 90 bp GAGGATGGAGGGGCTTGGGACACAGTTCAGCCTCTTAGAAGCTTGCCTTACAGTGCTACCCGCTGGCGCTaGTGTTCAAAGAGCTGGACC +
Preference number: 4 (lower is better)
Translates to: EDGGAWDTVQPLRSLPYSATRWR*CSKSWT
Trigger: GGTCCAGCTCTTTGAACAGCAGCGCCAGCGGGTAGC...ACTGTAAGGCAAGCTTCTAAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp GATTCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGGGGGGTAGGGCTGACTaGAGGGACCGACAAAGGGCT +
Preference number: 4 (lower is better)
Translates to: DSDVLSTGPWLLTSCNPRGGRAD*RDRQRA
Trigger: AGCCCTTTGTCGGTCCCTGCAGTCAGCCCTACCCCC...CCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGAATC
57% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GATTCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGCAGAAGTGCCTCTGCTaGTGGGGGCTGAAGGGCTGC +
Preference number: 4 (lower is better)
Translates to: DSDVLSTGPWLLTSCNPRQKCLC*WGLKGC
Trigger: GCAGCCCTTCAGCCCCCACCAGCAGAGGCACTTCTG...CCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGAATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTGCTGCTCCCGAACGCTaGCAGGCTCGGGGACCGCGG +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTAAPER*QARGPR
Trigger: CCGCGGTCCCCGAGCCTGCCAGCGTTCGGGAGCAGC...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTGCTGCTCCCGAACGCTaGCAGGCTCGGGGACCGCGG +
Preference number: 4 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISAAPER*QARGPR
Trigger: CCGCGGTCCCCGAGCCTGCCAGCGTTCGGGAGCAGC...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp CAAATGCAAAAGGAAAACAGAGACCTGCTGAGACCTCTGGGTGGAGAAGCCAGACCAAGGGCTCTGCAGTaGGCTGGGGTGCAGGAGTGG +
Preference number: 4 (lower is better)
Translates to: QMQKENRDLLRPLGGEARPRALQ*AGVQEW
Trigger: CCACTCCTGCACCCCAGCCCACTGCAGAGCCCTTGG...TCTGGCTTCTCCACCCAGAGGTCTCAGCAGGTCTCTGTTTTCCTTTTGCATTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GAGGATGGAGGGGCTTGGGACACAGTTCAGCCTCTTAGAAGCTTGCCTTACAGTCCAGGCCTCCAGACATaGGCCTGCAACCCTGTTCTG +
Preference number: 4 (lower is better)
Translates to: EDGGAWDTVQPLRSLPYSPGLQT*ACNPVL
Trigger: CAGAACAGGGTTGCAGGCCCATGTCTGGAGGCCTGG...ACTGTAAGGCAAGCTTCTAAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp CAAATGCAAAAGGAAAACAGAGACCTGCTGAGACCTCTGGGTGGAGAAGCCAGAAAGGCTGCGGGCGTCTaGGAAGGTCTCCTCGTCCAG +
Preference number: 4 (lower is better)
Translates to: QMQKENRDLLRPLGGEARKAAGV*EGLLVQ
Trigger: CTGGACGAGGAGACCTTCTCAGACGCCCGCAGCCTT...TCTGGCTTCTCCACCCAGAGGTCTCAGCAGGTCTCTGTTTTCCTTTTGCATTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp GAGGATGGAGGGGCTTGGGACACAGTTCAGCCTCTTAGAAGCTTGCCTTACAGTCTGTCCCAGTCGGATTaGTTAGTAAGGCTGCGGGCG +
Preference number: 4 (lower is better)
Translates to: EDGGAWDTVQPLRSLPYSLSQSD*LVRLRA
Trigger: CGCCCGCAGCCTTACTAATCAATCCGACTGGGACAG...ACTGTAAGGCAAGCTTCTAAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp CAAATGCAAAAGGAAAACAGAGACCTGCTGAGACCTCTGGGTGGAGAAGCCAGAGGGGGTAGGGCTGACTaGAGGGACCGACAAAGGGCT +
Preference number: 4 (lower is better)
Translates to: QMQKENRDLLRPLGGEARGGRAD*RDRQRA
Trigger: AGCCCTTTGTCGGTCCCTGCAGTCAGCCCTACCCCC...TCTGGCTTCTCCACCCAGAGGTCTCAGCAGGTCTCTGTTTTCCTTTTGCATTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAAGGGGGTAGGGCTGACTaGAGGGACCGACAAAGGGCT +
Preference number: 4 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKGGRAD*RDRQRA
Trigger: AGCCCTTTGTCGGTCCCTGCAGTCAGCCCTACCCCC...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp TGTGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTACGGCGCCTAGCCTCCTaGAGGATGCCGGTGCGGGCA +
Preference number: 4 (lower is better)
Translates to: CAHISTCYRHSSLRSFSVRRLAS*RMPVRA
Trigger: TGCCCGCACCGGCATCCTGCAGGAGGCTAGGCGCCG...TACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp CCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACACGGCGCCTAGCCTCCTaGAGGATGCCGGTGCGGGCA +
Preference number: 4 (lower is better)
Translates to: PSLVRHVDFTRCCAHISTRRLAS*RMPVRA
Trigger: TGCCCGCACCGGCATCCTGCAGGAGGCTAGGCGCCG...TGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp GTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCTCTCCAGGCCGGAACATCTaGTTGCGGGTGCCCCGGCGC +
Preference number: 4 (lower is better)
Translates to: VDFTRCCAHISTCYRHSSPGRNI*LRVPRR
Trigger: GCGCCGGGGCACCCGCAAGCAGATGTTCCGGCCTGG...AGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp CCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACACCAGGCCGGAACATCTaGTTGCGGGTGCCCCGGCGC +
Preference number: 4 (lower is better)
Translates to: PSLVRHVDFTRCCAHISTPGRNI*LRVPRR
Trigger: GCGCCGGGGCACCCGCAAGCAGATGTTCCGGCCTGG...TGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp GTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCTCTTCCCCGCCCCTCCCTTaGAGCCTTGGCGGCTCAGGG +
Preference number: 4 (lower is better)
Translates to: VDFTRCCAHISTCYRHSSSPPLP*SLGGSG
Trigger: CCCTGAGCCGCCAAGGCTGCAAGGGAGGGGCGGGGA...AGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp CCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATCCCCGCCCCTCCCTTaGAGCCTTGGCGGCTCAGGG +
Preference number: 4 (lower is better)
Translates to: PSLVRHVDFTRCCAHISTSPPLP*SLGGSG
Trigger: CCCTGAGCCGCCAAGGCTGCAAGGGAGGGGCGGGGA...TGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp GAGGATGGAGGGGCTTGGGACACAGTTCAGCCTCTTAGAAGCTTGCCTTACAGTCTCCAGACATGGGCCTaGAACCCTGTTCTGGTGGCT +
Preference number: 4 (lower is better)
Translates to: EDGGAWDTVQPLRSLPYSLQTWA*NPVLVA
Trigger: AGCCACCAGAACAGGGTTGCAGGCCCATGTCTGGAG...ACTGTAAGGCAAGCTTCTAAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GAGGATGGAGGGGCTTGGGACACAGTTCAGCCTCTTAGAAGCTTGCCTTACAGTACACGGCTGTCGCCCTaGCTGGGAGAGCCAGTTTTA +
Preference number: 4 (lower is better)
Translates to: EDGGAWDTVQPLRSLPYSTRLSP*LGEPVL
Trigger: TAAAACTGGCTCTCCCAGCCAGGGCGACAGCCGTGT...ACTGTAAGGCAAGCTTCTAAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp GAGGATGGAGGGGCTTGGGACACAGTTCAGCCTCTTAGAAGCTTGCCTTACAGTTGCTGTTCAAAGAGCTaGACCCCTCGCCCAGAGACC +
Preference number: 4 (lower is better)
Translates to: EDGGAWDTVQPLRSLPYSCCSKS*TPRPET
Trigger: GGTCTCTGGGCGAGGGGTCCAGCTCTTTGAACAGCA...ACTGTAAGGCAAGCTTCTAAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAAGAGCACAGCTGCCTCTaGGGGAGCACTCTGTGCTCG +
Preference number: 4 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKEHSCL*GSTLCS
Trigger: CGAGCACAGAGTGCTCCCCCAGAGGCAGCTGTGCTC...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GAGGATGGAGGGGCTTGGGACACAGTTCAGCCTCTTAGAAGCTTGCCTTACAGTAGAAGATGGAAGCGGTaGAGGTCATGGCAGCAGCGC +
Preference number: 4 (lower is better)
Translates to: EDGGAWDTVQPLRSLPYSRRWKR*RSWQQR
Trigger: GCGCTGCTGCCATGACCTCCACCGCTTCCATCTTCT...ACTGTAAGGCAAGCTTCTAAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp CCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATCTGCAAAGCACTGGGCTTACAGCAGCTCCGGGTTaGGCGAGTTCTTCGTCTCTT +
Preference number: 4 (lower is better)
Translates to: PCPSGIRHEGLNLQSTGLTAAPG*ASSSSL
Trigger: AAGAGACGAAGAACTCGCCCAACCCGGAGCTGCTGT...AAGCCCAGTGCTTTGCAGATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGCCAAGGGCTCTGCAGTaGGCTGGGGTGCAGGAGTGG +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERPRALQ*AGVQEW
Trigger: CCACTCCTGCACCCCAGCCCACTGCAGAGCCCTTGG...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TCTTCACGGAAGGACAGTCCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATCGGGGCCTGGCTACTTaGAAACCACAGGAACTGGGA +
Preference number: 4 (lower is better)
Translates to: SSRKDSPCPSGIRHEGLNRGLAT*KPQELG
Trigger: TCCCAGTTCCTGTGGTTTCCAAGTAGCCAGGCCCCG...ATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGGACTGTCCTTCCGTGAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
3UTR CAA 72 bp GGTCACTTTCACTCATTCCAGCCTTGTTCCTGGCTTTaGCCTTGCTCTCCCCGCCATCCACTCTGGCTCTCT +
Preference number: 4 (lower is better)
Translates to: GHFHSFQPCSWL*PCSPRHPLWLS
Trigger: AGAGAGCCAGAGTGGATGGCGGGGAGAGCAAGGCAAAAGCCAGGAACAAGGCTGGAATGAGTGAAAGTGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp GAGGATGGAGGGGCTTGGGACACAGTTCAGCCTCTTAGAAGCTTGCCTTACAGTTGCAAGAAACCCCGTTaGTCGCTAAGAGCTGGTCCC +
Preference number: 4 (lower is better)
Translates to: EDGGAWDTVQPLRSLPYSCKKPR*SLRAGP
Trigger: GGGACCAGCTCTTAGCGATCAACGGGGTTTCTTGCA...ACTGTAAGGCAAGCTTCTAAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR TCA 90 bp GATTCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGGGCACGGATGTTGGGTaGGTATTTCCAGGATGGGGG +
Preference number: 4 (lower is better)
Translates to: DSDVLSTGPWLLTSCNPRGTDVG*VFPGWG
Trigger: CCCCCATCCTGGAAATACTCACCCAACATCCGTGCC...CCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGAATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp CCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATCTGCAAAGCACTGGGCTTAATCTGCGGATCTCCTaGACTCGGGCAGTTTTGGGA +
Preference number: 4 (lower is better)
Translates to: PCPSGIRHEGLNLQSTGLNLRIS*TRAVLG
Trigger: TCCCAAAACTGCCCGAGTTCAGGAGATCCGCAGATT...AAGCCCAGTGCTTTGCAGATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGGTTAGGGACAGGGGTTaGGGCCAGCTCTGCCCTCCA +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERVRDRG*GQLCPP
Trigger: TGGAGGGCAGAGCTGGCCTCAACCCCTGTCCCTAAC...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCTCTCCCGGAGTCCTaGTCTGCCAGCCTGGCTCCG +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTPLPES*SASLAP
Trigger: CGGAGCCAGGCTGGCAGAGCAGGACTCCGGGAGAGG...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAACCTTGGAGTGAGGGTTaGGGGCTGCTGTTAGCAGGG +
Preference number: 4 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKPWSEG*GLLLAG
Trigger: CCCTGCTAACAGCAGCCCCCAACCCTCACTCCAAGG...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp CAAATGCAAAAGGAAAACAGAGACCTGCTGAGACCTCTGGGTGGAGAAGCCAGACCTTGGAGTGAGGGTTaGGGGCTGCTGTTAGCAGGG +
Preference number: 4 (lower is better)
Translates to: QMQKENRDLLRPLGGEARPWSEG*GLLLAG
Trigger: CCCTGCTAACAGCAGCCCCCAACCCTCACTCCAAGG...TCTGGCTTCTCCACCCAGAGGTCTCAGCAGGTCTCTGTTTTCCTTTTGCATTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGCTCCGACTCACTCGTTaGGGGGATGCCGTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERLRLTR*GDAVLL
Trigger: GAGGAGGACGGCATCCCCCCAACGAGTGAGTCGGAG...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp CAAATGCAAAAGGAAAACAGAGACCTGCTGAGACCTCTGGGTGGAGAAGCCAGACTGGAGGCTACCCGCTaGCGCTGCTGTTCAAAGAGC +
Preference number: 4 (lower is better)
Translates to: QMQKENRDLLRPLGGEARLEATR*RCCSKS
Trigger: GCTCTTTGAACAGCAGCGCCAGCGGGTAGCCTCCAG...TCTGGCTTCTCCACCCAGAGGTCTCAGCAGGTCTCTGTTTTCCTTTTGCATTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGTCCAGCTCCTGGGAGCTaGAGGCTACCCGCTGGCGCT +
Preference number: 4 (lower is better)
Translates to: CTYLYMLQALLSQEFFCSPAPGS*RLPAGA
Trigger: AGCGCCAGCGGGTAGCCTCCAGCTCCCAGGAGCTGG...ACTACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAAGGACCAGAGGAGCGTTaGGTGCTGCTAGAAGCCCCA +
Preference number: 4 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKGPEER*VLLEAP
Trigger: TGGGGCTTCTAGCAGCACCCAACGCTCCTCTGGTCC...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GATTCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAGAAGATGGAAGCGGTaGAGGTCATGGCAGCAGCGC +
Preference number: 4 (lower is better)
Translates to: DSDVLSTGPWLLTSCNPRRRWKR*RSWQQR
Trigger: GCGCTGCTGCCATGACCTCCACCGCTTCCATCTTCT...CCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGAATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GAGGATGGAGGGGCTTGGGACACAGTTCAGCCTCTTAGAAGCTTGCCTTACAGTACAGCAGCTCCGGGTTaGGCGAGTTCTTCGTCTCTT +
Preference number: 4 (lower is better)
Translates to: EDGGAWDTVQPLRSLPYSTAAPG*ASSSSL
Trigger: AAGAGACGAAGAACTCGCCCAACCCGGAGCTGCTGT...ACTGTAAGGCAAGCTTCTAAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGGCAACCCTGTTCTGGTaGCTGAGAACCGGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERATLFW*LRTGAW
Trigger: CCAGGCCCCGGTTCTCAGCCACCAGAACAGGGTTGC...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAACGAAGGCTTGTGGGCTaGAGAGCCTGGGAAACAGGA +
Preference number: 4 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKRRLVG*RAWETG
Trigger: TCCTGTTTCCCAGGCTCTTCAGCCCACAAGCCTTCG...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR TCA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAACCCCTAGTGGCTGCATaGAGTTACAGGCTTCAGCCC +
Preference number: 4 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKPLVAA*SYRLQP
Trigger: GGGCTGAAGCCTGTAACTTCATGCAGCCACTAGGGG...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp GAATCTGCAAAGCACTGGGCTTATACGGGTAGGGTAGAAAAGACCCATCCTTGCCGAGGCCCCTGGGATTaGGCCTTATTGGGGAGAGTT +
Preference number: 4 (lower is better)
Translates to: ESAKHWAYTGRVEKTHPCRGPWD*ALLGRV
Trigger: AACTCTCCCCAATAAGGCTCAATCCCAGGGGCCTCG...GCAAGGATGGGTCTTTTCTACCCTACCCGTATAAGCCCAGTGCTTTGCAGATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp GAGGATGGAGGGGCTTGGGACACAGTTCAGCCTCTTAGAAGCTTGCCTTACAGTAATCTGCGGATCTCCTaGACTCGGGCAGTTTTGGGA +
Preference number: 4 (lower is better)
Translates to: EDGGAWDTVQPLRSLPYSNLRIS*TRAVLG
Trigger: TCCCAAAACTGCCCGAGTTCAGGAGATCCGCAGATT...ACTGTAAGGCAAGCTTCTAAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp GTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCTCTCCCGGAGTCCTGCTCTaGCAGCCTGGCTCCGTCTTC +
Preference number: 4 (lower is better)
Translates to: VDFTRCCAHISTCYRHSSPGVLL*QPGSVF
Trigger: GAAGACGGAGCCAGGCTGGCAGAGCAGGACTCCGGG...AGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR GCA 90 bp GAGGATGGAGGGGCTTGGGACACAGTTCAGCCTCTTAGAAGCTTGCCTTACAGTGCCAGTTTTAACAGGTaGTGGTTCTGCAGGGCTGTC +
Preference number: 4 (lower is better)
Translates to: EDGGAWDTVQPLRSLPYSASFNR*WFCRAV
Trigger: GACAGCCCTGCAGAACCAGCACCTGTTAAAACTGGC...ACTGTAAGGCAAGCTTCTAAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR GCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGGCTACCCGCTGGCGCTaGTGTTCAAAGAGCTGGACC +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERATRWR*CSKSWT
Trigger: GGTCCAGCTCTTTGAACAGCAGCGCCAGCGGGTAGC...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp GAATCTGCAAAGCACTGGGCTTATACGGGTAGGGTAGAAAAGACCCATCCTTGCGCTCGAGGTGGGGACTaGAGACTCTGCCCATTAAGC +
Preference number: 4 (lower is better)
Translates to: ESAKHWAYTGRVEKTHPCARGGD*RLCPLS
Trigger: GCTTAATGGGCAGAGTCTGCAGTCCCCACCTCGAGC...GCAAGGATGGGTCTTTTCTACCCTACCCGTATAAGCCCAGTGCTTTGCAGATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp TCTTCACGGAAGGACAGTCCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATGTTAAAGATACTTGGTaGAGGGATGGGGGCTCCACC +
Preference number: 4 (lower is better)
Translates to: SSRKDSPCPSGIRHEGLNVKDTW*RDGGST
Trigger: GGTGGAGCCCCCATCCCTGCACCAAGTATCTTTAAC...ATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGGACTGTCCTTCCGTGAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTGGCACAGAGATGCGCTaGTCCCGAACGCTGGCAGGC +
Preference number: 4 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISGTEMR*SRTLAG
Trigger: GCCTGCCAGCGTTCGGGAGCAGCGCATCTCTGTGCC...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTCAGCCGGCACAGAGATaGGCTGCTCCCGAACGCTGG +
Preference number: 4 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISQPAQR*AAPERW
Trigger: CCAGCGTTCGGGAGCAGCGCATCTCTGTGCCGGCTG...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp TGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGTCAGCCGGCACAGAGATaGGCTGCTCCCGAACGCTGG +
Preference number: 4 (lower is better)
Translates to: CTYLYMLQALLSQEFFCSQPAQR*AAPERW
Trigger: CCAGCGTTCGGGAGCAGCGCATCTCTGTGCCGGCTG...ACTACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp CCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACACAGCCGGCACAGAGATaGGCTGCTCCCGAACGCTGG +
Preference number: 4 (lower is better)
Translates to: PSLVRHVDFTRCCAHISTQPAQR*AAPERW
Trigger: CCAGCGTTCGGGAGCAGCGCATCTCTGTGCCGGCTG...TGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp CAAATGCAAAAGGAAAACAGAGACCTGCTGAGACCTCTGGGTGGAGAAGCCAGACTCCAGACATGGGCCTaGAACCCTGTTCTGGTGGCT +
Preference number: 4 (lower is better)
Translates to: QMQKENRDLLRPLGGEARLQTWA*NPVLVA
Trigger: AGCCACCAGAACAGGGTTGCAGGCCCATGTCTGGAG...TCTGGCTTCTCCACCCAGAGGTCTCAGCAGGTCTCTGTTTTCCTTTTGCATTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp GAATCTGCAAAGCACTGGGCTTATACGGGTAGGGTAGAAAAGACCCATCCTTGCCTCCAGACATGGGCCTaGAACCCTGTTCTGGTGGCT +
Preference number: 4 (lower is better)
Translates to: ESAKHWAYTGRVEKTHPCLQTWA*NPVLVA
Trigger: AGCCACCAGAACAGGGTTGCAGGCCCATGTCTGGAG...GCAAGGATGGGTCTTTTCTACCCTACCCGTATAAGCCCAGTGCTTTGCAGATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAAGTACACCTCATCAGGTaGGGCTCCTGGAAGGGAAGG +
Preference number: 4 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKVHLIR*GSWKGR
Trigger: CCTTCCCTTCCAGGAGCCCCACCTGATGAGGTGTAC...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTAAGTGCCTCTGCTGGTaGGGGCTGAAGGGCTGCCCC +
Preference number: 4 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISKCLCW*GLKGCP
Trigger: GGGGCAGCCCTTCAGCCCCCACCAGCAGAGGCACTT...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAACTGCGCGTTGCAGTTTaGCTTGCTTGGCCTTCTGGG +
Preference number: 4 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKLRVAV*LAWPSG
Trigger: CCCAGAAGGCCAAGCAAGCCAAACTGCAACGCGCAG...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGTACTTGGTGCAGGGATaGGGGCTCCACCATCCGGGA +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERYLVQG*GLHHPG
Trigger: TCCCGGATGGTGGAGCCCCCATCCCTGCACCAAGTA...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TCTTCACGGAAGGACAGTCCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATCCTGTTAAAGATACTTaGTGCAGGGATGGGGGCTCC +
Preference number: 4 (lower is better)
Translates to: SSRKDSPCPSGIRHEGLNPVKDT*CRDGGS
Trigger: GGAGCCCCCATCCCTGCACCAAGTATCTTTAACAGG...ATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGGACTGTCCTTCCGTGAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GAGGATGGAGGGGCTTGGGACACAGTTCAGCCTCTTAGAAGCTTGCCTTACAGTGTGGGGCACGGATGTTaGGTGAGTATTTCCAGGATG +
Preference number: 4 (lower is better)
Translates to: EDGGAWDTVQPLRSLPYSVGHGC*VSISRM
Trigger: CATCCTGGAAATACTCACCCAACATCCGTGCCCCAC...ACTGTAAGGCAAGCTTCTAAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GAGGATGGAGGGGCTTGGGACACAGTTCAGCCTCTTAGAAGCTTGCCTTACAGTGGGATTGAGCCTTATTaGGGAGAGTTCGGGCAGCTT +
Preference number: 4 (lower is better)
Translates to: EDGGAWDTVQPLRSLPYSGIEPY*GEFGQL
Trigger: AAGCTGCCCGAACTCTCCCCAATAAGGCTCAATCCC...ACTGTAAGGCAAGCTTCTAAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp CAAATGCAAAAGGAAAACAGAGACCTGCTGAGACCTCTGGGTGGAGAAGCCAGATGGGAGGCCCTGAAGTaGGGCCAGGAGTTGAAGAAC +
Preference number: 4 (lower is better)
Translates to: QMQKENRDLLRPLGGEARWEALK*GQELKN
Trigger: GTTCTTCAACTCCTGGCCCCACTTCAGGGCCTCCCA...TCTGGCTTCTCCACCCAGAGGTCTCAGCAGGTCTCTGTTTTCCTTTTGCATTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGGAACTCGGGCAGTTTTaGGAGGCCCTGAAGTGGGGC +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERELGQF*EALKWG
Trigger: GCCCCACTTCAGGGCCTCCCAAAACTGCCCGAGTTC...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GAATCTGCAAAGCACTGGGCTTATACGGGTAGGGTAGAAAAGACCCATCCTTGCGGCTCTGCAGTGGGCTaGGGTGCAGGAGTGGAAAAT +
Preference number: 4 (lower is better)
Translates to: ESAKHWAYTGRVEKTHPCGSAVG*GAGVEN
Trigger: ATTTTCCACTCCTGCACCCCAGCCCACTGCAGAGCC...GCAAGGATGGGTCTTTTCTACCCTACCCGTATAAGCCCAGTGCTTTGCAGATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCTCTCCAAGGGCTCTGCAGTaGGCTGGGGTGCAGGAGTGG +
Preference number: 4 (lower is better)
Translates to: VDFTRCCAHISTCYRHSSPRALQ*AGVQEW
Trigger: CCACTCCTGCACCCCAGCCCACTGCAGAGCCCTTGG...AGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAACCTGCTCTGCCAGCCTaGCTCCGTCTTCGGATCTTA +
Preference number: 4 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKPALPA*LRLRIL
Trigger: TAAGATCCGAAGACGGAGCCAGGCTGGCAGAGCAGG...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117386.2
CDS-3UTR TCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTAAGGCTGCGGGCGTCTaGGAAGGTCTCCTCGTCCAG +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTKAAGV*EGLLVQ
Trigger: CTGGACGAGGAGACCTTCTCAGACGCCCGCAGCCTT...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGCTGTCCCAGTCGGATTaGTTAGTAAGGCTGCGGGCG +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERLSQSD*LVRLRA
Trigger: CGCCCGCAGCCTTACTAATCAATCCGACTGGGACAG...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTGGACCGACAAAGGGCTaGGTGGGAGCACAGCTGCCT +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTGPTKG*VGAQLP
Trigger: AGGCAGCTGTGCTCCCACTCAGCCCTTTGTCGGTCC...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp TGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGTGGACCGACAAAGGGCTaGGTGGGAGCACAGCTGCCT +
Preference number: 4 (lower is better)
Translates to: CTYLYMLQALLSQEFFCSGPTKG*VGAQLP
Trigger: AGGCAGCTGTGCTCCCACTCAGCCCTTTGTCGGTCC...ACTACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp GATTCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGCTCCTGAGAGACTCTTaGTGGTCTGGGTTAGGGACA +
Preference number: 4 (lower is better)
Translates to: DSDVLSTGPWLLTSCNPRLLRDS*WSGLGT
Trigger: TGTCCCTAACCCAGACCATCAAGAGTCTCTCAGGAG...CCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGAATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAACGGCAGCAAAGCTCCTaGGAGACTCTTGATGGTCTG +
Preference number: 4 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKRQQSS*ETLDGL
Trigger: CAGACCATCAAGAGTCTCTCAGGAGCTTTGCTGCCG...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp CCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGGAAGGGAAGGCCTTaGAGGACCTCTGCGGCGGGT +
Preference number: 4 (lower is better)
Translates to: PSLVRHVDFTRCCAHISTWKGRP*RTSAAG
Trigger: ACCCGCCGCAGAGGTCCTGCAAGGCCTTCCCTTCCA...TGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR GCA 90 bp GTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCTCTTGGAAGGGAAGGCCTTaGAGGACCTCTGCGGCGGGT +
Preference number: 4 (lower is better)
Translates to: VDFTRCCAHISTCYRHSSWKGRP*RTSAAG
Trigger: ACCCGCCGCAGAGGTCCTGCAAGGCCTTCCCTTCCA...AGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR GCA 90 bp GAATCTGCAAAGCACTGGGCTTATACGGGTAGGGTAGAAAAGACCCATCCTTGCAGGCTTTCTGCGCGTTaGAGTTTGGCTTGCTTGGCC +
Preference number: 4 (lower is better)
Translates to: ESAKHWAYTGRVEKTHPCRLSAR*SLACLA
Trigger: GGCCAAGCAAGCCAAACTGCAACGCGCAGAAAGCCT...GCAAGGATGGGTCTTTTCTACCCTACCCGTATAAGCCCAGTGCTTTGCAGATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057090.12
CDS-3UTR GCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGGCTCGAGGTGGGGACTaGAGACTCTGCCCATTAAGC +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERARGGD*RLCPLS
Trigger: GCTTAATGGGCAGAGTCTGCAGTCCCCACCTCGAGC...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp CCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATCTGCAAAGCACTGGGCTTTTTTCATCCAGGTTCTaGACTAGTGACAGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: PCPSGIRHEGLNLQSTGLFSSRF*TSDSSS
Trigger: GGAGCTGCTGTCACTAGTGCAGAACCTGGATGAAAA...AAGCCCAGTGCTTTGCAGATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGG
52% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TCTTCACGGAAGGACAGTCCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATGTCATGGCACTGGCATaGGAGAAGTTGGTGCAAGAA +
Preference number: 4 (lower is better)
Translates to: SSRKDSPCPSGIRHEGLNVMALA*EKLVQE
Trigger: TTCTTGCACCAACTTCTCCCATGCCAGTGCCATGAC...ATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGGACTGTCCTTCCGTGAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057090.12
CDS-3UTR CCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGCCCTTCCTCCCAAGATaGGGAGCTTACACGGCTGTC +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERPFLPR*GAYTAV
Trigger: GACAGCCGTGTAAGCTCCCCATCTTGGGAGGAAGGG...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCAGAAGTGCCTCTGCTaGTGGGGGCTGAAGGGCTGC +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTQKCLC*WGLKGC
Trigger: GCAGCCCTTCAGCCCCCACCAGCAGAGGCACTTCTG...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp TGTGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGAGATCTTCTGCCACTaGGTGGGGGACAGGGCCCAC +
Preference number: 4 (lower is better)
Translates to: CAHISTCYRHSSLRSFSVEIFCH*VGDRAH
Trigger: GTGGGCCCTGTCCCCCACCCAGTGGCAGAAGATCTC...TACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp CCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATCTGCAAAGCACTGGGCTTTTAGCAGGGATGCAATaGTCCGGCATTTGGTTCTTG +
Preference number: 4 (lower is better)
Translates to: PCPSGIRHEGLNLQSTGLLAGMQ*SGIWFL
Trigger: CAAGAACCAAATGCCGGACCATTGCATCCCTGCTAA...AAGCCCAGTGCTTTGCAGATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp CAAATGCAAAAGGAAAACAGAGACCTGCTGAGACCTCTGGGTGGAGAAGCCAGACTAGGGTGTACTTCTTaGCTCTCTGCCGCCGCTTCT +
Preference number: 4 (lower is better)
Translates to: QMQKENRDLLRPLGGEARLGCTS*LSAAAS
Trigger: AGAAGCGGCGGCAGAGAGCCAAGAAGTACACCCTAG...TCTGGCTTCTCCACCCAGAGGTCTCAGCAGGTCTCTGTTTTCCTTTTGCATTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTCTCCGACTCACTCGTTaGGGGGATGCCGTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISLRLTR*GDAVLL
Trigger: GAGGAGGACGGCATCCCCCCAACGAGTGAGTCGGAG...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGTGCTGTTCAAAGAGCTaGACCCCTCGCCCAGAGACC +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERCCSKS*TPRPET
Trigger: GGTCTCTGGGCGAGGGGTCCAGCTCTTTGAACAGCA...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp CAAATGCAAAAGGAAAACAGAGACCTGCTGAGACCTCTGGGTGGAGAAGCCAGAATTAAGCATAGCTGCTaGGCCCACCTGAGCCAGCTC +
Preference number: 4 (lower is better)
Translates to: QMQKENRDLLRPLGGEARIKHSC*AHLSQL
Trigger: GAGCTGGCTCAGGTGGGCCCAGCAGCTATGCTTAAT...TCTGGCTTCTCCACCCAGAGGTCTCAGCAGGTCTCTGTTTTCCTTTTGCATTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGAGAAGATGGAAGCGGTaGAGGTCATGGCAGCAGCGC +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERRRWKR*RSWQQR
Trigger: GCGCTGCTGCCATGACCTCCACCGCTTCCATCTTCT...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCTCTCCTCCCTTGCAGCCTTaGCGGCTCAGGGATTCCCAC +
Preference number: 4 (lower is better)
Translates to: VDFTRCCAHISTCYRHSSPPLQP*RLRDSH
Trigger: GTGGGAATCCCTGAGCCGCCAAGGCTGCAAGGGAGG...AGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTCCTCCCTTGCAGCCTTaGCGGCTCAGGGATTCCCAC +
Preference number: 4 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISPPLQP*RLRDSH
Trigger: GTGGGAATCCCTGAGCCGCCAAGGCTGCAAGGGAGG...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTCACGGCTCTGCCGTTTaGCAAATAGCTCCCCGCCCC +
Preference number: 4 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISHGSAV*QIAPRP
Trigger: GGGGCGGGGAGCTATTTGCCAAACGGCAGAGCCGTG...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGTGGGAGGCCCTGAAGTaGGGCCAGGAGTTGAAGAAC +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERWEALK*GQELKN
Trigger: GTTCTTCAACTCCTGGCCCCACTTCAGGGCCTCCCA...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAAGCTGGGGTGCAGGAGTaGAAAATCTGCGGATCTCCT +
Preference number: 4 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKAGVQE*KICGSP
Trigger: AGGAGATCCGCAGATTTTCCACTCCTGCACCCCAGC...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGCTGAGAACCGGGGCCTaGCTACTTGGAAACCACAGG +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERLRTGA*LLGNHR
Trigger: CCTGTGGTTTCCAAGTAGCCAGGCCCCGGTTCTCAG...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTGCAACCCTGTTCTGGTaGCTGAGAACCGGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISATLFW*LRTGAW
Trigger: CCAGGCCCCGGTTCTCAGCCACCAGAACAGGGTTGC...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp CCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACAGCAACCCTGTTCTGGTaGCTGAGAACCGGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: PSLVRHVDFTRCCAHISTATLFW*LRTGAW
Trigger: CCAGGCCCCGGTTCTCAGCCACCAGAACAGGGTTGC...TGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp GTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCTCTCTCCCCCTGCTAATGTaGCCTGCACCTCCTCCTCAG +
Preference number: 4 (lower is better)
Translates to: VDFTRCCAHISTCYRHSSLPLLM*PAPPPQ
Trigger: CTGAGGAGGAGGTGCAGGTCACATTAGCAGGGGGAG...AGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR TCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCTCCCCCTGCTAATGTaGCCTGCACCTCCTCCTCAG +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTLPLLM*PAPPPQ
Trigger: CTGAGGAGGAGGTGCAGGTCACATTAGCAGGGGGAG...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR TCA 90 bp CAAATGCAAAAGGAAAACAGAGACCTGCTGAGACCTCTGGGTGGAGAAGCCAGACTCCTGAGAGACTCTTaGTGGTCTGGGTTAGGGACA +
Preference number: 4 (lower is better)
Translates to: QMQKENRDLLRPLGGEARLLRDS*WSGLGT
Trigger: TGTCCCTAACCCAGACCATCAAGAGTCTCTCAGGAG...TCTGGCTTCTCCACCCAGAGGTCTCAGCAGGTCTCTGTTTTCCTTTTGCATTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp GAGGATGGAGGGGCTTGGGACACAGTTCAGCCTCTTAGAAGCTTGCCTTACAGTCCGGCATTTGGTTCTTaGCTCCTTTACGCTTTTCTC +
Preference number: 4 (lower is better)
Translates to: EDGGAWDTVQPLRSLPYSPAFGS*LLYAFL
Trigger: GAGAAAAGCGTAAAGGAGGCAAGAACCAAATGCCGG...ACTGTAAGGCAAGCTTCTAAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGGAGACCTCACTTAGCTaGCCTCCCAGTCCAGAGTTC +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERETSLS*PPSPEF
Trigger: GAACTCTGGACTGGGAGGGCAGCTAAGTGAGGTCTC...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp CAAATGCAAAAGGAAAACAGAGACCTGCTGAGACCTCTGGGTGGAGAAGCCAGAGTTAAAGATACTTGGTaGAGGGATGGGGGCTCCACC +
Preference number: 4 (lower is better)
Translates to: QMQKENRDLLRPLGGEARVKDTW*RDGGST
Trigger: GGTGGAGCCCCCATCCCTGCACCAAGTATCTTTAAC...TCTGGCTTCTCCACCCAGAGGTCTCAGCAGGTCTCTGTTTTCCTTTTGCATTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp AGCACACATGTATGTGTATTTGATGTCTTTCTAGAGCAGATCCTAACCACACATCCTGCAGGATGCCGGTaGGGGCAGCCGGCACAGAGA +
Preference number: 4 (lower is better)
Translates to: STHVCVFDVFLEQILTTHPAGCR*GQPAQR
Trigger: TCTCTGTGCCGGCTGCCCGCACCGGCATCCTGCAGG...ATGTGTGGTTAGGATCTGCTCTAGAAAGACATCAAATACACATACATGTGTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TGTGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAATCAGGTGGGGCTCCTaGAAGGGAAGGCCTTGCAGG +
Preference number: 4 (lower is better)
Translates to: CAHISTCYRHSSLRSFSVIRWGS*KGRPCR
Trigger: CCTGCAAGGCCTTCCCTTCCAGGAGCCCCACCTGAT...TACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTTCTTCTGCCACTGGGTaGGGGACAGGGCCCACCATA +
Preference number: 4 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISSSATG*GTGPTI
Trigger: TATGGTGGGCCCTGTCCCCCACCCAGTGGCAGAAGA...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp TGTGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTACCTTGGAGTGAGGGTTaGGGGCTGCTGTTAGCAGGG +
Preference number: 4 (lower is better)
Translates to: CAHISTCYRHSSLRSFSVPWSEG*GLLLAG
Trigger: CCCTGCTAACAGCAGCCCCCAACCCTCACTCCAAGG...TACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCTCTCTGGAGGCTACCCGCTaGCGCTGCTGTTCAAAGAGC +
Preference number: 4 (lower is better)
Translates to: VDFTRCCAHISTCYRHSSLEATR*RCCSKS
Trigger: GCTCTTTGAACAGCAGCGCCAGCGGGTAGCCTCCAG...AGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TGTGGGCATACGTTTATTCTTGTGCACAAACCAAAGAATTATGACACCCAATACCCAGCTCCTGGGAGCTaGAGGCTACCCGCTGGCGCT +
Preference number: 4 (lower is better)
Translates to: CGHTFILVHKPKNYDTQYPAPGS*RLPAGA
Trigger: AGCGCCAGCGGGTAGCCTCCAGCTCCCAGGAGCTGG...GTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCCCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TGTGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTATACTTGGTGCAGGGATaGGGGCTCCACCATCCGGGA +
Preference number: 4 (lower is better)
Translates to: CAHISTCYRHSSLRSFSVYLVQG*GLHHPG
Trigger: TCCCGGATGGTGGAGCCCCCATCCCTGCACCAAGTA...TACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp CAAATGCAAAAGGAAAACAGAGACCTGCTGAGACCTCTGGGTGGAGAAGCCAGACCTGTTAAAGATACTTaGTGCAGGGATGGGGGCTCC +
Preference number: 4 (lower is better)
Translates to: QMQKENRDLLRPLGGEARPVKDT*CRDGGS
Trigger: GGAGCCCCCATCCCTGCACCAAGTATCTTTAACAGG...TCTGGCTTCTCCACCCAGAGGTCTCAGCAGGTCTCTGTTTTCCTTTTGCATTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAAGAGTGGACAAGAAGATaGAAGCGGTGGAGGTCATGG +
Preference number: 4 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKEWTRR*KRWRSW
Trigger: CCATGACCTCCACCGCTTCCATCTTCTTGTCCACTC...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp CAAATGCAAAAGGAAAACAGAGACCTGCTGAGACCTCTGGGTGGAGAAGCCAGAGAGTGGACAAGAAGATaGAAGCGGTGGAGGTCATGG +
Preference number: 4 (lower is better)
Translates to: QMQKENRDLLRPLGGEAREWTRR*KRWRSW
Trigger: CCATGACCTCCACCGCTTCCATCTTCTTGTCCACTC...TCTGGCTTCTCCACCCAGAGGTCTCAGCAGGTCTCTGTTTTCCTTTTGCATTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTGAACTCGGGCAGTTTTaGGAGGCCCTGAAGTGGGGC +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTELGQF*EALKWG
Trigger: GCCCCACTTCAGGGCCTCCCAAAACTGCCCGAGTTC...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGGCTGGGGTGCAGGAGTaGAAAATCTGCGGATCTCCT +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERAGVQE*KICGSP
Trigger: AGGAGATCCGCAGATTTTCCACTCCTGCACCCCAGC...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TGTGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTATGGGGACAAGCACAGTaGGAGCCAAGGGCTCTGCAG +
Preference number: 4 (lower is better)
Translates to: CAHISTCYRHSSLRSFSVWGQAQ*EPRALQ
Trigger: CTGCAGAGCCCTTGGCTCCCACTGTGCTTGTCCCCA...TACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCAGGCCTCCAGACATaGGCCTGCAACCCTGTTCTG +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTPGLQT*ACNPVL
Trigger: CAGAACAGGGTTGCAGGCCCATGTCTGGAGGCCTGG...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTCCAGGCCTCCAGACATaGGCCTGCAACCCTGTTCTG +
Preference number: 4 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISPGLQT*ACNPVL
Trigger: CAGAACAGGGTTGCAGGCCCATGTCTGGAGGCCTGG...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp GGGCATACGTTTATTCTTGTGCACAAACCAAAGAATTATGACACCCAATACTGCGCCCTGAGGCGTCGATaGGGGTCATGGCACTGGCAT +
Preference number: 4 (lower is better)
Translates to: GHTFILVHKPKNYDTQYCALRRR*GSWHWH
Trigger: ATGCCAGTGCCATGACCCTCATCGACGCCTCAGGGC...GCAGTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057090.12
CDS-3UTR TCA 90 bp TACCTAACACTAAAGTGCTGCCCACAGAGAGAAACACAAATGCAAAAGGAAAACGGACCGACAAAGGGCTaGGTGGGAGCACAGCTGCCT +
Preference number: 4 (lower is better)
Translates to: YLTLKCCPQRETQMQKENGPTKG*VGAQLP
Trigger: AGGCAGCTGTGCTCCCACTCAGCCCTTTGTCGGTCC...GTTTTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp GTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCTCTCCCCTAGTGGCTGCATaGAGTTACAGGCTTCAGCCC +
Preference number: 4 (lower is better)
Translates to: VDFTRCCAHISTCYRHSSPLVAA*SYRLQP
Trigger: GGGCTGAAGCCTGTAACTTCATGCAGCCACTAGGGG...AGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp CCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACAGGCACGGATGTTGGGTaGGTATTTCCAGGATGGGGG +
Preference number: 4 (lower is better)
Translates to: PSLVRHVDFTRCCAHISTGTDVG*VFPGWG
Trigger: CCCCCATCCTGGAAATACTCACCCAACATCCGTGCC...TGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp TGTGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGGCACGGATGTTGGGTaGGTATTTCCAGGATGGGGG +
Preference number: 4 (lower is better)
Translates to: CAHISTCYRHSSLRSFSVGTDVG*VFPGWG
Trigger: CCCCCATCCTGGAAATACTCACCCAACATCCGTGCC...TACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp CCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACACGAGGCCCCTGGGATTaGGCCTTATTGGGGAGAGTT +
Preference number: 4 (lower is better)
Translates to: PSLVRHVDFTRCCAHISTRGPWD*ALLGRV
Trigger: AACTCTCCCCAATAAGGCTCAATCCCAGGGGCCTCG...TGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp GTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCTCTCGAGGCCCCTGGGATTaGGCCTTATTGGGGAGAGTT +
Preference number: 4 (lower is better)
Translates to: VDFTRCCAHISTCYRHSSRGPWD*ALLGRV
Trigger: AACTCTCCCCAATAAGGCTCAATCCCAGGGGCCTCG...AGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp CCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACACCTGCTAATGTGACCTaGACCTCCTCCTCAGCACCC +
Preference number: 4 (lower is better)
Translates to: PSLVRHVDFTRCCAHISTPANVT*TSSSAP
Trigger: GGGTGCTGAGGAGGAGGTGCAGGTCACATTAGCAGG...TGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR GCA 90 bp TGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGTCCTGCTAATGTGACCTaGACCTCCTCCTCAGCACCC +
Preference number: 4 (lower is better)
Translates to: CTYLYMLQALLSQEFFCSPANVT*TSSSAP
Trigger: GGGTGCTGAGGAGGAGGTGCAGGTCACATTAGCAGG...ACTACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR GCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTGGTAGTGAGATCTTCTaGCACTGGGTGGGGGACAGG +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTGSEIF*HWVGDR
Trigger: CCTGTCCCCCACCCAGTGGCAGAAGATCTCACTACC...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR GCA 90 bp CCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACAGGTAGTGAGATCTTCTaGCACTGGGTGGGGGACAGG +
Preference number: 4 (lower is better)
Translates to: PSLVRHVDFTRCCAHISTGSEIF*HWVGDR
Trigger: CCTGTCCCCCACCCAGTGGCAGAAGATCTCACTACC...TGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR GCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGCTGCCCCCTAGTGGCTaGATGAAGTTACAGGCTTCA +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERLPPSG*MKLQAS
Trigger: TGAAGCCTGTAACTTCATGCAGCCACTAGGGGGCAG...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGGTGGCTTCTCTTGTGTaGCAGGGCCATCAACATCAC +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERVASLV*QGHQHH
Trigger: GTGATGTTGATGGCCCTGCCACACAAGAGAAGCCAC...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp CCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACAACACGGCTGTCGCCCTaGCTGGGAGAGCCAGTTTTA +
Preference number: 4 (lower is better)
Translates to: PSLVRHVDFTRCCAHISTTRLSP*LGEPVL
Trigger: TAAAACTGGCTCTCCCAGCCAGGGCGACAGCCGTGT...TGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTCCCTTCCTCCCAAGATaGGGAGCTTACACGGCTGTC +
Preference number: 4 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISPFLPR*GAYTAV
Trigger: GACAGCCGTGTAAGCTCCCCATCTTGGGAGGAAGGG...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp AGCACACATGTATGTGTATTTGATGTCTTTCTAGAGCAGATCCTAACCACACATAAGTGCCTCTGCTGGTaGGGGCTGAAGGGCTGCCCC +
Preference number: 4 (lower is better)
Translates to: STHVCVFDVFLEQILTTHKCLCW*GLKGCP
Trigger: GGGGCAGCCCTTCAGCCCCCACCAGCAGAGGCACTT...ATGTGTGGTTAGGATCTGCTCTAGAAAGACATCAAATACACATACATGTGTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp TACCTAACACTAAAGTGCTGCCCACAGAGAGAAACACAAATGCAAAAGGAAAACGAGCACAGCTGCCTCTaGGGGAGCACTCTGTGCTCG +
Preference number: 4 (lower is better)
Translates to: YLTLKCCPQRETQMQKENEHSCL*GSTLCS
Trigger: CGAGCACAGAGTGCTCCCCCAGAGGCAGCTGTGCTC...GTTTTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGCCTGTTAAAGATACTTaGTGCAGGGATGGGGGCTCC +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERPVKDT*CRDGGS
Trigger: GGAGCCCCCATCCCTGCACCAAGTATCTTTAACAGG...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTAGGCCGGCTTGGGGCTaGGATGTACAAGGAACTGGT +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTRPAWG*DVQGTG
Trigger: ACCAGTTCCTTGTACATCCCAGCCCCAAGCCGGCCT...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTAGGCCGGCTTGGGGCTaGGATGTACAAGGAACTGGT +
Preference number: 4 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISRPAWG*DVQGTG
Trigger: ACCAGTTCCTTGTACATCCCAGCCCCAAGCCGGCCT...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TACCTAACACTAAAGTGCTGCCCACAGAGAGAAACACAAATGCAAAAGGAAAACCCTCCCTTGCAGCCTTaGCGGCTCAGGGATTCCCAC +
Preference number: 4 (lower is better)
Translates to: YLTLKCCPQRETQMQKENPPLQP*RLRDSH
Trigger: GTGGGAATCCCTGAGCCGCCAAGGCTGCAAGGGAGG...GTTTTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TACCTAACACTAAAGTGCTGCCCACAGAGAGAAACACAAATGCAAAAGGAAAACCACGGCTCTGCCGTTTaGCAAATAGCTCCCCGCCCC +
Preference number: 4 (lower is better)
Translates to: YLTLKCCPQRETQMQKENHGSAV*QIAPRP
Trigger: GGGGCGGGGAGCTATTTGCCAAACGGCAGAGCCGTG...GTTTTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGGTGGGGCACGGATGTTaGGTGAGTATTTCCAGGATG +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERVGHGC*VSISRM
Trigger: CATCCTGGAAATACTCACCCAACATCCGTGCCCCAC...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGGGGATTGAGCCTTATTaGGGAGAGTTCGGGCAGCTT +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERGIEPY*GEFGQL
Trigger: AAGCTGCCCGAACTCTCCCCAATAAGGCTCAATCCC...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTTGGGAGGCCCTGAAGTaGGGCCAGGAGTTGAAGAAC +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTWEALK*GQELKN
Trigger: GTTCTTCAACTCCTGGCCCCACTTCAGGGCCTCCCA...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCTCTGGCTCTGCAGTGGGCTaGGGTGCAGGAGTGGAAAAT +
Preference number: 4 (lower is better)
Translates to: VDFTRCCAHISTCYRHSSGSAVG*GAGVEN
Trigger: ATTTTCCACTCCTGCACCCCAGCCCACTGCAGAGCC...AGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp CCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACAGGCTCTGCAGTGGGCTaGGGTGCAGGAGTGGAAAAT +
Preference number: 4 (lower is better)
Translates to: PSLVRHVDFTRCCAHISTGSAVG*GAGVEN
Trigger: ATTTTCCACTCCTGCACCCCAGCCCACTGCAGAGCC...TGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGTCGGGGCCTGGCTACTTaGAAACCACAGGAACTGGGA +
Preference number: 4 (lower is better)
Translates to: CTYLYMLQALLSQEFFCSRGLAT*KPQELG
Trigger: TCCCAGTTCCTGTGGTTTCCAAGTAGCCAGGCCCCG...ACTACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCTCTTTGTCACAGCTGGCTTaGCCGAGGGGCTCTTGGATG +
Preference number: 4 (lower is better)
Translates to: VDFTRCCAHISTCYRHSSLSQLA*PRGSWM
Trigger: CATCCAAGAGCCCCTCGGCCAAGCCAGCTGTGACAA...AGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp TACCTAACACTAAAGTGCTGCCCACAGAGAGAAACACAAATGCAAAAGGAAAACACCATAGGGATGAGATaGGGGCCAGGCCGGAGTGGA +
Preference number: 4 (lower is better)
Translates to: YLTLKCCPQRETQMQKENTIGMR*GPGRSG
Trigger: TCCACTCCGGCCTGGCCCTCATCTCATCCCTATGGT...GTTTTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR TCA 90 bp TGTGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTACCCAGTCCAGAGTTCTaGCTCTCTGCTGTGCCTAAG +
Preference number: 4 (lower is better)
Translates to: CAHISTCYRHSSLRSFSVPSPEF*LSAVPK
Trigger: CTTAGGCACAGCAGAGAGTCAGAACTCTGGACTGGG...TACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCCAGTCCAGAGTTCTaGCTCTCTGCTGTGCCTAAG +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTPSPEF*LSAVPK
Trigger: CTTAGGCACAGCAGAGAGTCAGAACTCTGGACTGGG...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp CCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACACCCAGTCCAGAGTTCTaGCTCTCTGCTGTGCCTAAG +
Preference number: 4 (lower is better)
Translates to: PSLVRHVDFTRCCAHISTPSPEF*LSAVPK
Trigger: CTTAGGCACAGCAGAGAGTCAGAACTCTGGACTGGG...TGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp AGCACACATGTATGTGTATTTGATGTCTTTCTAGAGCAGATCCTAACCACACATGTTAGGGACAGGGGTTaGGGCCAGCTCTGCCCTCCA +
Preference number: 4 (lower is better)
Translates to: STHVCVFDVFLEQILTTHVRDRG*GQLCPP
Trigger: TGGAGGGCAGAGCTGGCCTCAACCCCTGTCCCTAAC...ATGTGTGGTTAGGATCTGCTCTAGAAAGACATCAAATACACATACATGTGTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp TGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGTAGGCTTTCTGCGCGTTaGAGTTTGGCTTGCTTGGCC +
Preference number: 4 (lower is better)
Translates to: CTYLYMLQALLSQEFFCSRLSAR*SLACLA
Trigger: GGCCAAGCAAGCCAAACTGCAACGCGCAGAAAGCCT...ACTACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR GCA 90 bp CCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACAGAGACCTCACTTAGCTaGCCTCCCAGTCCAGAGTTC +
Preference number: 4 (lower is better)
Translates to: PSLVRHVDFTRCCAHISTETSLS*PPSPEF
Trigger: GAACTCTGGACTGGGAGGGCAGCTAAGTGAGGTCTC...TGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTGAGACCTCACTTAGCTaGCCTCCCAGTCCAGAGTTC +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTETSLS*PPSPEF
Trigger: GAACTCTGGACTGGGAGGGCAGCTAAGTGAGGTCTC...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp TACCTAACACTAAAGTGCTGCCCACAGAGAGAAACACAAATGCAAAAGGAAAACGCTACCCGCTGGCGCTaGTGTTCAAAGAGCTGGACC +
Preference number: 4 (lower is better)
Translates to: YLTLKCCPQRETQMQKENATRWR*CSKSWT
Trigger: GGTCCAGCTCTTTGAACAGCAGCGCCAGCGGGTAGC...GTTTTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAATTTTCATCCAGGTTCTaGACTAGTGACAGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKFSSRF*TSDSSS
Trigger: GGAGCTGCTGTCACTAGTGCAGAACCTGGATGAAAA...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TACCTAACACTAAAGTGCTGCCCACAGAGAGAAACACAAATGCAAAAGGAAAACCCTGCTCTGCCAGCCTaGCTCCGTCTTCGGATCTGT +
Preference number: 4 (lower is better)
Translates to: YLTLKCCPQRETQMQKENPALPA*LRLRIC
Trigger: ACAGATCCGAAGACGGAGCCAGGCTGGCAGAGCAGG...GTTTTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057090.12
CDS-3UTR CCA 90 bp GGGCATACGTTTATTCTTGTGCACAAACCAAAGAATTATGACACCCAATACTGCTCTTCTGCCACTGGGTaGGGGACAGGGCCCACCATA +
Preference number: 4 (lower is better)
Translates to: GHTFILVHKPKNYDTQYCSSATG*GTGPTI
Trigger: TATGGTGGGCCCTGTCCCCCACCCAGTGGCAGAAGA...GCAGTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057090.12
CDS-3UTR CCA 90 bp TGTGGGCATACGTTTATTCTTGTGCACAAACCAAAGAATTATGACACCCAATACGAGATCTTCTGCCACTaGGTGGGGGACAGGGCCCAC +
Preference number: 4 (lower is better)
Translates to: CGHTFILVHKPKNYDTQYEIFCH*VGDRAH
Trigger: GTGGGCCCTGTCCCCCACCCAGTGGCAGAAGATCTC...GTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCCCACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057090.12
CDS-3UTR CCA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAATTAGCAGGGATGCAATaGTCCGGCATTTGGTTCTTG +
Preference number: 4 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKLAGMQ*SGIWFL
Trigger: CAAGAACCAAATGCCGGACCATTGCATCCCTGCTAA...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTCTAGGGTGTACTTCTTaGCTCTCTGCCGCCGCTTCT +
Preference number: 4 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISLGCTS*LSAAAS
Trigger: AGAAGCGGCGGCAGAGAGCCAAGAAGTACACCCTAG...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TACCTAACACTAAAGTGCTGCCCACAGAGAGAAACACAAATGCAAAAGGAAAACCTGGAGGCTACCCGCTaGCGCTGCTGTTCAAAGAGC +
Preference number: 4 (lower is better)
Translates to: YLTLKCCPQRETQMQKENLEATR*RCCSKS
Trigger: GCTCTTTGAACAGCAGCGCCAGCGGGTAGCCTCCAG...GTTTTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TGTGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAATTAAGCATAGCTGCTaGGCCCACCTGAGCCAGCTC +
Preference number: 4 (lower is better)
Translates to: CAHISTCYRHSSLRSFSVIKHSC*AHLSQL
Trigger: GAGCTGGCTCAGGTGGGCCCAGCAGCTATGCTTAAT...TACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TACCTAACACTAAAGTGCTGCCCACAGAGAGAAACACAAATGCAAAAGGAAAACGGACCAGAGGAGCGTTaGGTGCTGCTAGAAGCCCCA +
Preference number: 4 (lower is better)
Translates to: YLTLKCCPQRETQMQKENGPEER*VLLEAP
Trigger: TGGGGCTTCTAGCAGCACCCAACGCTCCTCTGGTCC...GTTTTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GGGCATACGTTTATTCTTGTGCACAAACCAAAGAATTATGACACCCAATACTGCGGACCAGAGGAGCGTTaGGTGCTGCTAGAAGCCCCA +
Preference number: 4 (lower is better)
Translates to: GHTFILVHKPKNYDTQYCGPEER*VLLEAP
Trigger: TGGGGCTTCTAGCAGCACCCAACGCTCCTCTGGTCC...GCAGTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGTACAGCAGCTCCGGGTTaGGCGAGTTCTTCGTCTCTT +
Preference number: 4 (lower is better)
Translates to: CTYLYMLQALLSQEFFCSTAAPG*ASSSSL
Trigger: AAGAGACGAAGAACTCGCCCAACCCGGAGCTGCTGT...ACTACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp CCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATCTGCAAAGCACTGGGCTTCGTTTTAAGTTGGTATaGCTGATGTCGCATGAAATC +
Preference number: 4 (lower is better)
Translates to: PCPSGIRHEGLNLQSTGLRFKLV*LMSHEI
Trigger: GATTTCATGCGACATCAGCCATACCAACTTAAAACG...AAGCCCAGTGCTTTGCAGATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TACCTAACACTAAAGTGCTGCCCACAGAGAGAAACACAAATGCAAAAGGAAAACTGGGGACAAGCACAGTaGGAGCCAAGGGCTCTGCAG +
Preference number: 4 (lower is better)
Translates to: YLTLKCCPQRETQMQKENWGQAQ*EPRALQ
Trigger: CTGCAGAGCCCTTGGCTCCCACTGTGCTTGTCCCCA...GTTTTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp TACCTAACACTAAAGTGCTGCCCACAGAGAGAAACACAAATGCAAAAGGAAAACCTGTCCCAGTCGGATTaGTTAGTAAGGCTGCGGGCG +
Preference number: 4 (lower is better)
Translates to: YLTLKCCPQRETQMQKENLSQSD*LVRLRA
Trigger: CGCCCGCAGCCTTACTAATCAATCCGACTGGGACAG...GTTTTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp TACCTAACACTAAAGTGCTGCCCACAGAGAGAAACACAAATGCAAAAGGAAAACCCCCTAGTGGCTGCATaGAGTTACAGGCTTCAGCCC +
Preference number: 4 (lower is better)
Translates to: YLTLKCCPQRETQMQKENPLVAA*SYRLQP
Trigger: GGGCTGAAGCCTGTAACTTCATGCAGCCACTAGGGG...GTTTTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTAATCTGCGGATCTCCTaGACTCGGGCAGTTTTGGGA +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTNLRIS*TRAVLG
Trigger: TCCCAAAACTGCCCGAGTTCAGGAGATCCGCAGATT...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp TGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGTCTCCTGAGAGACTCTTaGTGGTCTGGGTTAGGGACA +
Preference number: 4 (lower is better)
Translates to: CTYLYMLQALLSQEFFCSLLRDS*WSGLGT
Trigger: TGTCCCTAACCCAGACCATCAAGAGTCTCTCAGGAG...ACTACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTAACAGGTGCTGGTTCTaGAGGGCTGTCAGACAGGTA +
Preference number: 4 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISNRCWF*RAVRQV
Trigger: TACCTGTCTGACAGCCCTGCAGAACCAGCACCTGTT...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR GCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTGCCAGTTTTAACAGGTaGTGGTTCTGCAGGGCTGTC +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTASFNR*WFCRAV
Trigger: GACAGCCCTGCAGAACCAGCACCTGTTAAAACTGGC...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR GCA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTCTGCCCCCTAGTGGCTaGATGAAGTTACAGGCTTCA +
Preference number: 4 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISLPPSG*MKLQAS
Trigger: TGAAGCCTGTAACTTCATGCAGCCACTAGGGGGCAG...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp TGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGTCAGGAGTGGAAAATCTaGGGATCTCCTGAACTCGGG +
Preference number: 4 (lower is better)
Translates to: CTYLYMLQALLSQEFFCSQEWKI*GSPELG
Trigger: CCCGAGTTCAGGAGATCCGCAGATTTTCCACTCCTG...ACTACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TGTGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGTGGCTTCTCTTGTGTaGCAGGGCCATCAACATCAC +
Preference number: 4 (lower is better)
Translates to: CAHISTCYRHSSLRSFSVVASLV*QGHQHH
Trigger: GTGATGTTGATGGCCCTGCCACACAAGAGAAGCCAC...TACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp AGCACACATGTATGTGTATTTGATGTCTTTCTAGAGCAGATCCTAACCACACATATCAGGTGGGGCTCCTaGAAGGGAAGGCCTTGCAGG +
Preference number: 4 (lower is better)
Translates to: STHVCVFDVFLEQILTTHIRWGS*KGRPCR
Trigger: CCTGCAAGGCCTTCCCTTCCAGGAGCCCCACCTGAT...ATGTGTGGTTAGGATCTGCTCTAGAAAGACATCAAATACACATACATGTGTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp TACCTAACACTAAAGTGCTGCCCACAGAGAGAAACACAAATGCAAAAGGAAAACCTGCGCGTTGCAGTTTaGCTTGCTTGGCCTTCTGGG +
Preference number: 4 (lower is better)
Translates to: YLTLKCCPQRETQMQKENLRVAV*LAWPSG
Trigger: CCCAGAAGGCCAAGCAAGCCAAACTGCAACGCGCAG...GTTTTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp GGGCATACGTTTATTCTTGTGCACAAACCAAAGAATTATGACACCCAATACTGCTGCTGTTCAAAGAGCTaGACCCCTCGCCCAGAGACC +
Preference number: 4 (lower is better)
Translates to: GHTFILVHKPKNYDTQYCCCSKS*TPRPET
Trigger: GGTCTCTGGGCGAGGGGTCCAGCTCTTTGAACAGCA...GCAGTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTGAGTGGACAAGAAGATaGAAGCGGTGGAGGTCATGG +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTEWTRR*KRWRSW
Trigger: CCATGACCTCCACCGCTTCCATCTTCTTGTCCACTC...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAAAGTTTCTTAGTGGAGTaGACAAGAAGATGGAAGCGG +
Preference number: 4 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKSFLVE*TRRWKR
Trigger: CCGCTTCCATCTTCTTGTCCACTCCACTAAGAAACT...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCTCTGTGGGGCACGGATGTTaGGTGAGTATTTCCAGGATG +
Preference number: 4 (lower is better)
Translates to: VDFTRCCAHISTCYRHSSVGHGC*VSISRM
Trigger: CATCCTGGAAATACTCACCCAACATCCGTGCCCCAC...AGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCTCTGGGATTGAGCCTTATTaGGGAGAGTTCGGGCAGCTT +
Preference number: 4 (lower is better)
Translates to: VDFTRCCAHISTCYRHSSGIEPY*GEFGQL
Trigger: AAGCTGCCCGAACTCTCCCCAATAAGGCTCAATCCC...AGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp AGCACACATGTATGTGTATTTGATGTCTTTCTAGAGCAGATCCTAACCACACATGAACTCGGGCAGTTTTaGGAGGCCCTGAAGTGGGGC +
Preference number: 4 (lower is better)
Translates to: STHVCVFDVFLEQILTTHELGQF*EALKWG
Trigger: GCCCCACTTCAGGGCCTCCCAAAACTGCCCGAGTTC...ATGTGTGGTTAGGATCTGCTCTAGAAAGACATCAAATACACATACATGTGTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp AGCACACATGTATGTGTATTTGATGTCTTTCTAGAGCAGATCCTAACCACACATTGGGGACAAGCACAGTaGGAGCCAAGGGCTCTGCAG +
Preference number: 4 (lower is better)
Translates to: STHVCVFDVFLEQILTTHWGQAQ*EPRALQ
Trigger: CTGCAGAGCCCTTGGCTCCCACTGTGCTTGTCCCCA...ATGTGTGGTTAGGATCTGCTCTAGAAAGACATCAAATACACATACATGTGTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TACCTAACACTAAAGTGCTGCCCACAGAGAGAAACACAAATGCAAAAGGAAAACCTGAGAACCGGGGCCTaGCTACTTGGAAACCACAGG +
Preference number: 4 (lower is better)
Translates to: YLTLKCCPQRETQMQKENLRTGA*LLGNHR
Trigger: CCTGTGGTTTCCAAGTAGCCAGGCCCCGGTTCTCAG...GTTTTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp AGCACACATGTATGTGTATTTGATGTCTTTCTAGAGCAGATCCTAACCACACATGGGCTTTGTCACAGCTaGCTTGGCCGAGGGGCTCTT +
Preference number: 4 (lower is better)
Translates to: STHVCVFDVFLEQILTTHGLCHS*LGRGAL
Trigger: AAGAGCCCCTCGGCCAAGCCAGCTGTGACAAAGCCC...ATGTGTGGTTAGGATCTGCTCTAGAAAGACATCAAATACACATACATGTGTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp TACCTAACACTAAAGTGCTGCCCACAGAGAGAAACACAAATGCAAAAGGAAAACTGCAAGAAACCCCGTTaGTCGCTAAGAGCTGGTCCC +
Preference number: 4 (lower is better)
Translates to: YLTLKCCPQRETQMQKENCKKPR*SLRAGP
Trigger: GGGACCAGCTCTTAGCGATCAACGGGGTTTCTTGCA...GTTTTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR TCA 90 bp AGCACACATGTATGTGTATTTGATGTCTTTCTAGAGCAGATCCTAACCACACATCGAAGGCTTGTGGGCTaGAGAGCCTGGGAAACAGGA +
Preference number: 4 (lower is better)
Translates to: STHVCVFDVFLEQILTTHRRLVG*RAWETG
Trigger: TCCTGTTTCCCAGGCTCTTCAGCCCACAAGCCTTCG...ATGTGTGGTTAGGATCTGCTCTAGAAAGACATCAAATACACATACATGTGTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTGTCATGGCACTGGCATaGGAGAAGTTGGTGCAAGAA +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTVMALA*EKLVQE
Trigger: TTCTTGCACCAACTTCTCCCATGCCAGTGCCATGAC...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp TGTGGGCATACGTTTATTCTTGTGCACAAACCAAAGAATTATGACACCCAATACGTACACCTCATCAGGTaGGGCTCCTGGAAGGGAAGG +
Preference number: 4 (lower is better)
Translates to: CGHTFILVHKPKNYDTQYVHLIR*GSWKGR
Trigger: CCTTCCCTTCCAGGAGCCCCACCTGATGAGGTGTAC...GTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCCCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057090.12
CDS-3UTR CCA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTTTTACGCTTTTCTCCTaGAGGCTTTCTGCGCGTTGC +
Preference number: 4 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISFTLFS*RLSARC
Trigger: GCAACGCGCAGAAAGCCTCCAGGAGAAAAGCGTAAA...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTTTTACGCTTTTCTCCTaGAGGCTTTCTGCGCGTTGC +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTFTLFS*RLSARC
Trigger: GCAACGCGCAGAAAGCCTCCAGGAGAAAAGCGTAAA...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCAATGGTCCGGCATTTaGTTCTTGCCTCCTTTACGC +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTQWSGI*FLPPLR
Trigger: GCGTAAAGGAGGCAAGAACCAAATGCCGGACCATTG...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGTCAATGGTCCGGCATTTaGTTCTTGCCTCCTTTACGC +
Preference number: 4 (lower is better)
Translates to: CTYLYMLQALLSQEFFCSQWSGI*FLPPLR
Trigger: GCGTAAAGGAGGCAAGAACCAAATGCCGGACCATTG...ACTACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TACCTAACACTAAAGTGCTGCCCACAGAGAGAAACACAAATGCAAAAGGAAAACGCTGGGGTGCAGGAGTaGAAAATCTGCGGATCTCCT +
Preference number: 4 (lower is better)
Translates to: YLTLKCCPQRETQMQKENAGVQE*KICGSP
Trigger: AGGAGATCCGCAGATTTTCCACTCCTGCACCCCAGC...GTTTTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TGTGGGCATACGTTTATTCTTGTGCACAAACCAAAGAATTATGACACCCAATACCTGAGAACCGGGGCCTaGCTACTTGGAAACCACAGG +
Preference number: 4 (lower is better)
Translates to: CGHTFILVHKPKNYDTQYLRTGA*LLGNHR
Trigger: CCTGTGGTTTCCAAGTAGCCAGGCCCCGGTTCTCAG...GTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCCCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR TCA 90 bp AGCACACATGTATGTGTATTTGATGTCTTTCTAGAGCAGATCCTAACCACACATCGGCAGCAAAGCTCCTaGGAGACTCTTGATGGTCTG +
Preference number: 4 (lower is better)
Translates to: STHVCVFDVFLEQILTTHRQQSS*ETLDGL
Trigger: CAGACCATCAAGAGTCTCTCAGGAGCTTTGCTGCCG...ATGTGTGGTTAGGATCTGCTCTAGAAAGACATCAAATACACATACATGTGTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp TGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGTCCGGCATTTGGTTCTTaGCTCCTTTACGCTTTTCTC +
Preference number: 4 (lower is better)
Translates to: CTYLYMLQALLSQEFFCSPAFGS*LLYAFL
Trigger: GAGAAAAGCGTAAAGGAGGCAAGAACCAAATGCCGG...ACTACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCGGCATTTGGTTCTTaGCTCCTTTACGCTTTTCTC +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTPAFGS*LLYAFL
Trigger: GAGAAAAGCGTAAAGGAGGCAAGAACCAAATGCCGG...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp TGTGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTATTTTCATCCAGGTTCTaGACTAGTGACAGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: CAHISTCYRHSSLRSFSVFSSRF*TSDSSS
Trigger: GGAGCTGCTGTCACTAGTGCAGAACCTGGATGAAAA...TACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp TACCTAACACTAAAGTGCTGCCCACAGAGAGAAACACAAATGCAAAAGGAAAACCTGCCCCCTAGTGGCTaGATGAAGTTACAGGCTTCA +
Preference number: 4 (lower is better)
Translates to: YLTLKCCPQRETQMQKENLPPSG*MKLQAS
Trigger: TGAAGCCTGTAACTTCATGCAGCCACTAGGGGGCAG...GTTTTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp TACCTAACACTAAAGTGCTGCCCACAGAGAGAAACACAAATGCAAAAGGAAAACCAGGAGTGGAAAATCTaGGGATCTCCTGAACTCGGG +
Preference number: 4 (lower is better)
Translates to: YLTLKCCPQRETQMQKENQEWKI*GSPELG
Trigger: CCCGAGTTCAGGAGATCCGCAGATTTTCCACTCCTG...GTTTTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp CCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACAAGTTTTAACAGGTGCTaGTTCTGCAGGGCTGTCAGA +
Preference number: 4 (lower is better)
Translates to: PSLVRHVDFTRCCAHISTSFNRC*FCRAVR
Trigger: TCTGACAGCCCTGCAGAACCAGCACCTGTTAAAACT...TGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTAGTTTTAACAGGTGCTaGTTCTGCAGGGCTGTCAGA +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTSFNRC*FCRAVR
Trigger: TCTGACAGCCCTGCAGAACCAGCACCTGTTAAAACT...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CCA 90 bp TGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGTTTAGCAGGGATGCAATaGTCCGGCATTTGGTTCTTG +
Preference number: 4 (lower is better)
Translates to: CTYLYMLQALLSQEFFCSLAGMQ*SGIWFL
Trigger: CAAGAACCAAATGCCGGACCATTGCATCCCTGCTAA...ACTACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp AGCACACATGTATGTGTATTTGATGTCTTTCTAGAGCAGATCCTAACCACACATCTAGGGTGTACTTCTTaGCTCTCTGCCGCCGCTTCT +
Preference number: 4 (lower is better)
Translates to: STHVCVFDVFLEQILTTHLGCTS*LSAAAS
Trigger: AGAAGCGGCGGCAGAGAGCCAAGAAGTACACCCTAG...ATGTGTGGTTAGGATCTGCTCTAGAAAGACATCAAATACACATACATGTGTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp AGCACACATGTATGTGTATTTGATGTCTTTCTAGAGCAGATCCTAACCACACATATTAAGCATAGCTGCTaGGCCCACCTGAGCCAGCTC +
Preference number: 4 (lower is better)
Translates to: STHVCVFDVFLEQILTTHIKHSC*AHLSQL
Trigger: GAGCTGGCTCAGGTGGGCCCAGCAGCTATGCTTAAT...ATGTGTGGTTAGGATCTGCTCTAGAAAGACATCAAATACACATACATGTGTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp AGCACACATGTATGTGTATTTGATGTCTTTCTAGAGCAGATCCTAACCACACATAACAGGTGCTGGTTCTaGAGGGCTGTCAGACAGGTA +
Preference number: 4 (lower is better)
Translates to: STHVCVFDVFLEQILTTHNRCWF*RAVRQV
Trigger: TACCTGTCTGACAGCCCTGCAGAACCAGCACCTGTT...ATGTGTGGTTAGGATCTGCTCTAGAAAGACATCAAATACACATACATGTGTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR GCA 90 bp AGCACACATGTATGTGTATTTGATGTCTTTCTAGAGCAGATCCTAACCACACATGTTAAAGATACTTGGTaGAGGGATGGGGGCTCCACC +
Preference number: 4 (lower is better)
Translates to: STHVCVFDVFLEQILTTHVKDTW*RDGGST
Trigger: GGTGGAGCCCCCATCCCTGCACCAAGTATCTTTAAC...ATGTGTGGTTAGGATCTGCTCTAGAAAGACATCAAATACACATACATGTGTGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR GCA 90 bp AGCACACATGTATGTGTATTTGATGTCTTTCTAGAGCAGATCCTAACCACACATCTCCTGGAGGCTTTCTaGGCGTTGCAGTTCTGCATA +
Preference number: 4 (lower is better)
Translates to: STHVCVFDVFLEQILTTHLLEAF*ALQFCI
Trigger: TATGCAGAACTGCAACGCGCAGAAAGCCTCCAGGAG...ATGTGTGGTTAGGATCTGCTCTAGAAAGACATCAAATACACATACATGTGTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GGGCATACGTTTATTCTTGTGCACAAACCAAAGAATTATGACACCCAATACTGCTTTACGCTTTTCTCCTaGAGGCTTTCTGCGCGTTGC +
Preference number: 4 (lower is better)
Translates to: GHTFILVHKPKNYDTQYCFTLFS*RLSARC
Trigger: GCAACGCGCAGAAAGCCTCCAGGAGAAAAGCGTAAA...GCAGTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GGGCATACGTTTATTCTTGTGCACAAACCAAAGAATTATGACACCCAATACTGCCAATGGTCCGGCATTTaGTTCTTGCCTCCTTTACGC +
Preference number: 4 (lower is better)
Translates to: GHTFILVHKPKNYDTQYCQWSGI*FLPPLR
Trigger: GCGTAAAGGAGGCAAGAACCAAATGCCGGACCATTG...GCAGTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTAGTTTCTTAGTGGAGTaGACAAGAAGATGGAAGCGG +
Preference number: 4 (lower is better)
Translates to: DTLISQDAVHISLHATGTSFLVE*TRRWKR
Trigger: CCGCTTCCATCTTCTTGTCCACTCCACTAAGAAACT...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp CCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACAAGTTTCTTAGTGGAGTaGACAAGAAGATGGAAGCGG +
Preference number: 4 (lower is better)
Translates to: PSLVRHVDFTRCCAHISTSFLVE*TRRWKR
Trigger: CCGCTTCCATCTTCTTGTCCACTCCACTAAGAAACT...TGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGCGTTTTAAGTTGGTATaGCTGATGTCGCATGAAATC +
Preference number: 4 (lower is better)
Translates to: GGEAREARKYREDCKAERRFKLV*LMSHEI
Trigger: GATTTCATGCGACATCAGCCATACCAACTTAAAACG...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CCA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTCGTTTTAAGTTGGTATaGCTGATGTCGCATGAAATC +
Preference number: 4 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISRFKLV*LMSHEI
Trigger: GATTTCATGCGACATCAGCCATACCAACTTAAAACG...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS GCA 90 bp GCCTCCTGCAGGATGCCGGTGCGGGCAGCCGGCACAGAGATGCGCTaGTCCCGAACGCTGGCAGGCTCGGGGACCGCGGGGCCCGGCGCC +
Preference number: 5 (lower is better)
Translates to: ASCRMPVRAAGTEMR*SRTLAGSGTAGPGA
Trigger: GGCGCCGGGCCCCGCGGTCCCCGAGCCTGCCAGCGTTCGGGAGCAGCGCATCTCTGTGCCGGCTGCCCGCACCGGCATCCTGCAGGAGGC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS GCA 90 bp GGGTTGGGCGAGTTCTTCGTCTCTTCCTTCCCAGGCCGGAACATCTaGTTGCGGGTGCCCCGGCGCCTAGCCTCCTGCAGGATGCCGGTG +
Preference number: 5 (lower is better)
Translates to: GLGEFFVSSFPGRNI*LRVPRRLASCRMPV
Trigger: CACCGGCATCCTGCAGGAGGCTAGGCGCCGGGGCACCCGCAAGCAGATGTTCCGGCCTGGGAAGGAAGAGACGAAGAACTCGCCCAACCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS GCA 90 bp AGGGATGGGGGCTCCACCATCCGGGAAGAAGGGGGTAGGGCTGACTaGAGGGACCGACAAAGGGCTGAGTGGGAGCACAGCTGCCTCTGG +
Preference number: 5 (lower is better)
Translates to: RDGGSTIREEGGRAD*RDRQRAEWEHSCLW
Trigger: CCAGAGGCAGCTGTGCTCCCACTCAGCCCTTTGTCGGTCCCTGCAGTCAGCCCTACCCCCTTCTTCCCGGATGGTGGAGCCCCCATCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CCA 90 bp GACTGCAGGGACCGACAAAGGGCTGAGTGGGAGCACAGCTGCCTCTaGGGGAGCACTCTGTGCTCGAGGTGGGGACTGCAGACTCTGCCC +
Preference number: 5 (lower is better)
Translates to: DCRDRQRAEWEHSCL*GSTLCSRWGLQTLP
Trigger: GGGCAGAGTCTGCAGTCCCCACCTCGAGCACAGAGTGCTCCCCCAGAGGCAGCTGTGCTCCCACTCAGCCCTTTGTCGGTCCCTGCAGTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS GCA 90 bp CCTCATCAGGTGGGGCTCCTGGAAGGGAAGGCCTTGCAGGACCTCTaGGGCGGGTTCGGCGTGGCTTCTCTTGTGTGGCAGGGCCATCAA +
Preference number: 5 (lower is better)
Translates to: PHQVGLLEGKALQDL*GGFGVASLVWQGHQ
Trigger: TTGATGGCCCTGCCACACAAGAGAAGCCACGCCGAACCCGCCGCAGAGGTCCTGCAAGGCCTTCCCTTCCAGGAGCCCCACCTGATGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CCA 90 bp TTCTGCAGGGCTGTCAGACAGGTACACCTCATCAGGTGGGGCTCCTaGAAGGGAAGGCCTTGCAGGACCTCTGCGGCGGGTTCGGCGTGG +
Preference number: 5 (lower is better)
Translates to: FCRAVRQVHLIRWGS*KGRPCRTSAAGSAW
Trigger: CCACGCCGAACCCGCCGCAGAGGTCCTGCAAGGCCTTCCCTTCCAGGAGCCCCACCTGATGAGGTGTACCTGTCTGACAGCCCTGCAGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CCA 90 bp TGCCTCTGCTGGTGGGGGCTGAAGGGCTGCCCCTTCCTCCCAAGATaGGGAGCTTACACGGCTGTCGCCCTGGCTGGGAGAGCCAGTTTT +
Preference number: 5 (lower is better)
Translates to: CLCWWGLKGCPFLPR*GAYTAVALAGRASF
Trigger: AAAACTGGCTCTCCCAGCCAGGGCGACAGCCGTGTAAGCTCCCCATCTTGGGAGGAAGGGGCAGCCCTTCAGCCCCCACCAGCAGAGGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CCA 90 bp CATGGCAGCAGCGCTAGGAGGAGTGGGCGGTTCTGGGGCGCCTCCTaGTGTAACAGGCCGGCTTGGGGCTGGGATGTACAAGGAACTGGT +
Preference number: 5 (lower is better)
Translates to: HGSSARRSGRFWGAS*CNRPAWGWDVQGTG
Trigger: ACCAGTTCCTTGTACATCCCAGCCCCAAGCCGGCCTGTTACACCAGGAGGCGCCCCAGAACCGCCCACTCCTCCTAGCGCTGCTGCCATG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CCA 90 bp GCCCTGCCCCAGGCCTCCAGACATGGGCCTGCAACCCTGTTCTGGTaGCTGAGAACCGGGGCCTGGCTACTTGGAAACCACAGGAACTGG +
Preference number: 5 (lower is better)
Translates to: ALPQASRHGPATLFW*LRTGAWLLGNHRNW
Trigger: CCAGTTCCTGTGGTTTCCAAGTAGCCAGGCCCCGGTTCTCAGCCACCAGAACAGGGTTGCAGGCCCATGTCTGGAGGCCTGGGGCAGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS GCA 90 bp AGACAGGTACACCTCATCAGGTGGGGCTCCTGGAAGGGAAGGCCTTaGAGGACCTCTGCGGCGGGTTCGGCGTGGCTTCTCTTGTGTGGC +
Preference number: 5 (lower is better)
Translates to: RQVHLIRWGSWKGRP*RTSAAGSAWLLLCG
Trigger: GCCACACAAGAGAAGCCACGCCGAACCCGCCGCAGAGGTCCTGCAAGGCCTTCCCTTCCAGGAGCCCCACCTGATGAGGTGTACCTGTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CCA 90 bp GAGTGGGAGCACAGCTGCCTCTGGGGGAGCACTCTGTGCTCGAGGTaGGGACTGCAGACTCTGCCCATTAAGCATAGCTGCTGGGCCCAC +
Preference number: 5 (lower is better)
Translates to: EWEHSCLWGSTLCSR*GLQTLPIKHSCWAH
Trigger: GTGGGCCCAGCAGCTATGCTTAATGGGCAGAGTCTGCAGTCCCCACCTCGAGCACAGAGTGCTCCCCCAGAGGCAGCTGTGCTCCCACTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CCA 90 bp AGGAGTGGGCGGTTCTGGGGCGCCTCCTGGTGTAACAGGCCGGCTTaGGGCTGGGATGTACAAGGAACTGGTAGCGGTCACAGGACCAGA +
Preference number: 5 (lower is better)
Translates to: RSGRFWGASWCNRPA*GWDVQGTGSGHRTR
Trigger: TCTGGTCCTGTGACCGCTACCAGTTCCTTGTACATCCCAGCCCCAAGCCGGCCTGTTACACCAGGAGGCGCCCCAGAACCGCCCACTCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp GAGGATGGAGGGGCTTGGGACACAGTTCAGCCTCTTAGAAGCTTGCCTTACAGTCTCCCCGCCCCTCCCTaGCAGCCTTGGCGGCTCAGG +
Preference number: 5 (lower is better)
Translates to: EDGGAWDTVQPLRSLPYSLPAPP*QPWRLR
Trigger: CCTGAGCCGCCAAGGCTGCAAGGGAGGGGCGGGGAG...ACTGTAAGGCAAGCTTCTAAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS GCA 90 bp GCTGTCGCCCTGGCTGGGAGAGCCAGTTTTAACAGGTGCTGGTTCTaGAGGGCTGTCAGACAGGTACACCTCATCAGGTGGGGCTCCTGG +
Preference number: 5 (lower is better)
Translates to: AVALAGRASFNRCWF*RAVRQVHLIRWGSW
Trigger: CCAGGAGCCCCACCTGATGAGGTGTACCTGTCTGACAGCCCTGCAGAACCAGCACCTGTTAAAACTGGCTCTCCCAGCCAGGGCGACAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS GCA 90 bp CTAGAGCCAGATGTAGCTTCCACCACGTACCTATCGGCACGGCTCTaGCGTTTGGCAAATAGCTCCCCGCCCCTCCCTTGCAGCCTTGGC +
Preference number: 5 (lower is better)
Translates to: LEPDVASTTYLSARL*RLANSSPPLPCSLG
Trigger: GCCAAGGCTGCAAGGGAGGGGCGGGGAGCTATTTGCCAAACGGCAGAGCCGTGCCGATAGGTACGTGGTGGAAGCTACATCTGGCTCTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CCA 90 bp CCCATCAAGGAGCCCTCGCGACCCAGGTTTAGGAGCCACGGGAGGTaGAGTCTTAGGCGTTGTAGGGGGTGGAGTTTTGGGAGCCATTGG +
Preference number: 5 (lower is better)
Translates to: PIKEPSRPRFRSHGR*SLRRCRGWSFGSHW
Trigger: CCAATGGCTCCCAAAACTCCACCCCCTACAACGCCTAAGACTCCACCTCCCGTGGCTCCTAAACCTGGGTCGCGAGGGCTCCTTGATGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CCA 90 bp GCCTGCAACCCTGTTCTGGTGGCTGAGAACCGGGGCCTGGCTACTTaGAAACCACAGGAACTGGGAGCGGCAGCAAAGCTCCTGAGAGAC +
Preference number: 5 (lower is better)
Translates to: ACNPVLVAENRGLAT*KPQELGAAAKLLRD
Trigger: GTCTCTCAGGAGCTTTGCTGCCGCTCCCAGTTCCTGTGGTTTCCAAGTAGCCAGGCCCCGGTTCTCAGCCACCAGAACAGGGTTGCAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp GATTCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGCTCCCCGCCCCTCCCTaGCAGCCTTGGCGGCTCAGG +
Preference number: 5 (lower is better)
Translates to: DSDVLSTGPWLLTSCNPRLPAPP*QPWRLR
Trigger: CCTGAGCCGCCAAGGCTGCAAGGGAGGGGCGGGGAG...CCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGAATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS TCA 90 bp GGGTCATGGCACTGGCATGGGAGAAGTTGGTGCAAGAAACCCCGTTaGTCGCTAAGAGCTGGTCCCTCTCCCGGAGTCCTGCTCTGCCAG +
Preference number: 5 (lower is better)
Translates to: GSWHWHGRSWCKKPR*SLRAGPSPGVLLCQ
Trigger: CTGGCAGAGCAGGACTCCGGGAGAGGGACCAGCTCTTAGCGATCAACGGGGTTTCTTGCACCAACTTCTCCCATGCCAGTGCCATGACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS GCA 90 bp GGACCAGATTCCGCACCGCCCGCCCGAGGTTTTTCATCCAGGTTCTaGACTAGTGACAGCAGCTCCGGGTTGGGCGAGTTCTTCGTCTCT +
Preference number: 5 (lower is better)
Translates to: GPDSAPPARGFSSRF*TSDSSSGLGEFFVS
Trigger: AGAGACGAAGAACTCGCCCAACCCGGAGCTGCTGTCACTAGTGCAGAACCTGGATGAAAAACCTCGGGCGGGCGGTGCGGAATCTGGTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CCA 90 bp ATCGCTAAGAGCTGGTCCCTCTCCCGGAGTCCTGCTCTGCCAGCCTaGCTCCGTCTTCGGATCTGTAAAGGTTTCCTCTGTTCGGTCCCC +
Preference number: 5 (lower is better)
Translates to: IAKSWSLSRSPALPA*LRLRICKGFLCSVP
Trigger: GGGGACCGAACAGAGGAAACCTTTACAGATCCGAAGACGGAGCCAGGCTGGCAGAGCAGGACTCCGGGAGAGGGACCAGCTCTTAGCGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057090.12
CDS CCA 90 bp GCATGGGAGAAGTTGGTGCAAGAAACCCCGTTGATCGCTAAGAGCTaGTCCCTCTCCCGGAGTCCTGCTCTGCCAGCCTGGCTCCGTCTT +
Preference number: 5 (lower is better)
Translates to: AWEKLVQETPLIAKS*SLSRSPALPAWLRL
Trigger: AAGACGGAGCCAGGCTGGCAGAGCAGGACTCCGGGAGAGGGACCAGCTCTTAGCGATCAACGGGGTTTCTTGCACCAACTTCTCCCATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CCA 90 bp TCCTGGAAGGGAAGGCCTTGCAGGACCTCTGCGGCGGGTTCGGCGTaGCTTCTCTTGTGTGGCAGGGCCATCAACATCACTATCTGTCTC +
Preference number: 5 (lower is better)
Translates to: SWKGRPCRTSAAGSA*LLLCGRAINITICL
Trigger: GAGACAGATAGTGATGTTGATGGCCCTGCCACACAAGAGAAGCCACGCCGAACCCGCCGCAGAGGTCCTGCAAGGCCTTCCCTTCCAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CCA 90 bp TACACGGCTGTCGCCCTGGCTGGGAGAGCCAGTTTTAACAGGTGCTaGTTCTGCAGGGCTGTCAGACAGGTACACCTCATCAGGTGGGGC +
Preference number: 5 (lower is better)
Translates to: YTAVALAGRASFNRC*FCRAVRQVHLIRWG
Trigger: GCCCCACCTGATGAGGTGTACCTGTCTGACAGCCCTGCAGAACCAGCACCTGTTAAAACTGGCTCTCCCAGCCAGGGCGACAGCCGTGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CCA 90 bp TTGCTTGGCCTTCTGGGTGTAGGTGGTAGTGAGATCTTCTGCCACTaGGTGGGGGACAGGGCCCACCATAGGGATGAGATGAGGGCCAGG +
Preference number: 5 (lower is better)
Translates to: LLGLLGVGGSEIFCH*VGDRAHHRDEMRAR
Trigger: CCTGGCCCTCATCTCATCCCTATGGTGGGCCCTGTCCCCCACCCAGTGGCAGAAGATCTCACTACCACCTACACCCAGAAGGCCAAGCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CCA 90 bp TGCGCGTTGCAGTTCTGCATAGAACGGGTCTTGGAGCTCAGGAGCTaGGGCTTTGTCACAGCTGGCTTGGCCGAGGGGCTCTTGGATGGT +
Preference number: 5 (lower is better)
Translates to: CALQFCIERVLELRS*GFVTAGLAEGLLDG
Trigger: ACCATCCAAGAGCCCCTCGGCCAAGCCAGCTGTGACAAAGCCCCAGCTCCTGAGCTCCAAGACCCGTTCTATGCAGAACTGCAACGCGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp CCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATCTGCAAAGCACTGGGCTTGCACGGCTCTGCCGTTaGGCAAATAGCTCCCCGCCC +
Preference number: 5 (lower is better)
Translates to: PCPSGIRHEGLNLQSTGLARLCR*ANSSPP
Trigger: GGGCGGGGAGCTATTTGCCAAACGGCAGAGCCGTGC...AAGCCCAGTGCTTTGCAGATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp GAATCTGCAAAGCACTGGGCTTATACGGGTAGGGTAGAAAAGACCCATCCTTGCGGCCGGAACATCTGCTaGCGGGTGCCCCGGCGCCTA +
Preference number: 5 (lower is better)
Translates to: ESAKHWAYTGRVEKTHPCGRNIC*RVPRRL
Trigger: TAGGCGCCGGGGCACCCGCAAGCAGATGTTCCGGCC...GCAAGGATGGGTCTTTTCTACCCTACCCGTATAAGCCCAGTGCTTTGCAGATTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp CCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATCTGCAAAGCACTGGGCTTGTAGGGGGTGGAGTTTaGGGAGCCATTGGAGGCGGG +
Preference number: 5 (lower is better)
Translates to: PCPSGIRHEGLNLQSTGLVGGGV*GAIGGG
Trigger: CCCGCCTCCAATGGCTCCCAAAACTCCACCCCCTAC...AAGCCCAGTGCTTTGCAGATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp TCTTCACGGAAGGACAGTCCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATCCCTCCCTTGCAGCCTaGGCGGCTCAGGGATTCCCA +
Preference number: 5 (lower is better)
Translates to: SSRKDSPCPSGIRHEGLNPSLAA*AAQGFP
Trigger: TGGGAATCCCTGAGCCGCCAAGGCTGCAAGGGAGGG...ATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGGACTGTCCTTCCGTGAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS GCA 90 bp TTTGGCTTGCTTGGCCTTCTGGGTGTAGGTGGTAGTGAGATCTTCTaGCACTGGGTGGGGGACAGGGCCCACCATAGGGATGAGATGAGG +
Preference number: 5 (lower is better)
Translates to: FGLLGLLGVGGSEIF*HWVGDRAHHRDEMR
Trigger: CCTCATCTCATCCCTATGGTGGGCCCTGTCCCCCACCCAGTGGCAGAAGATCTCACTACCACCTACACCCAGAAGGCCAAGCAAGCCAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CAA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGGGCCGGAACATCTGCTaGCGGGTGCCCCGGCGCCTA +
Preference number: 5 (lower is better)
Translates to: GGEAREARKYREDCKAERGRNIC*RVPRRL
Trigger: TAGGCGCCGGGGCACCCGCAAGCAGATGTTCCGGCC...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp CCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATCTGCAAAGCACTGGGCTTGACAGCAGCTCCGGGTaGGGCGAGTTCTTCGTCTCT +
Preference number: 5 (lower is better)
Translates to: PCPSGIRHEGLNLQSTGLDSSSG*GEFFVS
Trigger: AGAGACGAAGAACTCGCCCAACCCGGAGCTGCTGTC...AAGCCCAGTGCTTTGCAGATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp GATTCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGCCCTCCCTTGCAGCCTaGGCGGCTCAGGGATTCCCA +
Preference number: 5 (lower is better)
Translates to: DSDVLSTGPWLLTSCNPRPSLAA*AAQGFP
Trigger: TGGGAATCCCTGAGCCGCCAAGGCTGCAAGGGAGGG...CCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGAATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS TCA 90 bp CTCACAGACCCTTCATCTGTTACCCTCCTCACAGTAAGGACAAGTTaGCGCCCTGAGGCGTCGATGAGGGTCATGGCACTGGCATGGGAG +
Preference number: 5 (lower is better)
Translates to: LTDPSSVTLLTVRTS*RPEASMRVMALAWE
Trigger: CTCCCATGCCAGTGCCATGACCCTCATCGACGCCTCAGGGCGTCAACTTGTCCTTACTGTGAGGAGGGTAACAGATGAAGGGTCTGTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS TCA 90 bp AAAGCTCCTGAGAGACTCTTGATGGTCTGGGTTAGGGACAGGGGTTaGGGCCAGCTCTGCCCTCCAAATGGGTTCGTCCAAGGTGGTAGC +
Preference number: 5 (lower is better)
Translates to: KAPERLLMVWVRDRG*GQLCPPNGFVQGGS
Trigger: GCTACCACCTTGGACGAACCCATTTGGAGGGCAGAGCTGGCCTCAACCCCTGTCCCTAACCCAGACCATCAAGAGTCTCTCAGGAGCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CCA 90 bp GAGGGTTGGGGGCTGCTGTTAGCAGGGATGCAATGGTCCGGCATTTaGTTCTTGCCTCCTTTACGCTTTTCTCCTGGAGGCTTTCTGCGC +
Preference number: 5 (lower is better)
Translates to: EGWGLLLAGMQWSGI*FLPPLRFSPGGFLR
Trigger: GCGCAGAAAGCCTCCAGGAGAAAAGCGTAAAGGAGGCAAGAACCAAATGCCGGACCATTGCATCCCTGCTAACAGCAGCCCCCAACCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp CCTTGCCCTTCTGGGATCAGACATGAGGGCCTGAATCTGCAAAGCACTGGGCTTACTAGGGTGTACTTCTaGGCTCTCTGCCGCCGCTTC +
Preference number: 5 (lower is better)
Translates to: PCPSGIRHEGLNLQSTGLTRVYF*ALCRRF
Trigger: GAAGCGGCGGCAGAGAGCCAAGAAGTACACCCTAGT...AAGCCCAGTGCTTTGCAGATTCAGGCCCTCATGTCTGATCCCAGAAGGGCAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp GAATCTGCAAAGCACTGGGCTTATACGGGTAGGGTAGAAAAGACCCATCCTTGCGCACGGCTCTGCCGTTaGGCAAATAGCTCCCCGCCC +
Preference number: 5 (lower is better)
Translates to: ESAKHWAYTGRVEKTHPCARLCR*ANSSPP
Trigger: GGGCGGGGAGCTATTTGCCAAACGGCAGAGCCGTGC...GCAAGGATGGGTCTTTTCTACCCTACCCGTATAAGCCCAGTGCTTTGCAGATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS TCA 90 bp CCCTTCATCTGTTACCCTCCTCACAGTAAGGACAAGTTGACGCCCTaGGGCGTCGATGAGGGTCATGGCACTGGCATGGGAGAAGTTGGT +
Preference number: 5 (lower is better)
Translates to: PFICYPPHSKDKLTP*GVDEGHGTGMGEVG
Trigger: ACCAACTTCTCCCATGCCAGTGCCATGACCCTCATCGACGCCTCAGGGCGTCAACTTGTCCTTACTGTGAGGAGGGTAACAGATGAAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CCA 90 bp GAGGTTTTTCATCCAGGTTCTGCACTAGTGACAGCAGCTCCGGGTTaGGCGAGTTCTTCGTCTCTTCCTTCCCAGGCCGGAACATCTGCT +
Preference number: 5 (lower is better)
Translates to: EVFHPGSALVTAAPG*ASSSSLPSQAGTSA
Trigger: AGCAGATGTTCCGGCCTGGGAAGGAAGAGACGAAGAACTCGCCCAACCCGGAGCTGCTGTCACTAGTGCAGAACCTGGATGAAAAACCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp GAGGATGGAGGGGCTTGGGACACAGTTCAGCCTCTTAGAAGCTTGCCTTACAGTGCTGTCCCAGTCGGATaGATTAGTAAGGCTGCGGGC +
Preference number: 5 (lower is better)
Translates to: EDGGAWDTVQPLRSLPYSAVPVG*ISKAAG
Trigger: GCCCGCAGCCTTACTAATCAATCCGACTGGGACAGC...ACTGTAAGGCAAGCTTCTAAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp CAAATGCAAAAGGAAAACAGAGACCTGCTGAGACCTCTGGGTGGAGAAGCCAGAGTAGGGGGTGGAGTTTaGGGAGCCATTGGAGGCGGG +
Preference number: 5 (lower is better)
Translates to: QMQKENRDLLRPLGGEARVGGGV*GAIGGG
Trigger: CCCGCCTCCAATGGCTCCCAAAACTCCACCCCCTAC...TCTGGCTTCTCCACCCAGAGGTCTCAGCAGGTCTCTGTTTTCCTTTTGCATTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAATCAGGAGCTGGGGCTTaGTCACAGCTGGCTTGGCCG +
Preference number: 5 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKSGAGA*SQLAWP
Trigger: CGGCCAAGCCAGCTGTGACAAAGCCCCAGCTCCTGA...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGCCGGGGCCTGGCTACTaGGAAACCACAGGAACTGGG +
Preference number: 5 (lower is better)
Translates to: GGEAREARKYREDCKAERPGPGY*ETTGTG
Trigger: CCCAGTTCCTGTGGTTTCCAAGTAGCCAGGCCCCGG...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAATGCATAGAACGGGTCTaGGAGCTCAGGAGCTGGGGC +
Preference number: 5 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKCIERV*ELRSWG
Trigger: GCCCCAGCTCCTGAGCTCCAAGACCCGTTCTATGCA...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119483.2
CDS TCA 90 bp AACATCACTATCTGTCTCTCCATAGTAAGCTTCGCTGTCAGGGGGTaGACGAAGGCTTGTGGGCTGAAGAGCCTGGGAAACAGGAGCACC +
Preference number: 5 (lower is better)
Translates to: NITICLSIVSFAVRG*TKACGLKSLGNRST
Trigger: GGTGCTCCTGTTTCCCAGGCTCTTCAGCCCACAAGCCTTCGTTCACCCCCTGACAGCGAAGCTTACTATGGAGAGACAGATAGTGATGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS GCA 90 bp GCATTTGGTTCTTGCCTCCTTTACGCTTTTCTCCTGGAGGCTTTCTaGGCGTTGCAGTTTGGCTTGCTTGGCCTTCTGGGTGTAGGTGGT +
Preference number: 5 (lower is better)
Translates to: AFGSCLLYAFLLEAF*ALQFGLLGLLGVGG
Trigger: ACCACCTACACCCAGAAGGCCAAGCAAGCCAAACTGCAACGCGCAGAAAGCCTCCAGGAGAAAAGCGTAAAGGAGGCAAGAACCAAATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CAA 90 bp CAAATGCAAAAGGAAAACAGAGACCTGCTGAGACCTCTGGGTGGAGAAGCCAGATCTGCGCGTTGCAGTTaGGCTTGCTTGGCCTTCTGG +
Preference number: 5 (lower is better)
Translates to: QMQKENRDLLRPLGGEARSARCS*ACLAFW
Trigger: CCAGAAGGCCAAGCAAGCCAAACTGCAACGCGCAGA...TCTGGCTTCTCCACCCAGAGGTCTCAGCAGGTCTCTGTTTTCCTTTTGCATTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CAA 90 bp GTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCTCTCCCTCCCTTGCAGCCTaGGCGGCTCAGGGATTCCCA +
Preference number: 5 (lower is better)
Translates to: VDFTRCCAHISTCYRHSSPSLAA*AAQGFP
Trigger: TGGGAATCCCTGAGCCGCCAAGGCTGCAAGGGAGGG...AGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp TGTGGGCATACGTTTATTCTTGTGCACAAACCAAAGAATTATGACACCCAATACCTCCCCGCCCCTCCCTaGCAGCCTTGGCGGCTCAGG +
Preference number: 5 (lower is better)
Translates to: CGHTFILVHKPKNYDTQYLPAPP*QPWRLR
Trigger: CCTGAGCCGCCAAGGCTGCAAGGGAGGGGCGGGGAG...GTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCCCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp CCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACAGCACGGCTCTGCCGTTaGGCAAATAGCTCCCCGCCC +
Preference number: 5 (lower is better)
Translates to: PSLVRHVDFTRCCAHISTARLCR*ANSSPP
Trigger: GGGCGGGGAGCTATTTGCCAAACGGCAGAGCCGTGC...TGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp GAGGATGGAGGGGCTTGGGACACAGTTCAGCCTCTTAGAAGCTTGCCTTACAGTATGAAATCCAGGGCCTaGATACCCTGCTTAGGGGTC +
Preference number: 5 (lower is better)
Translates to: EDGGAWDTVQPLRSLPYSMKSRA*IPCLGV
Trigger: GACCCCTAAGCAGGGTATCAAGGCCCTGGATTTCAT...ACTGTAAGGCAAGCTTCTAAGAGGCTGAACTGTGTCCCAAGCCCCTCCATCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAAGCGTTGCAGTTTGGCTaGCTTGGCCTTCTGGGTGTA +
Preference number: 5 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKALQFG*LGLLGV
Trigger: TACACCCAGAAGGCCAAGCAAGCCAAACTGCAACGC...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CAA 90 bp TGTGGGCATACGTTTATTCTTGTGCACAAACCAAAGAATTATGACACCCAATACGGCCGGAACATCTGCTaGCGGGTGCCCCGGCGCCTA +
Preference number: 5 (lower is better)
Translates to: CGHTFILVHKPKNYDTQYGRNIC*RVPRRL
Trigger: TAGGCGCCGGGGCACCCGCAAGCAGATGTTCCGGCC...GTATTGGGTGTCATAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCCCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAAGGTGGGGCACGGATGTaGGGTGAGTATTTCCAGGAT +
Preference number: 5 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKGGARM*GEYFQD
Trigger: ATCCTGGAAATACTCACCCAACATCCGTGCCCCACC...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCGGGGCCTGGCTACTaGGAAACCACAGGAACTGGG +
Preference number: 5 (lower is better)
Translates to: DTLISQDAVHISLHATGTPGPGY*ETTGTG
Trigger: CCCAGTTCCTGTGGTTTCCAAGTAGCCAGGCCCCGG...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp TGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGTCCGGGGCCTGGCTACTaGGAAACCACAGGAACTGGG +
Preference number: 5 (lower is better)
Translates to: CTYLYMLQALLSQEFFCSPGPGY*ETTGTG
Trigger: CCCAGTTCCTGTGGTTTCCAAGTAGCCAGGCCCCGG...ACTACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp GGTGGAGAAGCCAGAGAGGCAAGGAAATATAGAGAAGATTGCAAAGCAGAGAGGGTGCAAGAAACCCCGTaGATCGCTAAGAGCTGGTCC +
Preference number: 5 (lower is better)
Translates to: GGEAREARKYREDCKAERVQETP*IAKSWS
Trigger: GGACCAGCTCTTAGCGATCAACGGGGTTTCTTGCAC...CCTCTCTGCTTTGCAATCTTCTCTATATTTCCTTGCCTCTCTGGCTTCTCCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CAA 90 bp AGCACACATGTATGTGTATTTGATGTCTTTCTAGAGCAGATCCTAACCACACATCTGGAAGGGAAGGCCTaGCAGGACCTCTGCGGCGGG +
Preference number: 5 (lower is better)
Translates to: STHVCVFDVFLEQILTTHLEGKA*QDLCGG
Trigger: CCCGCCGCAGAGGTCCTGCAAGGCCTTCCCTTCCAG...ATGTGTGGTTAGGATCTGCTCTAGAAAGACATCAAATACACATACATGTGTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CAA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAAGCAATGGTCCGGCATTaGGTTCTTGCCTCCTTTACG +
Preference number: 5 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKAMVRH*VLASFT
Trigger: CGTAAAGGAGGCAAGAACCAAATGCCGGACCATTGC...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTGACAGCAGCTCCGGGTaGGGCGAGTTCTTCGTCTCT +
Preference number: 5 (lower is better)
Translates to: DTLISQDAVHISLHATGTDSSSG*GEFFVS
Trigger: AGAGACGAAGAACTCGCCCAACCCGGAGCTGCTGTC...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp TGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGTCCGAGGCCCCTGGGATaGAGCCTTATTGGGGAGAGT +
Preference number: 5 (lower is better)
Translates to: CTYLYMLQALLSQEFFCSPRPLG*SLIGES
Trigger: ACTCTCCCCAATAAGGCTCAATCCCAGGGGCCTCGG...ACTACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp TGTGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTACCGAGGCCCCTGGGATaGAGCCTTATTGGGGAGAGT +
Preference number: 5 (lower is better)
Translates to: CAHISTCYRHSSLRSFSVPRPLG*SLIGES
Trigger: ACTCTCCCCAATAAGGCTCAATCCCAGGGGCCTCGG...TACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTCCGAGGCCCCTGGGATaGAGCCTTATTGGGGAGAGT +
Preference number: 5 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISPRPLG*SLIGES
Trigger: ACTCTCCCCAATAAGGCTCAATCCCAGGGGCCTCGG...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp TCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAAATGAAATCCAGGGCCTaGATACCCTGCTTAGGGGTC +
Preference number: 5 (lower is better)
Translates to: SDVLSTGPWLLTSCNPRKMKSRA*IPCLGV
Trigger: GACCCCTAAGCAGGGTATCAAGGCCCTGGATTTCAT...TTTCCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp GATTCTGATGTGCTCAGCACAGGGCCCTGGTTGCTAACTTCCTGTAATCCAAGGAAGTGGGGCCAGGAGTaGAAGAACCCTCATCAAAAC +
Preference number: 5 (lower is better)
Translates to: DSDVLSTGPWLLTSCNPRKWGQE*KNPHQN
Trigger: GTTTTGATGAGGGTTCTTCAACTCCTGGCCCCACTT...CCTTGGATTACAGGAAGTTAGCAACCAGGGCCCTGTGCTGAGCACATCAGAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp TGTGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTATCTGCGCGTTGCAGTTaGGCTTGCTTGGCCTTCTGG +
Preference number: 5 (lower is better)
Translates to: CAHISTCYRHSSLRSFSVSARCS*ACLAFW
Trigger: CCAGAAGGCCAAGCAAGCCAAACTGCAACGCGCAGA...TACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CAA 90 bp TGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGTGAGGCTTTCTGCGCGTaGCAGTTTGGCTTGCTTGGC +
Preference number: 5 (lower is better)
Translates to: CTYLYMLQALLSQEFFCSEAFCA*QFGLLG
Trigger: GCCAAGCAAGCCAAACTGCAACGCGCAGAAAGCCTC...ACTACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CAA 90 bp CCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACAGAGGCTTTCTGCGCGTaGCAGTTTGGCTTGCTTGGC +
Preference number: 5 (lower is better)
Translates to: PSLVRHVDFTRCCAHISTEAFCA*QFGLLG
Trigger: GCCAAGCAAGCCAAACTGCAACGCGCAGAAAGCCTC...TGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CAA 90 bp GTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCTCTACTAGGGTGTACTTCTaGGCTCTCTGCCGCCGCTTC +
Preference number: 5 (lower is better)
Translates to: VDFTRCCAHISTCYRHSSTRVYF*ALCRRF
Trigger: GAAGCGGCGGCAGAGAGCCAAGAAGTACACCCTAGT...AGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp TGTGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGCTGTCCCAGTCGGATaGATTAGTAAGGCTGCGGGC +
Preference number: 5 (lower is better)
Translates to: CAHISTCYRHSSLRSFSVAVPVG*ISKAAG
Trigger: GCCCGCAGCCTTACTAATCAATCCGACTGGGACAGC...TACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTGCTGTCCCAGTCGGATaGATTAGTAAGGCTGCGGGC +
Preference number: 5 (lower is better)
Translates to: DTLISQDAVHISLHATGTAVPVG*ISKAAG
Trigger: GCCCGCAGCCTTACTAATCAATCCGACTGGGACAGC...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTTTTGTCACAGCTGGCTaGGCCGAGGGGCTCTTGGAT +
Preference number: 5 (lower is better)
Translates to: DTLISQDAVHISLHATGTFVTAG*AEGLLD
Trigger: ATCCAAGAGCCCCTCGGCCAAGCCAGCTGTGACAAA...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTGTGCAAGAAACCCCGTaGATCGCTAAGAGCTGGTCC +
Preference number: 5 (lower is better)
Translates to: DTLISQDAVHISLHATGTVQETP*IAKSWS
Trigger: GGACCAGCTCTTAGCGATCAACGGGGTTTCTTGCAC...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CAA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCTGGCATGGGAGAAGTaGGTGCAAGAAACCCCGTTG +
Preference number: 5 (lower is better)
Translates to: DTLISQDAVHISLHATGTLAWEK*VQETPL
Trigger: CAACGGGGTTTCTTGCACCAACTTCTCCCATGCCAG...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CAA 90 bp GTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTCCTCTCTGGCATGGGAGAAGTaGGTGCAAGAAACCCCGTTG +
Preference number: 5 (lower is better)
Translates to: VDFTRCCAHISTCYRHSSLAWEK*VQETPL
Trigger: CAACGGGGTTTCTTGCACCAACTTCTCCCATGCCAG...AGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CAA 90 bp TGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGTGCGTTGCAGTTTGGCTaGCTTGGCCTTCTGGGTGTA +
Preference number: 5 (lower is better)
Translates to: CTYLYMLQALLSQEFFCSALQFG*LGLLGV
Trigger: TACACCCAGAAGGCCAAGCAAGCCAAACTGCAACGC...ACTACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS-3UTR CAA 90 bp TACCTAACACTAAAGTGCTGCCCACAGAGAGAAACACAAATGCAAAAGGAAAACGACAGCAGCTCCGGGTaGGGCGAGTTCTTCGTCTCT +
Preference number: 5 (lower is better)
Translates to: YLTLKCCPQRETQMQKENDSSSG*GEFFVS
Trigger: AGAGACGAAGAACTCGCCCAACCCGGAGCTGCTGTC...GTTTTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp AGCACACATGTATGTGTATTTGATGTCTTTCTAGAGCAGATCCTAACCACACATGTAGGGGGTGGAGTTTaGGGAGCCATTGGAGGCGGG +
Preference number: 5 (lower is better)
Translates to: STHVCVFDVFLEQILTTHVGGGV*GAIGGG
Trigger: CCCGCCTCCAATGGCTCCCAAAACTCCACCCCCTAC...ATGTGTGGTTAGGATCTGCTCTAGAAAGACATCAAATACACATACATGTGTGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTGGTGGGGCACGGATGTaGGGTGAGTATTTCCAGGAT +
Preference number: 5 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISGGARM*GEYFQD
Trigger: ATCCTGGAAATACTCACCCAACATCCGTGCCCCACC...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp GACACGTTGATTTCACAAGATGCTGTGCACATATCTCTACATGCTACAGGCACTGGTGGGGCACGGATGTaGGGTGAGTATTTCCAGGAT +
Preference number: 5 (lower is better)
Translates to: DTLISQDAVHISLHATGTGGARM*GEYFQD
Trigger: ATCCTGGAAATACTCACCCAACATCCGTGCCCCACC...AGTGCCTGTAGCATGTAGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp TGTGCACATATCTCTACATGCTACAGGCACTCCTCTCTCAGGAGTTTTTCTGTAGCAATGGTCCGGCATTaGGTTCTTGCCTCCTTTACG +
Preference number: 5 (lower is better)
Translates to: CAHISTCYRHSSLRSFSVAMVRH*VLASFT
Trigger: CGTAAAGGAGGCAAGAACCAAATGCCGGACCATTGC...TACAGAAAAACTCCTGAGAGAGGAGTGCCTGTAGCATGTAGAGATATGTGCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp AGCACACATGTATGTGTATTTGATGTCTTTCTAGAGCAGATCCTAACCACACATACTAGGGTGTACTTCTaGGCTCTCTGCCGCCGCTTC +
Preference number: 5 (lower is better)
Translates to: STHVCVFDVFLEQILTTHTRVYF*ALCRRF
Trigger: GAAGCGGCGGCAGAGAGCCAAGAAGTACACCCTAGT...ATGTGTGGTTAGGATCTGCTCTAGAAAGACATCAAATACACATACATGTGTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp TCTCCCAGTCTTGTCAGACACGTTGATTTCACAAGATGCTGTGCACATATCTCTAAGTGGGGCCAGGAGTaGAAGAACCCTCATCAAAAC +
Preference number: 5 (lower is better)
Translates to: SPSLVRHVDFTRCCAHISKWGQE*KNPHQN
Trigger: GTTTTGATGAGGGTTCTTCAACTCCTGGCCCCACTT...AGAGATATGTGCACAGCATCTTGTGAAATCAACGTGTCTGACAAGACTGGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp TACCTAACACTAAAGTGCTGCCCACAGAGAGAAACACAAATGCAAAAGGAAAACGCAATGGTCCGGCATTaGGTTCTTGCCTCCTTTACG +
Preference number: 5 (lower is better)
Translates to: YLTLKCCPQRETQMQKENAMVRH*VLASFT
Trigger: CGTAAAGGAGGCAAGAACCAAATGCCGGACCATTGC...GTTTTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp AGCACACATGTATGTGTATTTGATGTCTTTCTAGAGCAGATCCTAACCACACATATGAAATCCAGGGCCTaGATACCCTGCTTAGGGGTC +
Preference number: 5 (lower is better)
Translates to: STHVCVFDVFLEQILTTHMKSRA*IPCLGV
Trigger: GACCCCTAAGCAGGGTATCAAGGCCCTGGATTTCAT...ATGTGTGGTTAGGATCTGCTCTAGAAAGACATCAAATACACATACATGTGTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS-3UTR CAA 90 bp TACCTAACACTAAAGTGCTGCCCACAGAGAGAAACACAAATGCAAAAGGAAAACAAGTGGGGCCAGGAGTaGAAGAACCCTCATCAAAAC +
Preference number: 5 (lower is better)
Translates to: YLTLKCCPQRETQMQKENKWGQE*KNPHQN
Trigger: GTTTTGATGAGGGTTCTTCAACTCCTGGCCCCACTT...GTTTTCCTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CCA 72 bp GGGCAGCCGGCACAGAGATGCGCTGCTCCCGAACGCTaGCAGGCTCGGGGACCGCGGGGCCCGGCGCCTCCG +
Preference number: 6 (lower is better)
Translates to: GQPAQRCAAPER*QARGPRGPAPP
Trigger: CGGAGGCGCCGGGCCCCGCGGTCCCCGAGCCTGCCAGCGTTCGGGAGCAGCGCATCTCTGTGCCGGCTGCCC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS GCA 72 bp CCTGCAGGATGCCGGTGCGGGCAGCCGGCACAGAGATaGGCTGCTCCCGAACGCTGGCAGGCTCGGGGACCG +
Preference number: 6 (lower is better)
Translates to: PAGCRCGQPAQR*AAPERWQARGP
Trigger: CGGTCCCCGAGCCTGCCAGCGTTCGGGAGCAGCGCATCTCTGTGCCGGCTGCCCGCACCGGCATCCTGCAGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CCA 72 bp GGTCATGGCAGCAGCGCTAGGAGGAGTGGGCGGTTCTaGGGCGCCTCCTGGTGTAACAGGCCGGCTTGGGGC +
Preference number: 6 (lower is better)
Translates to: GHGSSARRSGRF*GASWCNRPAWG
Trigger: GCCCCAAGCCGGCCTGTTACACCAGGAGGCGCCCCAGAACCGCCCACTCCTCCTAGCGCTGCTGCCATGACC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS GCA 72 bp CACTGGTGCCCTGCCCCAGGCCTCCAGACATGGGCCTaGAACCCTGTTCTGGTGGCTGAGAACCGGGGCCTG +
Preference number: 6 (lower is better)
Translates to: HWCPAPGLQTWA*NPVLVAENRGL
Trigger: CAGGCCCCGGTTCTCAGCCACCAGAACAGGGTTGCAGGCCCATGTCTGGAGGCCTGGGGCAGGGCACCAGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS GCA 72 bp CACCTCATCAGGTGGGGCTCCTGGAAGGGAAGGCCTTaGAGGACCTCTGCGGCGGGTTCGGCGTGGCTTCTC +
Preference number: 6 (lower is better)
Translates to: HLIRWGSWKGRP*RTSAAGSAWLL
Trigger: GAGAAGCCACGCCGAACCCGCCGCAGAGGTCCTGCAAGGCCTTCCCTTCCAGGAGCCCCACCTGATGAGGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS GCA 72 bp CTCTGCCGTTTGGCAAATAGCTCCCCGCCCCTCCCTTaGAGCCTTGGCGGCTCAGGGATTCCCACCATCGGG +
Preference number: 6 (lower is better)
Translates to: LCRLANSSPPLP*SLGGSGIPTIG
Trigger: CCCGATGGTGGGAATCCCTGAGCCGCCAAGGCTGCAAGGGAGGGGCGGGGAGCTATTTGCCAAACGGCAGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CCA 72 bp CTGGAGGCTACCCGCTGGCGCTGCTGTTCAAAGAGCTaGACCCCTCGCCCAGAGACCTCACTTAGCTGCCCT +
Preference number: 6 (lower is better)
Translates to: LEATRWRCCSKS*TPRPETSLSCP
Trigger: AGGGCAGCTAAGTGAGGTCTCTGGGCGAGGGGTCCAGCTCTTTGAACAGCAGCGCCAGCGGGTAGCCTCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CCA 72 bp TGGGGACTGCAGACTCTGCCCATTAAGCATAGCTGCTaGGCCCACCTGAGCCAGCTCCTGGGAGCTGGAGGC +
Preference number: 6 (lower is better)
Translates to: WGLQTLPIKHSC*AHLSQLLGAGG
Trigger: GCCTCCAGCTCCCAGGAGCTGGCTCAGGTGGGCCCAGCAGCTATGCTTAATGGGCAGAGTCTGCAGTCCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CCA 72 bp TGGGGCGCCTCCTGGTGTAACAGGCCGGCTTGGGGCTaGGATGTACAAGGAACTGGTAGCGGTCACAGGACC +
Preference number: 6 (lower is better)
Translates to: WGASWCNRPAWG*DVQGTGSGHRT
Trigger: GGTCCTGTGACCGCTACCAGTTCCTTGTACATCCCAGCCCCAAGCCGGCCTGTTACACCAGGAGGCGCCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CCA 72 bp CGGTTCTGGGGCGCCTCCTGGTGTAACAGGCCGGCTTaGGGCTGGGATGTACAAGGAACTGGTAGCGGTCAC +
Preference number: 6 (lower is better)
Translates to: RFWGASWCNRPA*GWDVQGTGSGH
Trigger: GTGACCGCTACCAGTTCCTTGTACATCCCAGCCCCAAGCCGGCCTGTTACACCAGGAGGCGCCCCAGAACCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CAA 90 bp CAGACAGGTACACCTCATCAGGTGGGGCTCCTGGAAGGGAAGGCCTaGCAGGACCTCTGCGGCGGGTTCGGCGTGGCTTCTCTTGTGTGG +
Preference number: 6 (lower is better)
Translates to: QTGTPHQVGLLEGKA*QDLCGGFGVASLVW
Trigger: CCACACAAGAGAAGCCACGCCGAACCCGCCGCAGAGGTCCTGCAAGGCCTTCCCTTCCAGGAGCCCCACCTGATGAGGTGTACCTGTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CAA 90 bp CCAGATGTAGCTTCCACCACGTACCTATCGGCACGGCTCTGCCGTTaGGCAAATAGCTCCCCGCCCCTCCCTTGCAGCCTTGGCGGCTCA +
Preference number: 6 (lower is better)
Translates to: PDVASTTYLSARLCR*ANSSPPLPCSLGGS
Trigger: TGAGCCGCCAAGGCTGCAAGGGAGGGGCGGGGAGCTATTTGCCAAACGGCAGAGCCGTGCCGATAGGTACGTGGTGGAAGCTACATCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS GCA 72 bp AGGTGGGGACTGCAGACTCTGCCCATTAAGCATAGCTaGTGGGCCCACCTGAGCCAGCTCCTGGGAGCTGGA +
Preference number: 6 (lower is better)
Translates to: RWGLQTLPIKHS*WAHLSQLLGAG
Trigger: TCCAGCTCCCAGGAGCTGGCTCAGGTGGGCCCAGCAGCTATGCTTAATGGGCAGAGTCTGCAGTCCCCACCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS GCA 72 bp TCCGCACCGCCCGCCCGAGGTTTTTCATCCAGGTTCTaGACTAGTGACAGCAGCTCCGGGTTGGGCGAGTTC +
Preference number: 6 (lower is better)
Translates to: SAPPARGFSSRF*TSDSSSGLGEF
Trigger: GAACTCGCCCAACCCGGAGCTGCTGTCACTAGTGCAGAACCTGGATGAAAAACCTCGGGCGGGCGGTGCGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CCA 72 bp GGAAGGCCTTGCAGGACCTCTGCGGCGGGTTCGGCGTaGCTTCTCTTGTGTGGCAGGGCCATCAACATCACT +
Preference number: 6 (lower is better)
Translates to: GRPCRTSAAGSA*LLLCGRAINIT
Trigger: AGTGATGTTGATGGCCCTGCCACACAAGAGAAGCCACGCCGAACCCGCCGCAGAGGTCCTGCAAGGCCTTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CCA 72 bp AAGGAACTGGTAGCGGTCACAGGACCAGAGGAGCGTTaGGTGCTGCTAGAAGCCCCAGAGACCGGCGTGTGG +
Preference number: 6 (lower is better)
Translates to: KELVAVTGPEER*VLLEAPETGVW
Trigger: CCACACGCCGGTCTCTGGGGCTTCTAGCAGCACCCAACGCTCCTCTGGTCCTGTGACCGCTACCAGTTCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CCA 72 bp GAGCCCTCGCGACCCAGGTTTAGGAGCCACGGGAGGTaGAGTCTTAGGCGTTGTAGGGGGTGGAGTTTTGGG +
Preference number: 6 (lower is better)
Translates to: EPSRPRFRSHGR*SLRRCRGWSFG
Trigger: CCCAAAACTCCACCCCCTACAACGCCTAAGACTCCACCTCCCGTGGCTCCTAAACCTGGGTCGCGAGGGCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CCA 72 bp CTTCCACCACGTACCTATCGGCACGGCTCTGCCGTTTaGCAAATAGCTCCCCGCCCCTCCCTTGCAGCCTTG +
Preference number: 6 (lower is better)
Translates to: LPPRTYRHGSAV*QIAPRPSLAAL
Trigger: CAAGGCTGCAAGGGAGGGGCGGGGAGCTATTTGCCAAACGGCAGAGCCGTGCCGATAGGTACGTGGTGGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CCA 72 bp CAGGCCTCCAGACATGGGCCTGCAACCCTGTTCTGGTaGCTGAGAACCGGGGCCTGGCTACTTGGAAACCAC +
Preference number: 6 (lower is better)
Translates to: QASRHGPATLFW*LRTGAWLLGNH
Trigger: GTGGTTTCCAAGTAGCCAGGCCCCGGTTCTCAGCCACCAGAACAGGGTTGCAGGCCCATGTCTGGAGGCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CCA 72 bp GGTCTTGGAGCTCAGGAGCTGGGGCTTTGTCACAGCTaGCTTGGCCGAGGGGCTCTTGGATGGTGGTCTCCA +
Preference number: 6 (lower is better)
Translates to: GLGAQELGLCHS*LGRGALGWWSP
Trigger: TGGAGACCACCATCCAAGAGCCCCTCGGCCAAGCCAGCTGTGACAAAGCCCCAGCTCCTGAGCTCCAAGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119483.2
CDS CAA 72 bp GCTTCCACCACGTACCTATCGGCACGGCTCTGCCGTTaGGCAAATAGCTCCCCGCCCCTCCCTTGCAGCCTT +
Preference number: 6 (lower is better)
Translates to: ASTTYLSARLCR*ANSSPPLPCSL
Trigger: AAGGCTGCAAGGGAGGGGCGGGGAGCTATTTGCCAAACGGCAGAGCCGTGCCGATAGGTACGTGGTGGAAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CAA 90 bp TGGGATGTACAAGGAACTGGTAGCGGTCACAGGACCAGAGGAGCGTaGGGTGCTGCTAGAAGCCCCAGAGACCGGCGTGTGGCTGGGAAC +
Preference number: 6 (lower is better)
Translates to: WDVQGTGSGHRTRGA*GAARSPRDRRVAGN
Trigger: GTTCCCAGCCACACGCCGGTCTCTGGGGCTTCTAGCAGCACCCAACGCTCCTCTGGTCCTGTGACCGCTACCAGTTCCTTGTACATCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CAA 90 bp CGCCCTGAGGCGTCGATGAGGGTCATGGCACTGGCATGGGAGAAGTaGGTGCAAGAAACCCCGTTGATCGCTAAGAGCTGGTCCCTCTCC +
Preference number: 6 (lower is better)
Translates to: RPEASMRVMALAWEK*VQETPLIAKSWSLS
Trigger: GGAGAGGGACCAGCTCTTAGCGATCAACGGGGTTTCTTGCACCAACTTCTCCCATGCCAGTGCCATGACCCTCATCGACGCCTCAGGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS GCA 72 bp TCGCTAAGAGCTGGTCCCTCTCCCGGAGTCCTGCTCTaGCAGCCTGGCTCCGTCTTCGGATCTGTAAAGGTT +
Preference number: 6 (lower is better)
Translates to: SLRAGPSPGVLL*QPGSVFGSVKV
Trigger: AACCTTTACAGATCCGAAGACGGAGCCAGGCTGGCAGAGCAGGACTCCGGGAGAGGGACCAGCTCTTAGCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057090.12
CDS GCA 72 bp CTTGGCCTTCTGGGTGTAGGTGGTAGTGAGATCTTCTaGCACTGGGTGGGGGACAGGGCCCACCATAGGGAT +
Preference number: 6 (lower is better)
Translates to: LGLLGVGGSEIF*HWVGDRAHHRD
Trigger: ATCCCTATGGTGGGCCCTGTCCCCCACCCAGTGGCAGAAGATCTCACTACCACCTACACCCAGAAGGCCAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CCA 72 bp AAGTTGGTGCAAGAAACCCCGTTGATCGCTAAGAGCTaGTCCCTCTCCCGGAGTCCTGCTCTGCCAGCCTGG +
Preference number: 6 (lower is better)
Translates to: KLVQETPLIAKS*SLSRSPALPAW
Trigger: CCAGGCTGGCAGAGCAGGACTCCGGGAGAGGGACCAGCTCTTAGCGATCAACGGGGTTTCTTGCACCAACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CCA 72 bp CGCCCTGAGGCGTCGATGAGGGTCATGGCACTGGCATaGGAGAAGTTGGTGCAAGAAACCCCGTTGATCGCT +
Preference number: 6 (lower is better)
Translates to: RPEASMRVMALA*EKLVQETPLIA
Trigger: AGCGATCAACGGGGTTTCTTGCACCAACTTCTCCCATGCCAGTGCCATGACCCTCATCGACGCCTCAGGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CCA 72 bp AGTAAGCTTCGCTGTCAGGGGGTGAACGAAGGCTTGTaGGCTGAAGAGCCTGGGAAACAGGAGCACCTGGGG +
Preference number: 6 (lower is better)
Translates to: SKLRCQGVNEGL*AEEPGKQEHLG
Trigger: CCCCAGGTGCTCCTGTTTCCCAGGCTCTTCAGCCCACAAGCCTTCGTTCACCCCCTGACAGCGAAGCTTACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CCA 72 bp TTCTGCAGGGCTGTCAGACAGGTACACCTCATCAGGTaGGGCTCCTGGAAGGGAAGGCCTTGCAGGACCTCT +
Preference number: 6 (lower is better)
Translates to: FCRAVRQVHLIR*GSWKGRPCRTS
Trigger: AGAGGTCCTGCAAGGCCTTCCCTTCCAGGAGCCCCACCTGATGAGGTGTACCTGTCTGACAGCCCTGCAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CCA 72 bp CATCCAGGTTCTGCACTAGTGACAGCAGCTCCGGGTTaGGCGAGTTCTTCGTCTCTTCCTTCCCAGGCCGGA +
Preference number: 6 (lower is better)
Translates to: HPGSALVTAAPG*ASSSSLPSQAG
Trigger: TCCGGCCTGGGAAGGAAGAGACGAAGAACTCGCCCAACCCGGAGCTGCTGTCACTAGTGCAGAACCTGGATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CCA 72 bp GAGCCAAGGGCTCTGCAGTGGGCTGGGGTGCAGGAGTaGAAAATCTGCGGATCTCCTGAACTCGGGCAGTTT +
Preference number: 6 (lower is better)
Translates to: EPRALQWAGVQE*KICGSPELGQF
Trigger: AAACTGCCCGAGTTCAGGAGATCCGCAGATTTTCCACTCCTGCACCCCAGCCCACTGCAGAGCCCTTGGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CAA 72 bp TGCAGGACCTCTGCGGCGGGTTCGGCGTGGCTTCTCTaGTGTGGCAGGGCCATCAACATCACTATCTGTCTC +
Preference number: 6 (lower is better)
Translates to: CRTSAAGSAWLL*CGRAINITICL
Trigger: GAGACAGATAGTGATGTTGATGGCCCTGCCACACAAGAGAAGCCACGCCGAACCCGCCGCAGAGGTCCTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CAA 72 bp TCATCCAGGTTCTGCACTAGTGACAGCAGCTCCGGGTaGGGCGAGTTCTTCGTCTCTTCCTTCCCAGGCCGG +
Preference number: 6 (lower is better)
Translates to: SSRFCTSDSSSG*GEFFVSSFPGR
Trigger: CCGGCCTGGGAAGGAAGAGACGAAGAACTCGCCCAACCCGGAGCTGCTGTCACTAGTGCAGAACCTGGATGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CAA 90 bp AGGGTCATGGCACTGGCATGGGAGAAGTTGGTGCAAGAAACCCCGTaGATCGCTAAGAGCTGGTCCCTCTCCCGGAGTCCTGCTCTGCCA +
Preference number: 6 (lower is better)
Translates to: RVMALAWEKLVQETP*IAKSWSLSRSPALP
Trigger: TGGCAGAGCAGGACTCCGGGAGAGGGACCAGCTCTTAGCGATCAACGGGGTTTCTTGCACCAACTTCTCCCATGCCAGTGCCATGACCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CAA 90 bp GGAAGGCCTTGCAGGACCTCTGCGGCGGGTTCGGCGTGGCTTCTCTaGTGTGGCAGGGCCATCAACATCACTATCTGTCTCTCCATAGTA +
Preference number: 6 (lower is better)
Translates to: GRPCRTSAAGSAWLL*CGRAINITICLSIV
Trigger: TACTATGGAGAGACAGATAGTGATGTTGATGGCCCTGCCACACAAGAGAAGCCACGCCGAACCCGCCGCAGAGGTCCTGCAAGGCCTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS TCA 72 bp CACTGGCATGGGAGAAGTTGGTGCAAGAAACCCCGTTaGTCGCTAAGAGCTGGTCCCTCTCCCGGAGTCCTG +
Preference number: 6 (lower is better)
Translates to: HWHGRSWCKKPR*SLRAGPSPGVL
Trigger: CAGGACTCCGGGAGAGGGACCAGCTCTTAGCGATCAACGGGGTTTCTTGCACCAACTTCTCCCATGCCAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS TCA 72 bp GTCCCAGTCGGATTGATTAGTAAGGCTGCGGGCGTCTaGGAAGGTCTCCTCGTCCAGCTCCGACTCACTCGT +
Preference number: 6 (lower is better)
Translates to: VPVGLISKAAGV*EGLLVQLRLTR
Trigger: ACGAGTGAGTCGGAGCTGGACGAGGAGACCTTCTCAGACGCCCGCAGCCTTACTAATCAATCCGACTGGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CCA 72 bp GACCTCTGCGGCGGGTTCGGCGTGGCTTCTCTTGTGTaGCAGGGCCATCAACATCACTATCTGTCTCTCCAT +
Preference number: 6 (lower is better)
Translates to: DLCGGFGVASLV*QGHQHHYLSLH
Trigger: ATGGAGAGACAGATAGTGATGTTGATGGCCCTGCCACACAAGAGAAGCCACGCCGAACCCGCCGCAGAGGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CCA 72 bp GTCGCCCTGGCTGGGAGAGCCAGTTTTAACAGGTGCTaGTTCTGCAGGGCTGTCAGACAGGTACACCTCATC +
Preference number: 6 (lower is better)
Translates to: VALAGRASFNRC*FCRAVRQVHLI
Trigger: GATGAGGTGTACCTGTCTGACAGCCCTGCAGAACCAGCACCTGTTAAAACTGGCTCTCCCAGCCAGGGCGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CCA 72 bp TCCTCCCAAGATGGGGAGCTTACACGGCTGTCGCCCTaGCTGGGAGAGCCAGTTTTAACAGGTGCTGGTTCT +
Preference number: 6 (lower is better)
Translates to: SSQDGELTRLSP*LGEPVLTGAGS
Trigger: AGAACCAGCACCTGTTAAAACTGGCTCTCCCAGCCAGGGCGACAGCCGTGTAAGCTCCCCATCTTGGGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CCA 72 bp CTTCTGGGTGTAGGTGGTAGTGAGATCTTCTGCCACTaGGTGGGGGACAGGGCCCACCATAGGGATGAGATG +
Preference number: 6 (lower is better)
Translates to: LLGVGGSEIFCH*VGDRAHHRDEM
Trigger: CATCTCATCCCTATGGTGGGCCCTGTCCCCCACCCAGTGGCAGAAGATCTCACTACCACCTACACCCAGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CAA 72 bp GCACTGGCATGGGAGAAGTTGGTGCAAGAAACCCCGTaGATCGCTAAGAGCTGGTCCCTCTCCCGGAGTCCT +
Preference number: 6 (lower is better)
Translates to: ALAWEKLVQETP*IAKSWSLSRSP
Trigger: AGGACTCCGGGAGAGGGACCAGCTCTTAGCGATCAACGGGGTTTCTTGCACCAACTTCTCCCATGCCAGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CAA 90 bp CGAGGTTTTTCATCCAGGTTCTGCACTAGTGACAGCAGCTCCGGGTaGGGCGAGTTCTTCGTCTCTTCCTTCCCAGGCCGGAACATCTGC +
Preference number: 6 (lower is better)
Translates to: RGFSSRFCTSDSSSG*GEFFVSSFPGRNIC
Trigger: GCAGATGTTCCGGCCTGGGAAGGAAGAGACGAAGAACTCGCCCAACCCGGAGCTGCTGTCACTAGTGCAGAACCTGGATGAAAAACCTCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CAA 90 bp GGTTCTTGCCTCCTTTACGCTTTTCTCCTGGAGGCTTTCTGCGCGTaGCAGTTCTGCATAGAACGGGTCTTGGAGCTCAGGAGCTGGGGC +
Preference number: 6 (lower is better)
Translates to: GSCLLYAFLLEAFCA*QFCIERVLELRSWG
Trigger: GCCCCAGCTCCTGAGCTCCAAGACCCGTTCTATGCAGAACTGCAACGCGCAGAAAGCCTCCAGGAGAAAAGCGTAAAGGAGGCAAGAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119483.2
CDS TCA 72 bp TGTTACCCTCCTCACAGTAAGGACAAGTTGACGCCCTaGGGCGTCGATGAGGGTCATGGCACTGGCATGGGA +
Preference number: 6 (lower is better)
Translates to: CYPPHSKDKLTP*GVDEGHGTGMG
Trigger: TCCCATGCCAGTGCCATGACCCTCATCGACGCCTCAGGGCGTCAACTTGTCCTTACTGTGAGGAGGGTAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS TCA 72 bp GAGAGACTCTTGATGGTCTGGGTTAGGGACAGGGGTTaGGGCCAGCTCTGCCCTCCAAATGGGTTCGTCCAA +
Preference number: 6 (lower is better)
Translates to: ERLLMVWVRDRG*GQLCPPNGFVQ
Trigger: TTGGACGAACCCATTTGGAGGGCAGAGCTGGCCTCAACCCCTGTCCCTAACCCAGACCATCAAGAGTCTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS GCA 72 bp CTGGCTGGGAGAGCCAGTTTTAACAGGTGCTGGTTCTaGAGGGCTGTCAGACAGGTACACCTCATCAGGTGG +
Preference number: 6 (lower is better)
Translates to: LAGRASFNRCWF*RAVRQVHLIRW
Trigger: CCACCTGATGAGGTGTACCTGTCTGACAGCCCTGCAGAACCAGCACCTGTTAAAACTGGCTCTCCCAGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CAA 90 bp TGGGGGCTGCTGTTAGCAGGGATGCAATGGTCCGGCATTTGGTTCTaGCCTCCTTTACGCTTTTCTCCTGGAGGCTTTCTGCGCGTTGCA +
Preference number: 6 (lower is better)
Translates to: WGLLLAGMQWSGIWF*PPLRFSPGGFLRVA
Trigger: TGCAACGCGCAGAAAGCCTCCAGGAGAAAAGCGTAAAGGAGGCAAGAACCAAATGCCGGACCATTGCATCCCTGCTAACAGCAGCCCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS TCA 72 bp CCTTCATCTGTTACCCTCCTCACAGTAAGGACAAGTTaGCGCCCTGAGGCGTCGATGAGGGTCATGGCACTG +
Preference number: 6 (lower is better)
Translates to: PSSVTLLTVRTS*RPEASMRVMAL
Trigger: CAGTGCCATGACCCTCATCGACGCCTCAGGGCGTCAACTTGTCCTTACTGTGAGGAGGGTAACAGATGAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS TCA 72 bp GCAAGGTCTTGTAACTCCTGCCCCCTAGTGGCTGCATaGAGTTACAGGCTTCAGCCCCGAGGCTTAAAGCGT +
Preference number: 6 (lower is better)
Translates to: ARSCNSCPLVAA*SYRLQPRGLKR
Trigger: ACGCTTTAAGCCTCGGGGCTGAAGCCTGTAACTTCATGCAGCCACTAGGGGGCAGGAGTTACAAGACCTTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CAA 90 bp GGTTCTTGCCTCCTTTACGCTTTTCTCCTGGAGGCTTTCTGCGCGTaGCAGTTTGGCTTGCTTGGCCTTCTGGGTGTAGGTGGTAGTGAG +
Preference number: 6 (lower is better)
Translates to: GSCLLYAFLLEAFCA*QFGLLGLLGVGGSE
Trigger: CTCACTACCACCTACACCCAGAAGGCCAAGCAAGCCAAACTGCAACGCGCAGAAAGCCTCCAGGAGAAAAGCGTAAAGGAGGCAAGAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS TCA 72 bp ATCTGTCTCTCCATAGTAAGCTTCGCTGTCAGGGGGTaGACGAAGGCTTGTGGGCTGAAGAGCCTGGGAAAC +
Preference number: 6 (lower is better)
Translates to: ICLSIVSFAVRG*TKACGLKSLGN
Trigger: GTTTCCCAGGCTCTTCAGCCCACAAGCCTTCGTTCACCCCCTGACAGCGAAGCTTACTATGGAGAGACAGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS GCA 72 bp TCTTGCCTCCTTTACGCTTTTCTCCTGGAGGCTTTCTaGGCGTTGCAGTTTGGCTTGCTTGGCCTTCTGGGT +
Preference number: 6 (lower is better)
Translates to: SCLLYAFLLEAF*ALQFGLLGLLG
Trigger: ACCCAGAAGGCCAAGCAAGCCAAACTGCAACGCGCAGAAAGCCTCCAGGAGAAAAGCGTAAAGGAGGCAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CCA 72 bp AGTGAGGGTTGGGGGCTGCTGTTAGCAGGGATGCAATaGTCCGGCATTTGGTTCTTGCCTCCTTTACGCTTT +
Preference number: 6 (lower is better)
Translates to: SEGWGLLLAGMQ*SGIWFLPPLRF
Trigger: AAAGCGTAAAGGAGGCAAGAACCAAATGCCGGACCATTGCATCCCTGCTAACAGCAGCCCCCAACCCTCACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2
CDS CAA 72 bp TTTCTCCTGGAGGCTTTCTGCGCGTTGCAGTTTGGCTaGCTTGGCCTTCTGGGTGTAGGTGGTAGTGAGATC +
Preference number: 6 (lower is better)
Translates to: FLLEAFCALQFG*LGLLGVGGSEI
Trigger: GATCTCACTACCACCTACACCCAGAAGGCCAAGCAAGCCAAACTGCAACGCGCAGAAAGCCTCCAGGAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CAA 72 bp CTCCTTTACGCTTTTCTCCTGGAGGCTTTCTGCGCGTaGCAGTTTGGCTTGCTTGGCCTTCTGGGTGTAGGT +
Preference number: 6 (lower is better)
Translates to: LLYAFLLEAFCA*QFGLLGLLGVG
Trigger: ACCTACACCCAGAAGGCCAAGCAAGCCAAACTGCAACGCGCAGAAAGCCTCCAGGAGAAAAGCGTAAAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CAA 90 bp CTTTACGCTTTTCTCCTGGAGGCTTTCTGCGCGTTGCAGTTTGGCTaGCTTGGCCTTCTGGGTGTAGGTGGTAGTGAGATCTTCTGCCAC +
Preference number: 6 (lower is better)
Translates to: LYAFLLEAFCALQFG*LGLLGVGGSEIFCH
Trigger: GTGGCAGAAGATCTCACTACCACCTACACCCAGAAGGCCAAGCAAGCCAAACTGCAACGCGCAGAAAGCCTCCAGGAGAAAAGCGTAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CCA 72 bp CGGCATTTGGTTCTTGCCTCCTTTACGCTTTTCTCCTaGAGGCTTTCTGCGCGTTGCAGTTTGGCTTGCTTG +
Preference number: 6 (lower is better)
Translates to: RHLVLASFTLFS*RLSARCSLACL
Trigger: CAAGCAAGCCAAACTGCAACGCGCAGAAAGCCTCCAGGAGAAAAGCGTAAAGGAGGCAAGAACCAAATGCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
CDS CAA 72 bp CTGTTAGCAGGGATGCAATGGTCCGGCATTTGGTTCTaGCCTCCTTTACGCTTTTCTCCTGGAGGCTTTCTG +
Preference number: 6 (lower is better)
Translates to: LLAGMQWSGIWF*PPLRFSPGGFL
Trigger: CAGAAAGCCTCCAGGAGAAAAGCGTAAAGGAGGCAAGAACCAAATGCCGGACCATTGCATCCCTGCTAACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057090.12
ENSMUST00000117386.2
ENSMUST00000119483.2