Pregenerated sensors for SYNE4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019737Ensembl transcript IDs: ENSMUST00000054594.15, ENSMUST00000176304.8, ENSMUST00000176504.8, ENSMUST00000176789.8, ENSMUST00000177078.8
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGCTGGGACCCCGCGATCCACTTCCAGCATTGCATCAGGCAGACTaGGGGATACTTGCCTCTTCCTGTCCTGAGGCTTCCGGAGCCGCC | + |
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Preference number: 1 (lower is better) Translates to: ELGPRDPLPALHQAD*GILASSCPEASGAA Trigger: GGCGGCTCCGGAAGCCTCAGGACAGGAAGAGGCAAGTATCCCCCAGTCTGCCTGATGCAATGCTGGAAGTGGATCGCGGGGTCCCAGCTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176789.8 |
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| 3UTR GCA 90 bp | CCGCTTGGATGCAGGAGCTGGGACCCCGCGATCCACTTCCAGCATTaGATCAGGCAGACTGGGGGATACTTGCCTCTTCCTGTCCTGAGG | + |
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Preference number: 1 (lower is better) Translates to: PLGCRSWDPAIHFQH*IRQTGGYLPLPVLR Trigger: CCTCAGGACAGGAAGAGGCAAGTATCCCCCAGTCTGCCTGATGCAATGCTGGAAGTGGATCGCGGGGTCCCAGCTCCTGCATCCAAGCGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000176789.8 |
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| 3UTR CCA 90 bp | GAAAGTGACCATTTAATGCACGTGTCTTGGATGGTGGGCTCAGATTaGAGGGAGACCATTGACATAACTGAGCACCAGGTAGGGCGTCCT | + |
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Preference number: 1 (lower is better) Translates to: ESDHLMHVSWMVGSD*RETIDITEHQVGRP Trigger: AGGACGCCCTACCTGGTGCTCAGTTATGTCAATGGTCTCCCTCCAATCTGAGCCCACCATCCAAGACACGTGCATTAAATGGTCACTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176789.8 |
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| 3UTR-3UTR GCA 90 bp | GCCGGGCATGAGAACAGCAGGAGACCCCCGACAAGGGCAGCAACAGCGTGGCACCAGGGGCCGCTTGGATaGAGGAGCTGGGACCCCGCG | + |
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Preference number: 2 (lower is better) Translates to: AGHENSRRPPTRAATAWHQGPLG*RSWDPA Trigger: CGCGGGGTCCCAGCTCCTGCATCCAAGCGGCCCCTG...GTGCCACGCTGTTGCTGCCCTTGTCGGGGGTCTCCTGCTGTTCTCATGCCCGGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000176789.8 |
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| 3UTR-3UTR CCA 90 bp | CATGAGAACAGCAGGAGACCCCCGACAAGGGCAGCAACAGCGTGGCACCCACCAGGGTCAGGGGCCGCTTaGATGCAGGAGCTGGGACCC | + |
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Preference number: 2 (lower is better) Translates to: HENSRRPPTRAATAWHPPGSGAA*MQELGP Trigger: GGGTCCCAGCTCCTGCATCCAAGCGGCCCCTGACCC...TGGTGGGTGCCACGCTGTTGCTGCCCTTGTCGGGGGTCTCCTGCTGTTCTCATG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000176789.8 |
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| 3UTR-3UTR CCA 90 bp | GGAGAAAGAAGAGGGTCAGGGGCCGCTTGGATGCAGGAGCTGGGACCCCGCGATTTGCATCAGGCAGACTaGGGGATACTTGCCTCTTCC | + |
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Preference number: 2 (lower is better) Translates to: GERRGSGAAWMQELGPRDLHQAD*GILASS Trigger: GGAAGAGGCAAGTATCCCCCAGTCTGCCTGATGCAA...ATCGCGGGGTCCCAGCTCCTGCATCCAAGCGGCCCCTGACCCTCTTCTTTCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000176789.8 |
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| 3UTR-3UTR CCA 90 bp | GATTGGAGGGAGACCATTGACATAACTGAGCACCAGGTAGGGCGTCCTAGCCAGAGGGCAGCAACAGCGTaGCACCCACCAGAAGGAGGA | + |
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Preference number: 2 (lower is better) Translates to: DWRETIDITEHQVGRPSQRAATA*HPPEGG Trigger: TCCTCCTTCTGGTGGGTGCCACGCTGTTGCTGCCCT...CTGGCTAGGACGCCCTACCTGGTGCTCAGTTATGTCAATGGTCTCCCTCCAATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176789.8 |
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| 3UTR CCA 72 bp | AAAGAAGAGGGTCAGGGGCCGCTTGGATGCAGGAGCTaGGACCCCGCGATCCACTTCCAGCATTGCATCAGG | + |
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Preference number: 3 (lower is better) Translates to: KEEGQGPLGCRS*DPAIHFQHCIR Trigger: CCTGATGCAATGCTGGAAGTGGATCGCGGGGTCCCAGCTCCTGCATCCAAGCGGCCCCTGACCCTCTTCTTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176789.8 |
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| 3UTR CCA 72 bp | CATTTAATGCACGTGTCTTGGATGGTGGGCTCAGATTaGAGGGAGACCATTGACATAACTGAGCACCAGGTA | + |
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Preference number: 3 (lower is better) Translates to: HLMHVSWMVGSD*RETIDITEHQV Trigger: TACCTGGTGCTCAGTTATGTCAATGGTCTCCCTCCAATCTGAGCCCACCATCCAAGACACGTGCATTAAATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176789.8 |
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| CDS GCA 90 bp | CGTTGGAAGATGGTGTCTCGGTGGGTTCCAAGGGCCCTCAGGACCTaGTCCAGGGATGCCCAGGCCCTGGGCTCACTCCTCTCTGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: RWKMVSRWVPRALRT*SRDAQALGSLLSAR Trigger: CCTGGCAGAGAGGAGTGAGCCCAGGGCCTGGGCATCCCTGGAGCAGGTCCTGAGGGCCCTTGGAACCCACCGAGACACCATCTTCCAACG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054594.15 ENSMUST00000176304.8 ENSMUST00000176504.8 ENSMUST00000177078.8 |
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| CDS CCA 90 bp | ACGCGCTCAGCGGCCCCTCGTAGCTCTGCCTGCAGGGCCTGCATCTaGACAATCCTGTTGTGGGCCAGCGTCCAAGACCCAAGGCCTCGT | + |
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Preference number: 5 (lower is better) Translates to: TRSAAPRSSACRACI*TILLWASVQDPRPR Trigger: ACGAGGCCTTGGGTCTTGGACGCTGGCCCACAACAGGATTGTCCAGATGCAGGCCCTGCAGGCAGAGCTACGAGGGGCCGCTGAGCGCGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000054594.15 ENSMUST00000176304.8 ENSMUST00000176504.8 |
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| CDS CCA 90 bp | AACTGGGCCTGCAGCTGCCAGAGCCGTTGGAAGATGGTGTCTCGGTaGGTTCCAAGGGCCCTCAGGACCTGCTCCAGGGATGCCCAGGCC | + |
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Preference number: 5 (lower is better) Translates to: NWACSCQSRWKMVSR*VPRALRTCSRDAQA Trigger: GGCCTGGGCATCCCTGGAGCAGGTCCTGAGGGCCCTTGGAACCCACCGAGACACCATCTTCCAACGGCTCTGGCAGCTGCAGGCCCAGTT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054594.15 ENSMUST00000176304.8 ENSMUST00000176504.8 ENSMUST00000177078.8 |
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| CDS TCA 90 bp | ACTGGGTGCCCAGGGCCCCCAGACTCCACCAGCTGCTGGCCCGTCTaGGTCTCCCTCAACTTCCAAGTCCTGGTCCAGGAGGTTGGCCTT | + |
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Preference number: 5 (lower is better) Translates to: TGCPGPPDSTSCWPV*VSLNFQVLVQEVGL Trigger: AAGGCCAACCTCCTGGACCAGGACTTGGAAGTTGAGGGAGACTCAGACGGGCCAGCAGCTGGTGGAGTCTGGGGGCCCTGGGCACCCAGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000054594.15 ENSMUST00000176504.8 ENSMUST00000177078.8 |
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| CDS TCA 90 bp | CAAGGAGAGCAGGTCCTTGTGGGGCCCAGCCAAGTAGGGAGCCTTTaGGGCGGGGCTGATCTCACCTCAAGGCCCTGTCCACTGCTCTGG | + |
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Preference number: 5 (lower is better) Translates to: QGEQVLVGPSQVGSL*GGADLTSRPCPLLW Trigger: CCAGAGCAGTGGACAGGGCCTTGAGGTGAGATCAGCCCCGCCTCAAAGGCTCCCTACTTGGCTGGGCCCCACAAGGACCTGCTCTCCTTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176789.8 |
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| CDS CCA 90 bp | CCTCGTAGCTCTGCCTGCAGGGCCTGCATCTGGACAATCCTGTTGTaGGCCAGCGTCCAAGACCCAAGGCCTCGTTCCAGGTCCTGCAGC | + |
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Preference number: 5 (lower is better) Translates to: PRSSACRACIWTILL*ASVQDPRPRSRSCS Trigger: GCTGCAGGACCTGGAACGAGGCCTTGGGTCTTGGACGCTGGCCCACAACAGGATTGTCCAGATGCAGGCCCTGCAGGCAGAGCTACGAGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054594.15 ENSMUST00000176304.8 |
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| CDS GCA 90 bp | GGGAAGAGGCCAGGGGGAGTCTTGAGGGGCTGGTGGCAGACTCAGTaGTCTTCAGTTCACCCATGCAATGCTCAGGCAGGCCCAAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: GKRPGGVLRGWWQTQ*SSVHPCNAQAGPRR Trigger: CCTCCTTGGGCCTGCCTGAGCATTGCATGGGTGAACTGAAGAGCACTGAGTCTGCCACCAGCCCCTCAAGACTCCCCCTGGCCTCTTCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000054594.15 ENSMUST00000176304.8 ENSMUST00000176504.8 ENSMUST00000177078.8 |
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| CDS CCA 90 bp | CCTCGTAGCTCTGCCTGCAGGGCCTGCATCTGGACAATCCTGTTGTaGGCCAGCGTCCAAGACCCAAGGCCTCGTTCCAGGTCCTCACAG | + |
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Preference number: 5 (lower is better) Translates to: PRSSACRACIWTILL*ASVQDPRPRSRSSQ Trigger: CTGTGAGGACCTGGAACGAGGCCTTGGGTCTTGGACGCTGGCCCACAACAGGATTGTCCAGATGCAGGCCCTGCAGGCAGAGCTACGAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176504.8 |
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| CDS GCA 90 bp | CAAGGAGGCCTGGACCTGCTCTGGCCTGCTTGTCTCTTCCTCAGGTaGAGGGCAGATGGTCCCTCCGACAACATCCAGCTCTCTAGGAGC | + |
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Preference number: 5 (lower is better) Translates to: QGGLDLLWPACLFLR*RADGPSDNIQLSRS Trigger: GCTCCTAGAGAGCTGGATGTTGTCGGAGGGACCATCTGCCCTGCACCTGAGGAAGAGACAAGCAGGCCAGAGCAGGTCCAGGCCTCCTTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054594.15 ENSMUST00000176304.8 ENSMUST00000176504.8 ENSMUST00000177078.8 |
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| CDS GCA 90 bp | AGTTCACCCATGCAATGCTCAGGCAGGCCCAAGGAGGCCTGGACCTaGTCTGGCCTGCTTGTCTCTTCCTCAGGTGCAGGGCAGATGGTC | + |
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Preference number: 5 (lower is better) Translates to: SSPMQCSGRPKEAWT*SGLLVSSSGAGQMV Trigger: GACCATCTGCCCTGCACCTGAGGAAGAGACAAGCAGGCCAGAGCAGGTCCAGGCCTCCTTGGGCCTGCCTGAGCATTGCATGGGTGAACT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054594.15 ENSMUST00000176304.8 ENSMUST00000176504.8 ENSMUST00000177078.8 |
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| CDS TCA 90 bp | GTTTCCGGTGGCCAAGCCCCAAGGAGAGCAGGTCCAGGCTATAGCTaGTCAACTGGGCCTGCAGCTGCCAGAGCCGTTGGAAGATGGTGT | + |
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Preference number: 5 (lower is better) Translates to: VSGGQAPRRAGPGYS*STGPAAARAVGRWC Trigger: ACACCATCTTCCAACGGCTCTGGCAGCTGCAGGCCCAGTTGATCAGCTATAGCCTGGACCTGCTCTCCTTGGGGCTTGGCCACCGGAAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176304.8 |
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| CDS TCA 90 bp | AGTCCTGGTCCAGGAGGTTGGCCTTCTCAAGCACCAGGCTATAGCTaGTCAACTGGGCCTGCAGCTGCCAGAGCCGTTGGAAGATGGTGT | + |
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Preference number: 5 (lower is better) Translates to: SPGPGGWPSQAPGYS*STGPAAARAVGRWC Trigger: ACACCATCTTCCAACGGCTCTGGCAGCTGCAGGCCCAGTTGATCAGCTATAGCCTGGTGCTTGAGAAGGCCAACCTCCTGGACCAGGACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054594.15 ENSMUST00000176504.8 ENSMUST00000177078.8 |
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| CDS CCA 90 bp | CTTGATGCTCATGGGAAGAGGCCAGGGGGAGTCTTGAGGGGCTGGTaGCAGACTCAGTGCTCTTCAGTTCACCCATGCAATGCTCAGGCA | + |
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Preference number: 5 (lower is better) Translates to: LDAHGKRPGGVLRGW*QTQCSSVHPCNAQA Trigger: TGCCTGAGCATTGCATGGGTGAACTGAAGAGCACTGAGTCTGCCACCAGCCCCTCAAGACTCCCCCTGGCCTCTTCCCATGAGCATCAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000054594.15 ENSMUST00000176304.8 ENSMUST00000176504.8 ENSMUST00000177078.8 |
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| CDS CCA 90 bp | CGTCTTGATGCTCATGGGAAGAGGCCAGGGGGAGTCTTGAGGGGCTaGTGGCAGACTCAGTGCTCTTCAGTTCACCCATGCAATGCTCAG | + |
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Preference number: 5 (lower is better) Translates to: RLDAHGKRPGGVLRG*WQTQCSSVHPCNAQ Trigger: CTGAGCATTGCATGGGTGAACTGAAGAGCACTGAGTCTGCCACCAGCCCCTCAAGACTCCCCCTGGCCTCTTCCCATGAGCATCAAGACG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000054594.15 ENSMUST00000176304.8 ENSMUST00000176504.8 ENSMUST00000177078.8 |
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| CDS TCA 72 bp | GGGGCCCAGCCAAGTAGGGAGCCTTTGAGGCGGGGCTaGTCTCACCTCAAGGCCCTGTCCACTGCTCTGGGG | + |
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Preference number: 6 (lower is better) Translates to: GAQPSREPLRRG*SHLKALSTALG Trigger: CCCCAGAGCAGTGGACAGGGCCTTGAGGTGAGATCAGCCCCGCCTCAAAGGCTCCCTACTTGGCTGGGCCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176789.8 |
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| CDS GCA 72 bp | CCCCTCGTAGCTCTGCCTGCAGGGCCTCACAGGGCTTaGCCCCGTCTTGATGCTCATGGGAAGAGGCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: PLVALPAGPHRA*PRLDAHGKRPG Trigger: CCCTGGCCTCTTCCCATGAGCATCAAGACGGGGGCAAGCCCTGTGAGGCCCTGCAGGCAGAGCTACGAGGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177078.8 |
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| CDS TCA 72 bp | CCAGGGCCCCCAGACTCCACCAGCTGCTGGCCCGTCTaGGTCTCCCTCAACTTCCAAGTCCTGGTCCAGGAG | + |
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Preference number: 6 (lower is better) Translates to: PGPPDSTSCWPV*VSLNFQVLVQE Trigger: CTCCTGGACCAGGACTTGGAAGTTGAGGGAGACTCAGACGGGCCAGCAGCTGGTGGAGTCTGGGGGCCCTGG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000054594.15 ENSMUST00000176504.8 ENSMUST00000177078.8 |
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| CDS CCA 72 bp | GCGGCCCCTCGTAGCTCTGCCTGCAGGGCCTGCATCTaGACAATCCTGTTGTGGGCCAGCGTCCAAGACCCA | + |
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Preference number: 6 (lower is better) Translates to: AAPRSSACRACI*TILLWASVQDP Trigger: TGGGTCTTGGACGCTGGCCCACAACAGGATTGTCCAGATGCAGGCCCTGCAGGCAGAGCTACGAGGGGCCGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000054594.15 ENSMUST00000176304.8 ENSMUST00000176504.8 |
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| CDS CAA 72 bp | GCAGGCCCAAGGAGGCCTGGACCTGCTCTGGCCTGCTaGTCTCTTCCTCAGGTGCAGGGCAGATGGTCCCTC | + |
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Preference number: 6 (lower is better) Translates to: AGPRRPGPALAC*SLPQVQGRWSL Trigger: GAGGGACCATCTGCCCTGCACCTGAGGAAGAGACAAGCAGGCCAGAGCAGGTCCAGGCCTCCTTGGGCCTGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054594.15 ENSMUST00000176304.8 ENSMUST00000176504.8 ENSMUST00000177078.8 |
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| CDS TCA 72 bp | TCTGCCTGCAGGGCCTCACAGGGCTTGCCCCCGTCTTaGTGCTCATGGGAAGAGGCCAGGGGGAGTCTTGAG | + |
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Preference number: 6 (lower is better) Translates to: SACRASQGLPPS*CSWEEARGSLE Trigger: CTCAAGACTCCCCCTGGCCTCTTCCCATGAGCATCAAGACGGGGGCAAGCCCTGTGAGGCCCTGCAGGCAGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000177078.8 |
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| CDS CAA 90 bp | GCCCCTCGTAGCTCTGCCTGCAGGGCCTGCATCTGGACAATCCTGTaGTGGGCCAGCGTCCAAGACCCAAGGCCTCGTTCCAGGTCCTCA | + |
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Preference number: 6 (lower is better) Translates to: APRSSACRACIWTIL*WASVQDPRPRSRSS Trigger: TGAGGACCTGGAACGAGGCCTTGGGTCTTGGACGCTGGCCCACAACAGGATTGTCCAGATGCAGGCCCTGCAGGCAGAGCTACGAGGGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176504.8 |
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| CDS TCA 72 bp | GGCCAAGCCCCAAGGAGAGCAGGTCCAGGCTATAGCTaGTCAACTGGGCCTGCAGCTGCCAGAGCCGTTGGA | + |
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Preference number: 6 (lower is better) Translates to: GQAPRRAGPGYS*STGPAAARAVG Trigger: TCCAACGGCTCTGGCAGCTGCAGGCCCAGTTGATCAGCTATAGCCTGGACCTGCTCTCCTTGGGGCTTGGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176304.8 |
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| CDS GCA 72 bp | AAGACCCAAGGCCTCGTTCCAGGTCCTCACAGGGCTTaGCCCCGTCTTGATGCTCATGGGAAGAGGCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: KTQGLVPGPHRA*PRLDAHGKRPG Trigger: CCCTGGCCTCTTCCCATGAGCATCAAGACGGGGGCAAGCCCTGTGAGGACCTGGAACGAGGCCTTGGGTCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176504.8 |
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| CDS CCA 72 bp | ATGCTCAGGCAGGCCCAAGGAGGCCTGGACCTGCTCTaGCCTGCTTGTCTCTTCCTCAGGTGCAGGGCAGAT | + |
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Preference number: 6 (lower is better) Translates to: MLRQAQGGLDLL*PACLFLRCRAD Trigger: ATCTGCCCTGCACCTGAGGAAGAGACAAGCAGGCCAGAGCAGGTCCAGGCCTCCTTGGGCCTGCCTGAGCAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054594.15 ENSMUST00000176304.8 ENSMUST00000176504.8 ENSMUST00000177078.8 |
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| CDS CCA 72 bp | TCTGCCTGCAGGGCCTGCATCTGGACAATCCTGTTGTaGGCCAGCGTCCAAGACCCAAGGCCTCGTTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: SACRACIWTILL*ASVQDPRPRSR Trigger: CCTGGAACGAGGCCTTGGGTCTTGGACGCTGGCCCACAACAGGATTGTCCAGATGCAGGCCCTGCAGGCAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054594.15 ENSMUST00000176304.8 ENSMUST00000176504.8 |
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| CDS CCA 72 bp | TGCAGCTGCCAGAGCCGTTGGAAGATGGTGTCTCGGTaGGTTCCAAGGGCCCTCAGGACCTGCTCCAGGGAT | + |
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Preference number: 6 (lower is better) Translates to: CSCQSRWKMVSR*VPRALRTCSRD Trigger: ATCCCTGGAGCAGGTCCTGAGGGCCCTTGGAACCCACCGAGACACCATCTTCCAACGGCTCTGGCAGCTGCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054594.15 ENSMUST00000176304.8 ENSMUST00000176504.8 ENSMUST00000177078.8 |
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| CDS CAA 90 bp | CACCAGGCTATAGCTGATCAACTGGGCCTGCAGCTGCCAGAGCCGTaGGAAGATGGTGTCTCGGTGGGTTCCAAGGGCCCTCAGGACCTG | + |
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Preference number: 6 (lower is better) Translates to: HQAIADQLGLQLPEP*EDGVSVGSKGPQDL Trigger: CAGGTCCTGAGGGCCCTTGGAACCCACCGAGACACCATCTTCCAACGGCTCTGGCAGCTGCAGGCCCAGTTGATCAGCTATAGCCTGGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054594.15 ENSMUST00000176504.8 ENSMUST00000177078.8 |
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| CDS CAA 90 bp | GTCCAGGCTATAGCTGATCAACTGGGCCTGCAGCTGCCAGAGCCGTaGGAAGATGGTGTCTCGGTGGGTTCCAAGGGCCCTCAGGACCTG | + |
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Preference number: 6 (lower is better) Translates to: VQAIADQLGLQLPEP*EDGVSVGSKGPQDL Trigger: CAGGTCCTGAGGGCCCTTGGAACCCACCGAGACACCATCTTCCAACGGCTCTGGCAGCTGCAGGCCCAGTTGATCAGCTATAGCCTGGAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176304.8 |
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| CDS TCA 72 bp | CCAGAGTCAGAGTGCTCACAGGGCTTGCCCCCGTCTTaGTGCTCATGGGAAGAGGCCAGGGGGAGTCTTGAG | + |
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Preference number: 6 (lower is better) Translates to: PESECSQGLPPS*CSWEEARGSLE Trigger: CTCAAGACTCCCCCTGGCCTCTTCCCATGAGCATCAAGACGGGGGCAAGCCCTGTGAGCACTCTGACTCTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000054594.15 ENSMUST00000176304.8 |
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| CDS GCA 72 bp | CCAGGGGGAGTCTTGAGGGGCTGGTGGCAGACTCAGTaGTCTTCAGTTCACCCATGCAATGCTCAGGCAGGC | + |
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Preference number: 6 (lower is better) Translates to: PGGVLRGWWQTQ*SSVHPCNAQAG Trigger: GCCTGCCTGAGCATTGCATGGGTGAACTGAAGAGCACTGAGTCTGCCACCAGCCCCTCAAGACTCCCCCTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000054594.15 ENSMUST00000176304.8 ENSMUST00000176504.8 ENSMUST00000177078.8 |
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| CDS CCA 72 bp | GCTCATGGGAAGAGGCCAGGGGGAGTCTTGAGGGGCTaGTGGCAGACTCAGTGCTCTTCAGTTCACCCATGC | + |
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Preference number: 6 (lower is better) Translates to: AHGKRPGGVLRG*WQTQCSSVHPC Trigger: GCATGGGTGAACTGAAGAGCACTGAGTCTGCCACCAGCCCCTCAAGACTCCCCCTGGCCTCTTCCCATGAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000054594.15 ENSMUST00000176304.8 ENSMUST00000176504.8 ENSMUST00000177078.8 |
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| CDS TCA 72 bp | CCAGGAGGTTGGCCTTCTCAAGCACCAGGCTATAGCTaGTCAACTGGGCCTGCAGCTGCCAGAGCCGTTGGA | + |
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Preference number: 6 (lower is better) Translates to: PGGWPSQAPGYS*STGPAAARAVG Trigger: TCCAACGGCTCTGGCAGCTGCAGGCCCAGTTGATCAGCTATAGCCTGGTGCTTGAGAAGGCCAACCTCCTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054594.15 ENSMUST00000176504.8 ENSMUST00000177078.8 |
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| CDS CAA 72 bp | ATAGCTGATCAACTGGGCCTGCAGCTGCCAGAGCCGTaGGAAGATGGTGTCTCGGTGGGTTCCAAGGGCCCT | + |
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Preference number: 6 (lower is better) Translates to: IADQLGLQLPEP*EDGVSVGSKGP Trigger: AGGGCCCTTGGAACCCACCGAGACACCATCTTCCAACGGCTCTGGCAGCTGCAGGCCCAGTTGATCAGCTAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000054594.15 ENSMUST00000176304.8 ENSMUST00000176504.8 ENSMUST00000177078.8 |
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| CDS CCA 72 bp | CATGGGAAGAGGCCAGGGGGAGTCTTGAGGGGCTGGTaGCAGACTCAGTGCTCTTCAGTTCACCCATGCAAT | + |
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Preference number: 6 (lower is better) Translates to: HGKRPGGVLRGW*QTQCSSVHPCN Trigger: ATTGCATGGGTGAACTGAAGAGCACTGAGTCTGCCACCAGCCCCTCAAGACTCCCCCTGGCCTCTTCCCATG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000054594.15 ENSMUST00000176304.8 ENSMUST00000176504.8 ENSMUST00000177078.8 |
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| CDS GCA 72 bp | GCCAGCGTCCAAGACCCAAGGCCTCGTTCCAGGTCCTaGAGCCGGAAGTTCAACCTCAACAGACAAAGATGT | + |
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Preference number: 6 (lower is better) Translates to: ASVQDPRPRSRS*SRKFNLNRQRC Trigger: ACATCTTTGTCTGTTGAGGTTGAACTTCCGGCTGCAGGACCTGGAACGAGGCCTTGGGTCTTGGACGCTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054594.15 ENSMUST00000176304.8 |
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