RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SYNJ1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022973

Ensembl transcript IDs: ENSMUST00000118390.10, ENSMUST00000121759.8, ENSMUST00000125032.3, ENSMUST00000129743.2, ENSMUST00000130813.3, ENSMUST00000154276.8, ENSMUST00000170853.8, ENSMUST00000231472.2, ENSMUST00000231524.2

Found 696 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGCTGGGAAACGGGTTTGCAGAACTGCCCATACTCTCCTGTGACTTaGTTTCCTCTGGACCTGGAGGCCTGGTTGGCATGCAACTTACAG +
Preference number: 1 (lower is better)
Translates to: GWETGLQNCPYSPVT*FPLDLEAWLACNLQ
Trigger: CTGTAAGTTGCATGCCAACCAGGCCTCCAGGTCCAGAGGAAAGCAAGTCACAGGAGAGTATGGGCAGTTCTGCAAACCCGTTTCCCAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR TCA 90 bp TTGTCCTCAAAGCCACCAAGCGAACTTGAAGCCTTGCTCGTGTCATaGCTGAGAGGCATGAGAGGAGGGAAGGGACTGTTGGGAACAGGC +
Preference number: 1 (lower is better)
Translates to: LSSKPPSELEALLVS*LRGMRGGKGLLGTG
Trigger: GCCTGTTCCCAACAGTCCCTTCCCTCCTCTCATGCCTCTCAGTCATGACACGAGCAAGGCTTCAAGTTCGCTTGGTGGCTTTGAGGACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR TCA 90 bp ACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCTaGGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTTCAGTTT +
Preference number: 1 (lower is better)
Translates to: TRQSYCSADITVVHT*GSHCSGLRSTLLQF
Trigger: AAACTGAAGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR GCA 90 bp CTATCTGTCCACGTGACCGACCACGTCCAGACGGCCAACTGTAAATaGCCAGAGAAAGGCATCATAGAGGTACAGAGGAGGAAGGTAATG +
Preference number: 1 (lower is better)
Translates to: LSVHVTDHVQTANCK*PEKGIIEVQRRKVM
Trigger: CATTACCTTCCTCCTCTGTACCTCTATGATGCCTTTCTCTGGGCATTTACAGTTGGCCGTCTGGACGTGGTCGGTCACGTGGACAGATAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR GCA 90 bp GTTTCAGCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTaGAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGG +
Preference number: 1 (lower is better)
Translates to: VSAATRLPDKAELLL*RHYSGSHLRESLLR
Trigger: CCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGCTGAAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR GCA 90 bp TGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTaGTTCAGTTTTCTAAAGTGGATTAGCTTGCTAATGGGGAGTGGA +
Preference number: 1 (lower is better)
Translates to: WFTPEGVTAQGCDPH*FSFLKWISLLMGSG
Trigger: TCCACTCCCCATTAGCAAGCTAATCCACTTTAGAAAACTGAAGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR CCA 90 bp CCTAATTCAGACCACTCAACAGCTGAAAGCAGAGCTCCAGGCAACTaGCAAACAGAAAGGTATGGAAGGGCAAAGGGCCACGCAGAGAAA +
Preference number: 1 (lower is better)
Translates to: PNSDHSTAESRAPGN*QTERYGRAKGHAEK
Trigger: TTTCTCTGCGTGGCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGAGTGGTCTGAATTAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR TCA 90 bp ACTGTTGGGAACAGGCTCTTCTTTGGAGAGCCAAGAAGTTGCCTCTaGTTCTTGGGACTGAACTCTAAATGGGTTTCCAGGGGCAGCAGT +
Preference number: 1 (lower is better)
Translates to: TVGNRLFFGEPRSCL*FLGLNSKWVSRGSS
Trigger: ACTGCTGCCCCTGGAAACCCATTTAGAGTTCAGTCCCAAGAATCAGAGGCAACTTCTTGGCTCTCCAAAGAAGAGCCTGTTCCCAACAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR TCA 90 bp GGCTCTTCTTTGGAGAGCCAAGAAGTTGCCTCTGATTCTTGGGACTaGACTCTAAATGGGTTTCCAGGGGCAGCAGTCCTGTCTGTAAAA +
Preference number: 1 (lower is better)
Translates to: GSSLESQEVASDSWD*TLNGFPGAAVLSVK
Trigger: TTTTACAGACAGGACTGCTGCCCCTGGAAACCCATTTAGAGTTCAGTCCCAAGAATCAGAGGCAACTTCTTGGCTCTCCAAAGAAGAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR CCA 90 bp GTCACTGCTCAGGGCTGCGATCCACACTGCTTCAGTTTTCTAAAGTaGATTAGCTTGCTAATGGGGAGTGGATACCATACACACTACTCA +
Preference number: 1 (lower is better)
Translates to: VTAQGCDPHCFSFLK*ISLLMGSGYHTHYS
Trigger: TGAGTAGTGTGTATGGTATCCACTCCCCATTAGCAAGCTAATCCACTTTAGAAAACTGAAGCAGTGTGGATCGCAGCCCTGAGCAGTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR CCA 90 bp TCCAGAGGACACGGTCTGTCCAAGCAGGGGTGCGACACTTCTCACTaGTGTCATAGTCTTCAGAAAACAAGTCATATTTATAGGTTGGAG +
Preference number: 1 (lower is better)
Translates to: SRGHGLSKQGCDTSH*CHSLQKTSHIYRLE
Trigger: CTCCAACCTATAAATATGACTTGTTTTCTGAAGACTATGACACCAGTGAGAAGTGTCGCACCCCTGCTTGGACAGACCGTGTCCTCTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231472.2
3UTR CCA 90 bp TCCTCAACAGCACAATGGGCTGCAGTCCTGTCAGCTGCAGTTGTGTaGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATT +
Preference number: 1 (lower is better)
Translates to: SSTAQWAAVLSAAVV*ALRDFYVTMRIRTI
Trigger: AATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAACTGCAGCTGACAGGACTGCAGCCCATTGTGCTGTTGAGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR TCA 90 bp TCAGTTGCATACTGGCAGTGCAGGAGACAAAATCCACAGCTAATTTaGGGTATAGCCTCTAAAGCCTTAAAGCAGCATCATGGATGTGCT +
Preference number: 1 (lower is better)
Translates to: SVAYWQCRRQNPQLI*GIASKALKQHHGCA
Trigger: AGCACATCCATGATGCTGCTTTAAGGCTTTAGAGGCTATACCTCAAATTAGCTGTGGATTTTGTCTCCTGCACTGCCAGTATGCAACTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR GCA 90 bp TATGGTCAGAAGTCTTCAGCTCGGCTCTTCCATAGTGCAGCAAGGTaGCAGGGGTCCATGTATAAAGAATTTTACTTTCATCTTGGAAAC +
Preference number: 1 (lower is better)
Translates to: YGQKSSARLFHSAAR*QGSMYKEFYFHLGN
Trigger: GTTTCCAAGATGAAAGTAAAATTCTTTATACATGGACCCCTGGCACCTTGCTGCACTATGGAAGAGCCGAGCTGAAGACTTCTGACCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231472.2
3UTR TCA 90 bp AGAGAACAGAGACTCACAGAGATTCTTAGTGTCTGTTTTCTGCTTTaGCCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCA +
Preference number: 1 (lower is better)
Translates to: REQRLTEILSVCFLL*PDLANTHDVEFFVA
Trigger: TGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGCAGAAAACAGACACTAAGAATCTCTGTGAGTCTCTGTTCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR GCA 90 bp ACTAGAGAGAACAGAGACTCACAGAGATTCTTAGTGTCTGTTTTCTaGTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTG +
Preference number: 1 (lower is better)
Translates to: TRENRDSQRFLVSVF*FDQTWQIHTMSSSL
Trigger: CAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGCAGAAAACAGACACTAAGAATCTCTGTGAGTCTCTGTTCTCTCTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR TCA 90 bp AACAAGCACGATCTAAAACTCACAAGAGTTATTGCTAACAGCGAGTaGTGGCTGCAGCAGAGTTACTTCTATAAACACAGGATTGTGATA +
Preference number: 1 (lower is better)
Translates to: NKHDLKLTRVIANSE*WLQQSYFYKHRIVI
Trigger: TATCACAATCCTGTGTTTATAGAAGTAACTCTGCTGCAGCCATCACTCGCTGTTAGCAATAACTCTTGTGAGTTTTAGATCGTGCTTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR TCA 90 bp GAAAAAGTAGAACTCCAGTTAATAAGAGGATGTCTTTGTTATTTCTaGTATACACAAATTCCAGCTTTCTCCACATCCTCCAGTGGTATT +
Preference number: 1 (lower is better)
Translates to: EKVELQLIRGCLCYF*YTQIPAFSTSSSGI
Trigger: AATACCACTGGAGGATGTGGAGAAAGCTGGAATTTGTGTATATCAGAAATAACAAAGACATCCTCTTATTAACTGGAGTTCTACTTTTTC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGTCCGGCAGGGCAGGCTaGGAAACGGGTTTGCAGAAC +
Preference number: 2 (lower is better)
Translates to: LCRHYSGSHLRESLLRAASGRAG*ETGLQN
Trigger: GTTCTGCAAACCCGTTTCCCAGCCTGCCCTGCCGGA...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGACAGTGGTTCACACCTaGGGGAGTCACTGCTCAGGG +
Preference number: 2 (lower is better)
Translates to: LCRHYSGSHLRESLLRAATVVHT*GSHCSG
Trigger: CCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGT...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTGCTCTAGGAGAGAAGTaGGATGCAGCCTGCTGTGCT +
Preference number: 2 (lower is better)
Translates to: YSGSHLRESLLRAAIHTAALGEK*DAACCA
Trigger: AGCACAGCAGGCTGCATCGCACTTCTCTCCTAGAGC...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTCTGCAGATGAGGTTGTaGCAGGTGGTAGCAGAGGGA +
Preference number: 2 (lower is better)
Translates to: YSGSHLRESLLRAAIHTALQMRL*QVVAEG
Trigger: TCCCTCTGCTACCACCTGGCACAACCTCATCTGCAG...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCTCCGGCAGGGCAGGCTaGGAAACGGGTTTGCAGAAC +
Preference number: 2 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGSGRAG*ETGLQN
Trigger: GTTCTGCAAACCCGTTTCCCAGCCTGCCCTGCCGGA...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTTGCAGTCCTGTCAGCTaGAGTTGTGTGGGCTTTACG +
Preference number: 2 (lower is better)
Translates to: YSGSHLRESLLRAAIHTACSPVS*SCVGFT
Trigger: CGTAAAGCCCACACAACTGCAGCTGACAGGACTGCA...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGGCTGGGAAACGGGTTTaGAGAACTGCCCATACTCTC +
Preference number: 2 (lower is better)
Translates to: LCRHYSGSHLRESLLRAAAGKRV*RTAHTL
Trigger: GAGAGTATGGGCAGTTCTGCAAACCCGTTTCCCAGC...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCAGGGACAGGAGGTGGTaGTGGTGGTGGCCTTCTGGC +
Preference number: 2 (lower is better)
Translates to: DFLTRQSYCSADITVVHTRDRRW*WWWPSG
Trigger: GCCAGAAGGCCACCACCACCACCACCTCCTGTCCCT...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTGTCCAATGTGGAAGGTaGCTTAGATGGCAGGGTTGT +
Preference number: 2 (lower is better)
Translates to: YSGSHLRESLLRAAIHTAVQCGR*LRWQGC
Trigger: ACAACCCTGCCATCTAAGGCACCTTCCACATTGGAC...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGCTGCAGACATTACAGTaGTTCACACCTGAGGGAGTC +
Preference number: 2 (lower is better)
Translates to: LCRHYSGSHLRESLLRAALQTLQ*FTPEGV
Trigger: GACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAG...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTCTGCAGACATTACAGTaGTTCACACCTGAGGGAGTC +
Preference number: 2 (lower is better)
Translates to: YSGSHLRESLLRAAIHTALQTLQ*FTPEGV
Trigger: GACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAG...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTACCTGGAGGCCTGGTTaGCATGCAACTTACAGAACT +
Preference number: 2 (lower is better)
Translates to: YSGSHLRESLLRAAIHTATWRPG*HATYRT
Trigger: AGTTCTGTAAGTTGCATGCCAACCAGGCCTCCAGGT...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGGGACTGAACTCTAAATaGGTTTCCAGGGGCAGCAGT +
Preference number: 2 (lower is better)
Translates to: LCRHYSGSHLRESLLRAAGLNSK*VSRGSS
Trigger: ACTGCTGCCCCTGGAAACCCATTTAGAGTTCAGTCC...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTAGGTGGTGGTGGTGGTaGCCTTCTGGCTGGCAACAC +
Preference number: 2 (lower is better)
Translates to: AATRLPDKAELLLCRHYSRWWWW*PSGWQH
Trigger: GTGTTGCCAGCCAGAAGGCCACCACCACCACCACCT...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCAAGGGACAGGAGGTGGTaGTGGTGGTGGCCTTCTGGC +
Preference number: 2 (lower is better)
Translates to: FAKVLCPNRSALGEKCDARDRRW*WWWPSG
Trigger: GCCAGAAGGCCACCACCACCACCACCTCCTGTCCCT...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGCCAAGAAGTTGCCTCTaGTTCTTGGGACTGAACTCT +
Preference number: 2 (lower is better)
Translates to: LCRHYSGSHLRESLLRAAPRSCL*FLGLNS
Trigger: AGAGTTCAGTCCCAAGAATCAGAGGCAACTTCTTGG...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCTGCAGTCCTGTCAGCTaGAGTTGTGTGGGCTTTACG +
Preference number: 2 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGCSPVS*SCVGFT
Trigger: CGTAAAGCCCACACAACTGCAGCTGACAGGACTGCA...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCACAGAGGGACAGGAGGTaGTGGTGGTGGTGGCCTTCT +
Preference number: 2 (lower is better)
Translates to: FAKVLCPNRSALGEKCDAQRDRR*WWWWPS
Trigger: AGAAGGCCACCACCACCACCACCTCCTGTCCCTCTG...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGCTCTTGGATCCACCCTaGCAAAACAGAAACAAACAG +
Preference number: 2 (lower is better)
Translates to: LCRHYSGSHLRESLLRAALLDPP*QNRNKQ
Trigger: CTGTTTGTTTCTGTTTTGTCAGGGTGGATCCAAGAG...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTAGCAAGCACACTAAGTaGGAGATCTTCAAATGGGTC +
Preference number: 2 (lower is better)
Translates to: YSGSHLRESLLRAAIHTASKHTK*EIFKWV
Trigger: GACCCATTTGAAGATCTCTCACTTAGTGTGCTTGCT...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTAAACGTAAGATCAGTTaGATACTGGCAGTGCAGGAG +
Preference number: 2 (lower is better)
Translates to: YSGSHLRESLLRAAIHTAKRKIS*ILAVQE
Trigger: CTCCTGCACTGCCAGTATGCAACTGATCTTACGTTT...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTAATGCCCCATTCTCTTaGATCCACCCTGACAAAACA +
Preference number: 2 (lower is better)
Translates to: YSGSHLRESLLRAAIHTANAPFS*IHPDKT
Trigger: TGTTTTGTCAGGGTGGATCCAAGAGAATGGGGCATT...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTCTTGCTAATGGGGAGTaGATACCATACACACTACTC +
Preference number: 2 (lower is better)
Translates to: YSGSHLRESLLRAAIHTALANGE*IPYTLL
Trigger: GAGTAGTGTGTATGGTATCCACTCCCCATTAGCAAG...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTGACAGGAGGTGGTGGTaGTGGTGGCCTTCTGGCTGG +
Preference number: 2 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLDRRWW*WWPSGW
Trigger: CCAGCCAGAAGGCCACCACCACCACCACCTCCTGTC...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTAGACCACTCAACAGCTaGAAGCAGAGCTCCAGGCAA +
Preference number: 2 (lower is better)
Translates to: AATRLPDKAELLLCRHYSRPLNS*KQSSRQ
Trigger: TTGCCTGGAGCTCTGCTTTCAGCTGTTGAGTGGTCT...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTTTAACTTCAGCTGACTaGCAACCAACTGACCAAACA +
Preference number: 2 (lower is better)
Translates to: YSGSHLRESLLRAAIHTALTSAD*QPTDQT
Trigger: TGTTTGGTCAGTTGGTTGTCAGTCAGCTGAAGTTAA...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCAGAAGGCTGAGCCTTTaGTACAGCAAGCACACTAAG +
Preference number: 2 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGRRLSL*YSKHTK
Trigger: CTTAGTGTGCTTGCTGTATCAAAGGCTCAGCCTTCT...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTTCTGATTCTTGGGACTaGACTCTAAATGGGTTTCCA +
Preference number: 2 (lower is better)
Translates to: YSGSHLRESLLRAAIHTASDSWD*TLNGFP
Trigger: TGGAAACCCATTTAGAGTTCAGTCCCAAGAATCAGA...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTCTTAAAGCAGCATCATaGATGTGCTATGTAGCCTCT +
Preference number: 2 (lower is better)
Translates to: YSGSHLRESLLRAAIHTALKAAS*MCYVAS
Trigger: AGAGGCTACATAGCACATCCATGATGCTGCTTTAAG...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTGTCACTCTTCAATGTTaGCTCTTGTTTGACACCAGA +
Preference number: 2 (lower is better)
Translates to: YSGSHLRESLLRAAIHTAVTLQC*LLFDTR
Trigger: TCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGAC...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCACTGGACCTGGAGGCCTaGTTGGCATGCAACTTACAG +
Preference number: 2 (lower is better)
Translates to: FAKVLCPNRSALGEKCDALDLEA*LACNLQ
Trigger: CTGTAAGTTGCATGCCAACCAGGCCTCCAGGTCCAG...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TCATGGATGTGCTATGTAGCCTCTTACATGGGAGAACATACACTGGACATGTTCTCCGGCAGGGCAGGCTaGGAAACGGGTTTGCAGAAC +
Preference number: 2 (lower is better)
Translates to: SWMCYVASYMGEHTLDMFSGRAG*ETGLQN
Trigger: GTTCTGCAAACCCGTTTCCCAGCCTGCCCTGCCGGA...GAACATGTCCAGTGTATGTTCTCCCATGTAAGAGGCTACATAGCACATCCATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGAGGTTACCCATCCTTTaGGGTTGCTTGTTTTTACTG +
Preference number: 2 (lower is better)
Translates to: LCRHYSGSHLRESLLRAARLPIL*GCLFLL
Trigger: CAGTAAAAACAAGCAACCCCAAAGGATGGGTAACCT...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCAGTGGTGGTGGCCTTCTaGCTGGCAACACACAGAAAG +
Preference number: 2 (lower is better)
Translates to: FAKVLCPNRSALGEKCDAVVVAF*LATHRK
Trigger: CTTTCTGTGTGTTGCCAGCCAGAAGGCCACCACCAC...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCATTTATTGCACATaGCTGACTAATGCCCCATTC +
Preference number: 2 (lower is better)
Translates to: LCRHYSGSHLRESLLRAAIIYCT*LTNAPF
Trigger: GAATGGGGCATTAGTCAGTCATGTGCAATAAATGAT...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCAGCAAGCACACTAAGTaGGAGATCTTCAAATGGGTC +
Preference number: 2 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGSKHTK*EIFKWV
Trigger: GACCCATTTGAAGATCTCTCACTTAGTGTGCTTGCT...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCGATGCAGAAGGCAACTaGATCAACATCTTTGGGTCT +
Preference number: 2 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGDAEGN*INIFGS
Trigger: AGACCCAAAGATGTTGATTCAGTTGCCTTCTGCATC...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp ACGGCCAACTGTAAATGCCCAGAGAAAGGCATCATAGAGGTACAGAGGAGGAAGTACTCTCCTGTGACTTaGTTTCCTCTGGACCTGGAG +
Preference number: 2 (lower is better)
Translates to: TANCKCPEKGIIEVQRRKYSPVT*FPLDLE
Trigger: CTCCAGGTCCAGAGGAAAGCAAGTCACAGGAGAGTA...CTTCCTCCTCTGTACCTCTATGATGCCTTTCTCTGGGCATTTACAGTTGGCCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTATCTCACCAGAACTCTaGAAGCTCTTTGGTAAGTAT +
Preference number: 2 (lower is better)
Translates to: YSGSHLRESLLRAAIHTAISPEL*KLFGKY
Trigger: ATACTTACCAAAGAGCTTCCAGAGTTCTGGTGAGAT...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTACCTGGAGGCCTGGTTaGCATGCAACTTACAGAACT +
Preference number: 2 (lower is better)
Translates to: AATRLPDKAELLLCRHYSTWRPG*HATYRT
Trigger: AGTTCTGTAAGTTGCATGCCAACCAGGCCTCCAGGT...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCAAGCTACCAGACTTCCTaGCAAGGCAGAGCTATTGCT +
Preference number: 2 (lower is better)
Translates to: FAKVLCPNRSALGEKCDASYQTS*QGRAIA
Trigger: AGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCT...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCCCAAGAAGTTGCCTCTaGTTCTTGGGACTGAACTCT +
Preference number: 2 (lower is better)
Translates to: DFLTRQSYCSADITVVHTPRSCL*FLGLNS
Trigger: AGAGTTCAGTCCCAAGAATCAGAGGCAACTTCTTGG...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGCATTTTGAAGCACACTaGTCTAGTAATACTGCAGTT +
Preference number: 2 (lower is better)
Translates to: LCRHYSGSHLRESLLRAAHFEAH*SSNTAV
Trigger: AACTGCAGTATTACTAGAGCAGTGTGCTTCAAAATG...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGAGAGCTCCAGGCAACTaGCAAACAGAAAGGTATGGA +
Preference number: 2 (lower is better)
Translates to: STAESRAPGNWQTERYGRRAPGN*QTERYG
Trigger: TCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCT...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCACTGCAGACATTACAGTaGTTCACACCTGAGGGAGTC +
Preference number: 2 (lower is better)
Translates to: FAKVLCPNRSALGEKCDALQTLQ*FTPEGV
Trigger: GACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAG...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTCTGGACCTGGAGGCCTaGTTGGCATGCAACTTACAG +
Preference number: 2 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLLDLEA*LACNLQ
Trigger: CTGTAAGTTGCATGCCAACCAGGCCTCCAGGTCCAG...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TCATGGATGTGCTATGTAGCCTCTTACATGGGAGAACATACACTGGACATGTTCGGAAGGTGCCTTAGATaGCAGGGTTGTGCTAGGTCC +
Preference number: 2 (lower is better)
Translates to: SWMCYVASYMGEHTLDMFGRCLR*QGCARS
Trigger: GGACCTAGCACAACCCTGCCATCTAAGGCACCTTCC...GAACATGTCCAGTGTATGTTCTCCCATGTAAGAGGCTACATAGCACATCCATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTGGAAGGTGCCTTAGATaGCAGGGTTGTGCTAGGTCC +
Preference number: 2 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLGRCLR*QGCARS
Trigger: GGACCTAGCACAACCCTGCCATCTAAGGCACCTTCC...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTCTCTTGGATCCACCCTaGCAAAACAGAAACAAACAG +
Preference number: 2 (lower is better)
Translates to: AATRLPDKAELLLCRHYSLLDPP*QNRNKQ
Trigger: CTGTTTGTTTCTGTTTTGTCAGGGTGGATCCAAGAG...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCATCATTTATTGCACATaGCTGACTAATGCCCCATTC +
Preference number: 2 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGIIYCT*LTNAPF
Trigger: GAATGGGGCATTAGTCAGTCATGTGCAATAAATGAT...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp CAGCAATCTACTAGAGAGAACAGAGACTCACAGAGATTCTTAGTGTCTGTTTTCACAGTGGTTCACACCTaGGGGAGTCACTGCTCAGGG +
Preference number: 2 (lower is better)
Translates to: QQSTRENRDSQRFLVSVFTVVHT*GSHCSG
Trigger: CCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGT...GAAAACAGACACTAAGAATCTCTGTGAGTCTCTGTTCTCTCTAGTAGATTGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp GCTTTCCTCTGGACCTGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGAACTTGACTTTGCGATaGAGAAGGCAACTGAATCAA +
Preference number: 2 (lower is better)
Translates to: AFLWTWRPGWHATYRTQRNLTLR*RRQLNQ
Trigger: TTGATTCAGTTGCCTTCTGCATCGCAAAGTCAAGTT...CCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCAGGTCCAGAGGAAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTGCTGGGAAACGGGTTTaGAGAACTGCCCATACTCTC +
Preference number: 2 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLAGKRV*RTAHTL
Trigger: GAGAGTATGGGCAGTTCTGCAAACCCGTTTCCCAGC...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCATCTCACCAGAACTCTaGAAGCTCTTTGGTAAGTAT +
Preference number: 2 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGISPEL*KLFGKY
Trigger: ATACTTACCAAAGAGCTTCCAGAGTTCTGGTGAGAT...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGGAGAATAATAGGAAATaGCAGTTCTCTAAAGGGATT +
Preference number: 2 (lower is better)
Translates to: LCRHYSGSHLRESLLRAAENNRK*QFSKGI
Trigger: AATCCCTTTAGAGAACTGCCATTTCCTATTATTCTC...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTCTTGCTAATGGGGAGTaGATACCATACACACTACTC +
Preference number: 2 (lower is better)
Translates to: AATRLPDKAELLLCRHYSLANGE*IPYTLL
Trigger: GAGTAGTGTGTATGGTATCCACTCCCCATTAGCAAG...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCAGAACAGGCTCTTCTTTaGAGAGCCAAGAAGTTGCCT +
Preference number: 2 (lower is better)
Translates to: FAKVLCPNRSALGEKCDAEQALL*RAKKLP
Trigger: AGGCAACTTCTTGGCTCTCCAAAGAAGAGCCTGTTC...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR CAA 90 bp CCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTaGCGATGCAGAAGGCAACTGAATCAACATCTTTGGGTCTGGGGT +
Preference number: 2 (lower is better)
Translates to: PGWHATYRTQRVNLT*RCRRQLNQHLWVWG
Trigger: ACCCCAGACCCAAAGATGTTGATTCAGTTGCCTTCTGCATCGCAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR CAA 90 bp TGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTaGACTTTGCGATGCAGAAGGCAACTGAATCAACATCTTTGGGTC +
Preference number: 2 (lower is better)
Translates to: WRPGWHATYRTQRVN*TLRCRRQLNQHLWV
Trigger: GACCCAAAGATGTTGATTCAGTTGCCTTCTGCATCGCAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTAATCCACAGCTAATTTaGGGTATAGCCTCTAAAGCC +
Preference number: 2 (lower is better)
Translates to: AATRLPDKAELLLCRHYSNPQLI*GIASKA
Trigger: GGCTTTAGAGGCTATACCTCAAATTAGCTGTGGATT...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTATTGCTAACAGCGAGTaGTGGCTGCAGCAGAGTTAC +
Preference number: 2 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLIANSE*WLQQSY
Trigger: GTAACTCTGCTGCAGCCATCACTCGCTGTTAGCAAT...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp TGCCTTTCACAACAATCTCACCAGAACTCTGGAAGCTCTTTGGTAAGTATCCATTGCAGTCCTGTCAGCTaGAGTTGTGTGGGCTTTACG +
Preference number: 2 (lower is better)
Translates to: CLSQQSHQNSGSSLVSIHCSPVS*SCVGFT
Trigger: CGTAAAGCCCACACAACTGCAGCTGACAGGACTGCA...ATGGATACTTACCAAAGAGCTTCCAGAGTTCTGGTGAGATTGTTGTGAAAGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp CAGCAATCTACTAGAGAGAACAGAGACTCACAGAGATTCTTAGTGTCTGTTTTCCGATGCAGCCTGCTGTaGTTTTACACGGAGGTGAGG +
Preference number: 2 (lower is better)
Translates to: QQSTRENRDSQRFLVSVFRCSLL*FYTEVR
Trigger: CCTCACCTCCGTGTAAAAGCACAGCAGGCTGCATCG...GAAAACAGACACTAAGAATCTCTGTGAGTCTCTGTTCTCTCTAGTAGATTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp TCATGGATGTGCTATGTAGCCTCTTACATGGGAGAACATACACTGGACATGTTCGTCCAATGTGGAAGGTaGCTTAGATGGCAGGGTTGT +
Preference number: 2 (lower is better)
Translates to: SWMCYVASYMGEHTLDMFVQCGR*LRWQGC
Trigger: ACAACCCTGCCATCTAAGGCACCTTCCACATTGGAC...GAACATGTCCAGTGTATGTTCTCCCATGTAAGAGGCTACATAGCACATCCATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCCTTAAAGCAGCATCATaGATGTGCTATGTAGCCTCT +
Preference number: 2 (lower is better)
Translates to: DFLTRQSYCSADITVVHTLKAAS*MCYVAS
Trigger: AGAGGCTACATAGCACATCCATGATGCTGCTTTAAG...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTAGATCAGTTGCATACTaGCAGTGCAGGAGACAAAAT +
Preference number: 2 (lower is better)
Translates to: AATRLPDKAELLLCRHYSRSVAY*QCRRQN
Trigger: ATTTTGTCTCCTGCACTGCCAGTATGCAACTGATCT...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTACCTGGAGGCCTGGTTaGCATGCAACTTACAGAACT +
Preference number: 2 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLTWRPG*HATYRT
Trigger: AGTTCTGTAAGTTGCATGCCAACCAGGCCTCCAGGT...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCAGGTTACCCATCCTTTaGGGTTGCTTGTTTTTACTG +
Preference number: 2 (lower is better)
Translates to: DFLTRQSYCSADITVVHTRLPIL*GCLFLL
Trigger: CAGTAAAAACAAGCAACCCCAAAGGATGGGTAACCT...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGAGGTGGTGGTGGTGGTaGCCTTCTGGCTGGCAACAC +
Preference number: 2 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVRWWWW*PSGWQH
Trigger: GTGTTGCCAGCCAGAAGGCCACCACCACCACCACCT...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTATGTTGGCTCTTGTTTaGCACCAGAAATGCCATTTA +
Preference number: 2 (lower is better)
Translates to: AATRLPDKAELLLCRHYSMLALV*HQKCHL
Trigger: TAAATGGCATTTCTGGTGTCAAACAAGAGCCAACAT...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp TGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGGATGCAGAAGGCAACTaGATCAACATCTTTGGGTCT +
Preference number: 2 (lower is better)
Translates to: WRPGWHATYRTQRVNLTLDAEGN*INIFGS
Trigger: AGACCCAAAGATGTTGATTCAGTTGCCTTCTGCATC...CAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp ACGGCCAACTGTAAATGCCCAGAGAAAGGCATCATAGAGGTACAGAGGAGGAAGTTAATTATCTTTCCGTaGAGTCCAATGTGGAAGGTG +
Preference number: 2 (lower is better)
Translates to: TANCKCPEKGIIEVQRRKLIIFP*SPMWKV
Trigger: CACCTTCCACATTGGACTTCACGGAAAGATAATTAA...CTTCCTCCTCTGTACCTCTATGATGCCTTTCTCTGGGCATTTACAGTTGGCCGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCATCTCACCAGAACTCTaGAAGCTCTTTGGTAAGTAT +
Preference number: 2 (lower is better)
Translates to: DFLTRQSYCSADITVVHTISPEL*KLFGKY
Trigger: ATACTTACCAAAGAGCTTCCAGAGTTCTGGTGAGAT...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TCATGGATGTGCTATGTAGCCTCTTACATGGGAGAACATACACTGGACATGTTCAGAGCTCCAGGCAACTaGCAAACAGAAAGGTATGGA +
Preference number: 2 (lower is better)
Translates to: SWMCYVASYMGEHTLDMFRAPGN*QTERYG
Trigger: TCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCT...GAACATGTCCAGTGTATGTTCTCCCATGTAAGAGGCTACATAGCACATCCATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR CAA 90 bp CCTGTTGTAGGAAAGTTGTCGTCTTCGTCAAAGGTTACCCATCCTTaGGGGTTGCTTGTTTTTACTGTAGACTGGCTCTGCAGATCAAAA +
Preference number: 2 (lower is better)
Translates to: PVVGKLSSSSKVTHP*GLLVFTVDWLCRSK
Trigger: TTTTGATCTGCAGAGCCAGTCTACAGTAAAAACAAGCAACCCCAAAGGATGGGTAACCTTTGACGAAGACGACAACTTTCCTACAACAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp TCATGGATGTGCTATGTAGCCTCTTACATGGGAGAACATACACTGGACATGTTCCTCTTGGATCCACCCTaGCAAAACAGAAACAAACAG +
Preference number: 2 (lower is better)
Translates to: SWMCYVASYMGEHTLDMFLLDPP*QNRNKQ
Trigger: CTGTTTGTTTCTGTTTTGTCAGGGTGGATCCAAGAG...GAACATGTCCAGTGTATGTTCTCCCATGTAAGAGGCTACATAGCACATCCATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTAGCAAGCACACTAAGTaGGAGATCTTCAAATGGGTC +
Preference number: 2 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLSKHTK*EIFKWV
Trigger: GACCCATTTGAAGATCTCTCACTTAGTGTGCTTGCT...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTACAGCGAGTGATGGCTaGAGCAGAGTTACTTCTATA +
Preference number: 2 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLTASDG*SRVTSI
Trigger: TATAGAAGTAACTCTGCTGCAGCCATCACTCGCTGT...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTAATGCCCCATTCTCTTaGATCCACCCTGACAAAACA +
Preference number: 2 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLNAPFS*IHPDKT
Trigger: TGTTTTGTCAGGGTGGATCCAAGAGAATGGGGCATT...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCATCAGCTGCAGTTGTGTaGGCTTTACGTGATTTTTAT +
Preference number: 2 (lower is better)
Translates to: FAKVLCPNRSALGEKCDASAAVV*ALRDFY
Trigger: ATAAAAATCACGTAAAGCCCACACAACTGCAGCTGA...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTCTTGCTAATGGGGAGTaGATACCATACACACTACTC +
Preference number: 2 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLLANGE*IPYTLL
Trigger: GAGTAGTGTGTATGGTATCCACTCCCCATTAGCAAG...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp AGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGCGAGTCACTCTTCAATGTTaGCTCTTGTTTGACACCAGA +
Preference number: 2 (lower is better)
Translates to: RPGWHATYRTQRVNLTLRVTLQC*LLFDTR
Trigger: TCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGAC...TCGCAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp GTCAAAGGTTACCCATCCTTTGGGGTTGCTTGTTTTTACTGTAGACTGGCTCTGGTCACTCTTCAATGTTaGCTCTTGTTTGACACCAGA +
Preference number: 2 (lower is better)
Translates to: VKGYPSFGVACFYCRLALVTLQC*LLFDTR
Trigger: TCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGAC...CAGAGCCAGTCTACAGTAAAAACAAGCAACCCCAAAGGATGGGTAACCTTTGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGGTGGTGGTGGCCTTCTaGCTGGCAACACACAGAAAG +
Preference number: 2 (lower is better)
Translates to: DSTSHKICTECIPATLILVVVAF*LATHRK
Trigger: CTTTCTGTGTGTTGCCAGCCAGAAGGCCACCACCAC...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCGGAAGGTGCCTTAGATaGCAGGGTTGTGCTAGGTCC +
Preference number: 2 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFGRCLR*QGCARS
Trigger: GGACCTAGCACAACCCTGCCATCTAAGGCACCTTCC...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR CAA 90 bp ACTAAGTCTGGACAAACTGACTTTGACTTTCCTGTTGTAGGAAAGTaGTCGTCTTCGTCAAAGGTTACCCATCCTTTGGGGTTGCTTGTT +
Preference number: 2 (lower is better)
Translates to: TKSGQTDFDFPVVGK*SSSSKVTHPLGLLV
Trigger: AACAAGCAACCCCAAAGGATGGGTAACCTTTGACGAAGACGACAACTTTCCTACAACAGGAAAGTCAAAGTCAGTTTGTCCAGACTTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp GTCAAAGGTTACCCATCCTTTGGGGTTGCTTGTTTTTACTGTAGACTGGCTCTGATCATTTATTGCACATaGCTGACTAATGCCCCATTC +
Preference number: 2 (lower is better)
Translates to: VKGYPSFGVACFYCRLALIIYCT*LTNAPF
Trigger: GAATGGGGCATTAGTCAGTCATGTGCAATAAATGAT...CAGAGCCAGTCTACAGTAAAAACAAGCAACCCCAAAGGATGGGTAACCTTTGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCAGACCACTCAACAGCTaGAAGCAGAGCTCCAGGCAA +
Preference number: 2 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFRPLNS*KQSSRQ
Trigger: TTGCCTGGAGCTCTGCTTTCAGCTGTTGAGTGGTCT...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp TGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGATGTTGGCTCTTGTTTaGCACCAGAAATGCCATTTA +
Preference number: 2 (lower is better)
Translates to: WRPGWHATYRTQRVNLTLMLALV*HQKCHL
Trigger: TAAATGGCATTTCTGGTGTCAAACAAGAGCCAACAT...CAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp AGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGCGAATGTTGGCTCTTGTTTaGCACCAGAAATGCCATTTA +
Preference number: 2 (lower is better)
Translates to: RPGWHATYRTQRVNLTLRMLALV*HQKCHL
Trigger: TAAATGGCATTTCTGGTGTCAAACAAGAGCCAACAT...TCGCAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp TGCCTTTCACAACAATCTCACCAGAACTCTGGAAGCTCTTTGGTAAGTATCCATGATGCAGAAGGCAACTaGATCAACATCTTTGGGTCT +
Preference number: 2 (lower is better)
Translates to: CLSQQSHQNSGSSLVSIHDAEGN*INIFGS
Trigger: AGACCCAAAGATGTTGATTCAGTTGCCTTCTGCATC...ATGGATACTTACCAAAGAGCTTCCAGAGTTCTGGTGAGATTGTTGTGAAAGGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCTGCAGTCCTGTCAGCTaGAGTTGTGTGGGCTTTACG +
Preference number: 2 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFCSPVS*SCVGFT
Trigger: CGTAAAGCCCACACAACTGCAGCTGACAGGACTGCA...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp GTCAAAGGTTACCCATCCTTTGGGGTTGCTTGTTTTTACTGTAGACTGGCTCTGAACTTGACTTTGCGATaGAGAAGGCAACTGAATCAA +
Preference number: 2 (lower is better)
Translates to: VKGYPSFGVACFYCRLALNLTLR*RRQLNQ
Trigger: TTGATTCAGTTGCCTTCTGCATCGCAAAGTCAAGTT...CAGAGCCAGTCTACAGTAAAAACAAGCAACCCCAAAGGATGGGTAACCTTTGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp CTGCTCTATTCTATTCATCTGAAGAGAAAAAGTAGAACTCCAGTTAATAAGAGGCTGCAGATGAGGTTGTaGCAGGTGGTAGCAGAGGGA +
Preference number: 2 (lower is better)
Translates to: LLYSIHLKRKSRTPVNKRLQMRL*QVVAEG
Trigger: TCCCTCTGCTACCACCTGGCACAACCTCATCTGCAG...CCTCTTATTAACTGGAGTTCTACTTTTTCTCTTCAGATGAATAGAATAGAGCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TGCCTTTCACAACAATCTCACCAGAACTCTGGAAGCTCTTTGGTAAGTATCCATAATGCCCCATTCTCTTaGATCCACCCTGACAAAACA +
Preference number: 2 (lower is better)
Translates to: CLSQQSHQNSGSSLVSIHNAPFS*IHPDKT
Trigger: TGTTTTGTCAGGGTGGATCCAAGAGAATGGGGCATT...ATGGATACTTACCAAAGAGCTTCCAGAGTTCTGGTGAGATTGTTGTGAAAGGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCATGGTGGCCTTCTGGCTaGCAACACACAGAAAGAAAC +
Preference number: 2 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPWWPSG*QHTERN
Trigger: GTTTCTTTCTGTGTGTTGCCAGCCAGAAGGCCACCA...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTCTACTACTGTTGAAATaGTTAGAACCCCAACAAGCA +
Preference number: 2 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLLLLLK*LEPQQA
Trigger: TGCTTGTTGGGGTTCTAATCATTTCAACAGTAGTAG...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCAGAACAGGCTCTTCTTTaGAGAGCCAAGAAGTTGCCT +
Preference number: 2 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPEQALL*RAKKLP
Trigger: AGGCAACTTCTTGGCTCTCCAAAGAAGAGCCTGTTC...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCACTCTTGGATCCACCCTaGCAAAACAGAAACAAACAG +
Preference number: 2 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPLLDPP*QNRNKQ
Trigger: CTGTTTGTTTCTGTTTTGTCAGGGTGGATCCAAGAG...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp CAGCAATCTACTAGAGAGAACAGAGACTCACAGAGATTCTTAGTGTCTGTTTTCTTAACTTCAGCTGACTaGCAACCAACTGACCAAACA +
Preference number: 2 (lower is better)
Translates to: QQSTRENRDSQRFLVSVFLTSAD*QPTDQT
Trigger: TGTTTGGTCAGTTGGTTGTCAGTCAGCTGAAGTTAA...GAAAACAGACACTAAGAATCTCTGTGAGTCTCTGTTCTCTCTAGTAGATTGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGCCAAGAAGTTGCCTCTaGTTCTTGGGACTGAACTCT +
Preference number: 2 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVPRSCL*FLGLNS
Trigger: AGAGTTCAGTCCCAAGAATCAGAGGCAACTTCTTGG...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp CTGCTCTATTCTATTCATCTGAAGAGAAAAAGTAGAACTCCAGTTAATAAGAGGGTCCAATGTGGAAGGTaGCTTAGATGGCAGGGTTGT +
Preference number: 2 (lower is better)
Translates to: LLYSIHLKRKSRTPVNKRVQCGR*LRWQGC
Trigger: ACAACCCTGCCATCTAAGGCACCTTCCACATTGGAC...CCTCTTATTAACTGGAGTTCTACTTTTTCTCTTCAGATGAATAGAATAGAGCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCAAATGCCCCATTCTCTTaGATCCACCCTGACAAAACA +
Preference number: 2 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPNAPFS*IHPDKT
Trigger: TGTTTTGTCAGGGTGGATCCAAGAGAATGGGGCATT...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCAGAGCTCCAGGCAACTaGCAAACAGAAAGGTATGGA +
Preference number: 2 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFRAPGN*QTERYG
Trigger: TCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCT...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp TCTTGGAAACTAGCATTCAGGAGATCTAAATCTTCAGCTGATCTGTCAAAAGGCTGCGACACTTCTCACTaGTGTCATAGTCTTCAGAAA +
Preference number: 2 (lower is better)
Translates to: SWKLAFRRSKSSADLSKGCDTSH*CHSLQK
Trigger: TTTCTGAAGACTATGACACCAGTGAGAAGTGTCGCA...GCCTTTTGACAGATCAGCTGAAGATTTAGATCTCCTGAATGCTAGTTTCCAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231472.2
3UTR-3UTR TCA 90 bp CAGCAATCTACTAGAGAGAACAGAGACTCACAGAGATTCTTAGTGTCTGTTTTCTTTATTGCACATGACTaGCTAATGCCCCATTCTCTT +
Preference number: 2 (lower is better)
Translates to: QQSTRENRDSQRFLVSVFFIAHD*LMPHSL
Trigger: AAGAGAATGGGGCATTAGTCAGTCATGTGCAATAAA...GAAAACAGACACTAAGAATCTCTGTGAGTCTCTGTTCTCTCTAGTAGATTGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGGTCTGTTTTCTGCTTTaGCCAGACCTGGCAAATACA +
Preference number: 2 (lower is better)
Translates to: DSTSHKICTECIPATLILVCFLL*PDLANT
Trigger: TGTATTTGCCAGGTCTGGTCAAAGCAGAAAACAGAC...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCGATGCAGAAGGCAACTaGATCAACATCTTTGGGTCT +
Preference number: 2 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFDAEGN*INIFGS
Trigger: AGACCCAAAGATGTTGATTCAGTTGCCTTCTGCATC...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCACGGCCAACTGTAAATaGCCAGAGAAAGGCATCATA +
Preference number: 2 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFTANCK*PEKGII
Trigger: TATGATGCCTTTCTCTGGGCATTTACAGTTGGCCGT...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCGCAGCATCATGGATGTaGTATGTAGCCTCTTACATG +
Preference number: 2 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFAASWM*YVASYM
Trigger: CATGTAAGAGGCTACATAGCACATCCATGATGCTGC...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTGAGAATAATAGGAAATaGCAGTTCTCTAAAGGGATT +
Preference number: 2 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLENNRK*QFSKGI
Trigger: AATCCCTTTAGAGAACTGCCATTTCCTATTATTCTC...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGAATCCACAGCTAATTTaGGGTATAGCCTCTAAAGCC +
Preference number: 2 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVNPQLI*GIASKA
Trigger: GGCTTTAGAGGCTATACCTCAAATTAGCTGTGGATT...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CCA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGAGGTTACCCATCCTTTaGGGTTGCTTGTTTTTACTG +
Preference number: 2 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVRLPIL*GCLFLL
Trigger: CAGTAAAAACAAGCAACCCCAAAGGATGGGTAACCT...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGCTACTACTGTTGAAATaGTTAGAACCCCAACAAGCA +
Preference number: 2 (lower is better)
Translates to: DSTSHKICTECIPATLILLLLLK*LEPQQA
Trigger: TGCTTGTTGGGGTTCTAATCATTTCAACAGTAGTAG...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGATGTTGGCTCTTGTTTaGCACCAGAAATGCCATTTA +
Preference number: 2 (lower is better)
Translates to: DSTSHKICTECIPATLILMLALV*HQKCHL
Trigger: TAAATGGCATTTCTGGTGTCAAACAAGAGCCAACAT...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR TCA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGTTAATTATCTTTCCGTaGAGTCCAATGTGGAAGGTG +
Preference number: 2 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVLIIFP*SPMWKV
Trigger: CACCTTCCACATTGGACTTCACGGAAAGATAATTAA...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR GCA 90 bp CTGCTCTATTCTATTCATCTGAAGAGAAAAAGTAGAACTCCAGTTAATAAGAGGACTGTAGACTGGCTCTaGAGATCAAAATTGTCCTCA +
Preference number: 2 (lower is better)
Translates to: LLYSIHLKRKSRTPVNKRTVDWL*RSKLSS
Trigger: TGAGGACAATTTTGATCTGCAGAGCCAGTCTACAGT...CCTCTTATTAACTGGAGTTCTACTTTTTCTCTTCAGATGAATAGAATAGAGCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR CAA 90 bp TCACACAGATGTTACAGCCACAATCTCAACAAGTTAATTCACATTTaGAAGCACACTGCTCTAGTAATACTGCAGTTTAAAAGCTACTAC +
Preference number: 2 (lower is better)
Translates to: SHRCYSHNLNKLIHI*KHTALVILQFKSYY
Trigger: GTAGTAGCTTTTAAACTGCAGTATTACTAGAGCAGTGTGCTTCAAAATGTGAATTAACTTGTTGAGATTGTGGCTGTAACATCTGTGTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR CCA 72 bp GCAGAGGGACAGGAGGTGGTGGTGGTGGTGGCCTTCTaGCTGGCAACACACAGAAAGAAACGCTCGCACCTT +
Preference number: 3 (lower is better)
Translates to: AEGQEVVVVVAF*LATHRKKRSHL
Trigger: AAGGTGCGAGCGTTTCTTTCTGTGTGTTGCCAGCCAGAAGGCCACCACCACCACCACCTCCTGTCCCTCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR GCA 72 bp TCCGGCAGGGCAGGCTGGGAAACGGGTTTGCAGAACTaGCCATACTCTCCTGTGACTTGCTTTCCTCTGGAC +
Preference number: 3 (lower is better)
Translates to: SGRAGWETGLQN*PYSPVTCFPLD
Trigger: GTCCAGAGGAAAGCAAGTCACAGGAGAGTATGGGCAGTTCTGCAAACCCGTTTCCCAGCCTGCCCTGCCGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR TCA 72 bp GGGAAACGGGTTTGCAGAACTGCCCATACTCTCCTGTaGCTTGCTTTCCTCTGGACCTGGAGGCCTGGTTGG +
Preference number: 3 (lower is better)
Translates to: GKRVCRTAHTLL*LAFLWTWRPGW
Trigger: CCAACCAGGCCTCCAGGTCCAGAGGAAAGCAAGTCACAGGAGAGTATGGGCAGTTCTGCAAACCCGTTTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR GCA 72 bp ACGGGTTTGCAGAACTGCCCATACTCTCCTGTGACTTaGTTTCCTCTGGACCTGGAGGCCTGGTTGGCATGC +
Preference number: 3 (lower is better)
Translates to: TGLQNCPYSPVT*FPLDLEAWLAC
Trigger: GCATGCCAACCAGGCCTCCAGGTCCAGAGGAAAGCAAGTCACAGGAGAGTATGGGCAGTTCTGCAAACCCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR TCA 72 bp ACGCAGAGAAAAGAGCACACGGACAATGTTCCTCCGTaGAGCTGGTGGTGTGCGCCCACTCTTCTATCTGTC +
Preference number: 3 (lower is better)
Translates to: TQRKEHTDNVPP*SWWCAPTLLSV
Trigger: GACAGATAGAAGAGTGGGCGCACACCACCAGCTTCACGGAGGAACATTGTCCGTGTGCTCTTTTCTCTGCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR TCA 72 bp AGCTATTGCTCTGCAGACATTACAGTGGTTCACACCTaGGGGAGTCACTGCTCAGGGCTGCGATCCACACTG +
Preference number: 3 (lower is better)
Translates to: SYCSADITVVHT*GSHCSGLRSTL
Trigger: CAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR CCA 72 bp GACCACTCAACAGCTGAAAGCAGAGCTCCAGGCAACTaGCAAACAGAAAGGTATGGAAGGGCAAAGGGCCAC +
Preference number: 3 (lower is better)
Translates to: DHSTAESRAPGN*QTERYGRAKGH
Trigger: GTGGCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGAGTGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTGACAAGGCAGAGCTATaGCTCTGCAGACATTACAGT +
Preference number: 3 (lower is better)
Translates to: YSGSHLRESLLRAAIHTADKAEL*LCRHYS
Trigger: ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTC...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTCTTCAATGTTGGCTCTaGTTTGACACCAGAAATGCC +
Preference number: 3 (lower is better)
Translates to: YSGSHLRESLLRAAIHTALQCWL*FDTRNA
Trigger: GGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAG...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGACCTGGAGGCCTGGTaGGCATGCAACTTACAGAAC +
Preference number: 3 (lower is better)
Translates to: AATRLPDKAELLLCRHYSDLEAW*ACNLQN
Trigger: GTTCTGTAAGTTGCATGCCAACCAGGCCTCCAGGTC...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTAAGGTTACCCATCCTTaGGGGTTGCTTGTTTTTACT +
Preference number: 3 (lower is better)
Translates to: YSGSHLRESLLRAAIHTAKVTHP*GLLVFT
Trigger: AGTAAAAACAAGCAACCCCAAAGGATGGGTAACCTT...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR TCA 72 bp TTGGAGAGCCAAGAAGTTGCCTCTGATTCTTGGGACTaGACTCTAAATGGGTTTCCAGGGGCAGCAGTCCTG +
Preference number: 3 (lower is better)
Translates to: LESQEVASDSWD*TLNGFPGAAVL
Trigger: CAGGACTGCTGCCCCTGGAAACCCATTTAGAGTTCAGTCCCAAGAATCAGAGGCAACTTCTTGGCTCTCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR GCA 72 bp GCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTaGAGACATTACAGTGGTTCACACCTGAGGGAGTCA +
Preference number: 3 (lower is better)
Translates to: ATRLPDKAELLL*RHYSGSHLRES
Trigger: TGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGATACTCTCCTGTGACTaGCTTTCCTCTGGACCTGGA +
Preference number: 3 (lower is better)
Translates to: STAESRAPGNWQTERYGRILSCD*LSSGPG
Trigger: TCCAGGTCCAGAGGAAAGCAAGTCACAGGAGAGTAT...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCATCCTGTCAGCTGCAGTaGTGTGGGCTTTACGTGATT +
Preference number: 3 (lower is better)
Translates to: FAKVLCPNRSALGEKCDASCQLQ*CGLYVI
Trigger: AATCACGTAAAGCCCACACAACTGCAGCTGACAGGA...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTAGGGTTAACTTGACTTaGCGATGCAGAAGGCAACTG +
Preference number: 3 (lower is better)
Translates to: AATRLPDKAELLLCRHYSRVNLT*RCRRQL
Trigger: CAGTTGCCTTCTGCATCGCAAAGTCAAGTTAACCCT...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR TCA 72 bp ACTTGCTTTGTGCGTTTCAGCAGCTACCAGACTTCCTaGCAAGGCAGAGCTATTGCTCTGCAGACATTACAG +
Preference number: 3 (lower is better)
Translates to: TCFVRFSSYQTS*QGRAIALQTLQ
Trigger: CTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGCTGAAACGCACAAAGCAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGCTTCAATGTTGGCTCTaGTTTGACACCAGAAATGCC +
Preference number: 3 (lower is better)
Translates to: STAESRAPGNWQTERYGRLQCWL*FDTRNA
Trigger: GGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAG...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTACCCATCCTTTGGGGTaGCTTGTTTTTACTGTAGAC +
Preference number: 3 (lower is better)
Translates to: AATRLPDKAELLLCRHYSTHPLG*LVFTVD
Trigger: GTCTACAGTAAAAACAAGCAACCCCAAAGGATGGGT...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp ACGGCCAACTGTAAATGCCCAGAGAAAGGCATCATAGAGGTACAGAGGAGGAAGAACTCTGGAAGCTCTTaGGTAAGTATCCATGACTAC +
Preference number: 3 (lower is better)
Translates to: TANCKCPEKGIIEVQRRKNSGSS*VSIHDY
Trigger: GTAGTCATGGATACTTACCAAAGAGCTTCCAGAGTT...CTTCCTCCTCTGTACCTCTATGATGCCTTTCTCTGGGCATTTACAGTTGGCCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp CAGCAATCTACTAGAGAGAACAGAGACTCACAGAGATTCTTAGTGTCTGTTTTCGACCTGGAGGCCTGGTaGGCATGCAACTTACAGAAC +
Preference number: 3 (lower is better)
Translates to: QQSTRENRDSQRFLVSVFDLEAW*ACNLQN
Trigger: GTTCTGTAAGTTGCATGCCAACCAGGCCTCCAGGTC...GAAAACAGACACTAAGAATCTCTGTGAGTCTCTGTTCTCTCTAGTAGATTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTTGGAGAGCCAAGAAGTaGCCTCTGATTCTTGGGACT +
Preference number: 3 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLWRAKK*PLILGT
Trigger: AGTCCCAAGAATCAGAGGCAACTTCTTGGCTCTCCA...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR TCA 72 bp TCACCAGAACTCTGGAAGCTCTTTGGTAAGTATCCATaGCTACCAATCCTCAACAGCACAATGGGCTGCAGT +
Preference number: 3 (lower is better)
Translates to: SPELWKLFGKYP*LPILNSTMGCS
Trigger: ACTGCAGCCCATTGTGCTGTTGAGGATTGGTAGTCATGGATACTTACCAAAGAGCTTCCAGAGTTCTGGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR TCA 72 bp AACAGGCTCTTCTTTGGAGAGCCAAGAAGTTGCCTCTaGTTCTTGGGACTGAACTCTAAATGGGTTTCCAGG +
Preference number: 3 (lower is better)
Translates to: NRLFFGEPRSCL*FLGLNSKWVSR
Trigger: CCTGGAAACCCATTTAGAGTTCAGTCCCAAGAATCAGAGGCAACTTCTTGGCTCTCCAAAGAAGAGCCTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR CCA 72 bp CAGGGCTGCGATCCACACTGCTTCAGTTTTCTAAAGTaGATTAGCTTGCTAATGGGGAGTGGATACCATACA +
Preference number: 3 (lower is better)
Translates to: QGCDPHCFSFLK*ISLLMGSGYHT
Trigger: TGTATGGTATCCACTCCCCATTAGCAAGCTAATCCACTTTAGAAAACTGAAGCAGTGTGGATCGCAGCCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCAAACTCTGGAAGCTCTTaGGTAAGTATCCATGACTAC +
Preference number: 3 (lower is better)
Translates to: FAKVLCPNRSALGEKCDANSGSS*VSIHDY
Trigger: GTAGTCATGGATACTTACCAAAGAGCTTCCAGAGTT...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp GTCAAAGGTTACCCATCCTTTGGGGTTGCTTGTTTTTACTGTAGACTGGCTCTGCTTCAATGTTGGCTCTaGTTTGACACCAGAAATGCC +
Preference number: 3 (lower is better)
Translates to: VKGYPSFGVACFYCRLALLQCWL*FDTRNA
Trigger: GGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAG...CAGAGCCAGTCTACAGTAAAAACAAGCAACCCCAAAGGATGGGTAACCTTTGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR CCA 72 bp CACGGTCTGTCCAAGCAGGGGTGCGACACTTCTCACTaGTGTCATAGTCTTCAGAAAACAAGTCATATTTAT +
Preference number: 3 (lower is better)
Translates to: HGLSKQGCDTSH*CHSLQKTSHIY
Trigger: ATAAATATGACTTGTTTTCTGAAGACTATGACACCAGTGAGAAGTGTCGCACCCCTGCTTGGACAGACCGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231472.2
3UTR-3UTR CAA 90 bp CAGCAATCTACTAGAGAGAACAGAGACTCACAGAGATTCTTAGTGTCTGTTTTCTCCTGTCAGCTGCAGTaGTGTGGGCTTTACGTGATT +
Preference number: 3 (lower is better)
Translates to: QQSTRENRDSQRFLVSVFSCQLQ*CGLYVI
Trigger: AATCACGTAAAGCCCACACAACTGCAGCTGACAGGA...GAAAACAGACACTAAGAATCTCTGTGAGTCTCTGTTCTCTCTAGTAGATTGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR TCA 72 bp AGACTCACAGAGATTCTTAGTGTCTGTTTTCTGCTTTaGCCAGACCTGGCAAATACACACGATGTCGAGTTC +
Preference number: 3 (lower is better)
Translates to: RLTEILSVCFLL*PDLANTHDVEF
Trigger: GAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGCAGAAAACAGACACTAAGAATCTCTGTGAGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR GCA 72 bp AAGTCTTCAGCTCGGCTCTTCCATAGTGCAGCAAGGTaGCAGGGGTCCATGTATAAAGAATTTTACTTTCAT +
Preference number: 3 (lower is better)
Translates to: KSSARLFHSAAR*QGSMYKEFYFH
Trigger: ATGAAAGTAAAATTCTTTATACATGGACCCCTGGCACCTTGCTGCACTATGGAAGAGCCGAGCTGAAGACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231472.2
3UTR-3UTR CAA 90 bp TCATGGATGTGCTATGTAGCCTCTTACATGGGAGAACATACACTGGACATGTTCAACTCTGGAAGCTCTTaGGTAAGTATCCATGACTAC +
Preference number: 3 (lower is better)
Translates to: SWMCYVASYMGEHTLDMFNSGSS*VSIHDY
Trigger: GTAGTCATGGATACTTACCAAAGAGCTTCCAGAGTT...GAACATGTCCAGTGTATGTTCTCCCATGTAAGAGGCTACATAGCACATCCATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR TCA 72 bp TACTGGCAGTGCAGGAGACAAAATCCACAGCTAATTTaGGGTATAGCCTCTAAAGCCTTAAAGCAGCATCAT +
Preference number: 3 (lower is better)
Translates to: YWQCRRQNPQLI*GIASKALKQHH
Trigger: ATGATGCTGCTTTAAGGCTTTAGAGGCTATACCTCAAATTAGCTGTGGATTTTGTCTCCTGCACTGCCAGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR GCA 72 bp ACTTACAGAACTCAAAGGGTTAACTTGACTTTGCGATaGAGAAGGCAACTGAATCAACATCTTTGGGTCTGG +
Preference number: 3 (lower is better)
Translates to: TYRTQRVNLTLR*RRQLNQHLWVW
Trigger: CCAGACCCAAAGATGTTGATTCAGTTGCCTTCTGCATCGCAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTAATGTTGGCTCTTGTTaGACACCAGAAATGCCATTT +
Preference number: 3 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLNVGSC*TPEMPF
Trigger: AAATGGCATTTCTGGTGTCAAACAAGAGCCAACATT...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGATACTCTCCTGTGACTaGCTTTCCTCTGGACCTGGA +
Preference number: 3 (lower is better)
Translates to: DSTSHKICTECIPATLILILSCD*LSSGPG
Trigger: TCCAGGTCCAGAGGAAAGCAAGTCACAGGAGAGTAT...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGTGGAGAGCCAAGAAGTaGCCTCTGATTCTTGGGACT +
Preference number: 3 (lower is better)
Translates to: DSTSHKICTECIPATLILWRAKK*PLILGT
Trigger: AGTCCCAAGAATCAGAGGCAACTTCTTGGCTCTCCA...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR TCA 72 bp GATCTAAAACTCACAAGAGTTATTGCTAACAGCGAGTaGTGGCTGCAGCAGAGTTACTTCTATAAACACAGG +
Preference number: 3 (lower is better)
Translates to: DLKLTRVIANSE*WLQQSYFYKHR
Trigger: CCTGTGTTTATAGAAGTAACTCTGCTGCAGCCATCACTCGCTGTTAGCAATAACTCTTGTGAGTTTTAGATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGGACAAGGCAGAGCTATaGCTCTGCAGACATTACAGT +
Preference number: 3 (lower is better)
Translates to: DSTSHKICTECIPATLILDKAEL*LCRHYS
Trigger: ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTC...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCAACCCATCCTTTGGGGTaGCTTGTTTTTACTGTAGAC +
Preference number: 3 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPTHPLG*LVFTVD
Trigger: GTCTACAGTAAAAACAAGCAACCCCAAAGGATGGGT...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp CTGCTCTATTCTATTCATCTGAAGAGAAAAAGTAGAACTCCAGTTAATAAGAGGCTCTGCAGATCAAAATaGTCCTCAAAGCCACCAAGC +
Preference number: 3 (lower is better)
Translates to: LLYSIHLKRKSRTPVNKRLCRSK*SSKPPS
Trigger: GCTTGGTGGCTTTGAGGACAATTTTGATCTGCAGAG...CCTCTTATTAACTGGAGTTCTACTTTTTCTCTTCAGATGAATAGAATAGAGCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGACCCATCCTTTGGGGTaGCTTGTTTTTACTGTAGAC +
Preference number: 3 (lower is better)
Translates to: DSTSHKICTECIPATLILTHPLG*LVFTVD
Trigger: GTCTACAGTAAAAACAAGCAACCCCAAAGGATGGGT...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCAAAGGTTACCCATCCTTaGGGGTTGCTTGTTTTTACT +
Preference number: 3 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPKVTHP*GLLVFT
Trigger: AGTAAAAACAAGCAACCCCAAAGGATGGGTAACCTT...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR-3UTR CAA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCAAATGTTGGCTCTTGTTaGACACCAGAAATGCCATTT +
Preference number: 3 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPNVGSC*TPEMPF
Trigger: AAATGGCATTTCTGGTGTCAAACAAGAGCCAACATT...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR TCA 72 bp GAACTCCAGTTAATAAGAGGATGTCTTTGTTATTTCTaGTATACACAAATTCCAGCTTTCTCCACATCCTCC +
Preference number: 3 (lower is better)
Translates to: ELQLIRGCLCYF*YTQIPAFSTSS
Trigger: GGAGGATGTGGAGAAAGCTGGAATTTGTGTATATCAGAAATAACAAAGACATCCTCTTATTAACTGGAGTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGTGCCGGAGGAGCGACTaGGCGGGGAGGGGGTGGTCT +
Preference number: 4 (lower is better)
Translates to: LCRHYSGSHLRESLLRAACRRSD*AGRGWS
Trigger: AGACCACCCCCTCCCCGCCCAGTCGCTCCTCCGGCA...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp AGGGCAGGCTGGGAAACGGGTTTGCAGAACTGCCCATACTCTCCTGTGACTTGCTGCCGGAGGAGCGACTaGGCGGGGAGGGGGTGGTCT +
Preference number: 4 (lower is better)
Translates to: RAGWETGLQNCPYSPVTCCRRSD*AGRGWS
Trigger: AGACCACCCCCTCCCCGCCCAGTCGCTCCTCCGGCA...GCAAGTCACAGGAGAGTATGGGCAGTTCTGCAAACCCGTTTCCCAGCCTGCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTAGGTGGTCTCTGTGGTaGGGCAGGACGTGCCGGAGG +
Preference number: 4 (lower is better)
Translates to: YSGSHLRESLLRAAIHTARWSLW*GRTCRR
Trigger: CCTCCGGCACGTCCTGCCCCACCACAGAGACCACCT...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGGTATCCAGCGGGTCCTaGGCCTGCAAGTCCGGCTTG +
Preference number: 4 (lower is better)
Translates to: LCRHYSGSHLRESLLRAAVSSGS*ACKSGL
Trigger: CAAGCCGGACTTGCAGGCCCAGGACCCGCTGGATAC...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTGGGACTGGTCCGGGGTaGAGAACTTGGAGAAGTGCC +
Preference number: 4 (lower is better)
Translates to: YSGSHLRESLLRAAIHTAGTGPG*RTWRSA
Trigger: GGCACTTCTCCAAGTTCTTCACCCCGGACCAGTCCC...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGAGGACTCCTAGCCCCTaGAGGTGGAGGTGGTCTCTG +
Preference number: 4 (lower is better)
Translates to: LCRHYSGSHLRESLLRAARTPSP*RWRWSL
Trigger: CAGAGACCACCTCCACCTTCAGGGGCTAGGAGTCCT...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCGGCTCTGAGGGGCGCTaGTCACTCCAGCACGAGCTG +
Preference number: 4 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGGSEGR*SLQHEL
Trigger: CAGCTCGTGCTGGAGTGATCAGCGCCCCTCAGAGCC...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGAGGCAAGCTTTGAGATaGCCTGCTCCGAGGTGGGGG +
Preference number: 4 (lower is better)
Translates to: LCRHYSGSHLRESLLRAARQALR*PAPRWG
Trigger: CCCCCACCTCGGAGCAGGTCATCTCAAAGCTTGCCT...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCTGGTGGGGCAGGACGTaGCGGAGGAGCGACTGGGCG +
Preference number: 4 (lower is better)
Translates to: DFLTRQSYCSADITVVHTWWGRT*RRSDWA
Trigger: CGCCCAGTCGCTCCTCCGGCACGTCCTGCCCCACCA...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGTGGTGGGGCAGGACGTaGCGGAGGAGCGACTGGGCG +
Preference number: 4 (lower is better)
Translates to: STAESRAPGNWQTERYGRWWGRT*RRSDWA
Trigger: CGCCCAGTCGCTCCTCCGGCACGTCCTGCCCCACCA...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGTGCCGGAGGAGCGACTaGGCGGGGAGGGGGTGGTCT +
Preference number: 4 (lower is better)
Translates to: STAESRAPGNWQTERYGRCRRSD*AGRGWS
Trigger: AGACCACCCCCTCCCCGCCCAGTCGCTCCTCCGGCA...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTTCCGGCAGGGCAGGCTaGGAAACGGGTTTGCAGAAC +
Preference number: 4 (lower is better)
Translates to: YSGSHLRESLLRAAIHTASGRAG*ETGLQN
Trigger: GTTCTGCAAACCCGTTTCCCAGCCTGCCCTGCCGGA...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR GCA 90 bp AGGGCAGGCTGGGAAACGGGTTTGCAGAACTGCCCATACTCTCCTGTGACTTGCCGATGGGATCCCACTTaGAACCCTGGTTGCTCCCAG +
Preference number: 4 (lower is better)
Translates to: RAGWETGLQNCPYSPVTCRWDPT*NPGCSQ
Trigger: CTGGGAGCAACCAGGGTTGCAAGTGGGATCCCATCG...GCAAGTCACAGGAGAGTATGGGCAGTTCTGCAAACCCGTTTCCCAGCCTGCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGCTGGAGATGGTCTTCTaGAGCTCCACTGCCCACAGC +
Preference number: 4 (lower is better)
Translates to: LCRHYSGSHLRESLLRAALEMVF*SSTAHS
Trigger: GCTGTGGGCAGTGGAGCTGCAGAAGACCATCTCCAG...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGGTCTGCTGCGACCTCTaGGTCTTCACCAAGCAGGGT +
Preference number: 4 (lower is better)
Translates to: LCRHYSGSHLRESLLRAAVCCDL*VFTKQG
Trigger: ACCCTGCTTGGTGAAGACGCAGAGGTCGCAGCAGAC...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCATGGTGGGGCAGGACGTaGCGGAGGAGCGACTGGGCG +
Preference number: 4 (lower is better)
Translates to: FAKVLCPNRSALGEKCDAWWGRT*RRSDWA
Trigger: CGCCCAGTCGCTCCTCCGGCACGTCCTGCCCCACCA...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTGAGGGGGTGGTCTCTTaGGCTCTAGAGTCTGGGAAG +
Preference number: 4 (lower is better)
Translates to: YSGSHLRESLLRAAIHTAEGVVS*ALESGK
Trigger: CTTCCCAGACTCTAGAGCCCAAGAGACCACCCCCTC...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GAGGTGGTGGTGGTGGTGGCCTTCTGGCTGGCAACACACAGAAAGAAACGCTCGTCTGGATGGTTCTGGTaGCAGATCGCGCACCATCTT +
Preference number: 4 (lower is better)
Translates to: EVVVVVAFWLATHRKKRSSGWFW*QIAHHL
Trigger: AAGATGGTGCGCGATCTGTCACCAGAACCATCCAGA...CGAGCGTTTCTTTCTGTGTGTTGCCAGCCAGAAGGCCACCACCACCACCACCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTCTGCAGCAAAGTGGCTaGAGACGAAGCAAAGGCTGG +
Preference number: 4 (lower is better)
Translates to: YSGSHLRESLLRAAIHTALQQSG*RRSKGW
Trigger: CCAGCCTTTGCTTCGTCTGCAGCCACTTTGCTGCAG...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGGTTGGTTGCTCCTGCTaGAGCTGTGGTGAGGAGTCT +
Preference number: 4 (lower is better)
Translates to: LCRHYSGSHLRESLLRAAVGCSC*SCGEES
Trigger: AGACTCCTCACCACAGCTGCAGCAGGAGCAACCAAC...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTGTTGGTTGCTCCTGCTaGAGCTGTGGTGAGGAGTCT +
Preference number: 4 (lower is better)
Translates to: YSGSHLRESLLRAAIHTAVGCSC*SCGEES
Trigger: AGACTCCTCACCACAGCTGCAGCAGGAGCAACCAAC...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGTGCCCTGCAGCAAAGTaGCTGCAGACGAAGCAAAGG +
Preference number: 4 (lower is better)
Translates to: LCRHYSGSHLRESLLRAACPAAK*LQTKQR
Trigger: CCTTTGCTTCGTCTGCAGCCACTTTGCTGCAGGGCA...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTAGGTGGTCTCTGTGGTaGGGCAGGACGTGCCGGAGG +
Preference number: 4 (lower is better)
Translates to: AATRLPDKAELLLCRHYSRWSLW*GRTCRR
Trigger: CCTCCGGCACGTCCTGCCCCACCACAGAGACCACCT...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GCTTTCCTCTGGACCTGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGCTGGAGATGGTCTTCTaGAGCTCCACTGCCCACAGC +
Preference number: 4 (lower is better)
Translates to: AFLWTWRPGWHATYRTQRLEMVF*SSTAHS
Trigger: GCTGTGGGCAGTGGAGCTGCAGAAGACCATCTCCAG...CCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCAGGTCCAGAGGAAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp ACGGCCAACTGTAAATGCCCAGAGAAAGGCATCATAGAGGTACAGAGGAGGAAGCAGACACCCACCAGCTaGTCCGAGGCCAGCAGGACA +
Preference number: 4 (lower is better)
Translates to: TANCKCPEKGIIEVQRRKQTPTS*SEASRT
Trigger: TGTCCTGCTGGCCTCGGAGCAGCTGGTGGGTGTCTG...CTTCCTCCTCTGTACCTCTATGATGCCTTTCTCTGGGCATTTACAGTTGGCCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGCAGACACCCACCAGCTaGTCCGAGGCCAGCAGGACA +
Preference number: 4 (lower is better)
Translates to: STAESRAPGNWQTERYGRQTPTS*SEASRT
Trigger: TGTCCTGCTGGCCTCGGAGCAGCTGGTGGGTGTCTG...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGCGAAGCAAAGGCTGGTaGTGTGGAAGAGCATCCGAA +
Preference number: 4 (lower is better)
Translates to: LCRHYSGSHLRESLLRAARSKGW*CGRASE
Trigger: TTCGGATGCTCTTCCACACCACCAGCCTTTGCTTCG...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCAGTACTCTGGTACTGTaGGGGACTGGCAGGGACTGG +
Preference number: 4 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGSTLVL*GTGRDW
Trigger: CCAGTCCCTGCCAGTCCCCCACAGTACCAGAGTACT...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp AGGGCAGGCTGGGAAACGGGTTTGCAGAACTGCCCATACTCTCCTGTGACTTGCTTGGGCTCTAGAGTCTaGGAAGAATCCTTCTGGGCC +
Preference number: 4 (lower is better)
Translates to: RAGWETGLQNCPYSPVTCLGSRV*EESFWA
Trigger: GGCCCAGAAGGATTCTTCCCAGACTCTAGAGCCCAA...GCAAGTCACAGGAGAGTATGGGCAGTTCTGCAAACCCGTTTCCCAGCCTGCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGTTGGGCTCTAGAGTCTaGGAAGAATCCTTCTGGGCC +
Preference number: 4 (lower is better)
Translates to: LCRHYSGSHLRESLLRAALGSRV*EESFWA
Trigger: GGCCCAGAAGGATTCTTCCCAGACTCTAGAGCCCAA...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGTATCCAGCGGGTCCTaGGCCTGCAAGTCCGGCTTG +
Preference number: 4 (lower is better)
Translates to: AATRLPDKAELLLCRHYSVSSGS*ACKSGL
Trigger: CAAGCCGGACTTGCAGGCCCAGGACCCGCTGGATAC...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCGTATCCAGCGGGTCCTaGGCCTGCAAGTCCGGCTTG +
Preference number: 4 (lower is better)
Translates to: DFLTRQSYCSADITVVHTVSSGS*ACKSGL
Trigger: CAAGCCGGACTTGCAGGCCCAGGACCCGCTGGATAC...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCGACAGGAGGTGGTGGTaGTGGTGGCCTTCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: DFLTRQSYCSADITVVHTDRRWW*WWPSGW
Trigger: CCAGCCAGAAGGCCACCACCACCACCACCTCCTGTC...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
3UTR CAA 72 bp AACGGGTTTGCAGAACTGCCCATACTCTCCTGTGACTaGCTTTCCTCTGGACCTGGAGGCCTGGTTGGCATG +
Preference number: 4 (lower is better)
Translates to: NGFAELPILSCD*LSSGPGGLVGM
Trigger: CATGCCAACCAGGCCTCCAGGTCCAGAGGAAAGCAAGTCACAGGAGAGTATGGGCAGTTCTGCAAACCCGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTCAGACATGCATCCAGTaGCTAGGACCAGATAGTGCA +
Preference number: 4 (lower is better)
Translates to: YSGSHLRESLLRAAIHTAQTCIQ*LGPDSA
Trigger: TGCACTATCTGGTCCTAGTCACTGGATGCATGTCTG...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGCAGACATGCATCCAGTaGCTAGGACCAGATAGTGCA +
Preference number: 4 (lower is better)
Translates to: LCRHYSGSHLRESLLRAAQTCIQ*LGPDSA
Trigger: TGCACTATCTGGTCCTAGTCACTGGATGCATGTCTG...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp AGGGCAGGCTGGGAAACGGGTTTGCAGAACTGCCCATACTCTCCTGTGACTTGCCTACTCCCCCACACATaGGCCGTAATAACCAGTCAT +
Preference number: 4 (lower is better)
Translates to: RAGWETGLQNCPYSPVTCLLPHT*AVITSH
Trigger: ATGACTGGTTATTACGGCTCATGTGTGGGGGAGTAG...GCAAGTCACAGGAGAGTATGGGCAGTTCTGCAAACCCGTTTCCCAGCCTGCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGGGCTCTGAGGGGCGCTaGTCACTCCAGCACGAGCTG +
Preference number: 4 (lower is better)
Translates to: WRPGWHATYRTQRVNLTLGSEGR*SLQHEL
Trigger: CAGCTCGTGCTGGAGTGATCAGCGCCCCTCAGAGCC...CAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGAGGCAAGCTTTGAGATaGCCTGCTCCGAGGTGGGGG +
Preference number: 4 (lower is better)
Translates to: STAESRAPGNWQTERYGRRQALR*PAPRWG
Trigger: CCCCCACCTCGGAGCAGGTCATCTCAAAGCTTGCCT...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCGCCTTGCTCGTGTCATaGCTGAGAGGCATGAGAGGA +
Preference number: 4 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGALLVS*LRGMRG
Trigger: TCCTCTCATGCCTCTCAGTCATGACACGAGCAAGGC...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR GCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGGCCCTTGTTTCCAGTTaGACCTCCCATGCCAGTTTT +
Preference number: 4 (lower is better)
Translates to: LCRHYSGSHLRESLLRAAALVSS*TSHASF
Trigger: AAAACTGGCATGGGAGGTGCAACTGGAAACAAGGGC...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GAGGTGGTGGTGGTGGTGGCCTTCTGGCTGGCAACACACAGAAAGAAACGCTCGCATAGTGCAGCAAGGTaGCAGGGGTCCATGTATAAA +
Preference number: 4 (lower is better)
Translates to: EVVVVVAFWLATHRKKRSHSAAR*QGSMYK
Trigger: TTTATACATGGACCCCTGGCACCTTGCTGCACTATG...CGAGCGTTTCTTTCTGTGTGTTGCCAGCCAGAAGGCCACCACCACCACCACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GCTTTCCTCTGGACCTGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGTCAACTGGAGAGCCCTaGGAACTTGGAGGTCCTGGA +
Preference number: 4 (lower is better)
Translates to: AFLWTWRPGWHATYRTQRSTGEP*ELGGPG
Trigger: TCCAGGACCTCCAAGTTCGCAGGGCTCTCCAGTTGA...CCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCAGGTCCAGAGGAAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCTCAACTGGAGAGCCCTaGGAACTTGGAGGTCCTGGA +
Preference number: 4 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGSTGEP*ELGGPG
Trigger: TCCAGGACCTCCAAGTTCGCAGGGCTCTCCAGTTGA...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGAGCGGGTCCTGGGCCTaGAAGTCCGGCTTGAGGGGA +
Preference number: 4 (lower is better)
Translates to: WRPGWHATYRTQRVNLTLSGSWA*KSGLRG
Trigger: TCCCCTCAAGCCGGACTTGCAGGCCCAGGACCCGCT...CAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTTACTCTCCTGTGACTTaGTTTCCTCTGGACCTGGAG +
Preference number: 4 (lower is better)
Translates to: YSGSHLRESLLRAAIHTAYSPVT*FPLDLE
Trigger: CTCCAGGTCCAGAGGAAAGCAAGTCACAGGAGAGTA...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR CCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCTGCCCTGCAGCAAAGTaGCTGCAGACGAAGCAAAGG +
Preference number: 4 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGCPAAK*LQTKQR
Trigger: CCTTTGCTTCGTCTGCAGCCACTTTGCTGCAGGGCA...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGAGGTGGTCTCTGTGGTaGGGCAGGACGTGCCGGAGG +
Preference number: 4 (lower is better)
Translates to: WRPGWHATYRTQRVNLTLRWSLW*GRTCRR
Trigger: CCTCCGGCACGTCCTGCCCCACCACAGAGACCACCT...CAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTAGGCTTCAGTGGTTCTaGAAGGACAGCAGGACCTTT +
Preference number: 4 (lower is better)
Translates to: YSGSHLRESLLRAAIHTARLQWF*KDSRTF
Trigger: AAAGGTCCTGCTGTCCTTCCAGAACCACTGAAGCCT...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGACCTGGAGGCCTGGTTaGCATGCAACTTACAGAACT +
Preference number: 4 (lower is better)
Translates to: LCRHYSGSHLRESLLRAATWRPG*HATYRT
Trigger: AGTTCTGTAAGTTGCATGCCAACCAGGCCTCCAGGT...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR CCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCCTGGACCTGGAGGCCTaGTTGGCATGCAACTTACAG +
Preference number: 4 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGLDLEA*LACNLQ
Trigger: CTGTAAGTTGCATGCCAACCAGGCCTCCAGGTCCAG...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR TCA 90 bp GAGGTGGTGGTGGTGGTGGCCTTCTGGCTGGCAACACACAGAAAGAAACGCTCGTCAGAGGCTTTTAAATaGCTCTGGAAAGCCTTGCTC +
Preference number: 4 (lower is better)
Translates to: EVVVVVAFWLATHRKKRSSEAFK*LWKALL
Trigger: GAGCAAGGCTTTCCAGAGTCATTTAAAAGCCTCTGA...CGAGCGTTTCTTTCTGTGTGTTGCCAGCCAGAAGGCCACCACCACCACCACCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCTCTGGATGGTTCTGGTaGCAGATCGCGCACCATCTT +
Preference number: 4 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGSGWFW*QIAHHL
Trigger: AAGATGGTGCGCGATCTGTCACCAGAACCATCCAGA...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp AGGGCAGGCTGGGAAACGGGTTTGCAGAACTGCCCATACTCTCCTGTGACTTGCTGCAGAACTTTTGATTaGGACCAGCACTGTGCCATC +
Preference number: 4 (lower is better)
Translates to: RAGWETGLQNCPYSPVTCCRTFD*DQHCAI
Trigger: GATGGCACAGTGCTGGTCTCAATCAAAAGTTCTGCA...GCAAGTCACAGGAGAGTATGGGCAGTTCTGCAAACCCGTTTCCCAGCCTGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGAGGTCCTGGAGTTCTTaGCGGTGCTCGGCTAGGTCT +
Preference number: 4 (lower is better)
Translates to: STAESRAPGNWQTERYGRRSWSS*RCSARS
Trigger: AGACCTAGCCGAGCACCGTCAAGAACTCCAGGACCT...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp ACGGCCAACTGTAAATGCCCAGAGAAAGGCATCATAGAGGTACAGAGGAGGAAGAGGTCCTGGAGTTCTTaGCGGTGCTCGGCTAGGTCT +
Preference number: 4 (lower is better)
Translates to: TANCKCPEKGIIEVQRRKRSWSS*RCSARS
Trigger: AGACCTAGCCGAGCACCGTCAAGAACTCCAGGACCT...CTTCCTCCTCTGTACCTCTATGATGCCTTTCTCTGGGCATTTACAGTTGGCCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGGCTGGCTCTGAGGGGCGCTaGTCACTCCAGCACGAGCTG +
Preference number: 4 (lower is better)
Translates to: ESTSLGLGLEQVKSEQKAGSEGR*SLQHEL
Trigger: CAGCTCGTGCTGGAGTGATCAGCGCCCCTCAGAGCC...AGCCTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp AGGGCAGGCTGGGAAACGGGTTTGCAGAACTGCCCATACTCTCCTGTGACTTGCACTTGCAACCCTGGTTaGTCCCAGAACAATGGAACA +
Preference number: 4 (lower is better)
Translates to: RAGWETGLQNCPYSPVTCTCNPG*SQNNGT
Trigger: TGTTCCATTGTTCTGGGAGCAACCAGGGTTGCAAGT...GCAAGTCACAGGAGAGTATGGGCAGTTCTGCAAACCCGTTTCCCAGCCTGCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCCTTGAAACTCCTGGATaGCGGCTAACTTGGGAGCGT +
Preference number: 4 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGLETPG*RLTWER
Trigger: ACGCTCCCAAGTTAGCCGGCATCCAGGAGTTTCAAG...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp ACGGCCAACTGTAAATGCCCAGAGAAAGGCATCATAGAGGTACAGAGGAGGAAGCTGGAGATGGTCTTCTaGAGCTCCACTGCCCACAGC +
Preference number: 4 (lower is better)
Translates to: TANCKCPEKGIIEVQRRKLEMVF*SSTAHS
Trigger: GCTGTGGGCAGTGGAGCTGCAGAAGACCATCTCCAG...CTTCCTCCTCTGTACCTCTATGATGCCTTTCTCTGGGCATTTACAGTTGGCCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCTTGAGACCAGCACTGTaGCATCTGGTGGGCCCTGGA +
Preference number: 4 (lower is better)
Translates to: DFLTRQSYCSADITVVHTLRPAL*HLVGPG
Trigger: TCCAGGGCCCACCAGATGGCACAGTGCTGGTCTCAA...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTCCAAAGTGTGCAAACTaGCGCAGAAGCTCATCAATC +
Preference number: 4 (lower is better)
Translates to: YSGSHLRESLLRAAIHTAPKCAN*RRSSSI
Trigger: GATTGATGAGCTTCTGCGGCAGTTTGCACACTTTGG...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GCTTTCCTCTGGACCTGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGCACCATCTTTTAACTTaGCCTTCCCTTCCAGGGCCC +
Preference number: 4 (lower is better)
Translates to: AFLWTWRPGWHATYRTQRHHLLT*PSLPGP
Trigger: GGGCCCTGGAAGGGAAGGCCAAGTTAAAAGATGGTG...CCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCAGGTCCAGAGGAAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGCATACTTGTTGTCCCTaGAGATGGTCTTCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: LCRHYSGSHLRESLLRAAHTCCP*RWSSAA
Trigger: AGCTGCAGAAGACCATCTCCAGGGACAACAAGTATG...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp AGGGCAGGCTGGGAAACGGGTTTGCAGAACTGCCCATACTCTCCTGTGACTTGCCATACTTGTTGTCCCTaGAGATGGTCTTCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: RAGWETGLQNCPYSPVTCHTCCP*RWSSAA
Trigger: AGCTGCAGAAGACCATCTCCAGGGACAACAAGTATG...GCAAGTCACAGGAGAGTATGGGCAGTTCTGCAAACCCGTTTCCCAGCCTGCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGCACTGTGCCATCTGGTaGGCCCTGGACGGCAATAAC +
Preference number: 4 (lower is better)
Translates to: STAESRAPGNWQTERYGRHCAIW*ALDGNN
Trigger: GTTATTGCCGTCCAGGGCCCACCAGATGGCACAGTG...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCAGTACTCTGGTACTGTaGGGGACTGGCAGGGACTGG +
Preference number: 4 (lower is better)
Translates to: DFLTRQSYCSADITVVHTSTLVL*GTGRDW
Trigger: CCAGTCCCTGCCAGTCCCCCACAGTACCAGAGTACT...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGAGGGGGTGGTCTCTTaGGCTCTAGAGTCTGGGAAG +
Preference number: 4 (lower is better)
Translates to: STAESRAPGNWQTERYGREGVVS*ALESGK
Trigger: CTTCCCAGACTCTAGAGCCCAAGAGACCACCCCCTC...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGGCTTGGAGGTGGTCTCTGTaGTGGGGCAGGACGTGCCGG +
Preference number: 4 (lower is better)
Translates to: ESTSLGLGLEQVKSEQKAWRWSL*WGRTCR
Trigger: CCGGCACGTCCTGCCCCACCACAGAGACCACCTCCA...AGCCTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TGCCTTTCACAACAATCTCACCAGAACTCTGGAAGCTCTTTGGTAAGTATCCATGGCTCTGAGGGGCGCTaGTCACTCCAGCACGAGCTG +
Preference number: 4 (lower is better)
Translates to: CLSQQSHQNSGSSLVSIHGSEGR*SLQHEL
Trigger: CAGCTCGTGCTGGAGTGATCAGCGCCCCTCAGAGCC...ATGGATACTTACCAAAGAGCTTCCAGAGTTCTGGTGAGATTGTTGTGAAAGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGTTCGTACTTCCGAAATaGGGTCCTCATCTGAAGCAT +
Preference number: 4 (lower is better)
Translates to: LCRHYSGSHLRESLLRAAFVLPK*GPHLKH
Trigger: ATGCTTCAGATGAGGACCGCATTTCGGAAGTACGAA...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTTTCGTACTTCCGAAATaGGGTCCTCATCTGAAGCAT +
Preference number: 4 (lower is better)
Translates to: YSGSHLRESLLRAAIHTAFVLPK*GPHLKH
Trigger: ATGCTTCAGATGAGGACCGCATTTCGGAAGTACGAA...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCACGATGGGATCCCACTTaGAACCCTGGTTGCTCCCAG +
Preference number: 4 (lower is better)
Translates to: FAKVLCPNRSALGEKCDARWDPT*NPGCSQ
Trigger: CTGGGAGCAACCAGGGTTGCAAGTGGGATCCCATCG...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCCGTTCACATTCCAGGTaGCAACACACACTCGGATCT +
Preference number: 4 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGRSHSR*QHTLGS
Trigger: AGATCCGAGTGTGTGTTGGCACCTGGAATGTGAACG...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTCTGCAGCAAAGTGGCTaGAGACGAAGCAAAGGCTGG +
Preference number: 4 (lower is better)
Translates to: AATRLPDKAELLLCRHYSLQQSG*RRSKGW
Trigger: CCAGCCTTTGCTTCGTCTGCAGCCACTTTGCTGCAG...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp ACGGCCAACTGTAAATGCCCAGAGAAAGGCATCATAGAGGTACAGAGGAGGAAGCTGCAGATGAGGTTGTaGCAGGTGGTAGCAGAGGGA +
Preference number: 4 (lower is better)
Translates to: TANCKCPEKGIIEVQRRKLQMRL*QVVAEG
Trigger: TCCCTCTGCTACCACCTGGCACAACCTCATCTGCAG...CTTCCTCCTCTGTACCTCTATGATGCCTTTCTCTGGGCATTTACAGTTGGCCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR CCA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTCATTCACAGACCACATaGACCGGAAAACTTCTTGGA +
Preference number: 4 (lower is better)
Translates to: YSGSHLRESLLRAAIHTAHSQTT*TGKLLG
Trigger: TCCAAGAAGTTTTCCGGTCCATGTGGTCTGTGAATG...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCCAAAGGCTGGTGGTGTaGAAGAGCATCCGAATTGCA +
Preference number: 4 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGQRLVV*KSIRIA
Trigger: TGCAATTCGGATGCTCTTCCACACCACCAGCCTTTG...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCCCATCTGGTGGGCCCTaGACGGCAATAACTTCTTTA +
Preference number: 4 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGPSGGP*TAITSL
Trigger: TAAAGAAGTTATTGCCGTCCAGGGCCCACCAGATGG...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TCTTCAAATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATGGAGGTGGTCTCTGTaGTGGGGCAGGACGTGCCGG +
Preference number: 4 (lower is better)
Translates to: SSNGSLFNVGSCLTPEMPWRWSL*WGRTCR
Trigger: CCGGCACGTCCTGCCCCACCACAGAGACCACCTCCA...TGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATTTGAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTGTATCCAGCGGGTCCTaGGCCTGCAAGTCCGGCTTG +
Preference number: 4 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLVSSGS*ACKSGL
Trigger: CAAGCCGGACTTGCAGGCCCAGGACCCGCTGGATAC...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCGTTTCCAAATTTGGTTaGGGGCCAGAGGGAGGCATA +
Preference number: 4 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGVSKFG*GPEGGI
Trigger: TATGCCTCCCTCTGGCCCCCAACCAAATTTGGAAAC...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCTGGTGGCCTTCTGGCTaGCAACACACAGAAAGAAAC +
Preference number: 4 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGWWPSG*QHTERN
Trigger: GTTTCTTTCTGTGTGTTGCCAGCCAGAAGGCCACCA...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR CCA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGTGGTGGTGGCCTTCTaGCTGGCAACACACAGAAAG +
Preference number: 4 (lower is better)
Translates to: AATRLPDKAELLLCRHYSVVVAF*LATHRK
Trigger: CTTTCTGTGTGTTGCCAGCCAGAAGGCCACCACCAC...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR TCA 90 bp TGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGCTCCTTTTCTGCAGATaGGAGCACAGCCACAGCCCC +
Preference number: 4 (lower is better)
Translates to: WRPGWHATYRTQRVNLTLLLFCR*EHSHSP
Trigger: GGGGCTGTGGCTGTGCTCTCATCTGCAGAAAAGGAG...CAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCTCGGATTTGTATaGAGGAAGAGACACAGTCAT +
Preference number: 4 (lower is better)
Translates to: LCRHYSGSHLRESLLRAAILGFV*RKRHSH
Trigger: ATGACTGTGTCTCTTCCTTCATACAAATCCGAGGAT...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGGGTCCTGTAACTTTTaGGCAGGTGTGGGCAGAGAA +
Preference number: 4 (lower is better)
Translates to: STAESRAPGNWQTERYGRGSCNF*AGVGRE
Trigger: TTCTCTGCCCACACCTGCTCAAAAGTTACAGGACCC...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGGCTAGGCAAGCTTTGAGATaGCCTGCTCCGAGGTGGGGG +
Preference number: 4 (lower is better)
Translates to: ESTSLGLGLEQVKSEQKARQALR*PAPRWG
Trigger: CCCCCACCTCGGAGCAGGTCATCTCAAAGCTTGCCT...AGCCTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GCCTTTGATACAGCAAGCACACTAAGTGAGAGATCTTCAAATGGGTCACTCTTCAGGCAAGCTTTGAGATaGCCTGCTCCGAGGTGGGGG +
Preference number: 4 (lower is better)
Translates to: AFDTASTLSERSSNGSLFRQALR*PAPRWG
Trigger: CCCCCACCTCGGAGCAGGTCATCTCAAAGCTTGCCT...GAAGAGTGACCCATTTGAAGATCTCTCACTTAGTGTGCTTGCTGTATCAAAGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGTCTGAAGGCAAGCTTTaGGATGACCTGCTCCGAGGT +
Preference number: 4 (lower is better)
Translates to: STAESRAPGNWQTERYGRSEGKL*DDLLRG
Trigger: ACCTCGGAGCAGGTCATCTCAAAGCTTGCCTTCAGA...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCTCTGAAGGCAAGCTTTaGGATGACCTGCTCCGAGGT +
Preference number: 4 (lower is better)
Translates to: DFLTRQSYCSADITVVHTSEGKL*DDLLRG
Trigger: ACCTCGGAGCAGGTCATCTCAAAGCTTGCCTTCAGA...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGTCTGATTCTTGGGACTaGACTCTAAATGGGTTTCCA +
Preference number: 4 (lower is better)
Translates to: LCRHYSGSHLRESLLRAASDSWD*TLNGFP
Trigger: TGGAAACCCATTTAGAGTTCAGTCCCAAGAATCAGA...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR GCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGAAGCCAAGGAATGCCTaGACACTATTTGTTCTATCC +
Preference number: 4 (lower is better)
Translates to: LCRHYSGSHLRESLLRAAKPRNA*TLFVLS
Trigger: GGATAGAACAAATAGTGTGCAGGCATTCCTTGGCTT...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCCTTGAAACTCCTGGATaGCGGCTAACTTGGGAGCGT +
Preference number: 4 (lower is better)
Translates to: DFLTRQSYCSADITVVHTLETPG*RLTWER
Trigger: ACGCTCCCAAGTTAGCCGGCATCCAGGAGTTTCAAG...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp ACGGCCAACTGTAAATGCCCAGAGAAAGGCATCATAGAGGTACAGAGGAGGAAGTCTTTGACTTGGGACTaGCCTGCAGCAAAGTGGCTG +
Preference number: 4 (lower is better)
Translates to: TANCKCPEKGIIEVQRRKSLTWD*PAAKWL
Trigger: CAGCCACTTTGCTGCAGGGCAGTCCCAAGTCAAAGA...CTTCCTCCTCTGTACCTCTATGATGCCTTTCTCTGGGCATTTACAGTTGGCCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCAACTTCACCAAAGTGTaGAAACTGCCGCAGAAGCTC +
Preference number: 4 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGNFTKV*KLPQKL
Trigger: GAGCTTCTGCGGCAGTTTGCACACTTTGGTGAAGTT...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGTGGTGGGGCAGGACGTaGCGGAGGAGCGACTGGGCG +
Preference number: 4 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVWWGRT*RRSDWA
Trigger: CGCCCAGTCGCTCCTCCGGCACGTCCTGCCCCACCA...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp CAGCAATCTACTAGAGAGAACAGAGACTCACAGAGATTCTTAGTGTCTGTTTTCAGCGGGTCCTGGGCCTaGAAGTCCGGCTTGAGGGGA +
Preference number: 4 (lower is better)
Translates to: QQSTRENRDSQRFLVSVFSGSWA*KSGLRG
Trigger: TCCCCTCAAGCCGGACTTGCAGGCCCAGGACCCGCT...GAAAACAGACACTAAGAATCTCTGTGAGTCTCTGTTCTCTCTAGTAGATTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GCTTTCCTCTGGACCTGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGTATGAGGCTGAACGGTaGGGGATCCAATTTGTGGTA +
Preference number: 4 (lower is better)
Translates to: AFLWTWRPGWHATYRTQRYEAER*GIQFVV
Trigger: TACCACAAATTGGATCCCCCACCGTTCAGCCTCATA...CCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCAGGTCCAGAGGAAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGAGTACTCTGGTACTGTaGGGGACTGGCAGGGACTGG +
Preference number: 4 (lower is better)
Translates to: WRPGWHATYRTQRVNLTLSTLVL*GTGRDW
Trigger: CCAGTCCCTGCCAGTCCCCCACAGTACCAGAGTACT...CAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGGAGGGGGTGGTCTCTTaGGCTCTAGAGTCTGGGAAG +
Preference number: 4 (lower is better)
Translates to: WRPGWHATYRTQRVNLTLEGVVS*ALESGK
Trigger: CTTCCCAGACTCTAGAGCCCAAGAGACCACCCCCTC...CAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TCATGGATGTGCTATGTAGCCTCTTACATGGGAGAACATACACTGGACATGTTCCAGAGGGACAGGAGGTaGTGGTGGTGGTGGCCTTCT +
Preference number: 4 (lower is better)
Translates to: SWMCYVASYMGEHTLDMFQRDRR*WWWWPS
Trigger: AGAAGGCCACCACCACCACCACCTCCTGTCCCTCTG...GAACATGTCCAGTGTATGTTCTCCCATGTAAGAGGCTACATAGCACATCCATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR TCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTCTCCTTTTCTGCAGATaGGAGCACAGCCACAGCCCC +
Preference number: 4 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLLLFCR*EHSHSP
Trigger: GGGGCTGTGGCTGTGCTCTCATCTGCAGAAAAGGAG...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTAGGTCCTGGAGTTCTTaGCGGTGCTCGGCTAGGTCT +
Preference number: 4 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLRSWSS*RCSARS
Trigger: AGACCTAGCCGAGCACCGTCAAGAACTCCAGGACCT...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCATCTGAAGGCAAGCTTTaGGATGACCTGCTCCGAGGT +
Preference number: 4 (lower is better)
Translates to: FAKVLCPNRSALGEKCDASEGKL*DDLLRG
Trigger: ACCTCGGAGCAGGTCATCTCAAAGCTTGCCTTCAGA...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GCTTTCCTCTGGACCTGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGCTATTGTCGGTTGTGTaGTCTTGCATGCTTCGATGT +
Preference number: 4 (lower is better)
Translates to: AFLWTWRPGWHATYRTQRLLSVV*SCMLRC
Trigger: ACATCGAAGCATGCAAGAGCACACAACCGACAATAG...CCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCAGGTCCAGAGGAAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCGATGAGGCAAGCTTTTaGCTGTTTATGGGCAGCATA +
Preference number: 4 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGDEASF*LFMGSI
Trigger: TATGCTGCCCATAAACAGGCAAAAGCTTGCCTCATC...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGCTTCTGCAGCTCCACTaGCCACAGCTTCTGGTTGGT +
Preference number: 4 (lower is better)
Translates to: WRPGWHATYRTQRVNLTLLLQLH*PQLLVG
Trigger: ACCAACCAGAAGCTGTGGGCAGTGGAGCTGCAGAAG...CAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTGACTTGGGACTGCCCTaGAGCAAAGTGGCTGCAGAC +
Preference number: 4 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLDLGLP*SKVAAD
Trigger: GTCTGCAGCCACTTTGCTGCAGGGCAGTCCCAAGTC...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GCCTTTGATACAGCAAGCACACTAAGTGAGAGATCTTCAAATGGGTCACTCTTCTTGAGACCAGCACTGTaGCATCTGGTGGGCCCTGGA +
Preference number: 4 (lower is better)
Translates to: AFDTASTLSERSSNGSLFLRPAL*HLVGPG
Trigger: TCCAGGGCCCACCAGATGGCACAGTGCTGGTCTCAA...GAAGAGTGACCCATTTGAAGATCTCTCACTTAGTGTGCTTGCTGTATCAAAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTAAGAACTTGGAGAAGTaGCCAGGCCAGAACTTGAGG +
Preference number: 4 (lower is better)
Translates to: AATRLPDKAELLLCRHYSKNLEK*PGQNLR
Trigger: CCTCAAGTTCTGGCCTGGGCACTTCTCCAAGTTCTT...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGGTTGGTTGCTCCTGCTaGAGCTGTGGTGAGGAGTCT +
Preference number: 4 (lower is better)
Translates to: WRPGWHATYRTQRVNLTLVGCSC*SCGEES
Trigger: AGACTCCTCACCACAGCTGCAGCAGGAGCAACCAAC...CAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCGTCCAATGTGGAAGGTaGCTTAGATGGCAGGGTTGT +
Preference number: 4 (lower is better)
Translates to: DFLTRQSYCSADITVVHTVQCGR*LRWQGC
Trigger: ACAACCCTGCCATCTAAGGCACCTTCCACATTGGAC...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR CCA 90 bp GCTTTCCTCTGGACCTGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGCATTCACAGACCACATaGACCGGAAAACTTCTTGGA +
Preference number: 4 (lower is better)
Translates to: AFLWTWRPGWHATYRTQRHSQTT*TGKLLG
Trigger: TCCAAGAAGTTTTCCGGTCCATGTGGTCTGTGAATG...CCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCAGGTCCAGAGGAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCACACCATCTTTTAACTTaGCCTTCCCTTCCAGGGCCC +
Preference number: 4 (lower is better)
Translates to: FAKVLCPNRSALGEKCDAHHLLT*PSLPGP
Trigger: GGGCCCTGGAAGGGAAGGCCAAGTTAAAAGATGGTG...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGTCGAAGAAGTTATTCTaGATGGTTCTGGTGACAGAT +
Preference number: 4 (lower is better)
Translates to: LCRHYSGSHLRESLLRAASKKLF*MVLVTD
Trigger: ATCTGTCACCAGAACCATCCAGAATAACTTCTTCGA...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTCACTGTGCCATCTGGTaGGCCCTGGACGGCAATAAC +
Preference number: 4 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLHCAIW*ALDGNN
Trigger: GTTATTGCCGTCCAGGGCCCACCAGATGGCACAGTG...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TCTTCAAATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCAGGGACTGGCAGGGACTaGTCCGGGGTGAAGAACTTG +
Preference number: 4 (lower is better)
Translates to: SSNGSLFNVGSCLTPEMPGTGRD*SGVKNL
Trigger: CAAGTTCTTCACCCCGGACCAGTCCCTGCCAGTCCC...TGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATTTGAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp AATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTAGGTGGTCTCTGTGGTaGGGCAGGACGTGCCGGAGG +
Preference number: 4 (lower is better)
Translates to: NGSLFNVGSCLTPEMPFIRWSLW*GRTCRR
Trigger: CCTCCGGCACGTCCTGCCCCACCACAGAGACCACCT...AATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTAGGCTTCAGTGGTTCTaGAAGGACAGCAGGACCTTT +
Preference number: 4 (lower is better)
Translates to: AATRLPDKAELLLCRHYSRLQWF*KDSRTF
Trigger: AAAGGTCCTGCTGTCCTTCCAGAACCACTGAAGCCT...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGTTTCCAAATTTGGTTaGGGGCCAGAGGGAGGCATA +
Preference number: 4 (lower is better)
Translates to: STAESRAPGNWQTERYGRVSKFG*GPEGGI
Trigger: TATGCCTCCCTCTGGCCCCCAACCAAATTTGGAAAC...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TGCCTTTCACAACAATCTCACCAGAACTCTGGAAGCTCTTTGGTAAGTATCCATAGGTGGTGGTGGTGGTaGCCTTCTGGCTGGCAACAC +
Preference number: 4 (lower is better)
Translates to: CLSQQSHQNSGSSLVSIHRWWWW*PSGWQH
Trigger: GTGTTGCCAGCCAGAAGGCCACCACCACCACCACCT...ATGGATACTTACCAAAGAGCTTCCAGAGTTCTGGTGAGATTGTTGTGAAAGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR TCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTTGGTTCCCCGGACATTaGACCTTGTCCCAGCTCGTT +
Preference number: 4 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLWFPGH*TLSQLV
Trigger: AACGAGCTGGGACAAGGTTCAATGTCCGGGGAACCA...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGGCTTGGTTCCCCGGACATTaGACCTTGTCCCAGCTCGTT +
Preference number: 4 (lower is better)
Translates to: ESTSLGLGLEQVKSEQKAWFPGH*TLSQLV
Trigger: AACGAGCTGGGACAAGGTTCAATGTCCGGGGAACCA...AGCCTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGTGCAGAACTTTTGATTaGGACCAGCACTGTGCCATC +
Preference number: 4 (lower is better)
Translates to: STAESRAPGNWQTERYGRCRTFD*DQHCAI
Trigger: GATGGCACAGTGCTGGTCTCAATCAAAAGTTCTGCA...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp AGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGCGAGGGTCCTGTAACTTTTaGGCAGGTGTGGGCAGAGAA +
Preference number: 4 (lower is better)
Translates to: RPGWHATYRTQRVNLTLRGSCNF*AGVGRE
Trigger: TTCTCTGCCCACACCTGCTCAAAAGTTACAGGACCC...TCGCAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp ACGGCCAACTGTAAATGCCCAGAGAAAGGCATCATAGAGGTACAGAGGAGGAAGACTTGCAACCCTGGTTaGTCCCAGAACAATGGAACA +
Preference number: 4 (lower is better)
Translates to: TANCKCPEKGIIEVQRRKTCNPG*SQNNGT
Trigger: TGTTCCATTGTTCTGGGAGCAACCAGGGTTGCAAGT...CTTCCTCCTCTGTACCTCTATGATGCCTTTCTCTGGGCATTTACAGTTGGCCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp ACGGCCAACTGTAAATGCCCAGAGAAAGGCATCATAGAGGTACAGAGGAGGAAGTTAAGTGTTCGGAAATaGCTGTCAAAGGCAGGCGCA +
Preference number: 4 (lower is better)
Translates to: TANCKCPEKGIIEVQRRKLSVRK*LSKAGA
Trigger: TGCGCCTGCCTTTGACAGGCATTTCCGAACACTTAA...CTTCCTCCTCTGTACCTCTATGATGCCTTTCTCTGGGCATTTACAGTTGGCCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TCATGGATGTGCTATGTAGCCTCTTACATGGGAGAACATACACTGGACATGTTCGCTATGCTGCGGAACTaGTTCCCGCCGTTCACATTC +
Preference number: 4 (lower is better)
Translates to: SWMCYVASYMGEHTLDMFAMLRN*FPPFTF
Trigger: GAATGTGAACGGCGGGAAGCAGTTCCGCAGCATAGC...GAACATGTCCAGTGTATGTTCTCCCATGTAAGAGGCTACATAGCACATCCATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp AGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGCGACTTGAAACTCCTGGATaGCGGCTAACTTGGGAGCGT +
Preference number: 4 (lower is better)
Translates to: RPGWHATYRTQRVNLTLRLETPG*RLTWER
Trigger: ACGCTCCCAAGTTAGCCGGCATCCAGGAGTTTCAAG...TCGCAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTCTTCTGCAGCTCCACTaGCCACAGCTTCTGGTTGGT +
Preference number: 4 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLLLQLH*PQLLVG
Trigger: ACCAACCAGAAGCTGTGGGCAGTGGAGCTGCAGAAG...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTCATAGTGCAGCAAGGTaGCAGGGGTCCATGTATAAA +
Preference number: 4 (lower is better)
Translates to: AATRLPDKAELLLCRHYSHSAAR*QGSMYK
Trigger: TTTATACATGGACCCCTGGCACCTTGCTGCACTATG...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TGCCTTTCACAACAATCTCACCAGAACTCTGGAAGCTCTTTGGTAAGTATCCATGTCTGCTGCGACCTCTaGGTCTTCACCAAGCAGGGT +
Preference number: 4 (lower is better)
Translates to: CLSQQSHQNSGSSLVSIHVCCDL*VFTKQG
Trigger: ACCCTGCTTGGTGAAGACGCAGAGGTCGCAGCAGAC...ATGGATACTTACCAAAGAGCTTCCAGAGTTCTGGTGAGATTGTTGTGAAAGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TCTTCAAATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCAGTCTGCTGCGACCTCTaGGTCTTCACCAAGCAGGGT +
Preference number: 4 (lower is better)
Translates to: SSNGSLFNVGSCLTPEMPVCCDL*VFTKQG
Trigger: ACCCTGCTTGGTGAAGACGCAGAGGTCGCAGCAGAC...TGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATTTGAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTTTTACAGCGGGTCCTGGGCCTaGAAGTCCGGCTTGAGGGGA +
Preference number: 4 (lower is better)
Translates to: VTLQCWLLFDTRNAIYFYSGSWA*KSGLRG
Trigger: TCCCCTCAAGCCGGACTTGCAGGCCCAGGACCCGCT...GTAAAAATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GCCTTTGATACAGCAAGCACACTAAGTGAGAGATCTTCAAATGGGTCACTCTTCAGGCTGCTGAGGAAATaGAGCCTGAGGCTTCAGTGG +
Preference number: 4 (lower is better)
Translates to: AFDTASTLSERSSNGSLFRLLRK*SLRLQW
Trigger: CCACTGAAGCCTCAGGCTGCATTTCCTCAGCAGCCT...GAAGAGTGACCCATTTGAAGATCTCTCACTTAGTGTGCTTGCTGTATCAAAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCCTGTCTCTACAAAGTTaGCAACATGACCATCATCGT +
Preference number: 4 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGLSLQS*QHDHHR
Trigger: ACGATGATGGTCATGTTGCCAACTTTGTAGAGACAG...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GTCAAAGGTTACCCATCCTTTGGGGTTGCTTGTTTTTACTGTAGACTGGCTCTGTCCCACTTGCAACCCTaGTTGCTCCCAGAACAATGG +
Preference number: 4 (lower is better)
Translates to: VKGYPSFGVACFYCRLALSHLQP*LLPEQW
Trigger: CCATTGTTCTGGGAGCAACCAGGGTTGCAAGTGGGA...CAGAGCCAGTCTACAGTAAAAACAAGCAACCCCAAAGGATGGGTAACCTTTGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGTTTCTCTCTTTGACTTaGGACTGCCCTGCAGCAAAG +
Preference number: 4 (lower is better)
Translates to: STAESRAPGNWQTERYGRFLSLT*DCPAAK
Trigger: CTTTGCTGCAGGGCAGTCCCAAGTCAAAGAGAGAAA...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTGCAACGACGGGCCTATaGTCAGAAGTCTTCAGCTCG +
Preference number: 4 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLATTGL*SEVFSS
Trigger: CGAGCTGAAGACTTCTGACCATAGGCCCGTCGTTGC...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TCATGGATGTGCTATGTAGCCTCTTACATGGGAGAACATACACTGGACATGTTCCTTCACCAAGCAGGGTaGAGCTTGCTGATGAGGGCA +
Preference number: 4 (lower is better)
Translates to: SWMCYVASYMGEHTLDMFLHQAG*SLLMRA
Trigger: TGCCCTCATCAGCAAGCTCCACCCTGCTTGGTGAAG...GAACATGTCCAGTGTATGTTCTCCCATGTAAGAGGCTACATAGCACATCCATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGTGGAGGTGGTCTCTGTaGTGGGGCAGGACGTGCCGG +
Preference number: 4 (lower is better)
Translates to: DSTSHKICTECIPATLILWRWSL*WGRTCR
Trigger: CCGGCACGTCCTGCCCCACCACAGAGACCACCTCCA...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGTGGAGGTGGTCTCTGTaGTGGGGCAGGACGTGCCGG +
Preference number: 4 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVWRWSL*WGRTCR
Trigger: CCGGCACGTCCTGCCCCACCACAGAGACCACCTCCA...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GTCAAAGGTTACCCATCCTTTGGGGTTGCTTGTTTTTACTGTAGACTGGCTCTGCCCCAGACTCGAACATaGGACATTCTTCCTTATGCC +
Preference number: 4 (lower is better)
Translates to: VKGYPSFGVACFYCRLALPQTRT*DILPYA
Trigger: GGCATAAGGAAGAATGTCTCATGTTCGAGTCTGGGG...CAGAGCCAGTCTACAGTAAAAACAAGCAACCCCAAAGGATGGGTAACCTTTGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCTCAGAGGCTTTTAAATaGCTCTGGAAAGCCTTGCTC +
Preference number: 4 (lower is better)
Translates to: DFLTRQSYCSADITVVHTSEAFK*LWKALL
Trigger: GAGCAAGGCTTTCCAGAGTCATTTAAAAGCCTCTGA...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGCCACTCTGGCACCTTTaGACTTCACTGCCATCGAAA +
Preference number: 4 (lower is better)
Translates to: WRPGWHATYRTQRVNLTLPLWHL*TSLPSK
Trigger: TTTCGATGGCAGTGAAGTTCAAAGGTGCCAGAGTGG...CAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCACAGCTAAATCGCTGTTaGGAGTATTTCCCAGGAGCA +
Preference number: 4 (lower is better)
Translates to: FAKVLCPNRSALGEKCDAQLNRC*EYFPGA
Trigger: TGCTCCTGGGAAATACTCTCAACAGCGATTTAGCTG...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCTTACTTCTCTTATCTTaGAACTCCTGGATGCCGGCT +
Preference number: 4 (lower is better)
Translates to: DFLTRQSYCSADITVVHTLLLLS*NSWMPA
Trigger: AGCCGGCATCCAGGAGTTTCAAGATAAGAGAAGTAA...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCAAGGACTCCTAGCCCCTaGAGGTGGAGGTGGTCTCTG +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPRTPSP*RWRWSL
Trigger: CAGAGACCACCTCCACCTTCAGGGGCTAGGAGTCCT...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp AATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTAGGACTCCTAGCCCCTaGAGGTGGAGGTGGTCTCTG +
Preference number: 4 (lower is better)
Translates to: NGSLFNVGSCLTPEMPFIRTPSP*RWRWSL
Trigger: CAGAGACCACCTCCACCTTCAGGGGCTAGGAGTCCT...AATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGGCTGGGTCCTGTAACTTTTaGGCAGGTGTGGGCAGAGAA +
Preference number: 4 (lower is better)
Translates to: ESTSLGLGLEQVKSEQKAGSCNF*AGVGRE
Trigger: TTCTCTGCCCACACCTGCTCAAAAGTTACAGGACCC...AGCCTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGGCTTCTGAAGGCAAGCTTTaGGATGACCTGCTCCGAGGT +
Preference number: 4 (lower is better)
Translates to: ESTSLGLGLEQVKSEQKASEGKL*DDLLRG
Trigger: ACCTCGGAGCAGGTCATCTCAAAGCTTGCCTTCAGA...AGCCTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCATGTTGGCTCTTGTTTaGCACCAGAAATGCCATTTA +
Preference number: 4 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGMLALV*HQKCHL
Trigger: TAAATGGCATTTCTGGTGTCAAACAAGAGCCAACAT...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR TCA 90 bp ACGGCCAACTGTAAATGCCCAGAGAAAGGCATCATAGAGGTACAGAGGAGGAAGAGCAAGCACACTAAGTaGGAGATCTTCAAATGGGTC +
Preference number: 4 (lower is better)
Translates to: TANCKCPEKGIIEVQRRKSKHTK*EIFKWV
Trigger: GACCCATTTGAAGATCTCTCACTTAGTGTGCTTGCT...CTTCCTCCTCTGTACCTCTATGATGCCTTTCTCTGGGCATTTACAGTTGGCCGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR GCA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCAGACATTCTTCCTTATaGCTAGTTTCCACTATGAGG +
Preference number: 4 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGRHSSL*LVSTMR
Trigger: CCTCATAGTGGAAACTAGGCATAAGGAAGAATGTCT...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGCGTTCACATTCCAGGTaGCAACACACACTCGGATCT +
Preference number: 4 (lower is better)
Translates to: WRPGWHATYRTQRVNLTLRSHSR*QHTLGS
Trigger: AGATCCGAGTGTGTGTTGGCACCTGGAATGTGAACG...CAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GGAGATCTAAATCTTCAGCTGATCTGTCAAAAGGCCACTTCCTCCTTCTCCAGACGTTCACATTCCAGGTaGCAACACACACTCGGATCT +
Preference number: 4 (lower is better)
Translates to: GDLNLQLICQKATSSFSRRSHSR*QHTLGS
Trigger: AGATCCGAGTGTGTGTTGGCACCTGGAATGTGAACG...TCTGGAGAAGGAGGAAGTGGCCTTTTGACAGATCAGCTGAAGATTTAGATCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231472.2
CDS-3UTR GCA 90 bp ACTTCAAATATATCTATGTCAATCAAGGCAACGACGGGCCTATGGTCAGAAGTCGCTATGCTGCGGAACTaGTTCCCGCCGTTCACATTC +
Preference number: 4 (lower is better)
Translates to: TSNISMSIKATTGLWSEVAMLRN*FPPFTF
Trigger: GAATGTGAACGGCGGGAAGCAGTTCCGCAGCATAGC...GACTTCTGACCATAGGCCCGTCGTTGCCTTGATTGACATAGATATATTTGAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231472.2
CDS-3UTR GCA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGCAGACACCCACCAGCTaGTCCGAGGCCAGCAGGACA +
Preference number: 4 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVQTPTS*SEASRT
Trigger: TGTCCTGCTGGCCTCGGAGCAGCTGGTGGGTGTCTG...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TGCCTTTCACAACAATCTCACCAGAACTCTGGAAGCTCTTTGGTAAGTATCCATCTGCAGCAAAGTGGCTaGAGACGAAGCAAAGGCTGG +
Preference number: 4 (lower is better)
Translates to: CLSQQSHQNSGSSLVSIHLQQSG*RRSKGW
Trigger: CCAGCCTTTGCTTCGTCTGCAGCCACTTTGCTGCAG...ATGGATACTTACCAAAGAGCTTCCAGAGTTCTGGTGAGATTGTTGTGAAAGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp ACTGAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGAGGCTGCTGAGGAAATaGAGCCTGAGGCTTCAGTGG +
Preference number: 4 (lower is better)
Translates to: TESTSLGLGLEQVKSEQKRLLRK*SLRLQW
Trigger: CCACTGAAGCCTCAGGCTGCATTTCCTCAGCAGCCT...CTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCTCCAGGGCTTTTGGGTaGTCCAAATTCTTTTCTAGC +
Preference number: 4 (lower is better)
Translates to: DFLTRQSYCSADITVVHTSRAFG*SKFFSS
Trigger: GCTAGAAAAGAATTTGGAGCACCCAAAAGCCCTGGA...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154276.8
CDS-3UTR CCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCACCCACAGCTTCTGGTTaGTTGTGCTTGCATTCACAA +
Preference number: 4 (lower is better)
Translates to: FAKVLCPNRSALGEKCDAPTASG*LCLHSQ
Trigger: TTGTGAATGCAAGCACAACCAACCAGAAGCTGTGGG...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp AGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGCGACAAAGGCTGGTGGTGTaGAAGAGCATCCGAATTGCA +
Preference number: 4 (lower is better)
Translates to: RPGWHATYRTQRVNLTLRQRLVV*KSIRIA
Trigger: TGCAATTCGGATGCTCTTCCACACCACCAGCCTTTG...TCGCAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GTCAAAGGTTACCCATCCTTTGGGGTTGCTTGTTTTTACTGTAGACTGGCTCTGGTTTCCAAATTTGGTTaGGGGCCAGAGGGAGGCATA +
Preference number: 4 (lower is better)
Translates to: VKGYPSFGVACFYCRLALVSKFG*GPEGGI
Trigger: TATGCCTCCCTCTGGCCCCCAACCAAATTTGGAAAC...CAGAGCCAGTCTACAGTAAAAACAAGCAACCCCAAAGGATGGGTAACCTTTGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCAGGGACAGGAGGTGGTaGTGGTGGTGGCCTTCTGGC +
Preference number: 4 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFRDRRW*WWWPSG
Trigger: GCCAGAAGGCCACCACCACCACCACCTCCTGTCCCT...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR TCA 90 bp GAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGGCTCCCCAGACTCGAACATaGGACATTCTTCCTTATGCC +
Preference number: 4 (lower is better)
Translates to: ESTSLGLGLEQVKSEQKAPQTRT*DILPYA
Trigger: GGCATAAGGAAGAATGTCTCATGTTCGAGTCTGGGG...AGCCTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCATCACACCATAGTGCTTaGGATGCAAATGCAGAGACT +
Preference number: 4 (lower is better)
Translates to: FAKVLCPNRSALGEKCDASHHSA*DANAET
Trigger: AGTCTCTGCATTTGCATCTCAAGCACTATGGTGTGA...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGGCTCTACTCCCCCACACATaGGCCGTAATAACCAGTCAT +
Preference number: 4 (lower is better)
Translates to: ESTSLGLGLEQVKSEQKALLPHT*AVITSH
Trigger: ATGACTGGTTATTACGGCTCATGTGTGGGGGAGTAG...AGCCTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TCATGGATGTGCTATGTAGCCTCTTACATGGGAGAACATACACTGGACATGTTCCTACTCCCCCACACATaGGCCGTAATAACCAGTCAT +
Preference number: 4 (lower is better)
Translates to: SWMCYVASYMGEHTLDMFLLPHT*AVITSH
Trigger: ATGACTGGTTATTACGGCTCATGTGTGGGGGAGTAG...GAACATGTCCAGTGTATGTTCTCCCATGTAAGAGGCTACATAGCACATCCATGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTGGCTTCAAATCCCCTTaGCATACGAACACGATGGGA +
Preference number: 4 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLGFKSP*HTNTMG
Trigger: TCCCATCGTGTTCGTATGTCAAGGGGATTTGAAGCC...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTCCACTCTGGCACCTTTaGACTTCACTGCCATCGAAA +
Preference number: 4 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLPLWHL*TSLPSK
Trigger: TTTCGATGGCAGTGAAGTTCAAAGGTGCCAGAGTGG...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGGGGACTGGTCCGGGGTaGAGAACTTGGAGAAGTGCC +
Preference number: 4 (lower is better)
Translates to: DSTSHKICTECIPATLILGTGPG*RTWRSA
Trigger: GGCACTTCTCCAAGTTCTTCACCCCGGACCAGTCCC...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp AGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGCGAACTTGCAACCCTGGTTaGTCCCAGAACAATGGAACA +
Preference number: 4 (lower is better)
Translates to: RPGWHATYRTQRVNLTLRTCNPG*SQNNGT
Trigger: TGTTCCATTGTTCTGGGAGCAACCAGGGTTGCAAGT...TCGCAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTAAGCCAAGGAATGCCTaGACACTATTTGTTCTATCC +
Preference number: 4 (lower is better)
Translates to: AATRLPDKAELLLCRHYSKPRNA*TLFVLS
Trigger: GGATAGAACAAATAGTGTGCAGGCATTCCTTGGCTT...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGACATCAATGGCTTCCTaGTTGGAGCTGTCGAAGAAG +
Preference number: 4 (lower is better)
Translates to: WRPGWHATYRTQRVNLTLTSMAS*LELSKK
Trigger: CTTCTTCGACAGCTCCAAGCAGGAAGCCATTGATGT...CAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCACAGTTGCACCTCCCATaGCAGTTTTCACAGTATCAA +
Preference number: 4 (lower is better)
Translates to: FAKVLCPNRSALGEKCDAQLHLP*QFSQYQ
Trigger: TTGATACTGTGAAAACTGGCATGGGAGGTGCAACTG...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCAGACTTGGGACTGCCCTaGAGCAAAGTGGCTGCAGAC +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPDLGLP*SKVAAD
Trigger: GTCTGCAGCCACTTTGCTGCAGGGCAGTCCCAAGTC...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GCTTTCCTCTGGACCTGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGTCTAAAGATCTGTCCTaGATTTTTCTGGTTGATGAG +
Preference number: 4 (lower is better)
Translates to: AFLWTWRPGWHATYRTQRSKDLS*IFLVDE
Trigger: CTCATCAACCAGAAAAATGCAGGACAGATCTTTAGA...CCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCAGGTCCAGAGGAAAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TCATGGATGTGCTATGTAGCCTCTTACATGGGAGAACATACACTGGACATGTTCAAGAACTTGGAGAAGTaGCCAGGCCAGAACTTGAGG +
Preference number: 4 (lower is better)
Translates to: SWMCYVASYMGEHTLDMFKNLEK*PGQNLR
Trigger: CCTCAAGTTCTGGCCTGGGCACTTCTCCAAGTTCTT...GAACATGTCCAGTGTATGTTCTCCCATGTAAGAGGCTACATAGCACATCCATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTTATATTATCTTTCCGTaGTGTTCCAGGGCTTTTGGG +
Preference number: 4 (lower is better)
Translates to: AATRLPDKAELLLCRHYSYIIFP*CSRAFG
Trigger: CCCAAAAGCCCTGGAACAGCACGGAAAGATAATATA...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGTATGAGGCTGAACGGTaGGGGATCCAATTTGTGGTA +
Preference number: 4 (lower is better)
Translates to: WRPGWHATYRTQRVNLTLYEAER*GIQFVV
Trigger: TACCACAAATTGGATCCCCCACCGTTCAGCCTCATA...CAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCATTGCTCCCAGAACAATaGAACAGATCCTCGGATTTG +
Preference number: 4 (lower is better)
Translates to: FAKVLCPNRSALGEKCDALLPEQ*NRSSDL
Trigger: CAAATCCGAGGATCTGTTCCATTGTTCTGGGAGCAA...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp ACTGAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGTCCCACTTGCAACCCTaGTTGCTCCCAGAACAATGG +
Preference number: 4 (lower is better)
Translates to: TESTSLGLGLEQVKSEQKSHLQP*LLPEQW
Trigger: CCATTGTTCTGGGAGCAACCAGGGTTGCAAGTGGGA...CTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TCATGGATGTGCTATGTAGCCTCTTACATGGGAGAACATACACTGGACATGTTCCAAAGGCTGGTGGTGTaGAAGAGCATCCGAATTGCA +
Preference number: 4 (lower is better)
Translates to: SWMCYVASYMGEHTLDMFQRLVV*KSIRIA
Trigger: TGCAATTCGGATGCTCTTCCACACCACCAGCCTTTG...GAACATGTCCAGTGTATGTTCTCCCATGTAAGAGGCTACATAGCACATCCATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCACACTGTGCCATCTGGTaGGCCCTGGACGGCAATAAC +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPHCAIW*ALDGNN
Trigger: GTTATTGCCGTCCAGGGCCCACCAGATGGCACAGTG...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTTTTACGGGACTGGCAGGGACTaGTCCGGGGTGAAGAACTTG +
Preference number: 4 (lower is better)
Translates to: VTLQCWLLFDTRNAIYFYGTGRD*SGVKNL
Trigger: CAAGTTCTTCACCCCGGACCAGTCCCTGCCAGTCCC...GTAAAAATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTCTGTTCCAGGGCTTTTaGGTGCTTCTATCTCTCTCC +
Preference number: 4 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLLFQGF*VLLSLS
Trigger: GGAGAGAGATAGAAGCACCCAAAAGCCCTGGAACAG...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGGCTCTGTTCCAGGGCTTTTaGGTGCTTCTATCTCTCTCC +
Preference number: 4 (lower is better)
Translates to: ESTSLGLGLEQVKSEQKALFQGF*VLLSLS
Trigger: GGAGAGAGATAGAAGCACCCAAAAGCCCTGGAACAG...AGCCTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
3UTR CAA 72 bp GGAAAGTTGTCGTCTTCGTCAAAGGTTACCCATCCTTaGGGGTTGCTTGTTTTTACTGTAGACTGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: GKLSSSSKVTHP*GLLVFTVDWLC
Trigger: GCAGAGCCAGTCTACAGTAAAAACAAGCAACCCCAAAGGATGGGTAACCTTTGACGAAGACGACAACTTTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCATTCGAAATCCTTTGCTaGACGCCATTCTCCTTTCTT +
Preference number: 4 (lower is better)
Translates to: FAKVLCPNRSALGEKCDAFEILC*TPFSFL
Trigger: AAGAAAGGAGAATGGCGTTCAGCAAAGGATTTCGAA...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
CDS-3UTR TCA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGCTCCTTTTCTGCAGATaGGAGCACAGCCACAGCCCC +
Preference number: 4 (lower is better)
Translates to: DSTSHKICTECIPATLILLLFCR*EHSHSP
Trigger: GGGGCTGTGGCTGTGCTCTCATCTGCAGAAAAGGAG...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp ACTGAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGGGCTTCAAATCCCCTTaGCATACGAACACGATGGGA +
Preference number: 4 (lower is better)
Translates to: TESTSLGLGLEQVKSEQKGFKSP*HTNTMG
Trigger: TCCCATCGTGTTCGTATGTCAAGGGGATTTGAAGCC...CTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TGCCTTTCACAACAATCTCACCAGAACTCTGGAAGCTCTTTGGTAAGTATCCATGGCTTCAAATCCCCTTaGCATACGAACACGATGGGA +
Preference number: 4 (lower is better)
Translates to: CLSQQSHQNSGSSLVSIHGFKSP*HTNTMG
Trigger: TCCCATCGTGTTCGTATGTCAAGGGGATTTGAAGCC...ATGGATACTTACCAAAGAGCTTCCAGAGTTCTGGTGAGATTGTTGTGAAAGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCCTGCATATATTTTACTaGTTGAGTCGCCATTCACAG +
Preference number: 4 (lower is better)
Translates to: DFLTRQSYCSADITVVHTLHIFY*LSRHSQ
Trigger: CTGTGAATGGCGACTCAATCAGTAAAATATATGCAG...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GCCTTTGATACAGCAAGCACACTAAGTGAGAGATCTTCAAATGGGTCACTCTTCCAGCTAAATCGCTGTTaGGAGTATTTCCCAGGAGCA +
Preference number: 4 (lower is better)
Translates to: AFDTASTLSERSSNGSLFQLNRC*EYFPGA
Trigger: TGCTCCTGGGAAATACTCTCAACAGCGATTTAGCTG...GAAGAGTGACCCATTTGAAGATCTCTCACTTAGTGTGCTTGCTGTATCAAAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp CTGCTCTATTCTATTCATCTGAAGAGAAAAAGTAGAACTCCAGTTAATAAGAGGAGGACTCCTAGCCCCTaGAGGTGGAGGTGGTCTCTG +
Preference number: 4 (lower is better)
Translates to: LLYSIHLKRKSRTPVNKRRTPSP*RWRWSL
Trigger: CAGAGACCACCTCCACCTTCAGGGGCTAGGAGTCCT...CCTCTTATTAACTGGAGTTCTACTTTTTCTCTTCAGATGAATAGAATAGAGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTAGAAGGCTGAGCCTTTaGTACAGCAAGCACACTAAG +
Preference number: 4 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLRRLSL*YSKHTK
Trigger: CTTAGTGTGCTTGCTGTATCAAAGGCTCAGCCTTCT...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR GCA 90 bp AGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGCGAGATGAGGCAAGCTTTTaGCTGTTTATGGGCAGCATA +
Preference number: 4 (lower is better)
Translates to: RPGWHATYRTQRVNLTLRDEASF*LFMGSI
Trigger: TATGCTGCCCATAAACAGGCAAAAGCTTGCCTCATC...TCGCAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCCGATGGGATCCCACTTaGAACCCTGGTTGCTCCCAG +
Preference number: 4 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFRWDPT*NPGCSQ
Trigger: CTGGGAGCAACCAGGGTTGCAAGTGGGATCCCATCG...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTACATCAATGGCTTCCTaGTTGGAGCTGTCGAAGAAG +
Preference number: 4 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLTSMAS*LELSKK
Trigger: CTTCTTCGACAGCTCCAAGCAGGAAGCCATTGATGT...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp CAAGGTGCCAGGGGTCCATGTATAAAGAATTTTACTTTCATCTTGGAAACTAGCCTTGAAACTCCTGGATaGCGGCTAACTTGGGAGCGT +
Preference number: 4 (lower is better)
Translates to: QGARGPCIKNFTFILETSLETPG*RLTWER
Trigger: ACGCTCCCAAGTTAGCCGGCATCCAGGAGTTTCAAG...GCTAGTTTCCAAGATGAAAGTAAAATTCTTTATACATGGACCCCTGGCACCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231472.2
CDS-3UTR GCA 90 bp ACTGAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGGCCCTTGTTTCCAGTTaGACCTCCCATGCCAGTTTT +
Preference number: 4 (lower is better)
Translates to: TESTSLGLGLEQVKSEQKALVSS*TSHASF
Trigger: AAAACTGGCATGGGAGGTGCAACTGGAAACAAGGGC...CTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCGACTTGGGACTGCCCTaGAGCAAAGTGGCTGCAGAC +
Preference number: 4 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFDLGLP*SKVAAD
Trigger: GTCTGCAGCCACTTTGCTGCAGGGCAGTCCCAAGTC...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp CAGCAATCTACTAGAGAGAACAGAGACTCACAGAGATTCTTAGTGTCTGTTTTCTCTTTGACTTGGGACTaGCCTGCAGCAAAGTGGCTG +
Preference number: 4 (lower is better)
Translates to: QQSTRENRDSQRFLVSVFSLTWD*PAAKWL
Trigger: CAGCCACTTTGCTGCAGGGCAGTCCCAAGTCAAAGA...GAAAACAGACACTAAGAATCTCTGTGAGTCTCTGTTCTCTCTAGTAGATTGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTTTTACTTGAGACCAGCACTGTaGCATCTGGTGGGCCCTGGA +
Preference number: 4 (lower is better)
Translates to: VTLQCWLLFDTRNAIYFYLRPAL*HLVGPG
Trigger: TCCAGGGCCCACCAGATGGCACAGTGCTGGTCTCAA...GTAAAAATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCATCAACTGGAGAGCCCTaGGAACTTGGAGGTCCTGGA +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPSTGEP*ELGGPG
Trigger: TCCAGGACCTCCAAGTTCGCAGGGCTCTCCAGTTGA...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp AATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTAGGCTGCTGAGGAAATaGAGCCTGAGGCTTCAGTGG +
Preference number: 4 (lower is better)
Translates to: NGSLFNVGSCLTPEMPFIRLLRK*SLRLQW
Trigger: CCACTGAAGCCTCAGGCTGCATTTCCTCAGCAGCCT...AATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp ACGGCCAACTGTAAATGCCCAGAGAAAGGCATCATAGAGGTACAGAGGAGGAAGCCAGATAGTGCAGCATaGTATCACCAAGATTTAATC +
Preference number: 4 (lower is better)
Translates to: TANCKCPEKGIIEVQRRKPDSAA*YHQDLI
Trigger: GATTAAATCTTGGTGATACCATGCTGCACTATCTGG...CTTCCTCCTCTGTACCTCTATGATGCCTTTCTCTGGGCATTTACAGTTGGCCGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCACTGTCTCTACAAAGTTaGCAACATGACCATCATCGT +
Preference number: 4 (lower is better)
Translates to: FAKVLCPNRSALGEKCDALSLQS*QHDHHR
Trigger: ACGATGATGGTCATGTTGCCAACTTTGTAGAGACAG...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGTTGCTCCCAGAACAATaGAACAGATCCTCGGATTTG +
Preference number: 4 (lower is better)
Translates to: WRPGWHATYRTQRVNLTLLLPEQ*NRSSDL
Trigger: CAAATCCGAGGATCTGTTCCATTGTTCTGGGAGCAA...CAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGACACTCGGATCTTCTTaGGCTTTGAGTATTTGTAGA +
Preference number: 4 (lower is better)
Translates to: STAESRAPGNWQTERYGRTLGSS*ALSICR
Trigger: TCTACAAATACTCAAAGCCCAAGAAGATCCGAGTGT...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGGCTCCCACAGCTTCTGGTTaGTTGTGCTTGCATTCACAA +
Preference number: 4 (lower is better)
Translates to: ESTSLGLGLEQVKSEQKAPTASG*LCLHSQ
Trigger: TTGTGAATGCAAGCACAACCAACCAGAAGCTGTGGG...AGCCTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGGCTTTTCTCTCTTTGACTTaGGACTGCCCTGCAGCAAAG +
Preference number: 4 (lower is better)
Translates to: ESTSLGLGLEQVKSEQKAFLSLT*DCPAAK
Trigger: CTTTGCTGCAGGGCAGTCCCAAGTCAAAGAGAGAAA...AGCCTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCATGCGACACTTCTCACTaGTGTCATAGTCTTCAGAAA +
Preference number: 4 (lower is better)
Translates to: FAKVLCPNRSALGEKCDACDTSH*CHSLQK
Trigger: TTTCTGAAGACTATGACACCAGTGAGAAGTGTCGCA...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp CTGCTCTATTCTATTCATCTGAAGAGAAAAAGTAGAACTCCAGTTAATAAGAGGGGGACTGGCAGGGACTaGTCCGGGGTGAAGAACTTG +
Preference number: 4 (lower is better)
Translates to: LLYSIHLKRKSRTPVNKRGTGRD*SGVKNL
Trigger: CAAGTTCTTCACCCCGGACCAGTCCCTGCCAGTCCC...CCTCTTATTAACTGGAGTTCTACTTTTTCTCTTCAGATGAATAGAATAGAGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TGCCTTTCACAACAATCTCACCAGAACTCTGGAAGCTCTTTGGTAAGTATCCATAGGCTTCAGTGGTTCTaGAAGGACAGCAGGACCTTT +
Preference number: 4 (lower is better)
Translates to: CLSQQSHQNSGSSLVSIHRLQWF*KDSRTF
Trigger: AAAGGTCCTGCTGTCCTTCCAGAACCACTGAAGCCT...ATGGATACTTACCAAAGAGCTTCCAGAGTTCTGGTGAGATTGTTGTGAAAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TGCCTTTCACAACAATCTCACCAGAACTCTGGAAGCTCTTTGGTAAGTATCCATGTTTCCAAATTTGGTTaGGGGCCAGAGGGAGGCATA +
Preference number: 4 (lower is better)
Translates to: CLSQQSHQNSGSSLVSIHVSKFG*GPEGGI
Trigger: TATGCCTCCCTCTGGCCCCCAACCAAATTTGGAAAC...ATGGATACTTACCAAAGAGCTTCCAGAGTTCTGGTGAGATTGTTGTGAAAGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCAGTCACTCTTCAATGTTaGCTCTTGTTTGACACCAGA +
Preference number: 4 (lower is better)
Translates to: FAKVLCPNRSALGEKCDAVTLQC*LLFDTR
Trigger: TCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGAC...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR CCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCAAGGTTACCCATCCTTTaGGGTTGCTTGTTTTTACTG +
Preference number: 4 (lower is better)
Translates to: FAKVLCPNRSALGEKCDARLPIL*GCLFLL
Trigger: CAGTAAAAACAAGCAACCCCAAAGGATGGGTAACCT...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
3UTR CAA 72 bp TTGTCGTCTTCGTCAAAGGTTACCCATCCTTTGGGGTaGCTTGTTTTTACTGTAGACTGGCTCTGCAGATCA +
Preference number: 4 (lower is better)
Translates to: LSSSSKVTHPLG*LVFTVDWLCRS
Trigger: TGATCTGCAGAGCCAGTCTACAGTAAAAACAAGCAACCCCAAAGGATGGGTAACCTTTGACGAAGACGACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR CAA 72 bp GGACAAACTGACTTTGACTTTCCTGTTGTAGGAAAGTaGTCGTCTTCGTCAAAGGTTACCCATCCTTTGGGG +
Preference number: 4 (lower is better)
Translates to: GQTDFDFPVVGK*SSSSKVTHPLG
Trigger: CCCCAAAGGATGGGTAACCTTTGACGAAGACGACAACTTTCCTACAACAGGAAAGTCAAAGTCAGTTTGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp CAGCAATCTACTAGAGAGAACAGAGACTCACAGAGATTCTTAGTGTCTGTTTTCCCCCAGACTCGAACATaGGACATTCTTCCTTATGCC +
Preference number: 4 (lower is better)
Translates to: QQSTRENRDSQRFLVSVFPQTRT*DILPYA
Trigger: GGCATAAGGAAGAATGTCTCATGTTCGAGTCTGGGG...GAAAACAGACACTAAGAATCTCTGTGAGTCTCTGTTCTCTCTAGTAGATTGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GCCTTTGATACAGCAAGCACACTAAGTGAGAGATCTTCAAATGGGTCACTCTTCAGCTTAGTCTTGAGATaGGGCAAGCTTTTGCCTGTT +
Preference number: 4 (lower is better)
Translates to: AFDTASTLSERSSNGSLFSLVLR*GKLLPV
Trigger: AACAGGCAAAAGCTTGCCTCATCTCAAGACTAAGCT...GAAGAGTGACCCATTTGAAGATCTCTCACTTAGTGTGCTTGCTGTATCAAAGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTAGCTTAGTCTTGAGATaGGGCAAGCTTTTGCCTGTT +
Preference number: 4 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLSLVLR*GKLLPV
Trigger: AACAGGCAAAAGCTTGCCTCATCTCAAGACTAAGCT...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGTGGTTCCCCGGACATTaGACCTTGTCCCAGCTCGTT +
Preference number: 4 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVWFPGH*TLSQLV
Trigger: AACGAGCTGGGACAAGGTTCAATGTCCGGGGAACCA...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp ACGGCCAACTGTAAATGCCCAGAGAAAGGCATCATAGAGGTACAGAGGAGGAAGTCTGGACTTGTGGTTTaGGAATACTGTGTAGTTTTT +
Preference number: 4 (lower is better)
Translates to: TANCKCPEKGIIEVQRRKSGLVV*EYCVVF
Trigger: AAAAACTACACAGTATTCTCAAACCACAAGTCCAGA...CTTCCTCCTCTGTACCTCTATGATGCCTTTCTCTGGGCATTTACAGTTGGCCGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp CAGCAATCTACTAGAGAGAACAGAGACTCACAGAGATTCTTAGTGTCTGTTTTCCTTCATTTCTCTCTTTaGCTTGGGACTGCCCTGCAG +
Preference number: 4 (lower is better)
Translates to: QQSTRENRDSQRFLVSVFLHFSL*LGTALQ
Trigger: CTGCAGGGCAGTCCCAAGTCAAAGAGAGAAATGAAG...GAAAACAGACACTAAGAATCTCTGTGAGTCTCTGTTCTCTCTAGTAGATTGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GCCTTTGATACAGCAAGCACACTAAGTGAGAGATCTTCAAATGGGTCACTCTTCTTCGTACTTCCGAAATaGGGTCCTCATCTGAAGCAT +
Preference number: 4 (lower is better)
Translates to: AFDTASTLSERSSNGSLFFVLPK*GPHLKH
Trigger: ATGCTTCAGATGAGGACCGCATTTCGGAAGTACGAA...GAAGAGTGACCCATTTGAAGATCTCTCACTTAGTGTGCTTGCTGTATCAAAGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTTTGTGTGCTCTTGCATaGTTCGATGTGCATTCAGAC +
Preference number: 4 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLLCALA*FDVHSD
Trigger: GTCTGAATGCACATCGAAGCATGCAAGAGCACACAA...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTCTATTGTCGGTTGTGTaGTCTTGCATGCTTCGATGT +
Preference number: 4 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLLLSVV*SCMLRC
Trigger: ACATCGAAGCATGCAAGAGCACACAACCGACAATAG...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTTTTACGCTATGCTGCGGAACTaGTTCCCGCCGTTCACATTC +
Preference number: 4 (lower is better)
Translates to: VTLQCWLLFDTRNAIYFYAMLRN*FPPFTF
Trigger: GAATGTGAACGGCGGGAAGCAGTTCCGCAGCATAGC...GTAAAAATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGCTTCTGCAGCTCCACTaGCCACAGCTTCTGGTTGGT +
Preference number: 4 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVLLQLH*PQLLVG
Trigger: ACCAACCAGAAGCTGTGGGCAGTGGAGCTGCAGAAG...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TCTTCAAATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCACATAGTGCAGCAAGGTaGCAGGGGTCCATGTATAAA +
Preference number: 4 (lower is better)
Translates to: SSNGSLFNVGSCLTPEMPHSAAR*QGSMYK
Trigger: TTTATACATGGACCCCTGGCACCTTGCTGCACTATG...TGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATTTGAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp ACTGAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGCCAAAGTGTGCAAACTaGCGCAGAAGCTCATCAATC +
Preference number: 4 (lower is better)
Translates to: TESTSLGLGLEQVKSEQKPKCAN*RRSSSI
Trigger: GATTGATGAGCTTCTGCGGCAGTTTGCACACTTTGG...CTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TCTTCAAATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCAAACTTCACCAAAGTGTaGAAACTGCCGCAGAAGCTC +
Preference number: 4 (lower is better)
Translates to: SSNGSLFNVGSCLTPEMPNFTKV*KLPQKL
Trigger: GAGCTTCTGCGGCAGTTTGCACACTTTGGTGAAGTT...TGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATTTGAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGAGGCTGCTGAGGAAATaGAGCCTGAGGCTTCAGTGG +
Preference number: 4 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVRLLRK*SLRLQW
Trigger: CCACTGAAGCCTCAGGCTGCATTTCCTCAGCAGCCT...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCAAACTTGACTTTGCGATaGAGAAGGCAACTGAATCAA +
Preference number: 4 (lower is better)
Translates to: FAKVLCPNRSALGEKCDANLTLR*RRQLNQ
Trigger: TTGATTCAGTTGCCTTCTGCATCGCAAAGTCAAGTT...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR CCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCACCAGATAGTGCAGCATaGTATCACCAAGATTTAATC +
Preference number: 4 (lower is better)
Translates to: FAKVLCPNRSALGEKCDAPDSAA*YHQDLI
Trigger: GATTAAATCTTGGTGATACCATGCTGCACTATCTGG...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCATCCCACTTGCAACCCTaGTTGCTCCCAGAACAATGG +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPSHLQP*LLPEQW
Trigger: CCATTGTTCTGGGAGCAACCAGGGTTGCAAGTGGGA...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCATCGAAGAAGTTATTCTaGATGGTTCTGGTGACAGAT +
Preference number: 4 (lower is better)
Translates to: FAKVLCPNRSALGEKCDASKKLF*MVLVTD
Trigger: ATCTGTCACCAGAACCATCCAGAATAACTTCTTCGA...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp ACTGAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGCATACTTGTTGTCCCTaGAGATGGTCTTCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: TESTSLGLGLEQVKSEQKHTCCP*RWSSAA
Trigger: AGCTGCAGAAGACCATCTCCAGGGACAACAAGTATG...CTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGTGCCCTGCAGCAAAGTaGCTGCAGACGAAGCAAAGG +
Preference number: 4 (lower is better)
Translates to: DSTSHKICTECIPATLILCPAAK*LQTKQR
Trigger: CCTTTGCTTCGTCTGCAGCCACTTTGCTGCAGGGCA...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GTCAAAGGTTACCCATCCTTTGGGGTTGCTTGTTTTTACTGTAGACTGGCTCTGTGCGACACTTCTCACTaGTGTCATAGTCTTCAGAAA +
Preference number: 4 (lower is better)
Translates to: VKGYPSFGVACFYCRLALCDTSH*CHSLQK
Trigger: TTTCTGAAGACTATGACACCAGTGAGAAGTGTCGCA...CAGAGCCAGTCTACAGTAAAAACAAGCAACCCCAAAGGATGGGTAACCTTTGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCGCAACGACGGGCCTATaGTCAGAAGTCTTCAGCTCG +
Preference number: 4 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFATTGL*SEVFSS
Trigger: CGAGCTGAAGACTTCTGACCATAGGCCCGTCGTTGC...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGGCAACGACGGGCCTATaGTCAGAAGTCTTCAGCTCG +
Preference number: 4 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVATTGL*SEVFSS
Trigger: CGAGCTGAAGACTTCTGACCATAGGCCCGTCGTTGC...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGCTTCACCAAGCAGGGTaGAGCTTGCTGATGAGGGCA +
Preference number: 4 (lower is better)
Translates to: DSTSHKICTECIPATLILLHQAG*SLLMRA
Trigger: TGCCCTCATCAGCAAGCTCCACCCTGCTTGGTGAAG...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp AGATCTTCAAATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGAGGCTTCAGTGGTTCTaGAAGGACAGCAGGACCTTT +
Preference number: 4 (lower is better)
Translates to: RSSNGSLFNVGSCLTPEMRLQWF*KDSRTF
Trigger: AAAGGTCCTGCTGTCCTTCCAGAACCACTGAAGCCT...CATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATTTGAAGATCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TCATGGATGTGCTATGTAGCCTCTTACATGGGAGAACATACACTGGACATGTTCTTCGAAATCCTTTGCTaGACGCCATTCTCCTTTCTT +
Preference number: 4 (lower is better)
Translates to: SWMCYVASYMGEHTLDMFFEILC*TPFSFL
Trigger: AAGAAAGGAGAATGGCGTTCAGCAAAGGATTTCGAA...GAACATGTCCAGTGTATGTTCTCCCATGTAAGAGGCTACATAGCACATCCATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
CDS-3UTR TCA 90 bp GTCAAAGGTTACCCATCCTTTGGGGTTGCTTGTTTTTACTGTAGACTGGCTCTGTGCAAATGCAGAGACTaGTTCCAGAAAAACCTATTG +
Preference number: 4 (lower is better)
Translates to: VKGYPSFGVACFYCRLALCKCRD*FQKNLL
Trigger: CAATAGGTTTTTCTGGAATCAGTCTCTGCATTTGCA...CAGAGCCAGTCTACAGTAAAAACAAGCAACCCCAAAGGATGGGTAACCTTTGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TCTTCAAATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATCAGAGGCTTTTAAATaGCTCTGGAAAGCCTTGCTC +
Preference number: 4 (lower is better)
Translates to: SSNGSLFNVGSCLTPEMPSEAFK*LWKALL
Trigger: GAGCAAGGCTTTCCAGAGTCATTTAAAAGCCTCTGA...TGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATTTGAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGTCTGGATGGTTCTGGTaGCAGATCGCGCACCATCTT +
Preference number: 4 (lower is better)
Translates to: DSTSHKICTECIPATLILSGWFW*QIAHHL
Trigger: AAGATGGTGCGCGATCTGTCACCAGAACCATCCAGA...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp CAGCAATCTACTAGAGAGAACAGAGACTCACAGAGATTCTTAGTGTCTGTTTTCTGCAGAACTTTTGATTaGGACCAGCACTGTGCCATC +
Preference number: 4 (lower is better)
Translates to: QQSTRENRDSQRFLVSVFCRTFD*DQHCAI
Trigger: GATGGCACAGTGCTGGTCTCAATCAAAAGTTCTGCA...GAAAACAGACACTAAGAATCTCTGTGAGTCTCTGTTCTCTCTAGTAGATTGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTTTTACGGGTCCTGTAACTTTTaGGCAGGTGTGGGCAGAGAA +
Preference number: 4 (lower is better)
Translates to: VTLQCWLLFDTRNAIYFYGSCNF*AGVGRE
Trigger: TTCTCTGCCCACACCTGCTCAAAAGTTACAGGACCC...GTAAAAATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCTCTGAAGGCAAGCTTTaGGATGACCTGCTCCGAGGT +
Preference number: 4 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFSEGKL*DDLLRG
Trigger: ACCTCGGAGCAGGTCATCTCAAAGCTTGCCTTCAGA...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCAGCCCTTGTTTCCAGTTaGACCTCCCATGCCAGTTTT +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPALVSS*TSHASF
Trigger: AAAACTGGCATGGGAGGTGCAACTGGAAACAAGGGC...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCAAAGAACTTGGAGAAGTaGCCAGGCCAGAACTTGAGG +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPKNLEK*PGQNLR
Trigger: CCTCAAGTTCTGGCCTGGGCACTTCTCCAAGTTCTT...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCACAAAGGCAGGCGCATTaGCTTCAAATCCCCTTGACA +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPQRQAH*LQIPLT
Trigger: TGTCAAGGGGATTTGAAGCCAATGCGCCTGCCTTTG...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGCACCATCTTTTAACTTaGCCTTCCCTTCCAGGGCCC +
Preference number: 4 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVHHLLT*PSLPGP
Trigger: GGGCCCTGGAAGGGAAGGCCAAGTTAAAAGATGGTG...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGCGAAGCAAAGGCTGGTaGTGTGGAAGAGCATCCGAA +
Preference number: 4 (lower is better)
Translates to: DSTSHKICTECIPATLILRSKGW*CGRASE
Trigger: TTCGGATGCTCTTCCACACCACCAGCCTTTGCTTCG...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCACCATCTGGTGGGCCCTaGACGGCAATAACTTCTTTA +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPPSGGP*TAITSL
Trigger: TAAAGAAGTTATTGCCGTCCAGGGCCCACCAGATGG...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp CTGCTCTATTCTATTCATCTGAAGAGAAAAAGTAGAACTCCAGTTAATAAGAGGCTTCACCAAGCAGGGTaGAGCTTGCTGATGAGGGCA +
Preference number: 4 (lower is better)
Translates to: LLYSIHLKRKSRTPVNKRLHQAG*SLLMRA
Trigger: TGCCCTCATCAGCAAGCTCCACCCTGCTTGGTGAAG...CCTCTTATTAACTGGAGTTCTACTTTTTCTCTTCAGATGAATAGAATAGAGCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp AATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTGTTTCCAAATTTGGTTaGGGGCCAGAGGGAGGCATA +
Preference number: 4 (lower is better)
Translates to: NGSLFNVGSCLTPEMPFIVSKFG*GPEGGI
Trigger: TATGCCTCCCTCTGGCCCCCAACCAAATTTGGAAAC...AATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCAGGACTGAACTCTAAATaGGTTTCCAGGGGCAGCAGT +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPGLNSK*VSRGSS
Trigger: ACTGCTGCCCCTGGAAACCCATTTAGAGTTCAGTCC...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR CCA 90 bp CAGCAATCTACTAGAGAGAACAGAGACTCACAGAGATTCTTAGTGTCTGTTTTCGAACAGGCTCTTCTTTaGAGAGCCAAGAAGTTGCCT +
Preference number: 4 (lower is better)
Translates to: QQSTRENRDSQRFLVSVFEQALL*RAKKLP
Trigger: AGGCAACTTCTTGGCTCTCCAAAGAAGAGCCTGTTC...GAAAACAGACACTAAGAATCTCTGTGAGTCTCTGTTCTCTCTAGTAGATTGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR CCA 90 bp ACTGAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGCTGTTCCAGGGCTTTTaGGTGCTCCAAATTCTTTTC +
Preference number: 4 (lower is better)
Translates to: TESTSLGLGLEQVKSEQKLFQGF*VLQILF
Trigger: GAAAAGAATTTGGAGCACCCAAAAGCCCTGGAACAG...CTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000154276.8
3UTR CAA 72 bp CTTTCACAACAATCTCACCAGAACTCTGGAAGCTCTTaGGTAAGTATCCATGACTACCAATCCTCAACAGCA +
Preference number: 4 (lower is better)
Translates to: LSQQSHQNSGSS*VSIHDYQSSTA
Trigger: TGCTGTTGAGGATTGGTAGTCATGGATACTTACCAAAGAGCTTCCAGAGTTCTGGTGAGATTGTTGTGAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR CAA 72 bp GATCCACACTGCTTCAGTTTTCTAAAGTGGATTAGCTaGCTAATGGGGAGTGGATACCATACACACTACTCA +
Preference number: 4 (lower is better)
Translates to: DPHCFSFLKWIS*LMGSGYHTHYS
Trigger: TGAGTAGTGTGTATGGTATCCACTCCCCATTAGCAAGCTAATCCACTTTAGAAAACTGAAGCAGTGTGGATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGCAGACATGCATCCAGTaGCTAGGACCAGATAGTGCA +
Preference number: 4 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVQTCIQ*LGPDSA
Trigger: TGCACTATCTGGTCCTAGTCACTGGATGCATGTCTG...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TCATGGATGTGCTATGTAGCCTCTTACATGGGAGAACATACACTGGACATGTTCAGCATCAACTCGCAATaGTATAAACTCAGTGGAAGT +
Preference number: 4 (lower is better)
Translates to: SWMCYVASYMGEHTLDMFSINSQ*YKLSGS
Trigger: ACTTCCACTGAGTTTATATCATTGCGAGTTGATGCT...GAACATGTCCAGTGTATGTTCTCCCATGTAAGAGGCTACATAGCACATCCATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCCCACTCTGGCACCTTTaGACTTCACTGCCATCGAAA +
Preference number: 4 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFPLWHL*TSLPSK
Trigger: TTTCGATGGCAGTGAAGTTCAAAGGTGCCAGAGTGG...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TCATGGATGTGCTATGTAGCCTCTTACATGGGAGAACATACACTGGACATGTTCCTGCATATATTTTACTaGTTGAGTCGCCATTCACAG +
Preference number: 4 (lower is better)
Translates to: SWMCYVASYMGEHTLDMFLHIFY*LSRHSQ
Trigger: CTGTGAATGGCGACTCAATCAGTAAAATATATGCAG...GAACATGTCCAGTGTATGTTCTCCCATGTAAGAGGCTACATAGCACATCCATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGGCTCTGCATATATTTTACTaGTTGAGTCGCCATTCACAG +
Preference number: 4 (lower is better)
Translates to: ESTSLGLGLEQVKSEQKALHIFY*LSRHSQ
Trigger: CTGTGAATGGCGACTCAATCAGTAAAATATATGCAG...AGCCTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp CTGCTCTATTCTATTCATCTGAAGAGAAAAAGTAGAACTCCAGTTAATAAGAGGGGGTCCTGTAACTTTTaGGCAGGTGTGGGCAGAGAA +
Preference number: 4 (lower is better)
Translates to: LLYSIHLKRKSRTPVNKRGSCNF*AGVGRE
Trigger: TTCTCTGCCCACACCTGCTCAAAAGTTACAGGACCC...CCTCTTATTAACTGGAGTTCTACTTTTTCTCTTCAGATGAATAGAATAGAGCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp CAGCAATCTACTAGAGAGAACAGAGACTCACAGAGATTCTTAGTGTCTGTTTTCTTGTGTGCTCTTGCATaGTTCGATGTGCATTCAGAC +
Preference number: 4 (lower is better)
Translates to: QQSTRENRDSQRFLVSVFLCALA*FDVHSD
Trigger: GTCTGAATGCACATCGAAGCATGCAAGAGCACACAA...GAAAACAGACACTAAGAATCTCTGTGAGTCTCTGTTCTCTCTAGTAGATTGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp CAGCAATCTACTAGAGAGAACAGAGACTCACAGAGATTCTTAGTGTCTGTTTTCCTATTGTCGGTTGTGTaGTCTTGCATGCTTCGATGT +
Preference number: 4 (lower is better)
Translates to: QQSTRENRDSQRFLVSVFLLSVV*SCMLRC
Trigger: ACATCGAAGCATGCAAGAGCACACAACCGACAATAG...GAAAACAGACACTAAGAATCTCTGTGAGTCTCTGTTCTCTCTAGTAGATTGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCAACATCAATGGCTTCCTaGTTGGAGCTGTCGAAGAAG +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPTSMAS*LELSKK
Trigger: CTTCTTCGACAGCTCCAAGCAGGAAGCCATTGATGT...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp AGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGCGATCTAAAGATCTGTCCTaGATTTTTCTGGTTGATGAG +
Preference number: 4 (lower is better)
Translates to: RPGWHATYRTQRVNLTLRSKDLS*IFLVDE
Trigger: CTCATCAACCAGAAAAATGCAGGACAGATCTTTAGA...TCGCAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TGCCTTTCACAACAATCTCACCAGAACTCTGGAAGCTCTTTGGTAAGTATCCATTATATTATCTTTCCGTaGTGTTCCAGGGCTTTTGGG +
Preference number: 4 (lower is better)
Translates to: CLSQQSHQNSGSSLVSIHYIIFP*CSRAFG
Trigger: CCCAAAAGCCCTGGAACAGCACGGAAAGATAATATA...ATGGATACTTACCAAAGAGCTTCCAGAGTTCTGGTGAGATTGTTGTGAAAGGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp ACTGAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGTATATTATCTTTCCGTaGTGTTCCAGGGCTTTTGGG +
Preference number: 4 (lower is better)
Translates to: TESTSLGLGLEQVKSEQKYIIFP*CSRAFG
Trigger: CCCAAAAGCCCTGGAACAGCACGGAAAGATAATATA...CTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TGCCTTTCACAACAATCTCACCAGAACTCTGGAAGCTCTTTGGTAAGTATCCATCCATTTATTTTTACCTaGAGCTGTGGTGAGGAGTCT +
Preference number: 4 (lower is better)
Translates to: CLSQQSHQNSGSSLVSIHPFIFT*SCGEES
Trigger: AGACTCCTCACCACAGCTGCAGGTAAAAATAAATGG...ATGGATACTTACCAAAGAGCTTCCAGAGTTCTGGTGAGATTGTTGTGAAAGGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR CCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCATATGAGGCTGAACGGTaGGGGATCCAATTTGTGGTA +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPYEAER*GIQFVV
Trigger: TACCACAAATTGGATCCCCCACCGTTCAGCCTCATA...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGCAAAGGCAGGCGCATTaGCTTCAAATCCCCTTGACA +
Preference number: 4 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVQRQAH*LQIPLT
Trigger: TGTCAAGGGGATTTGAAGCCAATGCGCCTGCCTTTG...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCATGTTCTTTAAGACTTTaGAAGATGCTGACTGTAATG +
Preference number: 4 (lower is better)
Translates to: FAKVLCPNRSALGEKCDACSLRL*KMLTVM
Trigger: CATTACAGTCAGCATCTTCCAAAGTCTTAAAGAACA...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp CTGCTCTATTCTATTCATCTGAAGAGAAAAAGTAGAACTCCAGTTAATAAGAGGCGAAGCAAAGGCTGGTaGTGTGGAAGAGCATCCGAA +
Preference number: 4 (lower is better)
Translates to: LLYSIHLKRKSRTPVNKRRSKGW*CGRASE
Trigger: TTCGGATGCTCTTCCACACCACCAGCCTTTGCTTCG...CCTCTTATTAACTGGAGTTCTACTTTTTCTCTTCAGATGAATAGAATAGAGCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGCCATCTGGTGGGCCCTaGACGGCAATAACTTCTTTA +
Preference number: 4 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVPSGGP*TAITSL
Trigger: TAAAGAAGTTATTGCCGTCCAGGGCCCACCAGATGG...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTTTTACAGGCTTCAGTGGTTCTaGAAGGACAGCAGGACCTTT +
Preference number: 4 (lower is better)
Translates to: VTLQCWLLFDTRNAIYFYRLQWF*KDSRTF
Trigger: AAAGGTCCTGCTGTCCTTCCAGAACCACTGAAGCCT...GTAAAAATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
3UTR CAA 72 bp CATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTaGCGATGCAGAAGGCAACTGAATCAACATCTTTGG +
Preference number: 4 (lower is better)
Translates to: HATYRTQRVNLT*RCRRQLNQHLW
Trigger: CCAAAGATGTTGATTCAGTTGCCTTCTGCATCGCAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCAAGCTTAGTCTTGAGATaGGGCAAGCTTTTGCCTGTT +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPSLVLR*GKLLPV
Trigger: AACAGGCAAAAGCTTGCCTCATCTCAAGACTAAGCT...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp CTGCTCTATTCTATTCATCTGAAGAGAAAAAGTAGAACTCCAGTTAATAAGAGGCTTCATTTCTCTCTTTaGCTTGGGACTGCCCTGCAG +
Preference number: 4 (lower is better)
Translates to: LLYSIHLKRKSRTPVNKRLHFSL*LGTALQ
Trigger: CTGCAGGGCAGTCCCAAGTCAAAGAGAGAAATGAAG...CCTCTTATTAACTGGAGTTCTACTTTTTCTCTTCAGATGAATAGAATAGAGCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGCCAAGAAGTTGCCTCTaGTTCTTGGGACTGAACTCT +
Preference number: 4 (lower is better)
Translates to: DSTSHKICTECIPATLILPRSCL*FLGLNS
Trigger: AGAGTTCAGTCCCAAGAATCAGAGGCAACTTCTTGG...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR GCA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGTTAAGTGTTCGGAAATaGCTGTCAAAGGCAGGCGCA +
Preference number: 4 (lower is better)
Translates to: DSTSHKICTECIPATLILLSVRK*LSKAGA
Trigger: TGCGCCTGCCTTTGACAGGCATTTCCGAACACTTAA...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGGCTTTTCACAGTATCAACTaGAACATCCCTGATAAAAGG +
Preference number: 4 (lower is better)
Translates to: ESTSLGLGLEQVKSEQKAFHSIN*NIPDKR
Trigger: CCTTTTATCAGGGATGTTGCAGTTGATACTGTGAAA...AGCCTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTTTTACCCAAAGTGTGCAAACTaGCGCAGAAGCTCATCAATC +
Preference number: 4 (lower is better)
Translates to: VTLQCWLLFDTRNAIYFYPKCAN*RRSSSI
Trigger: GATTGATGAGCTTCTGCGGCAGTTTGCACACTTTGG...GTAAAAATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTTTTACAACTTCACCAAAGTGTaGAAACTGCCGCAGAAGCTC +
Preference number: 4 (lower is better)
Translates to: VTLQCWLLFDTRNAIYFYNFTKV*KLPQKL
Trigger: GAGCTTCTGCGGCAGTTTGCACACTTTGGTGAAGTT...GTAAAAATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp CAGCAATCTACTAGAGAGAACAGAGACTCACAGAGATTCTTAGTGTCTGTTTTCTATATTATCTTTCCGTaGTGTTCCAGGGCTTTTGGG +
Preference number: 4 (lower is better)
Translates to: QQSTRENRDSQRFLVSVFYIIFP*CSRAFG
Trigger: CCCAAAAGCCCTGGAACAGCACGGAAAGATAATATA...GAAAACAGACACTAAGAATCTCTGTGAGTCTCTGTTCTCTCTAGTAGATTGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp CTGCTCTATTCTATTCATCTGAAGAGAAAAAGTAGAACTCCAGTTAATAAGAGGCAAAGGCAGGCGCATTaGCTTCAAATCCCCTTGACA +
Preference number: 4 (lower is better)
Translates to: LLYSIHLKRKSRTPVNKRQRQAH*LQIPLT
Trigger: TGTCAAGGGGATTTGAAGCCAATGCGCCTGCCTTTG...CCTCTTATTAACTGGAGTTCTACTTTTTCTCTTCAGATGAATAGAATAGAGCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp ACTGAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGTCGAAGAAGTTATTCTaGATGGTTCTGGTGACAGAT +
Preference number: 4 (lower is better)
Translates to: TESTSLGLGLEQVKSEQKSKKLF*MVLVTD
Trigger: ATCTGTCACCAGAACCATCCAGAATAACTTCTTCGA...CTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTCAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp ACTGAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGACACTCGGATCTTCTTaGGCTTTGAGTATTTGTAGA +
Preference number: 4 (lower is better)
Translates to: TESTSLGLGLEQVKSEQKTLGSS*ALSICR
Trigger: TCTACAAATACTCAAAGCCCAAGAAGATCCGAGTGT...CTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTCAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTTTTACCCCACAGCTTCTGGTTaGTTGTGCTTGCATTCACAA +
Preference number: 4 (lower is better)
Translates to: VTLQCWLLFDTRNAIYFYPTASG*LCLHSQ
Trigger: TTGTGAATGCAAGCACAACCAACCAGAAGCTGTGGG...GTAAAAATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp AGATCTTCAAATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGTGCGACACTTCTCACTaGTGTCATAGTCTTCAGAAA +
Preference number: 4 (lower is better)
Translates to: RSSNGSLFNVGSCLTPEMCDTSH*CHSLQK
Trigger: TTTCTGAAGACTATGACACCAGTGAGAAGTGTCGCA...CATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATTTGAAGATCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGTCACACCATAGTGCTTaGGATGCAAATGCAGAGACT +
Preference number: 4 (lower is better)
Translates to: DSTSHKICTECIPATLILSHHSA*DANAET
Trigger: AGTCTCTGCATTTGCATCTCAAGCACTATGGTGTGA...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCAATCCTCGGATTTGTATaGAGGAAGAGACACAGTCAT +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPILGFV*RKRHSH
Trigger: ATGACTGTGTCTCTTCCTTCATACAAATCCGAGGAT...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp CTGCTCTATTCTATTCATCTGAAGAGAAAAAGTAGAACTCCAGTTAATAAGAGGCAGCTAAATCGCTGTTaGGAGTATTTCCCAGGAGCA +
Preference number: 4 (lower is better)
Translates to: LLYSIHLKRKSRTPVNKRQLNRC*EYFPGA
Trigger: TGCTCCTGGGAAATACTCTCAACAGCGATTTAGCTG...CCTCTTATTAACTGGAGTTCTACTTTTTCTCTTCAGATGAATAGAATAGAGCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGTTACTTCTCTTATCTTaGAACTCCTGGATGCCGGCT +
Preference number: 4 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVLLLLS*NSWMPA
Trigger: AGCCGGCATCCAGGAGTTTCAAGATAAGAGAAGTAA...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TTACTTTCATCTTGGAAACTAGCATTCAGGAGATCTAAATCTTCAGCTGATCTGTTACTTCTCTTATCTTaGAACTCCTGGATGCCGGCT +
Preference number: 4 (lower is better)
Translates to: LLSSWKLAFRRSKSSADLLLLLS*NSWMPA
Trigger: AGCCGGCATCCAGGAGTTTCAAGATAAGAGAAGTAA...CAGATCAGCTGAAGATTTAGATCTCCTGAATGCTAGTTTCCAAGATGAAAGTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231472.2
CDS-3UTR TCA 90 bp ACTGAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGCTTCTTCCAAATGTTTaGTCCAGTCTGGACTTTTTA +
Preference number: 4 (lower is better)
Translates to: TESTSLGLGLEQVKSEQKLLPNV*SSLDFL
Trigger: TAAAAAGTCCAGACTGGATCAAACATTTGGAAGAAG...CTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTCAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGGATGCAGAAGGCAACTaGATCAACATCTTTGGGTCT +
Preference number: 4 (lower is better)
Translates to: DSTSHKICTECIPATLILDAEGN*INIFGS
Trigger: AGACCCAAAGATGTTGATTCAGTTGCCTTCTGCATC...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR GCA 90 bp AGATCTTCAAATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGAGACATTCTTCCTTATaGCTAGTTTCCACTATGAGG +
Preference number: 4 (lower is better)
Translates to: RSSNGSLFNVGSCLTPEMRHSSL*LVSTMR
Trigger: CCTCATAGTGGAAACTAGGCATAAGGAAGAATGTCT...CATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATTTGAAGATCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCATCCCAAAAGTCCGTATaGATCCAGTACTTTGGCATA +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPSQKSV*IQYFGI
Trigger: TATGCCAAAGTACTGGATGCATACGGACTTTTGGGA...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGTTGTGTGCTCTTGCATaGTTCGATGTGCATTCAGAC +
Preference number: 4 (lower is better)
Translates to: DSTSHKICTECIPATLILLCALA*FDVHSD
Trigger: GTCTGAATGCACATCGAAGCATGCAAGAGCACACAA...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCGATGAGGCAAGCTTTTaGCTGTTTATGGGCAGCATA +
Preference number: 4 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFDEASF*LFMGSI
Trigger: TATGCTGCCCATAAACAGGCAAAAGCTTGCCTCATC...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCAAAGCCAAGGAATGCCTaGACACTATTTGTTCTATCC +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPKPRNA*TLFVLS
Trigger: GGATAGAACAAATAGTGTGCAGGCATTCCTTGGCTT...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGCAGTTGCACCTCCCATaGCAGTTTTCACAGTATCAA +
Preference number: 4 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVQLHLP*QFSQYQ
Trigger: TTGATACTGTGAAAACTGGCATGGGAGGTGCAACTG...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGCAGTTGCACCTCCCATaGCAGTTTTCACAGTATCAA +
Preference number: 4 (lower is better)
Translates to: DSTSHKICTECIPATLILQLHLP*QFSQYQ
Trigger: TTGATACTGTGAAAACTGGCATGGGAGGTGCAACTG...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGTTGCTCCCAGAACAATaGAACAGATCCTCGGATTTG +
Preference number: 4 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVLLPEQ*NRSSDL
Trigger: CAAATCCGAGGATCTGTTCCATTGTTCTGGGAGCAA...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGCATTCACAGACCACATaGACCGGAAAACTTCTTGGA +
Preference number: 4 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVHSQTT*TGKLLG
Trigger: TCCAAGAAGTTTTCCGGTCCATGTGGTCTGTGAATG...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGGCTTGTTCTTTAAGACTTTaGAAGATGCTGACTGTAATG +
Preference number: 4 (lower is better)
Translates to: ESTSLGLGLEQVKSEQKACSLRL*KMLTVM
Trigger: CATTACAGTCAGCATCTTCCAAAGTCTTAAAGAACA...AGCCTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp CAAGGTGCCAGGGGTCCATGTATAAAGAATTTTACTTTCATCTTGGAAACTAGCACACTCGGATCTTCTTaGGCTTTGAGTATTTGTAGA +
Preference number: 4 (lower is better)
Translates to: QGARGPCIKNFTFILETSTLGSS*ALSICR
Trigger: TCTACAAATACTCAAAGCCCAAGAAGATCCGAGTGT...GCTAGTTTCCAAGATGAAAGTAAAATTCTTTATACATGGACCCCTGGCACCTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231472.2
CDS-3UTR TCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCAAGCATCAACTCGCAATaGTATAAACTCAGTGGAAGT +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPSINSQ*YKLSGS
Trigger: ACTTCCACTGAGTTTATATCATTGCGAGTTGATGCT...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp AATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTTGCAAATGCAGAGACTaGTTCCAGAAAAACCTATTG +
Preference number: 4 (lower is better)
Translates to: NGSLFNVGSCLTPEMPFICKCRD*FQKNLL
Trigger: CAATAGGTTTTTCTGGAATCAGTCTCTGCATTTGCA...AATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp CTGCTCTATTCTATTCATCTGAAGAGAAAAAGTAGAACTCCAGTTAATAAGAGGTTACTTCTCTTATCTTaGAACTCCTGGATGCCGGCT +
Preference number: 4 (lower is better)
Translates to: LLYSIHLKRKSRTPVNKRLLLLS*NSWMPA
Trigger: AGCCGGCATCCAGGAGTTTCAAGATAAGAGAAGTAA...CCTCTTATTAACTGGAGTTCTACTTTTTCTCTTCAGATGAATAGAATAGAGCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCAAGACATTCTTCCTTATaGCTAGTTTCCACTATGAGG +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPRHSSL*LVSTMR
Trigger: CCTCATAGTGGAAACTAGGCATAAGGAAGAATGTCT...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCTCCCAAAAGTCCGTATaGATCCAGTACTTTGGCATA +
Preference number: 4 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFSQKSV*IQYFGI
Trigger: TATGCCAAAGTACTGGATGCATACGGACTTTTGGGA...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGACTGTAGACTGGCTCTaGAGATCAAAATTGTCCTCA +
Preference number: 4 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVTVDWL*RSKLSS
Trigger: TGAGGACAATTTTGATCTGCAGAGCCAGTCTACAGT...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR CCA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCCTGTCTCTACAAAGTTaGCAACATGACCATCATCGT +
Preference number: 4 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFLSLQS*QHDHHR
Trigger: ACGATGATGGTCATGTTGCCAACTTTGTAGAGACAG...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGAGCATCAACTCGCAATaGTATAAACTCAGTGGAAGT +
Preference number: 4 (lower is better)
Translates to: DSTSHKICTECIPATLILSINSQ*YKLSGS
Trigger: ACTTCCACTGAGTTTATATCATTGCGAGTTGATGCT...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCTGCAAATGCAGAGACTaGTTCCAGAAAAACCTATTG +
Preference number: 4 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFCKCRD*FQKNLL
Trigger: CAATAGGTTTTTCTGGAATCAGTCTCTGCATTTGCA...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCATCTGGACTTGTGGTTTaGGAATACTGTGTAGTTTTT +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPSGLVV*EYCVVF
Trigger: AAAAACTACACAGTATTCTCAAACCACAAGTCCAGA...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCACTTCTTCCAAATGTTTaGTCCAGTCTGGACTTTTTA +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPLLPNV*SSLDFL
Trigger: TAAAAAGTCCAGACTGGATCAAACATTTGGAAGAAG...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCATCTAAAGATCTGTCCTaGATTTTTCTGGTTGATGAG +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPSKDLS*IFLVDE
Trigger: CTCATCAACCAGAAAAATGCAGGACAGATCTTTAGA...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGACACTCGGATCTTCTTaGGCTTTGAGTATTTGTAGA +
Preference number: 4 (lower is better)
Translates to: DSTSHKICTECIPATLILTLGSS*ALSICR
Trigger: TCTACAAATACTCAAAGCCCAAGAAGATCCGAGTGT...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTTTTACTCTGGACTTGTGGTTTaGGAATACTGTGTAGTTTTT +
Preference number: 4 (lower is better)
Translates to: VTLQCWLLFDTRNAIYFYSGLVV*EYCVVF
Trigger: AAAAACTACACAGTATTCTCAAACCACAAGTCCAGA...GTAAAAATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR TCA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCCTTCTTCCAAATGTTTaGTCCAGTCTGGACTTTTTA +
Preference number: 4 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFLLPNV*SSLDFL
Trigger: TAAAAAGTCCAGACTGGATCAAACATTTGGAAGAAG...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CCA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCATGTTCTTTAAGACTTTaGAAGATGCTGACTGTAATG +
Preference number: 4 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPCSLRL*KMLTVM
Trigger: CATTACAGTCAGCATCTTCCAAAGTCTTAAAGAACA...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR GCA 90 bp CTGCTCTATTCTATTCATCTGAAGAGAAAAAGTAGAACTCCAGTTAATAAGAGGTTTCACAGTATCAACTaGAACATCCCTGATAAAAGG +
Preference number: 4 (lower is better)
Translates to: LLYSIHLKRKSRTPVNKRFHSIN*NIPDKR
Trigger: CCTTTTATCAGGGATGTTGCAGTTGATACTGTGAAA...CCTCTTATTAACTGGAGTTCTACTTTTTCTCTTCAGATGAATAGAATAGAGCAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS CCA 90 bp CAGGACGTGCCGGAGGAGCGACTGGGCGGGGAGGGGGTGGTCTCTTaGGCTCTAGAGTCTGGGAAGAATCCTTCTGGGCCGCTGGCTGAG +
Preference number: 5 (lower is better)
Translates to: QDVPEERLGGEGVVS*ALESGKNPSGPLAE
Trigger: CTCAGCCAGCGGCCCAGAAGGATTCTTCCCAGACTCTAGAGCCCAAGAGACCACCCCCTCCCCGCCCAGTCGCTCCTCCGGCACGTCCTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000125032.3
ENSMUST00000170853.8
ENSMUST00000231524.2
CDS CCA 90 bp TACCCGAGCCTGGCTCTGAGGGGCGCTGATCACTCCAGCACGAGCTaGAATTGTCGGTCTAGCCGCACCGTATCCAGCGGGTCCTGGGCC +
Preference number: 5 (lower is better)
Translates to: YPSLALRGADHSSTS*NCRSSRTVSSGSWA
Trigger: GGCCCAGGACCCGCTGGATACGGTGCGGCTAGACCGACAATTCCAGCTCGTGCTGGAGTGATCAGCGCCCCTCAGAGCCAGGCTCGGGTA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000125032.3
ENSMUST00000154276.8
ENSMUST00000170853.8
ENSMUST00000231524.2
CDS CCA 90 bp ACGAGCTGGAATTGTCGGTCTAGCCGCACCGTATCCAGCGGGTCCTaGGCCTGCAAGTCCGGCTTGAGGGGAAGGCTGATTACGCCCTAT +
Preference number: 5 (lower is better)
Translates to: TSWNCRSSRTVSSGS*ACKSGLRGRLITPY
Trigger: ATAGGGCGTAATCAGCCTTCCCCTCAAGCCGGACTTGCAGGCCCAGGACCCGCTGGATACGGTGCGGCTAGACCGACAATTCCAGCTCGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000125032.3
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS GCA 90 bp TGGGGGACTGGCAGGGACTGGTCCGGGGTGAAGAACTTGGAGAAGTaGCCAGGCCAGAACTTGAGGACGGCTGCAGATGCTGAGGAAGAA +
Preference number: 5 (lower is better)
Translates to: WGTGRDWSGVKNLEK*PGQNLRTAADAEEE
Trigger: TTCTTCCTCAGCATCTGCAGCCGTCCTCAAGTTCTGGCCTGGGCACTTCTCCAAGTTCTTCACCCCGGACCAGTCCCTGCCAGTCCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000125032.3
ENSMUST00000170853.8
ENSMUST00000231524.2
CDS CCA 90 bp CACCCACCAGCTGCTCCGAGGCCAGCAGGACATACTTGTTGTCCCTaGAGATGGTCTTCTGCAGCTCCACTGCCCACAGCTTCTGGTTGG +
Preference number: 5 (lower is better)
Translates to: HPPAAPRPAGHTCCP*RWSSAAPLPTASGW
Trigger: CCAACCAGAAGCTGTGGGCAGTGGAGCTGCAGAAGACCATCTCCAGGGACAACAAGTATGTCCTGCTGGCCTCGGAGCAGCTGGTGGGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CCA 90 bp CCAGCTGCTCCGAGGCCAGCAGGACATACTTGTTGTCCCTGGAGATaGTCTTCTGCAGCTCCACTGCCCACAGCTTCTGGTTGGTTGTGC +
Preference number: 5 (lower is better)
Translates to: PAAPRPAGHTCCPWR*SSAAPLPTASGWLC
Trigger: GCACAACCAACCAGAAGCTGTGGGCAGTGGAGCTGCAGAAGACCATCTCCAGGGACAACAAGTATGTCCTGCTGGCCTCGGAGCAGCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GAGGTGGTGGTGGTGGTGGCCTTCTGGCTGGCAACACACAGAAAGAAACGCTCGATTGCAACGGCGCCCTaGTTTCCAGTTGCACCTCCC +
Preference number: 5 (lower is better)
Translates to: EVVVVVAFWLATHRKKRSIATAP*FPVAPP
Trigger: GGGAGGTGCAACTGGAAACAAGGGCGCCGTTGCAAT...CGAGCGTTTCTTTCTGTGTGTTGCCAGCCAGAAGGCCACCACCACCACCACCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS TCA 90 bp AGTGTCAACTGGAGAGCCCTGCGAACTTGGAGGTCCTGGAGTTCTTaGCGGTGCTCGGCTAGGTCTGATGGGAAGAGAAGGGGCGGAGTA +
Preference number: 5 (lower is better)
Translates to: SVNWRALRTWRSWSS*RCSARSDGKRRGGV
Trigger: TACTCCGCCCCTTCTCTTCCCATCAGACCTAGCCGAGCACCGTCAAGAACTCCAGGACCTCCAAGTTCGCAGGGCTCTCCAGTTGACACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000125032.3
ENSMUST00000170853.8
ENSMUST00000231524.2
CDS GCA 90 bp TGGAATTGTCGGTCTAGCCGCACCGTATCCAGCGGGTCCTGGGCCTaGAAGTCCGGCTTGAGGGGAAGGCTGATTACGCCCTATATTATC +
Preference number: 5 (lower is better)
Translates to: WNCRSSRTVSSGSWA*KSGLRGRLITPYII
Trigger: GATAATATAGGGCGTAATCAGCCTTCCCCTCAAGCCGGACTTGCAGGCCCAGGACCCGCTGGATACGGTGCGGCTAGACCGACAATTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000125032.3
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp AGGGCAGGCTGGGAAACGGGTTTGCAGAACTGCCCATACTCTCCTGTGACTTGCATTGCAACGGCGCCCTaGTTTCCAGTTGCACCTCCC +
Preference number: 5 (lower is better)
Translates to: RAGWETGLQNCPYSPVTCIATAP*FPVAPP
Trigger: GGGAGGTGCAACTGGAAACAAGGGCGCCGTTGCAAT...GCAAGTCACAGGAGAGTATGGGCAGTTCTGCAAACCCGTTTCCCAGCCTGCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS GCA 90 bp GCGTGCTGTGGTCTGATAAAGACAAACAGGCAGACACCCACCAGCTaGTCCGAGGCCAGCAGGACATACTTGTTGTCCCTGGAGATGGTC +
Preference number: 5 (lower is better)
Translates to: ACCGLIKTNRQTPTS*SEASRTYLLSLEMV
Trigger: GACCATCTCCAGGGACAACAAGTATGTCCTGCTGGCCTCGGAGCAGCTGGTGGGTGTCTGCCTGTTTGTCTTTATCAGACCACAGCACGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGGTGAGCGTCTGGTTCTaGAACGCTATGCTGCGGAAC +
Preference number: 5 (lower is better)
Translates to: LCRHYSGSHLRESLLRAAVSVWF*NAMLRN
Trigger: GTTCCGCAGCATAGCGTTCAAGAACCAGACGCTCAC...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS GCA 90 bp TCCGAGGCCAGCAGGACATACTTGTTGTCCCTGGAGATGGTCTTCTaGAGCTCCACTGCCCACAGCTTCTGGTTGGTTGTGCTTGCATTC +
Preference number: 5 (lower is better)
Translates to: SEASRTYLLSLEMVF*SSTAHSFWLVVLAF
Trigger: GAATGCAAGCACAACCAACCAGAAGCTGTGGGCAGTGGAGCTGCAGAAGACCATCTCCAGGGACAACAAGTATGTCCTGCTGGCCTCGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGGCTGTTCCAGGGCTTTaGGGTGCTTCTATCTCTCTC +
Preference number: 5 (lower is better)
Translates to: LCRHYSGSHLRESLLRAAAVPGL*GASISL
Trigger: GAGAGAGATAGAAGCACCCAAAAGCCCTGGAACAGC...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS CCA 90 bp CCCTGGAGATGGTCTTCTGCAGCTCCACTGCCCACAGCTTCTGGTTaGTTGTGCTTGCATTCACAATGTTCCCAGCATTCAGCTCCACCA +
Preference number: 5 (lower is better)
Translates to: PWRWSSAAPLPTASG*LCLHSQCSQHSAPP
Trigger: TGGTGGAGCTGAATGCTGGGAACATTGTGAATGCAAGCACAACCAACCAGAAGCTGTGGGCAGTGGAGCTGCAGAAGACCATCTCCAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTTGGCTTCAAATCCCCTaGACATACGAACACGATGGG +
Preference number: 5 (lower is better)
Translates to: YSGSHLRESLLRAAIHTAWLQIP*TYEHDG
Trigger: CCCATCGTGTTCGTATGTCAAGGGGATTTGAAGCCA...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCGCCTGCAAGTCCGGCTaGAGGGGAAGGCTGATTACG +
Preference number: 5 (lower is better)
Translates to: DFLTRQSYCSADITVVHTACKSG*RGRLIT
Trigger: CGTAATCAGCCTTCCCCTCAAGCCGGACTTGCAGGC...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTATACTCTCCTGTGACTaGCTTTCCTCTGGACCTGGA +
Preference number: 5 (lower is better)
Translates to: YSGSHLRESLLRAAIHTAILSCD*LSSGPG
Trigger: TCCAGGTCCAGAGGAAAGCAAGTCACAGGAGAGTAT...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS TCA 90 bp TCGGAAATGCCTGTCAAAGGCAGGCGCATTGGCTTCAAATCCCCTTaGCATACGAACACGATGGGATCCCACTTGCAACCCTGGTTGCTC +
Preference number: 5 (lower is better)
Translates to: SEMPVKGRRIGFKSP*HTNTMGSHLQPWLL
Trigger: GAGCAACCAGGGTTGCAAGTGGGATCCCATCGTGTTCGTATGTCAAGGGGATTTGAAGCCAATGCGCCTGCCTTTGACAGGCATTTCCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CCA 90 bp TTGTCCCTGGAGATGGTCTTCTGCAGCTCCACTGCCCACAGCTTCTaGTTGGTTGTGCTTGCATTCACAATGTTCCCAGCATTCAGCTCC +
Preference number: 5 (lower is better)
Translates to: LSLEMVFCSSTAHSF*LVVLAFTMFPAFSS
Trigger: GGAGCTGAATGCTGGGAACATTGTGAATGCAAGCACAACCAACCAGAAGCTGTGGGCAGTGGAGCTGCAGAAGACCATCTCCAGGGACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GCTTTCCTCTGGACCTGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGCACTTGCAACCCTGGTaGCTCCCAGAACAATGGAAC +
Preference number: 5 (lower is better)
Translates to: AFLWTWRPGWHATYRTQRHLQPW*LPEQWN
Trigger: GTTCCATTGTTCTGGGAGCAACCAGGGTTGCAAGTG...CCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCAGGTCCAGAGGAAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGACGATGGGATCCCACTaGCAACCCTGGTTGCTCCCA +
Preference number: 5 (lower is better)
Translates to: STAESRAPGNWQTERYGRTMGSH*QPWLLP
Trigger: TGGGAGCAACCAGGGTTGCAAGTGGGATCCCATCGT...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GCTTTCCTCTGGACCTGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGAGAAGCGCTCGGGCTTaGTCAGCTAAATCGCTGTTG +
Preference number: 5 (lower is better)
Translates to: AFLWTWRPGWHATYRTQRRSARA*SAKSLL
Trigger: CAACAGCGATTTAGCTGACAAAGCCCGAGCGCTTCT...CCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCAGGTCCAGAGGAAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp AGGGCAGGCTGGGAAACGGGTTTGCAGAACTGCCCATACTCTCCTGTGACTTGCAAAACCTATTGTCGGTaGTGTGCTCTTGCATGCTTC +
Preference number: 5 (lower is better)
Translates to: RAGWETGLQNCPYSPVTCKTYCR*CALACF
Trigger: GAAGCATGCAAGAGCACACAACCGACAATAGGTTTT...GCAAGTCACAGGAGAGTATGGGCAGTTCTGCAAACCCGTTTCCCAGCCTGCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGAAAACCTATTGTCGGTaGTGTGCTCTTGCATGCTTC +
Preference number: 5 (lower is better)
Translates to: LCRHYSGSHLRESLLRAAKTYCR*CALACF
Trigger: GAAGCATGCAAGAGCACACAACCGACAATAGGTTTT...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGTTGGTTCCCCGGACATaGAACCTTGTCCCAGCTCGT +
Preference number: 5 (lower is better)
Translates to: STAESRAPGNWQTERYGRLVPRT*NLVPAR
Trigger: ACGAGCTGGGACAAGGTTCAATGTCCGGGGAACCAA...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGGCCTGCAAGTCCGGCTaGAGGGGAAGGCTGATTACG +
Preference number: 5 (lower is better)
Translates to: WRPGWHATYRTQRVNLTLACKSG*RGRLIT
Trigger: CGTAATCAGCCTTCCCCTCAAGCCGGACTTGCAGGC...CAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGGTTTCCAAATTTGGTaGGGGGCCAGAGGGAGGCAT +
Preference number: 5 (lower is better)
Translates to: STAESRAPGNWQTERYGRGFQIW*GARGRH
Trigger: ATGCCTCCCTCTGGCCCCCAACCAAATTTGGAAACC...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGCTTCAATGTTGGCTCTaGTTTGACACCAGAAATGCC +
Preference number: 5 (lower is better)
Translates to: LCRHYSGSHLRESLLRAALQCWL*FDTRNA
Trigger: GGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAG...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR CAA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCGACCTGGAGGCCTGGTaGGCATGCAACTTACAGAAC +
Preference number: 5 (lower is better)
Translates to: DFLTRQSYCSADITVVHTDLEAW*ACNLQN
Trigger: GTTCTGTAAGTTGCATGCCAACCAGGCCTCCAGGTC...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR CAA 90 bp TACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGATCCACACTGCTACCCATCCTTTGGGGTaGCTTGTTTTTACTGTAGAC +
Preference number: 5 (lower is better)
Translates to: YSGSHLRESLLRAAIHTATHPLG*LVFTVD
Trigger: GTCTACAGTAAAAACAAGCAACCCCAAAGGATGGGT...AGCAGTGTGGATCGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS TCA 90 bp CTTCCTGCTTGGAGCTGTCGAAGAAGTTATTCTGGATGGTTCTGGTaGCAGATCGCGCACCATCTTTTAACTTGGCCTTCCCTTCCAGGG +
Preference number: 5 (lower is better)
Translates to: LPAWSCRRSYSGWFW*QIAHHLLTWPSLPG
Trigger: CCCTGGAAGGGAAGGCCAAGTTAAAAGATGGTGCGCGATCTGTCACCAGAACCATCCAGAATAACTTCTTCGACAGCTCCAAGCAGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS GCA 90 bp AGCACAGCCACAGCCCCAGACTCGAACATGAGACATTCTTCCTTATaGCTAGTTTCCACTATGAGGCTGAACGGTGGGGGATCCAATTTG +
Preference number: 5 (lower is better)
Translates to: STATAPDSNMRHSSL*LVSTMRLNGGGSNL
Trigger: CAAATTGGATCCCCCACCGTTCAGCCTCATAGTGGAAACTAGGCATAAGGAAGAATGTCTCATGTTCGAGTCTGGGGCTGTGGCTGTGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS GCA 90 bp TCCGGCTTGAGGGGAAGGCTGATTACGCCCTATATTATCTTTCCGTaGTGTTCCAGGGCTTTTGGGTGCTTCTATCTCTCTCCTAGCAAC +
Preference number: 5 (lower is better)
Translates to: SGLRGRLITPYIIFP*CSRAFGCFYLSPSN
Trigger: GTTGCTAGGAGAGAGATAGAAGCACCCAAAAGCCCTGGAACAGCACGGAAAGATAATATAGGGCGTAATCAGCCTTCCCCTCAAGCCGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGAACAGATCCTCGGATTaGTATGAAGGAAGAGACACA +
Preference number: 5 (lower is better)
Translates to: LCRHYSGSHLRESLLRAANRSSD*YEGRDT
Trigger: TGTGTCTCTTCCTTCATACAAATCCGAGGATCTGTT...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GAGGTGGTGGTGGTGGTGGCCTTCTGGCTGGCAACACACAGAAAGAAACGCTCGGGATCTTCTTGGGCTTaGAGTATTTGTAGAAGTTCT +
Preference number: 5 (lower is better)
Translates to: EVVVVVAFWLATHRKKRSGSSWA*SICRSS
Trigger: AGAACTTCTACAAATACTCAAAGCCCAAGAAGATCC...CGAGCGTTTCTTTCTGTGTGTTGCCAGCCAGAAGGCCACCACCACCACCACCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TCAGCTGATCTGTCAAAAGGCCACTTCCTCCTTCTCCAGAGGACACGGTCTGTCCTTACTTCTCTTATCTaGAAACTCCTGGATGCCGGC +
Preference number: 5 (lower is better)
Translates to: SADLSKGHFLLLQRTRSVLTSLI*KLLDAG
Trigger: GCCGGCATCCAGGAGTTTCAAGATAAGAGAAGTAAG...GACAGACCGTGTCCTCTGGAGAAGGAGGAAGTGGCCTTTTGACAGATCAGCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231472.2
CDS-3UTR CAA 90 bp GCTTTCCTCTGGACCTGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGATTTCTCTCTTTGACTaGGGACTGCCCTGCAGCAAA +
Preference number: 5 (lower is better)
Translates to: AFLWTWRPGWHATYRTQRISLFD*GLPCSK
Trigger: TTTGCTGCAGGGCAGTCCCAAGTCAAAGAGAGAAAT...CCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCAGGTCCAGAGGAAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS TCA 90 bp CTTCCTGCTTGGAGCTGTCGAAGAAGTTATTCTGGATGGTTCTGGTaGCAGATCGCGCACCATCTTTTAACTTTCCAGCCTTGGCCTTCC +
Preference number: 5 (lower is better)
Translates to: LPAWSCRRSYSGWFW*QIAHHLLTFQPWPS
Trigger: GGAAGGCCAAGGCTGGAAAGTTAAAAGATGGTGCGCGATCTGTCACCAGAACCATCCAGAATAACTTCTTCGACAGCTCCAAGCAGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130813.3
CDS GCA 90 bp GGTCTTCTGCAGCTCCACTGCCCACAGCTTCTGGTTGGTTGTGCTTaGATTCACAATGTTCCCAGCATTCAGCTCCACCATTTCTTCAAA +
Preference number: 5 (lower is better)
Translates to: GLLQLHCPQLLVGCA*IHNVPSIQLHHFFK
Trigger: TTTGAAGAAATGGTGGAGCTGAATGCTGGGAACATTGTGAATGCAAGCACAACCAACCAGAAGCTGTGGGCAGTGGAGCTGCAGAAGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS GCA 90 bp AGATGGTCTTCTGCAGCTCCACTGCCCACAGCTTCTGGTTGGTTGTaGTTGCATTCACAATGTTCCCAGCATTCAGCTCCACCATTTCTT +
Preference number: 5 (lower is better)
Translates to: RWSSAAPLPTASGWL*LHSQCSQHSAPPFL
Trigger: AAGAAATGGTGGAGCTGAATGCTGGGAACATTGTGAATGCAAGCACAACCAACCAGAAGCTGTGGGCAGTGGAGCTGCAGAAGACCATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GAGGACACGGTCTGTCCAAGCAGGGGTGCGACACTTCTCACTGGTGTCATAGTCGGATCTTCTTGGGCTTaGAGTATTTGTAGAAGTTCT +
Preference number: 5 (lower is better)
Translates to: EDTVCPSRGATLLTGVIVGSSWA*SICRSS
Trigger: AGAACTTCTACAAATACTCAAAGCCCAAGAAGATCC...GACTATGACACCAGTGAGAAGTGTCGCACCCCTGCTTGGACAGACCGTGTCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231472.2
CDS-3UTR CAA 90 bp GAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGGCAAAGGGCACAGCTTCTGGTTGGTaGTGCTTGCATTCACAATGT +
Preference number: 5 (lower is better)
Translates to: ESRAPGNWQTERYGRAKGTASGW*CLHSQC
Trigger: ACATTGTGAATGCAAGCACAACCAACCAGAAGCTGT...GCCCTTTGCCCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp ACGGCCAACTGTAAATGCCCAGAGAAAGGCATCATAGAGGTACAGAGGAGGAAGAGCAGGACATACTTGTaGTCCCTGGAGATGGTCTTC +
Preference number: 5 (lower is better)
Translates to: TANCKCPEKGIIEVQRRKSRTYL*SLEMVF
Trigger: GAAGACCATCTCCAGGGACAACAAGTATGTCCTGCT...CTTCCTCCTCTGTACCTCTATGATGCCTTTCTCTGGGCATTTACAGTTGGCCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp AGGGCAGGCTGGGAAACGGGTTTGCAGAACTGCCCATACTCTCCTGTGACTTGCCAGAGAATCCCAGTTTaGTTGTCTTATGAGCTCTTT +
Preference number: 5 (lower is better)
Translates to: RAGWETGLQNCPYSPVTCQRIPV*LSYELF
Trigger: AAAGAGCTCATAAGACAACAAAACTGGGATTCTCTG...GCAAGTCACAGGAGAGTATGGGCAGTTCTGCAAACCCGTTTCCCAGCCTGCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TGCCTTTCACAACAATCTCACCAGAACTCTGGAAGCTCTTTGGTAAGTATCCATGCCTGCAAGTCCGGCTaGAGGGGAAGGCTGATTACG +
Preference number: 5 (lower is better)
Translates to: CLSQQSHQNSGSSLVSIHACKSG*RGRLIT
Trigger: CGTAATCAGCCTTCCCCTCAAGCCGGACTTGCAGGC...ATGGATACTTACCAAAGAGCTTCCAGAGTTCTGGTGAGATTGTTGTGAAAGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS GCA 90 bp TCGCTGTTGAGAGTATTTCCCAGGAGCAGGACATCAATGGCTTCCTaGTTGGAGCTGTCGAAGAAGTTATTCTGGATGGTTCTGGTGACA +
Preference number: 5 (lower is better)
Translates to: SLLRVFPRSRTSMAS*LELSKKLFWMVLVT
Trigger: TGTCACCAGAACCATCCAGAATAACTTCTTCGACAGCTCCAAGCAGGAAGCCATTGATGTCCTGCTCCTGGGAAATACTCTCAACAGCGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS GCA 90 bp CGTGCTATTTCTACAAAATCTTCATTTCTCTCTTTGACTTGGGACTaGCCTGCAGCAAAGTGGCTGCAGACGAAGCAAAGGCTGGTGGTG +
Preference number: 5 (lower is better)
Translates to: RAISTKSSFLSLTWD*PAAKWLQTKQRLVV
Trigger: CACCACCAGCCTTTGCTTCGTCTGCAGCCACTTTGCTGCAGGGCAGTCCCAAGTCAAAGAGAGAAATGAAGATTTTGTAGAAATAGCACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TGGAGGCCTGGTTGGCATGCAACTTACAGAACTCAAAGGGTTAACTTGACTTTGCACTTGCAACCCTGGTaGCTCCCAGAACAATGGAAC +
Preference number: 5 (lower is better)
Translates to: WRPGWHATYRTQRVNLTLHLQPW*LPEQWN
Trigger: GTTCCATTGTTCTGGGAGCAACCAGGGTTGCAAGTG...CAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp CTCTGCAGACATTACAGTGGTTCACACCTGAGGGAGTCACTGCTCAGGGCTGCGTCCTCCTTTAACCATTaGATGATAGTCAAAAGACAC +
Preference number: 5 (lower is better)
Translates to: LCRHYSGSHLRESLLRAASSFNH*MIVKRH
Trigger: GTGTCTTTTGACTATCATCAAATGGTTAAAGGAGGA...CGCAGCCCTGAGCAGTGACTCCCTCAGGTGTGAACCACTGTAATGTCTGCAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCTCAGCTAAATCGCTGTaGAGAGTATTTCCCAGGAGC +
Preference number: 5 (lower is better)
Translates to: DFLTRQSYCSADITVVHTSAKSL*RVFPRS
Trigger: GCTCCTGGGAAATACTCTCAACAGCGATTTAGCTGA...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp ACGGCCAACTGTAAATGCCCAGAGAAAGGCATCATAGAGGTACAGAGGAGGAAGCTTACTTCTCTTATCTaGAAACTCCTGGATGCCGGC +
Preference number: 5 (lower is better)
Translates to: TANCKCPEKGIIEVQRRKLTSLI*KLLDAG
Trigger: GCCGGCATCCAGGAGTTTCAAGATAAGAGAAGTAAG...CTTCCTCCTCTGTACCTCTATGATGCCTTTCTCTGGGCATTTACAGTTGGCCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGCTTACTTCTCTTATCTaGAAACTCCTGGATGCCGGC +
Preference number: 5 (lower is better)
Translates to: STAESRAPGNWQTERYGRLTSLI*KLLDAG
Trigger: GCCGGCATCCAGGAGTTTCAAGATAAGAGAAGTAAG...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCAAGCAGGACATACTTGTaGTCCCTGGAGATGGTCTTC +
Preference number: 5 (lower is better)
Translates to: FAKVLCPNRSALGEKCDASRTYL*SLEMVF
Trigger: GAAGACCATCTCCAGGGACAACAAGTATGTCCTGCT...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TCATGGATGTGCTATGTAGCCTCTTACATGGGAGAACATACACTGGACATGTTCGGTTTCCAAATTTGGTaGGGGGCCAGAGGGAGGCAT +
Preference number: 5 (lower is better)
Translates to: SWMCYVASYMGEHTLDMFGFQIW*GARGRH
Trigger: ATGCCTCCCTCTGGCCCCCAACCAAATTTGGAAACC...GAACATGTCCAGTGTATGTTCTCCCATGTAAGAGGCTACATAGCACATCCATGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGGCTGGTTTCCAAATTTGGTaGGGGGCCAGAGGGAGGCAT +
Preference number: 5 (lower is better)
Translates to: ESTSLGLGLEQVKSEQKAGFQIW*GARGRH
Trigger: ATGCCTCCCTCTGGCCCCCAACCAAATTTGGAAACC...AGCCTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCATGGAGAGCCAAGAAGTaGCCTCTGATTCTTGGGACT +
Preference number: 5 (lower is better)
Translates to: FAKVLCPNRSALGEKCDAWRAKK*PLILGT
Trigger: AGTCCCAAGAATCAGAGGCAACTTCTTGGCTCTCCA...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR CAA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGCTCTGCAGATCAAAATaGTCCTCAAAGCCACCAAGC +
Preference number: 5 (lower is better)
Translates to: STAESRAPGNWQTERYGRLCRSK*SSKPPS
Trigger: GCTTGGTGGCTTTGAGGACAATTTTGATCTGCAGAG...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR CAA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTCACTTGCAACCCTGGTaGCTCCCAGAACAATGGAAC +
Preference number: 5 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLHLQPW*LPEQWN
Trigger: GTTCCATTGTTCTGGGAGCAACCAGGGTTGCAAGTG...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGACAATCCAAGCAGTTaGTTCGAACTGTACCACTCT +
Preference number: 5 (lower is better)
Translates to: AATRLPDKAELLLCRHYSDNPSS*FELYHS
Trigger: AGAGTGGTACAGTTCGAACAAACTGCTTGGATTGTC...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TCATGGATGTGCTATGTAGCCTCTTACATGGGAGAACATACACTGGACATGTTCAGAAGCGCTCGGGCTTaGTCAGCTAAATCGCTGTTG +
Preference number: 5 (lower is better)
Translates to: SWMCYVASYMGEHTLDMFRSARA*SAKSLL
Trigger: CAACAGCGATTTAGCTGACAAAGCCCGAGCGCTTCT...GAACATGTCCAGTGTATGTTCTCCCATGTAAGAGGCTACATAGCACATCCATGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCACAGCTTCTGGTTGGTaGTGCTTGCATTCACAATGT +
Preference number: 5 (lower is better)
Translates to: DFLTRQSYCSADITVVHTTASGW*CLHSQC
Trigger: ACATTGTGAATGCAAGCACAACCAACCAGAAGCTGT...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCTCTTGTGCAGAACTTTaGATTGAGACCAGCACTGTG +
Preference number: 5 (lower is better)
Translates to: DFLTRQSYCSADITVVHTSCAEL*IETSTV
Trigger: CACAGTGCTGGTCTCAATCAAAAGTTCTGCACAAGA...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TCAACAGCTGAAAGCAGAGCTCCAGGCAACTGGCAAACAGAAAGGTATGGAAGGTCTTGTGCAGAACTTTaGATTGAGACCAGCACTGTG +
Preference number: 5 (lower is better)
Translates to: STAESRAPGNWQTERYGRSCAEL*IETSTV
Trigger: CACAGTGCTGGTCTCAATCAAAAGTTCTGCACAAGA...CCTTCCATACCTTTCTGTTTGCCAGTTGCCTGGAGCTCTGCTTTCAGCTGTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCAGCCTGCAAGTCCGGCTaGAGGGGAAGGCTGATTACG +
Preference number: 5 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPACKSG*RGRLIT
Trigger: CGTAATCAGCCTTCCCCTCAAGCCGGACTTGCAGGC...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS GCA 90 bp AGAGCTTCCAGCTGCTTAGCGAGCATCTCTAAGCCAAGGAATGCCTaGACACTATTTGTTCTATCCAGACAATCCAAGCAGTTTGTTCGA +
Preference number: 5 (lower is better)
Translates to: RASSCLASISKPRNA*TLFVLSRQSKQFVR
Trigger: TCGAACAAACTGCTTGGATTGTCTGGATAGAACAAATAGTGTGCAGGCATTCCTTGGCTTAGAGATGCTCGCTAAGCAGCTGGAAGCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CCA 90 bp GAGACATTCTTCCTTATGCCTAGTTTCCACTATGAGGCTGAACGGTaGGGGATCCAATTTGTGGTAGATTCGAAATCCTTTGCTGAACGC +
Preference number: 5 (lower is better)
Translates to: ETFFLMPSFHYEAER*GIQFVVDSKSFAER
Trigger: GCGTTCAGCAAAGGATTTCGAATCTACCACAAATTGGATCCCCCACCGTTCAGCCTCATAGTGGAAACTAGGCATAAGGAAGAATGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp AATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTACGATGGGATCCCACTaGCAACCCTGGTTGCTCCCA +
Preference number: 5 (lower is better)
Translates to: NGSLFNVGSCLTPEMPFITMGSH*QPWLLP
Trigger: TGGGAGCAACCAGGGTTGCAAGTGGGATCCCATCGT...AATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TGCCTTTCACAACAATCTCACCAGAACTCTGGAAGCTCTTTGGTAAGTATCCATAGAAGCGCTCGGGCTTaGTCAGCTAAATCGCTGTTG +
Preference number: 5 (lower is better)
Translates to: CLSQQSHQNSGSSLVSIHRSARA*SAKSLL
Trigger: CAACAGCGATTTAGCTGACAAAGCCCGAGCGCTTCT...ATGGATACTTACCAAAGAGCTTCCAGAGTTCTGGTGAGATTGTTGTGAAAGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp AGATCTTCAAATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGGTGAGCGTCTGGTTCTaGAACGCTATGCTGCGGAAC +
Preference number: 5 (lower is better)
Translates to: RSSNGSLFNVGSCLTPEMVSVWF*NAMLRN
Trigger: GTTCCGCAGCATAGCGTTCAAGAACCAGACGCTCAC...CATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATTTGAAGATCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TCTTGGAAACTAGCATTCAGGAGATCTAAATCTTCAGCTGATCTGTCAAAAGGCGTGAGCGTCTGGTTCTaGAACGCTATGCTGCGGAAC +
Preference number: 5 (lower is better)
Translates to: SWKLAFRRSKSSADLSKGVSVWF*NAMLRN
Trigger: GTTCCGCAGCATAGCGTTCAAGAACCAGACGCTCAC...GCCTTTTGACAGATCAGCTGAAGATTTAGATCTCCTGAATGCTAGTTTCCAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231472.2
CDS-3UTR CAA 90 bp GTCAAAGGTTACCCATCCTTTGGGGTTGCTTGTTTTTACTGTAGACTGGCTCTGTCTTCATTTCTCTCTTaGACTTGGGACTGCCCTGCA +
Preference number: 5 (lower is better)
Translates to: VKGYPSFGVACFYCRLALSSFLS*TWDCPA
Trigger: TGCAGGGCAGTCCCAAGTCAAAGAGAGAAATGAAGA...CAGAGCCAGTCTACAGTAAAAACAAGCAACCCCAAAGGATGGGTAACCTTTGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp AGATCTTCAAATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGGGTTTCCAAATTTGGTaGGGGGCCAGAGGGAGGCAT +
Preference number: 5 (lower is better)
Translates to: RSSNGSLFNVGSCLTPEMGFQIW*GARGRH
Trigger: ATGCCTCCCTCTGGCCCCCAACCAAATTTGGAAACC...CATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATTTGAAGATCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTGGTTCACACCAAGGTTACCCATCCTTaGGGGTTGCTTGTTTTTACT +
Preference number: 5 (lower is better)
Translates to: DFLTRQSYCSADITVVHTKVTHP*GLLVFT
Trigger: AGTAAAAACAAGCAACCCCAAAGGATGGGTAACCTT...GGTGTGAACCACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR CAA 90 bp GTCAAAGGTTACCCATCCTTTGGGGTTGCTTGTTTTTACTGTAGACTGGCTCTGGCTGTTCCAGGGCTTTaGGGTGCTCCAAATTCTTTT +
Preference number: 5 (lower is better)
Translates to: VKGYPSFGVACFYCRLALAVPGL*GAPNSF
Trigger: AAAAGAATTTGGAGCACCCAAAAGCCCTGGAACAGC...CAGAGCCAGTCTACAGTAAAAACAAGCAACCCCAAAGGATGGGTAACCTTTGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154276.8
CDS TCA 90 bp AAAGACACCATGTGGATATCAGAAGCGTGTTCAGAGGCTTTTAAATaGCTCTGGAAAGCCTTGCTCAGCATATGCTCGCCTTCCTTAGAC +
Preference number: 5 (lower is better)
Translates to: KDTMWISEACSEAFK*LWKALLSICSPSLD
Trigger: GTCTAAGGAAGGCGAGCATATGCTGAGCAAGGCTTTCCAGAGTCATTTAAAAGCCTCTGAACACGCTTCTGATATCCACATGGTGTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CCA 90 bp TCCCGCCGTTCACATTCCAGGTGCCAACACACACTCGGATCTTCTTaGGCTTTGAGTATTTGTAGAAGTTCTCACACATGTTCTTTAAGA +
Preference number: 5 (lower is better)
Translates to: SRRSHSRCQHTLGSS*ALSICRSSHTCSLR
Trigger: TCTTAAAGAACATGTGTGAGAACTTCTACAAATACTCAAAGCCCAAGAAGATCCGAGTGTGTGTTGGCACCTGGAATGTGAACGGCGGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CCA 90 bp AGTTTTCGTGCTATTTCTACAAAATCTTCATTTCTCTCTTTGACTTaGGACTGCCCTGCAGCAAAGTGGCTGCAGACGAAGCAAAGGCTG +
Preference number: 5 (lower is better)
Translates to: SFRAISTKSSFLSLT*DCPAAKWLQTKQRL
Trigger: CAGCCTTTGCTTCGTCTGCAGCCACTTTGCTGCAGGGCAGTCCCAAGTCAAAGAGAGAAATGAAGATTTTGTAGAAATAGCACGAAAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCACGATGGGATCCCACTaGCAACCCTGGTTGCTCCCA +
Preference number: 5 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFTMGSH*QPWLLP
Trigger: TGGGAGCAACCAGGGTTGCAAGTGGGATCCCATCGT...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGATTGCAACGGCGCCCTaGTTTCCAGTTGCACCTCCC +
Preference number: 5 (lower is better)
Translates to: DSTSHKICTECIPATLILIATAP*FPVAPP
Trigger: GGGAGGTGCAACTGGAAACAAGGGCGCCGTTGCAAT...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GCCTTTGATACAGCAAGCACACTAAGTGAGAGATCTTCAAATGGGTCACTCTTCTCTTCATTTCTCTCTTaGACTTGGGACTGCCCTGCA +
Preference number: 5 (lower is better)
Translates to: AFDTASTLSERSSNGSLFSSFLS*TWDCPA
Trigger: TGCAGGGCAGTCCCAAGTCAAAGAGAGAAATGAAGA...GAAGAGTGACCCATTTGAAGATCTCTCACTTAGTGTGCTTGCTGTATCAAAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS TCA 90 bp TGTGCTCTTGCATGCTTCGATGTGCATTCAGACTCAGATCTAAGCTaGCTCCAGATGCAGACCATGCAAAATAAAAGTTTCCCGAGTTCA +
Preference number: 5 (lower is better)
Translates to: CALACFDVHSDSDLS*LQMQTMQNKSFPSS
Trigger: TGAACTCGGGAAACTTTTATTTTGCATGGTCTGCATCTGGAGTCAGCTTAGATCTGAGTCTGAATGCACATCGAAGCATGCAAGAGCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCTTGGTTCCCCGGACATaGAACCTTGTCCCAGCTCGT +
Preference number: 5 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFLVPRT*NLVPAR
Trigger: ACGAGCTGGGACAAGGTTCAATGTCCGGGGAACCAA...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp AGATCTTCAAATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGTGGCTTCAAATCCCCTaGACATACGAACACGATGGG +
Preference number: 5 (lower is better)
Translates to: RSSNGSLFNVGSCLTPEMWLQIP*TYEHDG
Trigger: CCCATCGTGTTCGTATGTCAAGGGGATTTGAAGCCA...CATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATTTGAAGATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp ACGGCCAACTGTAAATGCCCAGAGAAAGGCATCATAGAGGTACAGAGGAGGAAGTTCTGGACTTGTGGTTaGAGAATACTGTGTAGTTTT +
Preference number: 5 (lower is better)
Translates to: TANCKCPEKGIIEVQRRKFWTCG*RILCSF
Trigger: AAAACTACACAGTATTCTCAAACCACAAGTCCAGAA...CTTCCTCCTCTGTACCTCTATGATGCCTTTCTCTGGGCATTTACAGTTGGCCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GCAGCTACCAGACTTCCTGACAAGGCAGAGCTATTGCTCTGCAGACATTACAGTTTCTGGACTTGTGGTTaGAGAATACTGTGTAGTTTT +
Preference number: 5 (lower is better)
Translates to: AATRLPDKAELLLCRHYSFWTCG*RILCSF
Trigger: AAAACTACACAGTATTCTCAAACCACAAGTCCAGAA...ACTGTAATGTCTGCAGAGCAATAGCTCTGCCTTGTCAGGAAGTCTGGTAGCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCAGCTGTTCCAGGGCTTTaGGGTGCTTCTATCTCTCTC +
Preference number: 5 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPAVPGL*GASISL
Trigger: GAGAGAGATAGAAGCACCCAAAAGCCCTGGAACAGC...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TTTGCAAAGGTGCTCTGTCCTAACAGATCTGCTCTAGGAGAGAAGTGCGATGCAAATGTTGGCTCTTGTTaGACACCAGAAATGCCATTT +
Preference number: 5 (lower is better)
Translates to: FAKVLCPNRSALGEKCDANVGSC*TPEMPF
Trigger: AAATGGCATTTCTGGTGTCAAACAAGAGCCAACATT...TGCATCGCACTTCTCTCCTAGAGCAGATCTGTTAGGACAGAGCACCTTTGCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR CAA 90 bp GAATCAACATCTTTGGGTCTGGGGTTAGAACAGGTGAAATCTGAACAGAAGGCTAACAGATCCTCGGATTaGTATGAAGGAAGAGACACA +
Preference number: 5 (lower is better)
Translates to: ESTSLGLGLEQVKSEQKANRSSD*YEGRDT
Trigger: TGTGTCTCTTCCTTCATACAAATCCGAGGATCTGTT...AGCCTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCATGGCTTCAAATCCCCTaGACATACGAACACGATGGG +
Preference number: 5 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPWLQIP*TYEHDG
Trigger: CCCATCGTGTTCGTATGTCAAGGGGATTTGAAGCCA...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TCATGGATGTGCTATGTAGCCTCTTACATGGGAGAACATACACTGGACATGTTCATGCCTGCACACTATTaGTTCTATCCAGACAATCCA +
Preference number: 5 (lower is better)
Translates to: SWMCYVASYMGEHTLDMFMPAHY*FYPDNP
Trigger: TGGATTGTCTGGATAGAACAAATAGTGTGCAGGCAT...GAACATGTCCAGTGTATGTTCTCCCATGTAAGAGGCTACATAGCACATCCATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GCTTTGACCAGACCTGGCAAATACACACGATGTCGAGTTCTTTGTAGCAAACTTATGCCTGCACACTATTaGTTCTATCCAGACAATCCA +
Preference number: 5 (lower is better)
Translates to: ALTRPGKYTRCRVLCSKLMPAHY*FYPDNP
Trigger: TGGATTGTCTGGATAGAACAAATAGTGTGCAGGCAT...AAGTTTGCTACAAAGAACTCGACATCGTGTGTATTTGCCAGGTCTGGTCAAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp AATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTAGCAGGACATACTTGTaGTCCCTGGAGATGGTCTTC +
Preference number: 5 (lower is better)
Translates to: NGSLFNVGSCLTPEMPFISRTYL*SLEMVF
Trigger: GAAGACCATCTCCAGGGACAACAAGTATGTCCTGCT...AATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTTTTACGCTGTTCCAGGGCTTTaGGGTGCTTCTATCTCTCTC +
Preference number: 5 (lower is better)
Translates to: VTLQCWLLFDTRNAIYFYAVPGL*GASISL
Trigger: GAGAGAGATAGAAGCACCCAAAAGCCCTGGAACAGC...GTAAAAATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp CTGCTCTATTCTATTCATCTGAAGAGAAAAAGTAGAACTCCAGTTAATAAGAGGGGTTTCCAAATTTGGTaGGGGGCCAGAGGGAGGCAT +
Preference number: 5 (lower is better)
Translates to: LLYSIHLKRKSRTPVNKRGFQIW*GARGRH
Trigger: ATGCCTCCCTCTGGCCCCCAACCAAATTTGGAAACC...CCTCTTATTAACTGGAGTTCTACTTTTTCTCTTCAGATGAATAGAATAGAGCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp CAGCAATCTACTAGAGAGAACAGAGACTCACAGAGATTCTTAGTGTCTGTTTTCAGGGTTAACTTGACTTaGCGATGCAGAAGGCAACTG +
Preference number: 5 (lower is better)
Translates to: QQSTRENRDSQRFLVSVFRVNLT*RCRRQL
Trigger: CAGTTGCCTTCTGCATCGCAAAGTCAAGTTAACCCT...GAAAACAGACACTAAGAATCTCTGTGAGTCTCTGTTCTCTCTAGTAGATTGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS-3UTR CAA 90 bp AATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTATTTCTCTCTTTGACTaGGGACTGCCCTGCAGCAAA +
Preference number: 5 (lower is better)
Translates to: NGSLFNVGSCLTPEMPFIISLFD*GLPCSK
Trigger: TTTGCTGCAGGGCAGTCCCAAGTCAAAGAGAGAAAT...AATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCAATTTCTCTCTTTGACTaGGGACTGCCCTGCAGCAAA +
Preference number: 5 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPISLFD*GLPCSK
Trigger: TTTGCTGCAGGGCAGTCCCAAGTCAAAGAGAGAAAT...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCATCTTCATTTCTCTCTTaGACTTGGGACTGCCCTGCA +
Preference number: 5 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPSSFLS*TWDCPA
Trigger: TGCAGGGCAGTCCCAAGTCAAAGAGAGAAATGAAGA...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCAGACAATCCAAGCAGTTaGTTCGAACTGTACCACTCT +
Preference number: 5 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPDNPSS*FELYHS
Trigger: AGAGTGGTACAGTTCGAACAAACTGCTTGGATTGTC...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCTCAGCTAAATCGCTGTaGAGAGTATTTCCCAGGAGC +
Preference number: 5 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFSAKSL*RVFPRS
Trigger: GCTCCTGGGAAATACTCTCAACAGCGATTTAGCTGA...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTTTTACTCAGCTAAATCGCTGTaGAGAGTATTTCCCAGGAGC +
Preference number: 5 (lower is better)
Translates to: VTLQCWLLFDTRNAIYFYSAKSL*RVFPRS
Trigger: GCTCCTGGGAAATACTCTCAACAGCGATTTAGCTGA...GTAAAAATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTTTTACCTTACTTCTCTTATCTaGAAACTCCTGGATGCCGGC +
Preference number: 5 (lower is better)
Translates to: VTLQCWLLFDTRNAIYFYLTSLI*KLLDAG
Trigger: GCCGGCATCCAGGAGTTTCAAGATAAGAGAAGTAAG...GTAAAAATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TGCCTTTCACAACAATCTCACCAGAACTCTGGAAGCTCTTTGGTAAGTATCCATCAGAGAATCCCAGTTTaGTTGTCTTATGAGCTCTTT +
Preference number: 5 (lower is better)
Translates to: CLSQQSHQNSGSSLVSIHQRIPV*LSYELF
Trigger: AAAGAGCTCATAAGACAACAAAACTGGGATTCTCTG...ATGGATACTTACCAAAGAGCTTCCAGAGTTCTGGTGAGATTGTTGTGAAAGGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCATCTTGTGCAGAACTTTaGATTGAGACCAGCACTGTG +
Preference number: 5 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPSCAEL*IETSTV
Trigger: CACAGTGCTGGTCTCAATCAAAAGTTCTGCACAAGA...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGAAAACCTATTGTCGGTaGTGTGCTCTTGCATGCTTC +
Preference number: 5 (lower is better)
Translates to: DSTSHKICTECIPATLILKTYCR*CALACF
Trigger: GAAGCATGCAAGAGCACACAACCGACAATAGGTTTT...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp AATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTAACAGATCCTCGGATTaGTATGAAGGAAGAGACACA +
Preference number: 5 (lower is better)
Translates to: NGSLFNVGSCLTPEMPFINRSSD*YEGRDT
Trigger: TGTGTCTCTTCCTTCATACAAATCCGAGGATCTGTT...AATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCGACAATCCAAGCAGTTaGTTCGAACTGTACCACTCT +
Preference number: 5 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFDNPSS*FELYHS
Trigger: AGAGTGGTACAGTTCGAACAAACTGCTTGGATTGTC...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp AATGGGTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTATGCCTGCACACTATTaGTTCTATCCAGACAATCCA +
Preference number: 5 (lower is better)
Translates to: NGSLFNVGSCLTPEMPFIMPAHY*FYPDNP
Trigger: TGGATTGTCTGGATAGAACAAATAGTGTGCAGGCAT...AATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TGCCTTTCACAACAATCTCACCAGAACTCTGGAAGCTCTTTGGTAAGTATCCATAGAATCCCAGTTTTGTaGTCTTATGAGCTCTTTAAC +
Preference number: 5 (lower is better)
Translates to: CLSQQSHQNSGSSLVSIHRIPVL*SYELFN
Trigger: GTTAAAGAGCTCATAAGACAACAAAACTGGGATTCT...ATGGATACTTACCAAAGAGCTTCCAGAGTTCTGGTGAGATTGTTGTGAAAGGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCAGGATCTTCTTGGGCTTaGAGTATTTGTAGAAGTTCT +
Preference number: 5 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPGSSWA*SICRSS
Trigger: AGAACTTCTACAAATACTCAAAGCCCAAGAAGATCC...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp CTGCTCTATTCTATTCATCTGAAGAGAAAAAGTAGAACTCCAGTTAATAAGAGGACAGCTTCTGGTTGGTaGTGCTTGCATTCACAATGT +
Preference number: 5 (lower is better)
Translates to: LLYSIHLKRKSRTPVNKRTASGW*CLHSQC
Trigger: ACATTGTGAATGCAAGCACAACCAACCAGAAGCTGT...CCTCTTATTAACTGGAGTTCTACTTTTTCTCTTCAGATGAATAGAATAGAGCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS CCA 90 bp GCTTTGAGTATTTGTAGAAGTTCTCACACATGTTCTTTAAGACTTTaGAAGATGCTGACTGTAATGTCTGTTCAGAAACACGCAAACTTC +
Preference number: 5 (lower is better)
Translates to: ALSICRSSHTCSLRL*KMLTVMSVQKHANF
Trigger: GAAGTTTGCGTGTTTCTGAACAGACATTACAGTCAGCATCTTCCAAAGTCTTAAAGAACATGTGTGAGAACTTCTACAAATACTCAAAGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp TACACATACACAGACCTTTTGACTAAAGTGATGCCTTTCACAACAATCTCACCATCTTCTTCCAAATGTTaGATCCAGTCTGGACTTTTT +
Preference number: 5 (lower is better)
Translates to: YTYTDLLTKVMPFTTISPSSSKC*IQSGLF
Trigger: AAAAAGTCCAGACTGGATCAAACATTTGGAAGAAGA...TGGTGAGATTGTTGTGAAAGGCATCACTTTAGTCAAAAGGTCTGTGTATGTGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GTCACTCTTCAATGTTGGCTCTTGTTTGACACCAGAAATGCCATTTATTTTTACTCCTCCTTTAACCATTaGATGATAGTCAAAAGACAC +
Preference number: 5 (lower is better)
Translates to: VTLQCWLLFDTRNAIYFYSSFNH*MIVKRH
Trigger: GTGTCTTTTGACTATCATCAAATGGTTAAAGGAGGA...GTAAAAATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118390.10
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GACAGCACATCTCACAAGATATGTACAGAATGTATACCAGCAACTTTAATACTGTCCTCCTTTAACCATTaGATGATAGTCAAAAGACAC +
Preference number: 5 (lower is better)
Translates to: DSTSHKICTECIPATLILSSFNH*MIVKRH
Trigger: GTGTCTTTTGACTATCATCAAATGGTTAAAGGAGGA...CAGTATTAAAGTTGCTGGTATACATTCTGTACATATCTTGTGAGATGTGCTGTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCTTCTGGACTTGTGGTTaGAGAATACTGTGTAGTTTT +
Preference number: 5 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFFWTCG*RILCSF
Trigger: AAAACTACACAGTATTCTCAAACCACAAGTCCAGAA...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGAGAATCCCAGTTTTGTaGTCTTATGAGCTCTTTAAC +
Preference number: 5 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVRIPVL*SYELFN
Trigger: GTTAAAGAGCTCATAAGACAACAAAACTGGGATTCT...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp CTGCTCTATTCTATTCATCTGAAGAGAAAAAGTAGAACTCCAGTTAATAAGAGGCAGAGAATCCCAGTTTaGTTGTCTTATGAGCTCTTT +
Preference number: 5 (lower is better)
Translates to: LLYSIHLKRKSRTPVNKRQRIPV*LSYELF
Trigger: AAAGAGCTCATAAGACAACAAAACTGGGATTCTCTG...CCTCTTATTAACTGGAGTTCTACTTTTTCTCTTCAGATGAATAGAATAGAGCAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp CTAATCTTACAATACACATCTTTAAAGGTTCAGGTAGGTAGATGTAGGAACGTGTCTTCTTCCAAATGTTaGATCCAGTCTGGACTTTTT +
Preference number: 5 (lower is better)
Translates to: LILQYTSLKVQVGRCRNVSSSKC*IQSGLF
Trigger: AAAAAGTCCAGACTGGATCAAACATTTGGAAGAAGA...CACGTTCCTACATCTACCTACCTGAACCTTTAAAGATGTGTATTGTAAGATTAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS-3UTR CAA 90 bp GTTGTGTGGGCTTTACGTGATTTTTATGTGACTATGCGAATAAGGACTATTTTCTCTTCTTCCAAATGTTaGATCCAGTCTGGACTTTTT +
Preference number: 5 (lower is better)
Translates to: VVWALRDFYVTMRIRTIFSSSKC*IQSGLF
Trigger: AAAAAGTCCAGACTGGATCAAACATTTGGAAGAAGA...GAAAATAGTCCTTATTCGCATAGTCACATAAAAATCACGTAAAGCCCACACAAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS CCA 72 bp CCGGAGGAGCGACTGGGCGGGGAGGGGGTGGTCTCTTaGGCTCTAGAGTCTGGGAAGAATCCTTCTGGGCCG +
Preference number: 6 (lower is better)
Translates to: PEERLGGEGVVS*ALESGKNPSGP
Trigger: CGGCCCAGAAGGATTCTTCCCAGACTCTAGAGCCCAAGAGACCACCCCCTCCCCGCCCAGTCGCTCCTCCGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000125032.3
ENSMUST00000170853.8
ENSMUST00000231524.2
CDS CCA 72 bp GCTAGGTCTGATGGGAAGAGAAGGGGCGGAGTACTCTaGTACTGTGGGGGACTGGCAGGGACTGGTCCGGGG +
Preference number: 6 (lower is better)
Translates to: ARSDGKRRGGVL*YCGGLAGTGPG
Trigger: CCCCGGACCAGTCCCTGCCAGTCCCCCACAGTACCAGAGTACTCCGCCCCTTCTCTTCCCATCAGACCTAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000125032.3
ENSMUST00000170853.8
ENSMUST00000231524.2
CDS CCA 72 bp CTGGCTCTGAGGGGCGCTGATCACTCCAGCACGAGCTaGAATTGTCGGTCTAGCCGCACCGTATCCAGCGGG +
Preference number: 6 (lower is better)
Translates to: LALRGADHSSTS*NCRSSRTVSSG
Trigger: CCCGCTGGATACGGTGCGGCTAGACCGACAATTCCAGCTCGTGCTGGAGTGATCAGCGCCCCTCAGAGCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000125032.3
ENSMUST00000154276.8
ENSMUST00000170853.8
ENSMUST00000231524.2
CDS CCA 72 bp AATTGTCGGTCTAGCCGCACCGTATCCAGCGGGTCCTaGGCCTGCAAGTCCGGCTTGAGGGGAAGGCTGATT +
Preference number: 6 (lower is better)
Translates to: NCRSSRTVSSGS*ACKSGLRGRLI
Trigger: AATCAGCCTTCCCCTCAAGCCGGACTTGCAGGCCCAGGACCCGCTGGATACGGTGCGGCTAGACCGACAATT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000125032.3
ENSMUST00000154276.8
ENSMUST00000170853.8
ENSMUST00000231524.2
CDS CCA 72 bp GCTGCTCCGAGGCCAGCAGGACATACTTGTTGTCCCTaGAGATGGTCTTCTGCAGCTCCACTGCCCACAGCT +
Preference number: 6 (lower is better)
Translates to: AAPRPAGHTCCP*RWSSAAPLPTA
Trigger: AGCTGTGGGCAGTGGAGCTGCAGAAGACCATCTCCAGGGACAACAAGTATGTCCTGCTGGCCTCGGAGCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CAA 90 bp TCTAGCCGCACCGTATCCAGCGGGTCCTGGGCCTGCAAGTCCGGCTaGAGGGGAAGGCTGATTACGCCCTATATTATCTTTCCGTGCTGT +
Preference number: 6 (lower is better)
Translates to: SSRTVSSGSWACKSG*RGRLITPYIIFPCC
Trigger: ACAGCACGGAAAGATAATATAGGGCGTAATCAGCCTTCCCCTCAAGCCGGACTTGCAGGCCCAGGACCCGCTGGATACGGTGCGGCTAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000125032.3
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS GCA 72 bp GTGAGCGTCTGGTTCTTGAACGCTATGCTGCGGAACTaGTTCCCGCCGTTCACATTCCAGGTGCCAACACAC +
Preference number: 6 (lower is better)
Translates to: VSVWFLNAMLRN*FPPFTFQVPTH
Trigger: GTGTGTTGGCACCTGGAATGTGAACGGCGGGAAGCAGTTCCGCAGCATAGCGTTCAAGAACCAGACGCTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
ENSMUST00000231472.2
CDS CAA 72 bp GGAAGGACAGCAGGACCTTTCAATGTCTCCGAGGGCTaGCTTTGGCTGTCAGGAGTCGGCCTTCCAGCACAT +
Preference number: 6 (lower is better)
Translates to: GRTAGPFNVSEG*LWLSGVGLPAH
Trigger: ATGTGCTGGAAGGCCGACTCCTGACAGCCAAAGCAAGCCCTCGGAGACATTGAAAGGTCCTGCTGTCCTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000125032.3
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
ENSMUST00000231524.2
CDS GCA 72 bp GGTCTGATAAAGACAAACAGGCAGACACCCACCAGCTaGTCCGAGGCCAGCAGGACATACTTGTTGTCCCTG +
Preference number: 6 (lower is better)
Translates to: GLIKTNRQTPTS*SEASRTYLLSL
Trigger: CAGGGACAACAAGTATGTCCTGCTGGCCTCGGAGCAGCTGGTGGGTGTCTGCCTGTTTGTCTTTATCAGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS GCA 72 bp GTAGTCATCGACGTCACCTTCCATGTCAAAGTCTGCTaGGACCTCTGCGTCTTCACCAAGCAGGGTGGAGCT +
Preference number: 6 (lower is better)
Translates to: VVIDVTFHVKVC*DLCVFTKQGGA
Trigger: AGCTCCACCCTGCTTGGTGAAGACGCAGAGGTCGCAGCAGACTTTGACATGGAAGGTGACGTCGATGACTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
ENSMUST00000231524.2
CDS GCA 72 bp GCTGTAGTCATCGACGTCACCTTCCATGTCAAAGTCTaGTGCGACCTCTGCGTCTTCACCAAGCAGGGTGGA +
Preference number: 6 (lower is better)
Translates to: AVVIDVTFHVKV*CDLCVFTKQGG
Trigger: TCCACCCTGCTTGGTGAAGACGCAGAGGTCGCAGCAGACTTTGACATGGAAGGTGACGTCGATGACTACAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
ENSMUST00000231524.2
CDS GCA 72 bp GAAGGACAGCAGGACCTTTCAATGTCTCCGAGGGCTTaGTTTGGCTGTCAGGAGTCGGCCTTCCAGCACATA +
Preference number: 6 (lower is better)
Translates to: EGQQDLSMSPRA*FGCQESAFQHI
Trigger: TATGTGCTGGAAGGCCGACTCCTGACAGCCAAAGCAAGCCCTCGGAGACATTGAAAGGTCCTGCTGTCCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000125032.3
ENSMUST00000129743.2
ENSMUST00000154276.8
ENSMUST00000170853.8
ENSMUST00000231524.2
CDS CAA 72 bp ACCGTATCCAGCGGGTCCTGGGCCTGCAAGTCCGGCTaGAGGGGAAGGCTGATTACGCCCTATATTATCTTT +
Preference number: 6 (lower is better)
Translates to: TVSSGSWACKSG*RGRLITPYIIF
Trigger: AAAGATAATATAGGGCGTAATCAGCCTTCCCCTCAAGCCGGACTTGCAGGCCCAGGACCCGCTGGATACGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000125032.3
ENSMUST00000154276.8
ENSMUST00000170853.8
CDS CAA 90 bp TCCCTGGAGATGGTCTTCTGCAGCTCCACTGCCCACAGCTTCTGGTaGGTTGTGCTTGCATTCACAATGTTCCCAGCATTCAGCTCCACC +
Preference number: 6 (lower is better)
Translates to: SLEMVFCSSTAHSFW*VVLAFTMFPAFSST
Trigger: GGTGGAGCTGAATGCTGGGAACATTGTGAATGCAAGCACAACCAACCAGAAGCTGTGGGCAGTGGAGCTGCAGAAGACCATCTCCAGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS GCA 72 bp AGCAGGACATACTTGTTGTCCCTGGAGATGGTCTTCTaGAGCTCCACTGCCCACAGCTTCTGGTTGGTTGTG +
Preference number: 6 (lower is better)
Translates to: SRTYLLSLEMVF*SSTAHSFWLVV
Trigger: CACAACCAACCAGAAGCTGTGGGCAGTGGAGCTGCAGAAGACCATCTCCAGGGACAACAAGTATGTCCTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CAA 72 bp GCAGCTCCACTGCCCACAGCTTCTGGTTGGTTGTGCTaGCATTCACAATGTTCCCAGCATTCAGCTCCACCA +
Preference number: 6 (lower is better)
Translates to: AAPLPTASGWLC*HSQCSQHSAPP
Trigger: TGGTGGAGCTGAATGCTGGGAACATTGTGAATGCAAGCACAACCAACCAGAAGCTGTGGGCAGTGGAGCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CAA 72 bp GTGGTGTGGAAGAGCATCCGAATTGCAACGGCGCCCTaGTTTCCAGTTGCACCTCCCATGCCAGTTTTCACA +
Preference number: 6 (lower is better)
Translates to: VVWKSIRIATAP*FPVAPPMPVFT
Trigger: TGTGAAAACTGGCATGGGAGGTGCAACTGGAAACAAGGGCGCCGTTGCAATTCGGATGCTCTTCCACACCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS GCA 72 bp CAGCTCCACTGCCCACAGCTTCTGGTTGGTTGTGCTTaGATTCACAATGTTCCCAGCATTCAGCTCCACCAT +
Preference number: 6 (lower is better)
Translates to: QLHCPQLLVGCA*IHNVPSIQLHH
Trigger: ATGGTGGAGCTGAATGCTGGGAACATTGTGAATGCAAGCACAACCAACCAGAAGCTGTGGGCAGTGGAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS GCA 72 bp TCTGCAGCTCCACTGCCCACAGCTTCTGGTTGGTTGTaGTTGCATTCACAATGTTCCCAGCATTCAGCTCCA +
Preference number: 6 (lower is better)
Translates to: SAAPLPTASGWL*LHSQCSQHSAP
Trigger: TGGAGCTGAATGCTGGGAACATTGTGAATGCAAGCACAACCAACCAGAAGCTGTGGGCAGTGGAGCTGCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CCA 72 bp GAGATGGTCTTCTGCAGCTCCACTGCCCACAGCTTCTaGTTGGTTGTGCTTGCATTCACAATGTTCCCAGCA +
Preference number: 6 (lower is better)
Translates to: EMVFCSSTAHSF*LVVLAFTMFPA
Trigger: TGCTGGGAACATTGTGAATGCAAGCACAACCAACCAGAAGCTGTGGGCAGTGGAGCTGCAGAAGACCATCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CAA 90 bp TTCGGAAATGCCTGTCAAAGGCAGGCGCATTGGCTTCAAATCCCCTaGACATACGAACACGATGGGATCCCACTTGCAACCCTGGTTGCT +
Preference number: 6 (lower is better)
Translates to: FGNACQRQAHWLQIP*TYEHDGIPLATLVA
Trigger: AGCAACCAGGGTTGCAAGTGGGATCCCATCGTGTTCGTATGTCAAGGGGATTTGAAGCCAATGCGCCTGCCTTTGACAGGCATTTCCGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CAA 90 bp CAAAGGCTGGTGGTGTGGAAGAGCATCCGAATTGCAACGGCGCCCTaGTTTCCAGTTGCACCTCCCATGCCAGTTTTCACAGTATCAACT +
Preference number: 6 (lower is better)
Translates to: QRLVVWKSIRIATAP*FPVAPPMPVFTVST
Trigger: AGTTGATACTGTGAAAACTGGCATGGGAGGTGCAACTGGAAACAAGGGCGCCGTTGCAATTCGGATGCTCTTCCACACCACCAGCCTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CAA 90 bp TGGAGATGGTCTTCTGCAGCTCCACTGCCCACAGCTTCTGGTTGGTaGTGCTTGCATTCACAATGTTCCCAGCATTCAGCTCCACCATTT +
Preference number: 6 (lower is better)
Translates to: WRWSSAAPLPTASGW*CLHSQCSQHSAPPF
Trigger: AAATGGTGGAGCTGAATGCTGGGAACATTGTGAATGCAAGCACAACCAACCAGAAGCTGTGGGCAGTGGAGCTGCAGAAGACCATCTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS TCA 72 bp TGGCAACATGACCATCATCGTTGGTTCCCCGGACATTaGACCTTGTCCCAGCTCGTTCACAGCTTAGTCTTG +
Preference number: 6 (lower is better)
Translates to: WQHDHHRWFPGH*TLSQLVHSLVL
Trigger: CAAGACTAAGCTGTGAACGAGCTGGGACAAGGTTCAATGTCCGGGGAACCAACGATGATGGTCATGTTGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS GCA 72 bp ACAGCCCCAGACTCGAACATGAGACATTCTTCCTTATaGCTAGTTTCCACTATGAGGCTGAACGGTGGGGGA +
Preference number: 6 (lower is better)
Translates to: TAPDSNMRHSSL*LVSTMRLNGGG
Trigger: TCCCCCACCGTTCAGCCTCATAGTGGAAACTAGGCATAAGGAAGAATGTCTCATGTTCGAGTCTGGGGCTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS GCA 72 bp CAGTTGGCTTACTTCTCTTATCTTGAAACTCCTGGATaGCGGCTAACTTGGGAGCGTCCAGAAGCCAGTCTG +
Preference number: 6 (lower is better)
Translates to: QLAYFSYLETPG*RLTWERPEASL
Trigger: CAGACTGGCTTCTGGACGCTCCCAAGTTAGCCGGCATCCAGGAGTTTCAAGATAAGAGAAGTAAGCCAACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
ENSMUST00000231472.2
CDS CCA 72 bp TGGTCTTCTGCAGCTCCACTGCCCACAGCTTCTGGTTaGTTGTGCTTGCATTCACAATGTTCCCAGCATTCA +
Preference number: 6 (lower is better)
Translates to: WSSAAPLPTASG*LCLHSQCSQHS
Trigger: TGAATGCTGGGAACATTGTGAATGCAAGCACAACCAACCAGAAGCTGTGGGCAGTGGAGCTGCAGAAGACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CAA 72 bp CATACGAACACGATGGGATCCCACTTGCAACCCTGGTaGCTCCCAGAACAATGGAACAGATCCTCGGATTTG +
Preference number: 6 (lower is better)
Translates to: HTNTMGSHLQPW*LPEQWNRSSDL
Trigger: CAAATCCGAGGATCTGTTCCATTGTTCTGGGAGCAACCAGGGTTGCAAGTGGGATCCCATCGTGTTCGTATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CAA 72 bp ATGGTCTTCTGCAGCTCCACTGCCCACAGCTTCTGGTaGGTTGTGCTTGCATTCACAATGTTCCCAGCATTC +
Preference number: 6 (lower is better)
Translates to: MVFCSSTAHSFW*VVLAFTMFPAF
Trigger: GAATGCTGGGAACATTGTGAATGCAAGCACAACCAACCAGAAGCTGTGGGCAGTGGAGCTGCAGAAGACCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS GCA 72 bp ATACGAACACGATGGGATCCCACTTGCAACCCTGGTTaGTCCCAGAACAATGGAACAGATCCTCGGATTTGT +
Preference number: 6 (lower is better)
Translates to: IRTRWDPTCNPG*SQNNGTDPRIC
Trigger: ACAAATCCGAGGATCTGTTCCATTGTTCTGGGAGCAACCAGGGTTGCAAGTGGGATCCCATCGTGTTCGTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CAA 72 bp GCACGCAAACTTCCAGTAGTTAGAAGCGCTCGGGCTTaGTCAGCTAAATCGCTGTTGAGAGTATTTCCCAGG +
Preference number: 6 (lower is better)
Translates to: ARKLPVVRSARA*SAKSLLRVFPR
Trigger: CCTGGGAAATACTCTCAACAGCGATTTAGCTGACAAAGCCCGAGCGCTTCTAACTACTGGAAGTTTGCGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130813.3
CDS CAA 90 bp TTGGAAGATGCACGCAAACTTCCAGTAGTTAGAAGCGCTCGGGCTTaGTCAGCTAAATCGCTGTTGAGAGTATTTCCCAGGAGCAGGACA +
Preference number: 6 (lower is better)
Translates to: LEDARKLPVVRSARA*SAKSLLRVFPRSRT
Trigger: TGTCCTGCTCCTGGGAAATACTCTCAACAGCGATTTAGCTGACAAAGCCCGAGCGCTTCTAACTACTGGAAGTTTGCGTGCATCTTCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130813.3
CDS GCA 72 bp AGGGGAAGGCTGATTACGCCCTATATTATCTTTCCGTaGTGTTCCAGGGCTTTTGGGTGCTTCTATCTCTCT +
Preference number: 6 (lower is better)
Translates to: RGRLITPYIIFP*CSRAFGCFYLS
Trigger: AGAGAGATAGAAGCACCCAAAAGCCCTGGAACAGCACGGAAAGATAATATAGGGCGTAATCAGCCTTCCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS CCA 72 bp ATCAACTGCAACATCCCTGATAAAAGGAGCGTGCTGTaGTCTGATAAAGACAAACAGGCAGACACCCACCAG +
Preference number: 6 (lower is better)
Translates to: INCNIPDKRSVL*SDKDKQADTHQ
Trigger: CTGGTGGGTGTCTGCCTGTTTGTCTTTATCAGACCACAGCACGCTCCTTTTATCAGGGATGTTGCAGTTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CAA 72 bp ACACGCAAACTTCCAGTAGTTAGAAGCGCTCGGGCTTaGTCAGCTAAATCGCTGTTGAGAGTATTTCCCAGG +
Preference number: 6 (lower is better)
Translates to: TRKLPVVRSARA*SAKSLLRVFPR
Trigger: CCTGGGAAATACTCTCAACAGCGATTTAGCTGACAAAGCCCGAGCGCTTCTAACTACTGGAAGTTTGCGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS CAA 90 bp TGTTCAGAAACACGCAAACTTCCAGTAGTTAGAAGCGCTCGGGCTTaGTCAGCTAAATCGCTGTTGAGAGTATTTCCCAGGAGCAGGACA +
Preference number: 6 (lower is better)
Translates to: CSETRKLPVVRSARA*SAKSLLRVFPRSRT
Trigger: TGTCCTGCTCCTGGGAAATACTCTCAACAGCGATTTAGCTGACAAAGCCCGAGCGCTTCTAACTACTGGAAGTTTGCGTGTTTCTGAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS TCA 72 bp ACCTTGTCCCAGCTCGTTCACAGCTTAGTCTTGAGATaGGGCAAGCTTTTGCCTGTTTATGGGCAGCATAAA +
Preference number: 6 (lower is better)
Translates to: TLSQLVHSLVLR*GKLLPVYGQHK
Trigger: TTTATGCTGCCCATAAACAGGCAAAAGCTTGCCTCATCTCAAGACTAAGCTGTGAACGAGCTGGGACAAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS GCA 72 bp AGCTGCTTAGCGAGCATCTCTAAGCCAAGGAATGCCTaGACACTATTTGTTCTATCCAGACAATCCAAGCAG +
Preference number: 6 (lower is better)
Translates to: SCLASISKPRNA*TLFVLSRQSKQ
Trigger: CTGCTTGGATTGTCTGGATAGAACAAATAGTGTGCAGGCATTCCTTGGCTTAGAGATGCTCGCTAAGCAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS GCA 72 bp AGAGTATTTCCCAGGAGCAGGACATCAATGGCTTCCTaGTTGGAGCTGTCGAAGAAGTTATTCTGGATGGTT +
Preference number: 6 (lower is better)
Translates to: RVFPRSRTSMAS*LELSKKLFWMV
Trigger: AACCATCCAGAATAACTTCTTCGACAGCTCCAAGCAGGAAGCCATTGATGTCCTGCTCCTGGGAAATACTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CAA 90 bp GGAATGCCTGCACACTATTTGTTCTATCCAGACAATCCAAGCAGTTaGTTCGAACTGTACCACTCTGGCACCTTTGAACTTCACTGCCAT +
Preference number: 6 (lower is better)
Translates to: GMPAHYLFYPDNPSS*FELYHSGTFELHCH
Trigger: ATGGCAGTGAAGTTCAAAGGTGCCAGAGTGGTACAGTTCGAACAAACTGCTTGGATTGTCTGGATAGAACAAATAGTGTGCAGGCATTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CAA 90 bp CTGGTTGATGAGCTGATCCCCAGCGATCAGAGAATCCCAGTTTTGTaGTCTTATGAGCTCTTTAACCTCTTCATTCGGAAGGTCAATTCG +
Preference number: 6 (lower is better)
Translates to: LVDELIPSDQRIPVL*SYELFNLFIRKVNS
Trigger: CGAATTGACCTTCCGAATGAAGAGGTTAAAGAGCTCATAAGACAACAAAACTGGGATTCTCTGATCGCTGGGGATCAGCTCATCAACCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS TCA 72 bp ATGTGGATATCAGAAGCGTGTTCAGAGGCTTTTAAATaGCTCTGGAAAGCCTTGCTCAGCATATGCTCGCCT +
Preference number: 6 (lower is better)
Translates to: MWISEACSEAFK*LWKALLSICSP
Trigger: AGGCGAGCATATGCTGAGCAAGGCTTTCCAGAGTCATTTAAAAGCCTCTGAACACGCTTCTGATATCCACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CAA 72 bp GAGCTGATCCCCAGCGATCAGAGAATCCCAGTTTTGTaGTCTTATGAGCTCTTTAACCTCTTCATTCGGAAG +
Preference number: 6 (lower is better)
Translates to: ELIPSDQRIPVL*SYELFNLFIRK
Trigger: CTTCCGAATGAAGAGGTTAAAGAGCTCATAAGACAACAAAACTGGGATTCTCTGATCGCTGGGGATCAGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS CCA 72 bp TTCCTTATGCCTAGTTTCCACTATGAGGCTGAACGGTaGGGGATCCAATTTGTGGTAGATTCGAAATCCTTT +
Preference number: 6 (lower is better)
Translates to: FLMPSFHYEAER*GIQFVVDSKSF
Trigger: AAAGGATTTCGAATCTACCACAAATTGGATCCCCCACCGTTCAGCCTCATAGTGGAAACTAGGCATAAGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CAA 72 bp AATGCAGAGACTGATTCCAGAAAAACCTATTGTCGGTaGTGTGCTCTTGCATGCTTCGATGTGCATTCAGAC +
Preference number: 6 (lower is better)
Translates to: NAETDSRKTYCR*CALACFDVHSD
Trigger: GTCTGAATGCACATCGAAGCATGCAAGAGCACACAACCGACAATAGGTTTTTCTGGAATCAGTCTCTGCATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CAA 72 bp CGAGCATCTCTAAGCCAAGGAATGCCTGCACACTATTaGTTCTATCCAGACAATCCAAGCAGTTTGTTCGAA +
Preference number: 6 (lower is better)
Translates to: RASLSQGMPAHY*FYPDNPSSLFE
Trigger: TTCGAACAAACTGCTTGGATTGTCTGGATAGAACAAATAGTGTGCAGGCATTCCTTGGCTTAGAGATGCTCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CAA 90 bp CGTTCACATTCCAGGTGCCAACACACACTCGGATCTTCTTGGGCTTaGAGTATTTGTAGAAGTTCTCACACATGTTCTTTAAGACTTTGG +
Preference number: 6 (lower is better)
Translates to: RSHSRCQHTLGSSWA*SICRSSHTCSLRLW
Trigger: CCAAAGTCTTAAAGAACATGTGTGAGAACTTCTACAAATACTCAAAGCCCAAGAAGATCCGAGTGTGTGTTGGCACCTGGAATGTGAACG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CAA 90 bp TTTCTGGTTGATGAGCTGATCCCCAGCGATCAGAGAATCCCAGTTTaGTTGTCTTATGAGCTCTTTAACCTCTTCATTCGGAAGGTCAAT +
Preference number: 6 (lower is better)
Translates to: FLVDELIPSDQRIPV*LSYELFNLFIRKVN
Trigger: ATTGACCTTCCGAATGAAGAGGTTAAAGAGCTCATAAGACAACAAAACTGGGATTCTCTGATCGCTGGGGATCAGCTCATCAACCAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS TCA 72 bp GCATGCTTCGATGTGCATTCAGACTCAGATCTAAGCTaGCTCCAGATGCAGACCATGCAAAATAAAAGTTTC +
Preference number: 6 (lower is better)
Translates to: ACFDVHSDSDLS*LQMQTMQNKSF
Trigger: GAAACTTTTATTTTGCATGGTCTGCATCTGGAGTCAGCTTAGATCTGAGTCTGAATGCACATCGAAGCATGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS GCA 72 bp AGTTTCCCGAGTTCAAAACTTTTCGTACTTCCGAAATaGGGTCCTCATCTGAAGCATCAACTCGCAATGATA +
Preference number: 6 (lower is better)
Translates to: SFPSSKLFVLPK*GPHLKHQLAMI
Trigger: TATCATTGCGAGTTGATGCTTCAGATGAGGACCGCATTTCGGAAGTACGAAAAGTTTTGAACTCGGGAAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CAA 72 bp GCACACTATTTGTTCTATCCAGACAATCCAAGCAGTTaGTTCGAACTGTACCACTCTGGCACCTTTGAACTT +
Preference number: 6 (lower is better)
Translates to: AHYLFYPDNPSS*FELYHSGTFEL
Trigger: AAGTTCAAAGGTGCCAGAGTGGTACAGTTCGAACAAACTGCTTGGATTGTCTGGATAGAACAAATAGTGTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS CAA 72 bp TCCAGGTGCCAACACACACTCGGATCTTCTTGGGCTTaGAGTATTTGTAGAAGTTCTCACACATGTTCTTTA +
Preference number: 6 (lower is better)
Translates to: SRCQHTLGSSWA*SICRSSHTCSL
Trigger: TAAAGAACATGTGTGAGAACTTCTACAAATACTCAAAGCCCAAGAAGATCCGAGTGTGTGTTGGCACCTGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
CDS TCA 72 bp CTTCAAATGGGTCACTCTTCAATGTTGGCTCTTGTTTaGCACCAGAAATGCCATTTATTTTTACCTGCAGCT +
Preference number: 6 (lower is better)
Translates to: LQMGHSSMLALV*HQKCHLFLPAA
Trigger: AGCTGCAGGTAAAAATAAATGGCATTTCTGGTGTCAAACAAGAGCCAACATTGAAGAGTGACCCATTTGAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000121759.8
CDS CAA 90 bp TCACAATGTTCCCAGCATTCAGCTCCACCATTTCTTCAAAGCCAATaGCAAATATATCAGTTGGCTTACTTCTCTTATCTTGAAACTCCT +
Preference number: 6 (lower is better)
Translates to: SQCSQHSAPPFLQSQ*QIYQLAYFSYLETP
Trigger: AGGAGTTTCAAGATAAGAGAAGTAAGCCAACTGATATATTTGCAATTGGCTTTGAAGAAATGGTGGAGCTGAATGCTGGGAACATTGTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
ENSMUST00000231472.2
CDS GCA 72 bp TTCTACAAATCTTATGAGTATAACTTCACCAAAGTGTaGAAACTGCCGCAGAAGCTCATCAATCAAAGCATC +
Preference number: 6 (lower is better)
Translates to: FYKSYEYNFTKV*KLPQKLINQSI
Trigger: GATGCTTTGATTGATGAGCTTCTGCGGCAGTTTGCACACTTTGGTGAAGTTATACTCATAAGATTTGTAGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS CCA 72 bp CACCATTTCTTCAAAGCCAATTGCAAATATATCAGTTaGCTTACTTCTCTTATCTTGAAACTCCTGGATGCC +
Preference number: 6 (lower is better)
Translates to: HHFFKANCKYIS*LTSLILKLLDA
Trigger: GGCATCCAGGAGTTTCAAGATAAGAGAAGTAAGCCAACTGATATATTTGCAATTGGCTTTGAAGAAATGGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000130813.3
ENSMUST00000170853.8
ENSMUST00000231472.2
CDS GCA 72 bp AATCTTATGAGTATAACTTCACCAAAGTGTGCAAACTaGCGCAGAAGCTCATCAATCAAAGCATCATCAAAA +
Preference number: 6 (lower is better)
Translates to: NLMSITSPKCAN*RRSSSIKASSK
Trigger: TTTTGATGATGCTTTGATTGATGAGCTTCTGCGGCAGTTTGCACACTTTGGTGAAGTTATACTCATAAGATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8
CDS CCA 72 bp ATTTGTAGAAGTTCTCACACATGTTCTTTAAGACTTTaGAAGATGCTGACTGTAATGTCTGTTCAGAAACAC +
Preference number: 6 (lower is better)
Translates to: ICRSSHTCSLRL*KMLTVMSVQKH
Trigger: GTGTTTCTGAACAGACATTACAGTCAGCATCTTCCAAAGTCTTAAAGAACATGTGTGAGAACTTCTACAAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118390.10
ENSMUST00000121759.8
ENSMUST00000170853.8