Pregenerated sensors for SYNGR4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040231Ensembl transcript IDs: ENSMUST00000039049.16, ENSMUST00000120299.4
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TTGGAGTCGTCATGTAGGGGGACAGGGCTGAGCTGGTGTAACTCAGACTGTTGGGGAGGGGCTGGTGGATaGTGGAGAGAGGGTGTTCAG | + |
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Preference number: 2 (lower is better) Translates to: LESSCRGTGLSWCNSDCWGGAGG*WREGVQ Trigger: CTGAACACCCTCTCTCCATCATCCACCAGCCCCTCC...CCAACAGTCTGAGTTACACCAGCTCAGCCCTGTCCCCCTACATGACGACTCCAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000120299.4 |
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| CDS-3UTR TCA 90 bp | GAGTCGTCATGTAGGGGGACAGGGCTGAGCTGGTGTAACTCAGACTGTTGGGGCCCATGTGGTTGCTGTTaGGGACACAGCGGAGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: ESSCRGTGLSWCNSDCWGPCGCC*GHSGAE Trigger: CTCAGCTCCGCTGTGTCCTCAACAGCAACCACATGG...GCCCCAACAGTCTGAGTTACACCAGCTCAGCCCTGTCCCCCTACATGACGACTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120299.4 |
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| CDS-3UTR TCA 90 bp | TTGGAGTCGTCATGTAGGGGGACAGGGCTGAGCTGGTGTAACTCAGACTGTTGGGGAAGACCAAGCAGCTaGGAAAGGACAGGAAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: LESSCRGTGLSWCNSDCWGRPSS*ERTGSQ Trigger: CTGGCTTCCTGTCCTTTCTCAGCTGCTTGGTCTTCC...CCAACAGTCTGAGTTACACCAGCTCAGCCCTGTCCCCCTACATGACGACTCCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120299.4 |
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| CDS-3UTR TCA 90 bp | GAGTCGTCATGTAGGGGGACAGGGCTGAGCTGGTGTAACTCAGACTGTTGGGGCGAGTATCAGCCAGAATaGAGTCCAAGAGCTGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: ESSCRGTGLSWCNSDCWGEYQPE*SPRAGR Trigger: CCTTCCAGCTCTTGGACTTCATTCTGGCTGATACTC...GCCCCAACAGTCTGAGTTACACCAGCTCAGCCCTGTCCCCCTACATGACGACTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120299.4 |
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| CDS-3UTR GCA 90 bp | TTGGAGTCGTCATGTAGGGGGACAGGGCTGAGCTGGTGTAACTCAGACTGTTGGCACAGTCTCATTGTCTaGCAGGTCGTGGAGGCTTTC | + |
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Preference number: 4 (lower is better) Translates to: LESSCRGTGLSWCNSDCWHSLIV*QVVEAF Trigger: GAAAGCCTCCACGACCTGGCAGACAATGAGACTGTG...CCAACAGTCTGAGTTACACCAGCTCAGCCCTGTCCCCCTACATGACGACTCCAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000120299.4 |
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| CDS-3UTR GCA 90 bp | GAGTCGTCATGTAGGGGGACAGGGCTGAGCTGGTGTAACTCAGACTGTTGGGGCCGAAGATCCTTGAGATaGTCTTTGGTCTCCTCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: ESSCRGTGLSWCNSDCWGRRSLR*SLVSSE Trigger: TTCTGAGGAGACCAAAGAGCATCTCAAGGATCTTCG...GCCCCAACAGTCTGAGTTACACCAGCTCAGCCCTGTCCCCCTACATGACGACTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120299.4 |
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| CDS-3UTR CCA 90 bp | TTGGAGTCGTCATGTAGGGGGACAGGGCTGAGCTGGTGTAACTCAGACTGTTGGAAGCTACAGGCCATGTaGTTGCTGTTGAGGACACAG | + |
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Preference number: 4 (lower is better) Translates to: LESSCRGTGLSWCNSDCWKLQAM*LLLRTQ Trigger: CTGTGTCCTCAACAGCAACCACATGGCCTGTAGCTT...CCAACAGTCTGAGTTACACCAGCTCAGCCCTGTCCCCCTACATGACGACTCCAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000120299.4 |
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| CDS-3UTR CCA 90 bp | GAGTCGTCATGTAGGGGGACAGGGCTGAGCTGGTGTAACTCAGACTGTTGGGGCATGAAGTCCAAGAGCTaGAAGGCTATCTTAAAGCGG | + |
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Preference number: 4 (lower is better) Translates to: ESSCRGTGLSWCNSDCWGMKSKS*KAILKR Trigger: CCGCTTTAAGATAGCCTTCCAGCTCTTGGACTTCAT...GCCCCAACAGTCTGAGTTACACCAGCTCAGCCCTGTCCCCCTACATGACGACTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120299.4 |
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| CDS TCA 90 bp | CAGACTGTTGGGGCCTGTGATGGGAGGGTTGGAGGGGCTGGTGGATaGTGGAGAGAGGGTGTTCAGCACCACACTACCCTCCTCCAGGGA | + |
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Preference number: 5 (lower is better) Translates to: QTVGACDGRVGGAGG*WREGVQHHTTLLQG Trigger: TCCCTGGAGGAGGGTAGTGTGGTGCTGAACACCCTCTCTCCATCATCCACCAGCCCCTCCAACCCTCCCATCACAGGCCCCAACAGTCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039049.16 |
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| CDS-3UTR CAA 90 bp | GAGTCGTCATGTAGGGGGACAGGGCTGAGCTGGTGTAACTCAGACTGTTGGGGCCTACAGGCCATGTGGTaGCTGTTGAGGACACAGCGG | + |
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Preference number: 5 (lower is better) Translates to: ESSCRGTGLSWCNSDCWGLQAMW*LLRTQR Trigger: CCGCTGTGTCCTCAACAGCAACCACATGGCCTGTAG...GCCCCAACAGTCTGAGTTACACCAGCTCAGCCCTGTCCCCCTACATGACGACTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120299.4 |
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| CDS CCA 90 bp | AGGCCTGGAGTATCCAGACAGGGACGGAGAAGAAAGAAAAGGCAATaGCTGCCTTGGCGCTGCTGTTCCCCAAGAGGAAGTGCTTGGACT | + |
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Preference number: 5 (lower is better) Translates to: RPGVSRQGRRRKKRQ*LPWRCCSPRGSAWT Trigger: AGTCCAAGCACTTCCTCTTGGGGAACAGCAGCGCCAAGGCAGCCATTGCCTTTTCTTTCTTCTCCGTCCCTGTCTGGATACTCCAGGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039049.16 |
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| CDS TCA 90 bp | GGAAGCCAGCTCCTACTGCAAAGCTACAGGCCATGTGGTTGCTGTTaGGGACACAGCGGAGCTGAGGAGACTCTGTTCTGTTCTGGTAAC | + |
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Preference number: 5 (lower is better) Translates to: GSQLLLQSYRPCGCC*GHSGAEETLFCSGN Trigger: GTTACCAGAACAGAACAGAGTCTCCTCAGCTCCGCTGTGTCCTCAACAGCAACCACATGGCCTGTAGCTTTGCAGTAGGAGCTGGCTTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039049.16 ENSMUST00000120299.4 |
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| CDS GCA 90 bp | CTGGAGTATCCAGACAGGGACGGAGAAGAAAGAAAAGGCAATGGCTaGCTTGGCGCTGCTGTTCCCCAAGAGGAAGTGCTTGGACTTCGA | + |
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Preference number: 5 (lower is better) Translates to: LEYPDRDGEERKGNG*LGAAVPQEEVLGLR Trigger: TCGAAGTCCAAGCACTTCCTCTTGGGGAACAGCAGCGCCAAGGCAGCCATTGCCTTTTCTTTCTTCTCCGTCCCTGTCTGGATACTCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039049.16 |
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| CDS CCA 90 bp | GTATCCAGACAGGGACGGAGAAGAAAGAAAAGGCAATGGCTGCCTTaGCGCTGCTGTTCCCCAAGAGGAAGTGCTTGGACTTCGAATGCT | + |
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Preference number: 5 (lower is better) Translates to: VSRQGRRRKKRQWLP*RCCSPRGSAWTSNA Trigger: AGCATTCGAAGTCCAAGCACTTCCTCTTGGGGAACAGCAGCGCCAAGGCAGCCATTGCCTTTTCTTTCTTCTCCGTCCCTGTCTGGATAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039049.16 |
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| CDS-3UTR CAA 90 bp | TTGGAGTCGTCATGTAGGGGGACAGGGCTGAGCTGGTGTAACTCAGACTGTTGGTCCTTGAGATGCTCTTaGGTCTCCTCAGAAAGCGCA | + |
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Preference number: 5 (lower is better) Translates to: LESSCRGTGLSWCNSDCWSLRCS*VSSESA Trigger: TGCGCTTTCTGAGGAGACCAAAGAGCATCTCAAGGA...CCAACAGTCTGAGTTACACCAGCTCAGCCCTGTCCCCCTACATGACGACTCCAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000120299.4 |
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| CDS GCA 72 bp | ATGGCTGCCTTGGCGCTGCTGTTCCCCAAGAGGAAGTaGTTGGACTTCGAATGCTGCCACTGGCTGGCTAGG | + |
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Preference number: 6 (lower is better) Translates to: MAALALLFPKRK*LDFECCHWLAR Trigger: CCTAGCCAGCCAGTGGCAGCATTCGAAGTCCAAGCACTTCCTCTTGGGGAACAGCAGCGCCAAGGCAGCCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039049.16 |
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| CDS CCA 72 bp | AGGCCTGGAGTATCAGCCAGAATGAAGTCCAAGAGCTaGAAGGCTATCTTAAAGCGGGTGCCCACGAGGCGC | + |
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Preference number: 6 (lower is better) Translates to: RPGVSARMKSKS*KAILKRVPTRR Trigger: GCGCCTCGTGGGCACCCGCTTTAAGATAGCCTTCCAGCTCTTGGACTTCATTCTGGCTGATACTCCAGGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120299.4 |
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| CDS GCA 72 bp | CCAGACAGGGACGGAGAAGAAAGAAAAGGCAATGGCTaGCTTGGCGCTGCTGTTCCCCAAGAGGAAGTGCTT | + |
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Preference number: 6 (lower is better) Translates to: PDRDGEERKGNG*LGAAVPQEEVL Trigger: AAGCACTTCCTCTTGGGGAACAGCAGCGCCAAGGCAGCCATTGCCTTTTCTTTCTTCTCCGTCCCTGTCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039049.16 |
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| CDS CCA 72 bp | CAGGGACGGAGAAGAAAGAAAAGGCAATGGCTGCCTTaGCGCTGCTGTTCCCCAAGAGGAAGTGCTTGGACT | + |
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Preference number: 6 (lower is better) Translates to: QGRRRKKRQWLP*RCCSPRGSAWT Trigger: AGTCCAAGCACTTCCTCTTGGGGAACAGCAGCGCCAAGGCAGCCATTGCCTTTTCTTTCTTCTCCGTCCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039049.16 |
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| CDS CAA 72 bp | ACAGGGACGGAGAAGAAAGAAAAGGCAATGGCTGCCTaGGCGCTGCTGTTCCCCAAGAGGAAGTGCTTGGAC | + |
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Preference number: 6 (lower is better) Translates to: TGTEKKEKAMAA*ALLFPKRKCLD Trigger: GTCCAAGCACTTCCTCTTGGGGAACAGCAGCGCCAAGGCAGCCATTGCCTTTTCTTTCTTCTCCGTCCCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039049.16 |
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| CDS TCA 72 bp | CTCCTACTGCAAAGCTACAGGCCATGTGGTTGCTGTTaGGGACACAGCGGAGCTGAGGAGACTCTGTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: LLLQSYRPCGCC*GHSGAEETLFC Trigger: ACAGAACAGAGTCTCCTCAGCTCCGCTGTGTCCTCAACAGCAACCACATGGCCTGTAGCTTTGCAGTAGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039049.16 ENSMUST00000120299.4 |
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| CDS TCA 72 bp | TCTCATAGGCATCTATGGCAAGGAAGACCAAGCAGCTaGGAAAGGACAGGAAGCCAGCTCCTACTGCAAAGC | + |
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Preference number: 6 (lower is better) Translates to: SHRHLWQGRPSS*ERTGSQLLLQS Trigger: GCTTTGCAGTAGGAGCTGGCTTCCTGTCCTTTCTCAGCTGCTTGGTCTTCCTTGCCATAGATGCCTATGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039049.16 ENSMUST00000120299.4 |
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