RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SYNE3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000054150

Ensembl transcript IDs: ENSMUST00000067005.11, ENSMUST00000095439.11, ENSMUST00000109927.2

Found 435 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCAGCCTTGGGCATAACCTGGAATCACCCAGATGCCTCCCACCTGTaGCTGGAGCTGCCTTTGCCTGCTCCTGCCTGGGGTCAGACTGTG +
Preference number: 1 (lower is better)
Translates to: PALGITWNHPDASHL*LELPLPAPAWGQTV
Trigger: CACAGTCTGACCCCAGGCAGGAGCAGGCAAAGGCAGCTCCAGGCACAGGTGGGAGGCATCTGGGTGATTCCAGGTTATGCCCAAGGCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR TCA 90 bp GCACAGTCCCTTCTTGGAAGGGAAGAGAGGCCCCTTCAGATGGCCTaGGTTTCTCCTCTCTGCTTAGGGTGGACCTCCTGGCCTGGTGGG +
Preference number: 1 (lower is better)
Translates to: AQSLLGREERPLQMA*VSPLCLGWTSWPGG
Trigger: CCCACCAGGCCAGGAGGTCCACCCTAAGCAGAGAGGAGAAACTCAGGCCATCTGAAGGGGCCTCTCTTCCCTTCCAAGAAGGGACTGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR GCA 90 bp TGGTGGGCAAGCATTTCCACTCTGCTCTCAGCTCATGCCCTAGGCTaGAGACAGCTCAACAGCTGTGTACAGTGGCACGGGCCTCCCAGG +
Preference number: 1 (lower is better)
Translates to: WWASISTLLSAHALG*RQLNSCVQWHGPPR
Trigger: CCTGGGAGGCCCGTGCCACTGTACACAGCTGTTGAGCTGTCTGCAGCCTAGGGCATGAGCTGAGAGCAGAGTGGAAATGCTTGCCCACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR GCA 90 bp CCTCCTGGCCTGGTGGGCAAGCATTTCCACTCTGCTCTCAGCTCATaGCCTAGGCTGCAGACAGCTCAACAGCTGTGTACAGTGGCACGG +
Preference number: 1 (lower is better)
Translates to: PPGLVGKHFHSALSS*PRLQTAQQLCTVAR
Trigger: CCGTGCCACTGTACACAGCTGTTGAGCTGTCTGCAGCCTAGGGCATGAGCTGAGAGCAGAGTGGAAATGCTTGCCCACCAGGCCAGGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 90 bp GGCCTGAGTTTCTCCTCTCTGCTTAGGGTGGACCTCCTGGCCTGGTaGGCAAGCATTTCCACTCTGCTCTCAGCTCATGCCCTAGGCTGC +
Preference number: 1 (lower is better)
Translates to: GLSFSSLLRVDLLAW*ASISTLLSAHALGC
Trigger: GCAGCCTAGGGCATGAGCTGAGAGCAGAGTGGAAATGCTTGCCCACCAGGCCAGGAGGTCCACCCTAAGCAGAGAGGAGAAACTCAGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 90 bp GATGGCCTGAGTTTCTCCTCTCTGCTTAGGGTGGACCTCCTGGCCTaGTGGGCAAGCATTTCCACTCTGCTCTCAGCTCATGCCCTAGGC +
Preference number: 1 (lower is better)
Translates to: DGLSFSSLLRVDLLA*WASISTLLSAHALG
Trigger: GCCTAGGGCATGAGCTGAGAGCAGAGTGGAAATGCTTGCCCACCAGGCCAGGAGGTCCACCCTAAGCAGAGAGGAGAAACTCAGGCCATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 90 bp GACCTGCCCAGCCTTGTAGACCCACCAGCCTGCACAGTCCCTTCTTaGAAGGGAAGAGAGGCCCCTTCAGATGGCCTGAGTTTCTCCTCT +
Preference number: 1 (lower is better)
Translates to: DLPSLVDPPACTVPS*KGREAPSDGLSFSS
Trigger: AGAGGAGAAACTCAGGCCATCTGAAGGGGCCTCTCTTCCCTTCCAAGAAGGGACTGTGCAGGCTGGTGGGTCTACAAGGCTGGGCAGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 90 bp CATCCCTCTGGCACGCATCTTGTCTCACTGCTCTGGCTAAGCCAGTaGCCCACCATCACGGCTTCTCTTTATCTAGCCCACGGCCCAAGT +
Preference number: 1 (lower is better)
Translates to: HPSGTHLVSLLWLSQ*PTITASLYLAHGPS
Trigger: ACTTGGGCCGTGGGCTAGATAAAGAGAAGCCGTGATGGTGGGCCACTGGCTTAGCCAGAGCAGTGAGACAAGATGCGTGCCAGAGGGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 90 bp TCATCCCAGAATTCCCTGGTTATGTGTCCAGCCTTGGGCATAACCTaGAATCACCCAGATGCCTCCCACCTGTGCCTGGAGCTGCCTTTG +
Preference number: 1 (lower is better)
Translates to: SSQNSLVMCPALGIT*NHPDASHLCLELPL
Trigger: CAAAGGCAGCTCCAGGCACAGGTGGGAGGCATCTGGGTGATTCCAGGTTATGCCCAAGGCTGGACACATAACCAGGGAATTCTGGGATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 90 bp CTGATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTGACTaGGGTTACAGACAAAGTCAGGGTCACGAGCCCCAAGACACTGCT +
Preference number: 1 (lower is better)
Translates to: LISQQSGQVQRGLCD*GYRQSQGHEPQDTA
Trigger: AGCAGTGTCTTGGGGCTCGTGACCCTGACTTTGTCTGTAACCCCAGTCACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAATCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 90 bp GGCATTCCTCCATGGTCTGTGTTATCAGTGGCTGCTGTGCAGGGTTaGGTGCTCCGTACCATCATTTTGTGGTGCTCCATTGGGCTCCAT +
Preference number: 1 (lower is better)
Translates to: GIPPWSVLSVAAVQG*VLRTIILWCSIGLH
Trigger: ATGGAGCCCAATGGAGCACCACAAAATGATGGTACGGAGCACCCAACCCTGCACAGCAGCCACTGATAACACAGACCATGGAGGAATGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 90 bp AGTATTGATGGCCCTTGCCACAGTTCTGATGGAGTGGTGGACCAGTaGTCTTTCTTGGCCAGTGAGCATCAGGGCTCTGCTATCTGGGTC +
Preference number: 1 (lower is better)
Translates to: SIDGPCHSSDGVVDQ*SFLASEHQGSAIWV
Trigger: GACCCAGATAGCAGAGCCCTGATGCTCACTGGCCAAGAAAGACCACTGGTCCACCACTCCATCAGAACTGTGGCAAGGGCCATCAATACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 90 bp GTGGTTACAGAAGTATTGATGGCCCTTGCCACAGTTCTGATGGAGTaGTGGACCAGTGGTCTTTCTTGGCCAGTGAGCATCAGGGCTCTG +
Preference number: 1 (lower is better)
Translates to: VVTEVLMALATVLME*WTSGLSWPVSIRAL
Trigger: CAGAGCCCTGATGCTCACTGGCCAAGAAAGACCACTGGTCCACCACTCCATCAGAACTGTGGCAAGGGCCATCAATACTTCTGTAACCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 90 bp GTTACAGAAGTATTGATGGCCCTTGCCACAGTTCTGATGGAGTGGTaGACCAGTGGTCTTTCTTGGCCAGTGAGCATCAGGGCTCTGCTA +
Preference number: 1 (lower is better)
Translates to: VTEVLMALATVLMEW*TSGLSWPVSIRALL
Trigger: TAGCAGAGCCCTGATGCTCACTGGCCAAGAAAGACCACTGGTCCACCACTCCATCAGAACTGTGGCAAGGGCCATCAATACTTCTGTAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 90 bp TCCTGGAGAAAACATGCAAATAAAACCCAGCCACTTCTGAAGACGTaGGATCGCAGTCACGGTCATGGTCACGGTCACGGTCACAGTCAT +
Preference number: 1 (lower is better)
Translates to: SWRKHANKTQPLLKT*DRSHGHGHGHGHSH
Trigger: ATGACTGTGACCGTGACCGTGACCATGACCGTGACTGCGATCCCACGTCTTCAGAAGTGGCTGGGTTTTATTTGCATGTTTTCTCCAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 90 bp TTCGTAGCAAACAGCTCTCCCCCAATCCCTCTTCAATTCAGGTCATaGAACTCAGGACTCACACCTGTTAGGCAAGTGCTCCAAAGTCGA +
Preference number: 1 (lower is better)
Translates to: FVANSSPPIPLQFRS*NSGLTPVRQVLQSR
Trigger: TCGACTTTGGAGCACTTGCCTAACAGGTGTGAGTCCTGAGTTCCATGACCTGAATTGAAGAGGGATTGGGGGAGAGCTGTTTGCTACGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR GCA 90 bp TTCAATTCAGGTCATGGAACTCAGGACTCACACCTGTTAGGCAAGTaGTCCAAAGTCGAGCCCTGTTCATTTTTCCTGGGAAGGAAAATG +
Preference number: 1 (lower is better)
Translates to: FNSGHGTQDSHLLGK*SKVEPCSFFLGRKM
Trigger: CATTTTCCTTCCCAGGAAAAATGAACAGGGCTCGACTTTGGAGCACTTGCCTAACAGGTGTGAGTCCTGAGTTCCATGACCTGAATTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR GCA 90 bp TTACTTTTGAAATGGAAAAGTGGTTACAGAAGTATTGATGGCCCTTaGCACAGTTCTGATGGAGTGGTGGACCAGTGGTCTTTCTTGGCC +
Preference number: 1 (lower is better)
Translates to: LLLKWKSGYRSIDGP*HSSDGVVDQWSFLA
Trigger: GGCCAAGAAAGACCACTGGTCCACCACTCCATCAGAACTGTGGCAAGGGCCATCAATACTTCTGTAACCACTTTTCCATTTCAAAAGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 90 bp AGAGACATTGTATCTGAAGTTATCTACACTGAGCATGTACAGACATaGCATATAAAAATTCTGTACATATTCCCTAACCACACACAGTAC +
Preference number: 1 (lower is better)
Translates to: RDIVSEVIYTEHVQT*HIKILYIFPNHTQY
Trigger: GTACTGTGTGTGGTTAGGGAATATGTACAGAATTTTTATATGCCATGTCTGTACATGCTCAGTGTAGATAACTTCAGATACAATGTCTCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR TCA 90 bp AGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTaGGGGACTGCAGAAGGTCAC +
Preference number: 2 (lower is better)
Translates to: RGSIWSKAALGVRSATGPPAASL*GTAEGH
Trigger: GTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGG...GGGCCCAGTAGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
3UTR-3UTR CCA 90 bp GAGCTGCCTTTGCCTGCTCCTGCCTGGGGTCAGACTGTGAGCCGTAGGCCCATGTTAGGGTGGACCTCCTaGCCTGGTGGGCAAGCATTT +
Preference number: 2 (lower is better)
Translates to: ELPLPAPAWGQTVSRRPMLGWTS*PGGQAF
Trigger: AAATGCTTGCCCACCAGGCCAGGAGGTCCACCCTAA...CATGGGCCTACGGCTCACAGTCTGACCCCAGGCAGGAGCAGGCAAAGGCAGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CAA 90 bp GGACCTGCCCAGCCTTGTAGACCCACCAGCCTGCACAGTCCCTTCTaGGAAGGGAAGAGAGGCCCCTTCAGATGGCCTGAGTTTCTCCTC +
Preference number: 2 (lower is better)
Translates to: GPAQPCRPTSLHSPF*EGKRGPFRWPEFLL
Trigger: GAGGAGAAACTCAGGCCATCTGAAGGGGCCTCTCTTCCCTTCCAAGAAGGGACTGTGCAGGCTGGTGGGTCTACAAGGCTGGGCAGGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR TCA 90 bp CAGTCCCTGATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTGACTGGCCAGCAGCCAGCCTCTaGGGGACTGCAGAAGGTCAC +
Preference number: 2 (lower is better)
Translates to: QSLISQQSGQVQRGLCDWPAASL*GTAEGH
Trigger: GTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGG...CCAGTCACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAATCAGGGACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR CCA 90 bp CAGTCCCTGATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTGACTGGTGTGAGATCGGCTACTaGGCCCCCAGCAGCCAGCCT +
Preference number: 2 (lower is better)
Translates to: QSLISQQSGQVQRGLCDWCEIGY*APSSQP
Trigger: AGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACA...CCAGTCACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAATCAGGGACTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR TCA 90 bp GCCCACATTCGTAGCAAACAGCTCTCCCCCAATCCCTCTTCAATTCAGGTCATGCCTGGGGTCAGACTGTaGGCCGTAGGCCCATGGGGG +
Preference number: 2 (lower is better)
Translates to: AHIRSKQLSPNPSSIQVMPGVRL*AVGPWG
Trigger: CCCCCATGGGCCTACGGCTCACAGTCTGACCCCAGG...CATGACCTGAATTGAAGAGGGATTGGGGGAGAGCTGTTTGCTACGAATGTGGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR GCA 90 bp GGGAATGTGGGACCTGCCCAGCCTTGTAGACCCACCAGCCTGCACAGTCCCTTCTGTGTTATCAGTGGCTaGTGTGCAGGGTTGGGTGCT +
Preference number: 2 (lower is better)
Translates to: GNVGPAQPCRPTSLHSPFCVISG*CAGLGA
Trigger: AGCACCCAACCCTGCACAGCAGCCACTGATAACACA...GAAGGGACTGTGCAGGCTGGTGGGTCTACAAGGCTGGGCAGGTCCCACATTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR GCA 90 bp GAGCTGCCTTTGCCTGCTCCTGCCTGGGGTCAGACTGTGAGCCGTAGGCCCATGTACAGCTCTTCTTGTTaGTCTCTTGGCATCCCTCTG +
Preference number: 2 (lower is better)
Translates to: ELPLPAPAWGQTVSRRPMYSSSC*SLGIPL
Trigger: CAGAGGGATGCCAAGAGAGCAACAAGAAGAGCTGTA...CATGGGCCTACGGCTCACAGTCTGACCCCAGGCAGGAGCAGGCAAAGGCAGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR CCA 90 bp CACAGTTCTGATGGAGTGGTGGACCAGTGGTCTTTCTTGGCCAGTGAGCATCAGTGTGAGATCGGCTACTaGGCCCCCAGCAGCCAGCCT +
Preference number: 2 (lower is better)
Translates to: HSSDGVVDQWSFLASEHQCEIGY*APSSQP
Trigger: AGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACA...CTGATGCTCACTGGCCAAGAAAGACCACTGGTCCACCACTCCATCAGAACTGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CAA 90 bp GGGCATTCCTCCATGGTCTGTGTTATCAGTGGCTGCTGTGCAGGGTaGGGTGCTCCGTACCATCATTTTGTGGTGCTCCATTGGGCTCCA +
Preference number: 2 (lower is better)
Translates to: GHSSMVCVISGCCAG*GAPYHHFVVLHWAP
Trigger: TGGAGCCCAATGGAGCACCACAAAATGATGGTACGGAGCACCCAACCCTGCACAGCAGCCACTGATAACACAGACCATGGAGGAATGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR TCA 90 bp AGCCCCAAGACACTGCTTTCCTGTTTGCTGATGTCCAACCTTTTCTGGGTACCACCAGCAGCCAGCCTCTaGGGGACTGCAGAAGGTCAC +
Preference number: 2 (lower is better)
Translates to: SPKTLLSCLLMSNLFWVPPAASL*GTAEGH
Trigger: GTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGG...TGGTACCCAGAAAAGGTTGGACATCAGCAAACAGGAAAGCAGTGTCTTGGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR TCA 90 bp GTCCCTTCTTGGAAGGGAAGAGAGGCCCCTTCAGATGGCCTGAGTTTCTCCTCTAAACCCAGCCACTTCTaGAGACGTGGGATCGCAGTC +
Preference number: 2 (lower is better)
Translates to: VPSWKGREAPSDGLSFSSKPSHF*RRGIAV
Trigger: GACTGCGATCCCACGTCTTCAGAAGTGGCTGGGTTT...AGAGGAGAAACTCAGGCCATCTGAAGGGGCCTCTCTTCCCTTCCAAGAAGGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR GCA 90 bp AAAGTCAGGGTCACGAGCCCCAAGACACTGCTTTCCTGTTTGCTGATGTCCAACGCCTTTGCCTGCTCCTaGCTGGGGTCAGACTGTGAG +
Preference number: 2 (lower is better)
Translates to: KVRVTSPKTLLSCLLMSNAFACS*LGSDCE
Trigger: CTCACAGTCTGACCCCAGGCAGGAGCAGGCAAAGGC...GTTGGACATCAGCAAACAGGAAAGCAGTGTCTTGGGGCTCGTGACCCTGACTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR GCA 90 bp ATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTGACTGGGGTTACAGACTGGAATCACCCAGATaGCTCCCACCTGTGCCTGGA +
Preference number: 2 (lower is better)
Translates to: ISQQSGQVQRGLCDWGYRLESPR*LPPVPG
Trigger: TCCAGGCACAGGTGGGAGGCATCTGGGTGATTCCAG...TCTGTAACCCCAGTCACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR CCA 90 bp GCAATCCACAGTGTCATTGTCGTTAAAAACACAGCCAGGCTCCCACCCTGCCCCGGTCTGTGTTATCAGTaGCTGCTGTGCAGGGTTGGG +
Preference number: 2 (lower is better)
Translates to: AIHSVIVVKNTARLPPCPGLCYQ*LLCRVG
Trigger: CCCAACCCTGCACAGCAGCCACTGATAACACAGACC...GGGGCAGGGTGGGAGCCTGGCTGTGTTTTTAACGACAATGACACTGTGGATTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR CCA 90 bp TGTCCAGCCTTGGGCATAACCTGGAATCACCCAGATGCCTCCCACCTGTGCCTGATGGGCATTCCTCCATaGTCTGTGTTATCAGTGGCT +
Preference number: 2 (lower is better)
Translates to: CPALGITWNHPDASHLCLMGIPP*SVLSVA
Trigger: AGCCACTGATAACACAGACCATGGAGGAATGCCCAT...CAGGCACAGGTGGGAGGCATCTGGGTGATTCCAGGTTATGCCCAAGGCTGGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR CCA 90 bp TACAGACAAAGTCAGGGTCACGAGCCCCAAGACACTGCTTTCCTGTTTGCTGATGCCCATGGGGGAATGTaGGACCTGCCCAGCCTTGTA +
Preference number: 2 (lower is better)
Translates to: YRQSQGHEPQDTAFLFADAHGGM*DLPSLV
Trigger: TACAAGGCTGGGCAGGTCCCACATTCCCCCATGGGC...ATCAGCAAACAGGAAAGCAGTGTCTTGGGGCTCGTGACCCTGACTTTGTCTGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR GCA 90 bp CACAGTTCTGATGGAGTGGTGGACCAGTGGTCTTTCTTGGCCAGTGAGCATCAGAGCAAAGTGGCCAGGTaGAGAGAGGGCTTTGTGACT +
Preference number: 2 (lower is better)
Translates to: HSSDGVVDQWSFLASEHQSKVAR*REGFVT
Trigger: AGTCACAAAGCCCTCTCTGCACCTGGCCACTTTGCT...CTGATGCTCACTGGCCAAGAAAGACCACTGGTCCACCACTCCATCAGAACTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR CCA 90 bp AAAGTCAGGGTCACGAGCCCCAAGACACTGCTTTCCTGTTTGCTGATGTCCAACGGTCTGTGTTATCAGTaGCTGCTGTGCAGGGTTGGG +
Preference number: 2 (lower is better)
Translates to: KVRVTSPKTLLSCLLMSNGLCYQ*LLCRVG
Trigger: CCCAACCCTGCACAGCAGCCACTGATAACACAGACC...GTTGGACATCAGCAAACAGGAAAGCAGTGTCTTGGGGCTCGTGACCCTGACTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR CCA 90 bp GCAATCCACAGTGTCATTGTCGTTAAAAACACAGCCAGGCTCCCACCCTGCCCCCTTGCTGTGTGGCTATaGGTGAGTTACTTCCCCTCT +
Preference number: 2 (lower is better)
Translates to: AIHSVIVVKNTARLPPCPLAVWL*VSYFPS
Trigger: AGAGGGGAAGTAACTCACCCATAGCCACACAGCAAG...GGGGCAGGGTGGGAGCCTGGCTGTGTTTTTAACGACAATGACACTGTGGATTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR GCA 90 bp TACAGACAAAGTCAGGGTCACGAGCCCCAAGACACTGCTTTCCTGTTTGCTGATGCTGGTGATCAGGCCTaGGAGCACACACACTCCAAA +
Preference number: 2 (lower is better)
Translates to: YRQSQGHEPQDTAFLFADAGDQA*EHTHSK
Trigger: TTTGGAGTGTGTGTGCTCGCAGGCCTGATCACCAGC...ATCAGCAAACAGGAAAGCAGTGTCTTGGGGCTCGTGACCCTGACTTTGTCTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR CCA 90 bp GCCCACATTCGTAGCAAACAGCTCTCCCCCAATCCCTCTTCAATTCAGGTCATGAGAGGCCCCTTCAGATaGCCTGAGTTTCTCCTCTCT +
Preference number: 2 (lower is better)
Translates to: AHIRSKQLSPNPSSIQVMRGPFR*PEFLLS
Trigger: AGAGAGGAGAAACTCAGGCCATCTGAAGGGGCCTCT...CATGACCTGAATTGAAGAGGGATTGGGGGAGAGCTGTTTGCTACGAATGTGGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR CCA 90 bp CCCCAATCCCTCTTCAATTCAGGTCATGGAACTCAGGACTCACACCTGTTAGGCACCAGTGGTCTTTCTTaGCCAGTGAGCATCAGGGCT +
Preference number: 2 (lower is better)
Translates to: PQSLFNSGHGTQDSHLLGTSGLS*PVSIRA
Trigger: AGCCCTGATGCTCACTGGCCAAGAAAGACCACTGGT...GCCTAACAGGTGTGAGTCCTGAGTTCCATGACCTGAATTGAAGAGGGATTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR TCA 90 bp ATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTGACTGGGGTTACAGATGCTTTCCTGTTTGCTaGTGTCCAACCTTTTCTGGG +
Preference number: 2 (lower is better)
Translates to: ISQQSGQVQRGLCDWGYRCFPVC*CPTFSG
Trigger: CCCAGAAAAGGTTGGACATCAGCAAACAGGAAAGCA...TCTGTAACCCCAGTCACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR CCA 90 bp ATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTGACTGGGGTTACAGATTTGTGGTGCTCCATTaGGCTCCATCTTTACAGCTC +
Preference number: 2 (lower is better)
Translates to: ISQQSGQVQRGLCDWGYRFVVLH*APSLQL
Trigger: GAGCTGTAAAGATGGAGCCCAATGGAGCACCACAAA...TCTGTAACCCCAGTCACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR CCA 90 bp ACACACTCCAAAGGAGTGTGTAATCCCATCTGGAAAAAGGGAGTGTTAAGTATTCCTCTCTGCTTAGGGTaGACCTCCTGGCCTGGTGGG +
Preference number: 2 (lower is better)
Translates to: THSKGVCNPIWKKGVLSIPLCLG*TSWPGG
Trigger: CCCACCAGGCCAGGAGGTCCACCCTAAGCAGAGAGG...AATACTTAACACTCCCTTTTTCCAGATGGGATTACACACTCCTTTGGAGTGTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR CCA 90 bp GCCCACATTCGTAGCAAACAGCTCTCCCCCAATCCCTCTTCAATTCAGGTCATGACAGTTCTGATGGAGTaGTGGACCAGTGGTCTTTCT +
Preference number: 2 (lower is better)
Translates to: AHIRSKQLSPNPSSIQVMTVLME*WTSGLS
Trigger: AGAAAGACCACTGGTCCACCACTCCATCAGAACTGT...CATGACCTGAATTGAAGAGGGATTGGGGGAGAGCTGTTTGCTACGAATGTGGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR GCA 90 bp GACACAGGCCACTTCACCCTTATGCATGAGAATAAAAAGTCAAGTTCATCTTTTCAGCCTCTGAGGGACTaGAGAAGGTCACCTGTGCGC +
Preference number: 2 (lower is better)
Translates to: DTGHFTLMHENKKSSSSFQPLRD*RRSPVR
Trigger: GCGCACAGGTGACCTTCTGCAGTCCCTCAGAGGCTG...AAAAGATGAACTTGACTTTTTATTCTCATGCATAAGGGTGAAGTGGCCTGTGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR CCA 90 bp GACACAGGCCACTTCACCCTTATGCATGAGAATAAAAAGTCAAGTTCATCTTTTTCGCAGTCACGGTCATaGTCACGGTCACGGTCACAG +
Preference number: 2 (lower is better)
Translates to: DTGHFTLMHENKKSSSSFSQSRS*SRSRSQ
Trigger: CTGTGACCGTGACCGTGACCATGACCGTGACTGCGA...AAAAGATGAACTTGACTTTTTATTCTCATGCATAAGGGTGAAGTGGCCTGTGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR GCA 90 bp AAGGAAAATGTGGGGAGGTTTGCTCTAATAAACCTGGTATCAGTCCATTTCTGGTACAGCTCTTCTTGTTaGTCTCTTGGCATCCCTCTG +
Preference number: 2 (lower is better)
Translates to: KENVGRFALINLVSVHFWYSSSC*SLGIPL
Trigger: CAGAGGGATGCCAAGAGAGCAACAAGAAGAGCTGTA...CCAGAAATGGACTGATACCAGGTTTATTAGAGCAAACCTCCCCACATTTTCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR CCA 90 bp AAGGAAAATGTGGGGAGGTTTGCTCTAATAAACCTGGTATCAGTCCATTTCTGGATGGGCATTCCTCCATaGTCTGTGTTATCAGTGGCT +
Preference number: 2 (lower is better)
Translates to: KENVGRFALINLVSVHFWMGIPP*SVLSVA
Trigger: AGCCACTGATAACACAGACCATGGAGGAATGCCCAT...CCAGAAATGGACTGATACCAGGTTTATTAGAGCAAACCTCCCCACATTTTCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR TCA 72 bp AGCTGCCTTTGCCTGCTCCTGCCTGGGGTCAGACTGTaGGCCGTAGGCCCATGGGGGAATGTGGGACCTGCC +
Preference number: 3 (lower is better)
Translates to: SCLCLLLPGVRL*AVGPWGNVGPA
Trigger: GGCAGGTCCCACATTCCCCCATGGGCCTACGGCTCACAGTCTGACCCCAGGCAGGAGCAGGCAAAGGCAGCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 72 bp GCCCTAGGCTGCAGACAGCTCAACAGCTGTGTACAGTaGCACGGGCCTCCCAGGACTGACACAGGCCACTTC +
Preference number: 3 (lower is better)
Translates to: ALGCRQLNSCVQ*HGPPRTDTGHF
Trigger: GAAGTGGCCTGTGTCAGTCCTGGGAGGCCCGTGCCACTGTACACAGCTGTTGAGCTGTCTGCAGCCTAGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR TCA 72 bp ACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTaGGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCT +
Preference number: 3 (lower is better)
Translates to: TEAAFGLRLLWV*DRLLGPQQPAS
Trigger: AGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
3UTR GCA 72 bp ATGTGGGACCTGCCCAGCCTTGTAGACCCACCAGCCTaGACAGTCCCTTCTTGGAAGGGAAGAGAGGCCCCT +
Preference number: 3 (lower is better)
Translates to: MWDLPSLVDPPA*TVPSWKGREAP
Trigger: AGGGGCCTCTCTTCCCTTCCAAGAAGGGACTGTGCAGGCTGGTGGGTCTACAAGGCTGGGCAGGTCCCACAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR CAA 90 bp GTTCACCAGTCCCTGATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTTGCCTGGAGCTGCCTTaGCCTGCTCCTGCCTGGGGT +
Preference number: 3 (lower is better)
Translates to: VHQSLISQQSGQVQRGLCCLELP*PAPAWG
Trigger: ACCCCAGGCAGGAGCAGGCAAAGGCAGCTCCAGGCA...ACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAATCAGGGACTGGTGAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR TCA 72 bp GGGTCTGAGATCAGGGCTCGGCTACCTGGGTCTAAGTaGGGTCAGGGTTCACCAGTCCCTGATTTCCCAGCA +
Preference number: 3 (lower is better)
Translates to: GSEIRARLPGSK*GQGSPVPDFPA
Trigger: TGCTGGGAAATCAGGGACTGGTGAACCCTGACCTCACTTAGACCCAGGTAGCCGAGCCCTGATCTCAGACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 72 bp TTCTCCTCTCTGCTTAGGGTGGACCTCCTGGCCTGGTaGGCAAGCATTTCCACTCTGCTCTCAGCTCATGCC +
Preference number: 3 (lower is better)
Translates to: FSSLLRVDLLAW*ASISTLLSAHA
Trigger: GGCATGAGCTGAGAGCAGAGTGGAAATGCTTGCCCACCAGGCCAGGAGGTCCACCCTAAGCAGAGAGGAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 72 bp AGCCTTGTAGACCCACCAGCCTGCACAGTCCCTTCTTaGAAGGGAAGAGAGGCCCCTTCAGATGGCCTGAGT +
Preference number: 3 (lower is better)
Translates to: SLVDPPACTVPS*KGREAPSDGLS
Trigger: ACTCAGGCCATCTGAAGGGGCCTCTCTTCCCTTCCAAGAAGGGACTGTGCAGGCTGGTGGGTCTACAAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 72 bp GGCCCTTGCCACAGTTCTGATGGAGTGGTGGACCAGTaGTCTTTCTTGGCCAGTGAGCATCAGGGCTCTGCT +
Preference number: 3 (lower is better)
Translates to: GPCHSSDGVVDQ*SFLASEHQGSA
Trigger: AGCAGAGCCCTGATGCTCACTGGCCAAGAAAGACCACTGGTCCACCACTCCATCAGAACTGTGGCAAGGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR GCA 72 bp AGCATTTCCACTCTGCTCTCAGCTCATGCCCTAGGCTaGAGACAGCTCAACAGCTGTGTACAGTGGCACGGG +
Preference number: 3 (lower is better)
Translates to: SISTLLSAHALG*RQLNSCVQWHG
Trigger: CCCGTGCCACTGTACACAGCTGTTGAGCTGTCTGCAGCCTAGGGCATGAGCTGAGAGCAGAGTGGAAATGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 72 bp GGCACGCATCTTGTCTCACTGCTCTGGCTAAGCCAGTaGCCCACCATCACGGCTTCTCTTTATCTAGCCCAC +
Preference number: 3 (lower is better)
Translates to: GTHLVSLLWLSQ*PTITASLYLAH
Trigger: GTGGGCTAGATAAAGAGAAGCCGTGATGGTGGGCCACTGGCTTAGCCAGAGCAGTGAGACAAGATGCGTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 72 bp AATTCCCTGGTTATGTGTCCAGCCTTGGGCATAACCTaGAATCACCCAGATGCCTCCCACCTGTGCCTGGAG +
Preference number: 3 (lower is better)
Translates to: NSLVMCPALGIT*NHPDASHLCLE
Trigger: CTCCAGGCACAGGTGGGAGGCATCTGGGTGATTCCAGGTTATGCCCAAGGCTGGACACATAACCAGGGAATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 72 bp GTCACGGTCACAGTCATAGTCATGGGCATTCCTCCATaGTCTGTGTTATCAGTGGCTGCTGTGCAGGGTTGG +
Preference number: 3 (lower is better)
Translates to: VTVTVIVMGIPP*SVLSVAAVQGW
Trigger: CCAACCCTGCACAGCAGCCACTGATAACACAGACCATGGAGGAATGCCCATGACTATGACTGTGACCGTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 72 bp ACAGTTCTGATGGAGTGGTGGACCAGTGGTCTTTCTTaGCCAGTGAGCATCAGGGCTCTGCTATCTGGGTCT +
Preference number: 3 (lower is better)
Translates to: TVLMEWWTSGLS*PVSIRALLSGS
Trigger: AGACCCAGATAGCAGAGCCCTGATGCTCACTGGCCAAGAAAGACCACTGGTCCACCACTCCATCAGAACTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 72 bp GTATTGATGGCCCTTGCCACAGTTCTGATGGAGTGGTaGACCAGTGGTCTTTCTTGGCCAGTGAGCATCAGG +
Preference number: 3 (lower is better)
Translates to: VLMALATVLMEW*TSGLSWPVSIR
Trigger: CCTGATGCTCACTGGCCAAGAAAGACCACTGGTCCACCACTCCATCAGAACTGTGGCAAGGGCCATCAATAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR GCA 72 bp GCATTCCTCCATGGTCTGTGTTATCAGTGGCTGCTGTaGAGGGTTGGGTGCTCCGTACCATCATTTTGTGGT +
Preference number: 3 (lower is better)
Translates to: AFLHGLCYQWLL*RVGCSVPSFCG
Trigger: ACCACAAAATGATGGTACGGAGCACCCAACCCTGCACAGCAGCCACTGATAACACAGACCATGGAGGAATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 72 bp CCATGGTCTGTGTTATCAGTGGCTGCTGTGCAGGGTTaGGTGCTCCGTACCATCATTTTGTGGTGCTCCATT +
Preference number: 3 (lower is better)
Translates to: PWSVLSVAAVQG*VLRTIILWCSI
Trigger: AATGGAGCACCACAAAATGATGGTACGGAGCACCCAACCCTGCACAGCAGCCACTGATAACACAGACCATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 72 bp GAAGTATTGATGGCCCTTGCCACAGTTCTGATGGAGTaGTGGACCAGTGGTCTTTCTTGGCCAGTGAGCATC +
Preference number: 3 (lower is better)
Translates to: EVLMALATVLME*WTSGLSWPVSI
Trigger: GATGCTCACTGGCCAAGAAAGACCACTGGTCCACCACTCCATCAGAACTGTGGCAAGGGCCATCAATACTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR CAA 90 bp ATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTGACTGGGGTTACAGAGTTATGTGTCCAGCCTaGGGCATAACCTGGAATCAC +
Preference number: 3 (lower is better)
Translates to: ISQQSGQVQRGLCDWGYRVMCPA*GITWNH
Trigger: GTGATTCCAGGTTATGCCCAAGGCTGGACACATAAC...TCTGTAACCCCAGTCACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR TCA 72 bp GGGTCACGAGCCCCAAGACACTGCTTTCCTGTTTGCTaGTGTCCAACCTTTTCTGGGTACCATGCTAAGATG +
Preference number: 3 (lower is better)
Translates to: GSRAPRHCFPVC*CPTFSGYHAKM
Trigger: CATCTTAGCATGGTACCCAGAAAAGGTTGGACATCAGCAAACAGGAAAGCAGTGTCTTGGGGCTCGTGACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR GCA 72 bp TGCTCCATTGGGCTCCATCTTTACAGCTCTTCTTGTTaGTCTCTTGGCATCCCTCTGGCACGCATCTTGTCT +
Preference number: 3 (lower is better)
Translates to: CSIGLHLYSSSC*SLGIPLARILS
Trigger: AGACAAGATGCGTGCCAGAGGGATGCCAAGAGAGCAACAAGAAGAGCTGTAAAGATGGAGCCCAATGGAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR GCA 72 bp GTGCAGGGTTGGGTGCTCCGTACCATCATTTTGTGGTaGTCCATTGGGCTCCATCTTTACAGCTCTTCTTGT +
Preference number: 3 (lower is better)
Translates to: VQGWVLRTIILW*SIGLHLYSSSC
Trigger: ACAAGAAGAGCTGTAAAGATGGAGCCCAATGGAGCACCACAAAATGATGGTACGGAGCACCCAACCCTGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR GCA 72 bp GGTCATGGAACTCAGGACTCACACCTGTTAGGCAAGTaGTCCAAAGTCGAGCCCTGTTCATTTTTCCTGGGA +
Preference number: 3 (lower is better)
Translates to: GHGTQDSHLLGK*SKVEPCSFFLG
Trigger: TCCCAGGAAAAATGAACAGGGCTCGACTTTGGAGCACTTGCCTAACAGGTGTGAGTCCTGAGTTCCATGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 72 bp TTTACAGCTCTTCTTGTTGCTCTCTTGGCATCCCTCTaGCACGCATCTTGTCTCACTGCTCTGGCTAAGCCA +
Preference number: 3 (lower is better)
Translates to: FTALLVALLASL*HASCLTALAKP
Trigger: TGGCTTAGCCAGAGCAGTGAGACAAGATGCGTGCCAGAGGGATGCCAAGAGAGCAACAAGAAGAGCTGTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CCA 72 bp AACAGCTCTCCCCCAATCCCTCTTCAATTCAGGTCATaGAACTCAGGACTCACACCTGTTAGGCAAGTGCTC +
Preference number: 3 (lower is better)
Translates to: NSSPPIPLQFRS*NSGLTPVRQVL
Trigger: GAGCACTTGCCTAACAGGTGTGAGTCCTGAGTTCCATGACCTGAATTGAAGAGGGATTGGGGGAGAGCTGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR TCA 72 bp GCTGATGTCCAACCTTTTCTGGGTACCATGCTAAGATaGAAGCTGCCTCTGATACAGCCTGATGCCAGCTTG +
Preference number: 3 (lower is better)
Translates to: ADVQPFLGTMLR*KLPLIQPDASL
Trigger: CAAGCTGGCATCAGGCTGTATCAGAGGCAGCTTTCATCTTAGCATGGTACCCAGAAAAGGTTGGACATCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR GCA 72 bp ACCTGGTATCAGTCCATTTCTGGCTGTATAGGTTCTTaGTGTGTGGCTATGGGTGAGTTACTTCCCCTCTCT +
Preference number: 3 (lower is better)
Translates to: TWYQSISGCIGS*CVAMGELLPLS
Trigger: AGAGAGGGGAAGTAACTCACCCATAGCCACACAGCAAGAACCTATACAGCCAGAAATGGACTGATACCAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR CAA 90 bp GTTCACCAGTCCCTGATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTAGGCACAAAGAGACATaGTATCTGAAGTTATCTACA +
Preference number: 3 (lower is better)
Translates to: VHQSLISQQSGQVQRGLCRHKET*YLKLST
Trigger: TGTAGATAACTTCAGATACAATGTCTCTTTGTGCCT...ACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAATCAGGGACTGGTGAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR-3UTR CAA 90 bp GCAATCCACAGTGTCATTGTCGTTAAAAACACAGCCAGGCTCCCACCCTGCCCCAGGCACAAAGAGACATaGTATCTGAAGTTATCTACA +
Preference number: 3 (lower is better)
Translates to: AIHSVIVVKNTARLPPCPRHKET*YLKLST
Trigger: TGTAGATAACTTCAGATACAATGTCTCTTTGTGCCT...GGGGCAGGGTGGGAGCCTGGCTGTGTTTTTAACGACAATGACACTGTGGATTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR GCA 72 bp AAATGGAAAAGTGGTTACAGAAGTATTGATGGCCCTTaGCACAGTTCTGATGGAGTGGTGGACCAGTGGTCT +
Preference number: 3 (lower is better)
Translates to: KWKSGYRSIDGP*HSSDGVVDQWS
Trigger: AGACCACTGGTCCACCACTCCATCAGAACTGTGGCAAGGGCCATCAATACTTCTGTAACCACTTTTCCATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp TACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGCGCCAGGCAGGCTGGCCGTaGTGTCCAGGAGCCTCTGGG +
Preference number: 4 (lower is better)
Translates to: YWAPSSQPLRDCRRSPVRQAGWP*CPGASG
Trigger: CCCAGAGGCTCCTGGACATCACGGCCAGCCTGCCTG...GCGCACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGCGCCCAGTCGGGCCTCCAGCTCCTaGAGCTTCACCTCTCTGGTC +
Preference number: 4 (lower is better)
Translates to: GPQQPASEGLQKVTCAPSRASSS*SFTSLV
Trigger: GACCAGAGAGGTGAAGCTGCAGGAGCTGGAGGCCCG...ACTGGGCGCACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGCGCCCAGTTGGCTGTCTTCACCGTaGGCTCCAAGCCCTCCTGGG +
Preference number: 4 (lower is better)
Translates to: GPQQPASEGLQKVTCAPSWLSSP*APSPPG
Trigger: CCCAGGAGGGCTTGGAGCCCACGGTGAAGACAGCCA...ACTGGGCGCACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp TGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGCGCCCCAGACAGCTGTaGACCTTCTCCACCACCGCC +
Preference number: 4 (lower is better)
Translates to: CEIGYWAPSSQPLRDCRRRPRQL*TFSTTA
Trigger: GGCGGTGGTGGAGAAGGTGCACAGCTGTCTGGGGCG...CCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGCGCCCAGTGTTCTGTGGCCAGCTTaGAGTTCCGCCCCAGACAGC +
Preference number: 4 (lower is better)
Translates to: GPQQPASEGLQKVTCAPSVLWPA*SSAPDS
Trigger: GCTGTCTGGGGCGGAACTGCAAGCTGGCCACAGAAC...ACTGGGCGCACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGCGGGCCTCCAGCTCCTaGAGCTTCACCTCTCTGGTC +
Preference number: 4 (lower is better)
Translates to: GYWAPSSQPLRDCRRSPVRASSS*SFTSLV
Trigger: GACCAGAGAGGTGAAGCTGCAGGAGCTGGAGGCCCG...CACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp TGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCCCGGTACTGCTCATaGTCCTGGGCCACCTGGGCC +
Preference number: 4 (lower is better)
Translates to: CEIGYWAPSSQPLRDCRRSRYCS*SWATWA
Trigger: GGCCCAGGTGGCCCAGGACCATGAGCAGTACCGGGA...CCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp TGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGAGCGGGCGAAGTTGTTaGCCAGGGCGCAGCTGCGCT +
Preference number: 4 (lower is better)
Translates to: CEIGYWAPSSQPLRDCRRSGRSC*PGRSCA
Trigger: AGCGCAGCTGCGCCCTGGCCAACAACTTCGCCCGCT...CCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GGCTGCTCTGGGTGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGCCTGGCCAAAGATGCTaGCCAGCAGGTCGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: GCSGCEIGYWAPSSQPLRPGQRC*PAGRSS
Trigger: TGAAGACCGACCTGCTGGGCAGCATCTTTGGCCAGG...CCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACACCCAGAGCAGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp ATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTTACTGCTCATGGTCCTaGGCCACCTGGGCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: IGYWAPSSQPLRDCRRSPYCSWS*ATWARR
Trigger: CCTCCTGGCCCAGGTGGCCCAGGACCATGAGCAGTA...AGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp TGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTGGCTGTCTTCACCGTaGGCTCCAAGCCCTCCTGGG +
Preference number: 4 (lower is better)
Translates to: CEIGYWAPSSQPLRDCRRWLSSP*APSPPG
Trigger: CCCAGGAGGGCTTGGAGCCCACGGTGAAGACAGCCA...CCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGCTGCTCTGGGTGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGCCAGCTCATCCTCTGTaGCTGTCTTCACCGTGGGCT +
Preference number: 4 (lower is better)
Translates to: GCSGCEIGYWAPSSQPLRPAHPL*LSSPWA
Trigger: AGCCCACGGTGAAGACAGCCACAGAGGATGAGCTGG...CCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACACCCAGAGCAGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGCTGCTCTGGGTGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGCTTGGATCCTGGCCTaGAGGTCTAGGAGCTTCCTG +
Preference number: 4 (lower is better)
Translates to: GCSGCEIGYWAPSSQPLRAWILA*RSRSFL
Trigger: CAGGAAGCTCCTAGACCTCCAGGCCAGGATCCAAGC...CCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACACCCAGAGCAGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGACCTTCATCCAGGCCTaGGCATCCTCCACGCTCCTC +
Preference number: 4 (lower is better)
Translates to: GYWAPSSQPLRDCRRSPVTFIQA*ASSTLL
Trigger: GAGGAGCGTGGAGGATGCCCAGGCCTGGATGAAGGT...CACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095439.11
CDS-3UTR TCA 90 bp ATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTTACACGGGGTTCCTCTaGAGCCAGTGCAGCCCGAGT +
Preference number: 4 (lower is better)
Translates to: IGYWAPSSQPLRDCRRSPYTGFL*SQCSPS
Trigger: ACTCGGGCTGCACTGGCTTCAGAGGAACCCCGTGTA...AGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp TACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGCGCCTGGGAATGGGGTCCTaGGGGTTGATGAGAAAGCCG +
Preference number: 4 (lower is better)
Translates to: YWAPSSQPLRDCRRSPVRLGMGS*GLMRKP
Trigger: CGGCTTTCTCATCAACCCTCAGGACCCCATTCCCAG...GCGCACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp GGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGCATTGTACCGAAGCATaGGCGCAAAGGAGCGGGCGA +
Preference number: 4 (lower is better)
Translates to: GYWAPSSQPLRDCRRSPVHCTEA*AQRSGR
Trigger: TCGCCCGCTCCTTTGCGCTCATGCTTCGGTACAATG...CACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GGCTGCTCTGGGTGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGTGGCTCAGCTGCCATTaGTTCTCCTTCAAGCCCAGC +
Preference number: 4 (lower is better)
Translates to: GCSGCEIGYWAPSSQPLRWLSCH*FSFKPS
Trigger: GCTGGGCTTGAAGGAGAAGCAATGGCAGCTGAGCCA...CCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACACCCAGAGCAGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GGGTGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGACCTGGCCAAAGATGCTaGCCAGCAGGTCGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: GCEIGYWAPSSQPLRDCRPGQRC*PAGRSS
Trigger: TGAAGACCGACCTGCTGGGCAGCATCTTTGGCCAGG...TCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GGGTGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGATCTCCTGGCCAAAGATaGTGCCCAGCAGGTCGGTCT +
Preference number: 4 (lower is better)
Translates to: GCEIGYWAPSSQPLRDCRSPGQR*CPAGRS
Trigger: AGACCGACCTGCTGGGCAGCATCTTTGGCCAGGAGA...TCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp TACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGCGCCTCCAGGAGGGTGGCTaGTCTCTCCTGGCCAAAGAT +
Preference number: 4 (lower is better)
Translates to: YWAPSSQPLRDCRRSPVRLQEGG*SLLAKD
Trigger: ATCTTTGGCCAGGAGAGAGCAGCCACCCTCCTGGAG...GCGCACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GGGTGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGATCTTCCTGCAGCCCCTaGAACCTTAGGAGCTGGACC +
Preference number: 4 (lower is better)
Translates to: GCEIGYWAPSSQPLRDCRSSCSP*NLRSWT
Trigger: GGTCCAGCTCCTAAGGTTGCAGGGGCTGCAGGAAGA...TCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp TGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCCTCCAGGGACCTCTaGAGGGCTTGCTGGTCACAG +
Preference number: 4 (lower is better)
Translates to: CEIGYWAPSSQPLRDCRRSSRDL*RACWSQ
Trigger: CTGTGACCAGCAAGCCCTGCAGAGGTCCCTGGAGGA...CCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGAGCAGGAGCAACAGCTaGAATGGCAGTGCCACACGG +
Preference number: 4 (lower is better)
Translates to: GYWAPSSQPLRDCRRSPVSRSNS*NGSATR
Trigger: CCGTGTGGCACTGCCATTGCAGCTGTTGCTCCTGCT...CACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp TGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGAGCAGCACCTGGGCGTaGCTCAGCTGCCATTGCTTC +
Preference number: 4 (lower is better)
Translates to: CEIGYWAPSSQPLRDCRRSSTWA*LSCHCF
Trigger: GAAGCAATGGCAGCTGAGCCACGCCCAGGTGCTGCT...CCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGGAATGTGGGACCTGCCCAGCCTTGTAGACCCACCAGCCTGCACAGTCCCTTCTGGCTGTCTTCACCGTaGGCTCCAAGCCCTCCTGGG +
Preference number: 4 (lower is better)
Translates to: GNVGPAQPCRPTSLHSPFWLSSP*APSPPG
Trigger: CCCAGGAGGGCTTGGAGCCCACGGTGAAGACAGCCA...GAAGGGACTGTGCAGGCTGGTGGGTCTACAAGGCTGGGCAGGTCCCACATTCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGGTGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAGAGAACAGCCTCCACTaGGCCACCAGCTCATCCTCT +
Preference number: 4 (lower is better)
Translates to: GCEIGYWAPSSQPLRDCRENSLH*ATSSSS
Trigger: AGAGGATGAGCTGGTGGCCCAGTGGAGGCTGTTCTC...TCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGGTGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAGCTTGGATCCTGGCCTaGAGGTCTAGGAGCTTCCTG +
Preference number: 4 (lower is better)
Translates to: GCEIGYWAPSSQPLRDCRAWILA*RSRSFL
Trigger: CAGGAAGCTCCTAGACCTCCAGGCCAGGATCCAAGC...TCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp TACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGCGCTGCCTCCGACTCTTCTaGAATGCAGTCAGCTCCCCC +
Preference number: 4 (lower is better)
Translates to: YWAPSSQPLRDCRRSPVRCLRLF*NAVSSP
Trigger: GGGGGAGCTGACTGCATTCCAGAAGAGTCGGAGGCA...GCGCACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp TGCCTGGAGCTGCCTTTGCCTGCTCCTGCCTGGGGTCAGACTGTGAGCCGTAGGTGGGGTAGAAAGGTGTaGATGGAGGCCAGGTCAGGC +
Preference number: 4 (lower is better)
Translates to: CLELPLPAPAWGQTVSRRWGRKV*MEARSG
Trigger: GCCTGACCTGGCCTCCATTCACACCTTTCTACCCCA...CCTACGGCTCACAGTCTGACCCCAGGCAGGAGCAGGCAAAGGCAGCTCCAGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp GAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACTGGGAATGGGGTCCTaGGGGTTGATGAGAAAGCCG +
Preference number: 4 (lower is better)
Translates to: EIGYWAPSSQPLRDCRRSLGMGS*GLMRKP
Trigger: CGGCTTTCTCATCAACCCTCAGGACCCCATTCCCAG...TGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp GGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGACCGTCTCCTCCCACTaGGACTTGATATCCCTCAGC +
Preference number: 4 (lower is better)
Translates to: GYWAPSSQPLRDCRRSPVTVSSH*DLISLS
Trigger: GCTGAGGGATATCAAGTCTCAGTGGGAGGAGACGGT...CACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095439.11
CDS-3UTR GCA 90 bp GGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGCTGTCAGAGAGTGACTaGAGGTCCGGGAAGGTGACA +
Preference number: 4 (lower is better)
Translates to: GYWAPSSQPLRDCRRSPVLSESD*RSGKVT
Trigger: TGTCACCTTCCCGGACCTGCAGTCACTCTCTGACAG...CACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp TACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGCGCTGCAGCATCGCCAGCTaGTCTTTCAGGCGAGAGCTT +
Preference number: 4 (lower is better)
Translates to: YWAPSSQPLRDCRRSPVRCSIAS*SFRREL
Trigger: AAGCTCTCGCCTGAAAGAGCAGCTGGCGATGCTGCA...GCGCACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp TGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGAGGTCGGTCTTCAGCTaGAGCATCGCCAGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: CEIGYWAPSSQPLRDCRRRSVFS*SIASCS
Trigger: AGAGCAGCTGGCGATGCTGCAGCTGAAGACCGACCT...CCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCAAGGTCGGTCTTCAGCTaGAGCATCGCCAGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: EIGYWAPSSQPLRDCRRSRSVFS*SIASCS
Trigger: AGAGCAGCTGGCGATGCTGCAGCTGAAGACCGACCT...TGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp TACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGCGCCTTAGGAGCTGGACCTaGTTTCCAGGAAGGTCCCTC +
Preference number: 4 (lower is better)
Translates to: YWAPSSQPLRDCRRSPVRLRSWT*FPGRSL
Trigger: GAGGGACCTTCCTGGAAAGCAGGTCCAGCTCCTAAG...GCGCACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCAGACCTCTGCAGGGCTTaGTGGTCACAGGAGATCTGG +
Preference number: 4 (lower is better)
Translates to: EIGYWAPSSQPLRDCRRSDLCRA*WSQEIW
Trigger: CCAGATCTCCTGTGACCAGCAAGCCCTGCAGAGGTC...TGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp TCAGCTCATGCCCTAGGCTGCAGACAGCTCAACAGCTGTGTACAGTGGCACGGGTCCCGGTACTGCTCATaGTCCTGGGCCACCTGGGCC +
Preference number: 4 (lower is better)
Translates to: SAHALGCRQLNSCVQWHGSRYCS*SWATWA
Trigger: GGCCCAGGTGGCCCAGGACCATGAGCAGTACCGGGA...CCCGTGCCACTGTACACAGCTGTTGAGCTGTCTGCAGCCTAGGGCATGAGCTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp TGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGGAGAACAGCCTCCACTaGGCCACCAGCTCATCCTCT +
Preference number: 4 (lower is better)
Translates to: CEIGYWAPSSQPLRDCRRENSLH*ATSSSS
Trigger: AGAGGATGAGCTGGTGGCCCAGTGGAGGCTGTTCTC...CCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGCTGCTCTGGGTGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGTGGAGCAGGGACACCTaGACCTCTTTCTCTGGGATT +
Preference number: 4 (lower is better)
Translates to: GCSGCEIGYWAPSSQPLRWSRDT*TSFSGI
Trigger: AATCCCAGAGAAAGAGGTCCAGGTGTCCCTGCTCCA...CCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACACCCAGAGCAGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp TACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGCGCTTCCTCAGCTCCTCCTaGACCATGGTTGCCCCTTCT +
Preference number: 4 (lower is better)
Translates to: YWAPSSQPLRDCRRSPVRFLSSS*TMVAPS
Trigger: AGAAGGGGCAACCATGGTCCAGGAGGAGCTGAGGAA...GCGCACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp TACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGCGCGTCGTGTCCTTCCAGTaGGTTTGCCCCATGCTGTCT +
Preference number: 4 (lower is better)
Translates to: YWAPSSQPLRDCRRSPVRVVSFQ*VCPMLS
Trigger: AGACAGCATGGGGCAAACCCACTGGAAGGACACGAC...GCGCACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp GGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGCCGACAGCCTGTGACTaGAGGTACAATGTTCCCGTA +
Preference number: 4 (lower is better)
Translates to: GYWAPSSQPLRDCRRSPVPTACD*RYNVPV
Trigger: TACGGGAACATTGTACCTTCAGTCACAGGCTGTCGG...CACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp GGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGTTGGGATGTTGTTGGTaGACACCTGCTTCTTCCCCG +
Preference number: 4 (lower is better)
Translates to: GYWAPSSQPLRDCRRSPVLGCCW*TPASSP
Trigger: CGGGGAAGAAGCAGGTGTTCACCAACAACATCCCAA...CACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp ATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTAGGTACTCACTCCAGTaGAGCCACACCCACTCGATG +
Preference number: 4 (lower is better)
Translates to: IGYWAPSSQPLRDCRRSPRYSLQ*SHTHSM
Trigger: CATCGAGTGGGTGTGGCTGCACTGGAGTGAGTACCT...AGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp TGCCTGGAGCTGCCTTTGCCTGCTCCTGCCTGGGGTCAGACTGTGAGCCGTAGGTGGGCGTGGCTCAGCTaGCATTGCTTCTCCTTCAAG +
Preference number: 4 (lower is better)
Translates to: CLELPLPAPAWGQTVSRRWAWLS*HCFSFK
Trigger: CTTGAAGGAGAAGCAATGGCAGCTGAGCCACGCCCA...CCTACGGCTCACAGTCTGACCCCAGGCAGGAGCAGGCAAAGGCAGCTCCAGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp CAGTCCCTGATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTGACTGGCGCCCCAGACAGCTGTaGACCTTCTCCACCACCGCC +
Preference number: 4 (lower is better)
Translates to: QSLISQQSGQVQRGLCDWRPRQL*TFSTTA
Trigger: GGCGGTGGTGGAGAAGGTGCACAGCTGTCTGGGGCG...CCAGTCACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAATCAGGGACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGGAAGTCTCCCAGTTCTaGCTCCAGCTGTTGGATCTG +
Preference number: 4 (lower is better)
Translates to: GYWAPSSQPLRDCRRSPVEVSQF*LQLLDL
Trigger: CAGATCCAACAGCTGGAGGCAGAACTGGGAGACTTC...CACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp ATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTACAGAACTTGTCACCTaGTCCAGGAGGGTGGCTGCT +
Preference number: 4 (lower is better)
Translates to: IGYWAPSSQPLRDCRRSPTELVT*SRRVAA
Trigger: AGCAGCCACCCTCCTGGAGCAGGTGACAAGTTCTGT...AGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGCGCCCAGTTCTGTCCTCTGCAGCTaGTGGTTTCTCATGAGACTC +
Preference number: 4 (lower is better)
Translates to: GPQQPASEGLQKVTCAPSSVLCS*WFLMRL
Trigger: GAGTCTCATGAGAAACCAGCAGCTGCAGAGGACAGA...ACTGGGCGCACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGGTGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAGCCTTCATCCTCTTCTaGGCATCTTCATCCACGCTG +
Preference number: 4 (lower is better)
Translates to: GCEIGYWAPSSQPLRDCRAFILF*ASSSTL
Trigger: CAGCGTGGATGAAGATGCCCAGAAGAGGATGAAGGC...TCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp ATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTTTCCTCAGCTCCTCCTaGACCATGGTTGCCCCTTCT +
Preference number: 4 (lower is better)
Translates to: IGYWAPSSQPLRDCRRSPFLSSS*TMVAPS
Trigger: AGAAGGGGCAACCATGGTCCAGGAGGAGCTGAGGAA...AGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGGTGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGATGGTCCTCAAGTCCTTaGCTGTGGCCACTCTCATTG +
Preference number: 4 (lower is better)
Translates to: GCEIGYWAPSSQPLRDCRWSSSP*LWPLSL
Trigger: CAATGAGAGTGGCCACAGCCAAGGACTTGAGGACCA...TCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp TGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGGCAGCTTCACCTCTCTaGTCCTCAAGTCCTTGGCTG +
Preference number: 4 (lower is better)
Translates to: CEIGYWAPSSQPLRDCRRAASPL*SSSPWL
Trigger: CAGCCAAGGACTTGAGGACCAGAGAGGTGAAGCTGC...CCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGGAATGTGGGACCTGCCCAGCCTTGTAGACCCACCAGCCTGCACAGTCCCTTCTGCCTCCGACTCTTCTaGAATGCAGTCAGCTCCCCC +
Preference number: 4 (lower is better)
Translates to: GNVGPAQPCRPTSLHSPFCLRLF*NAVSSP
Trigger: GGGGGAGCTGACTGCATTCCAGAAGAGTCGGAGGCA...GAAGGGACTGTGCAGGCTGGTGGGTCTACAAGGCTGGGCAGGTCCCACATTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp GGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGCGCCCAGTTCTGAAGGCTTTTCTTaGAGTCTCCCAGTTCTGCCT +
Preference number: 4 (lower is better)
Translates to: GPQQPASEGLQKVTCAPSSEGFS*SLPVLP
Trigger: AGGCAGAACTGGGAGACTTCAAGAAAAGCCTTCAGA...ACTGGGCGCACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp GAGCTGCCTTTGCCTGCTCCTGCCTGGGGTCAGACTGTGAGCCGTAGGCCCATGTCCTGGGCCAGCCTCTaGAGGCTTTTCTTGAAGTCT +
Preference number: 4 (lower is better)
Translates to: ELPLPAPAWGQTVSRRPMSWASL*RLFLKS
Trigger: AGACTTCAAGAAAAGCCTTCAGAGGCTGGCCCAGGA...CATGGGCCTACGGCTCACAGTCTGACCCCAGGCAGGAGCAGGCAAAGGCAGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp TCAGCTCATGCCCTAGGCTGCAGACAGCTCAACAGCTGTGTACAGTGGCACGGGTACACGGGGTTCCTCTaGAGCCAGTGCAGCCCGAGT +
Preference number: 4 (lower is better)
Translates to: SAHALGCRQLNSCVQWHGYTGFL*SQCSPS
Trigger: ACTCGGGCTGCACTGGCTTCAGAGGAACCCCGTGTA...CCCGTGCCACTGTACACAGCTGTTGAGCTGTCTGCAGCCTAGGGCATGAGCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp GGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGCGCCCAGTATACTTTGGTATTCCTaGATGGTGGCTACCACGCTG +
Preference number: 4 (lower is better)
Translates to: GPQQPASEGLQKVTCAPSILWYS*MVATTL
Trigger: CAGCGTGGTAGCCACCATTCAGGAATACCAAAGTAT...ACTGGGCGCACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp GGCTGCTCTGGGTGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGATACTTTGGTATTCCTaGATGGTGGCTACCACGCTG +
Preference number: 4 (lower is better)
Translates to: GCSGCEIGYWAPSSQPLRILWYS*MVATTL
Trigger: CAGCGTGGTAGCCACCATTCAGGAATACCAAAGTAT...CCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACACCCAGAGCAGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp TCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTCAGGCAGGCTGGCCGTaGTGTCCAGGAGCCTCTGGG +
Preference number: 4 (lower is better)
Translates to: SGNRGSIWSKAALGVRSAQAGWP*CPGASG
Trigger: CCCAGAGGCTCCTGGACATCACGGCCAGCCTGCCTG...AGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp GAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCATTGGGATGTTGTTGGTaGACACCTGCTTCTTCCCCG +
Preference number: 4 (lower is better)
Translates to: EIGYWAPSSQPLRDCRRSLGCCW*TPASSP
Trigger: CGGGGAAGAAGCAGGTGTTCACCAACAACATCCCAA...TGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp GGGTGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAGTGTTGTCATTGACCTaGAGCTGCTCCTGTATCACC +
Preference number: 4 (lower is better)
Translates to: GCEIGYWAPSSQPLRDCRVLSLT*SCSCIT
Trigger: GGTGATACAGGAGCAGCTTCAGGTCAATGACAACAC...TCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095439.11
CDS-3UTR GCA 90 bp ATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGAAGTCTCCCAGTTCTaGCTCCAGCTGTTGGATCTG +
Preference number: 4 (lower is better)
Translates to: IGYWAPSSQPLRDCRRSPEVSQF*LQLLDL
Trigger: CAGATCCAACAGCTGGAGGCAGAACTGGGAGACTTC...AGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GGGAATGTGGGACCTGCCCAGCCTTGTAGACCCACCAGCCTGCACAGTCCCTTCCTGTCAGAGAGTGACTaGAGGTCCGGGAAGGTGACA +
Preference number: 4 (lower is better)
Translates to: GNVGPAQPCRPTSLHSPFLSESD*RSGKVT
Trigger: TGTCACCTTCCCGGACCTGCAGTCACTCTCTGACAG...GAAGGGACTGTGCAGGCTGGTGGGTCTACAAGGCTGGGCAGGTCCCACATTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp ATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTTTGTTGGTGAACACCTaGTTCTTCCCCGTGTCCACC +
Preference number: 4 (lower is better)
Translates to: IGYWAPSSQPLRDCRRSPLLVNT*FFPVST
Trigger: GGTGGACACGGGGAAGAAGCAGGTGTTCACCAACAA...AGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGCGCCCAGTTTGGAGTTTTCTGCCTaGAGCCACTGTTCAAAGTCC +
Preference number: 4 (lower is better)
Translates to: GPQQPASEGLQKVTCAPSLEFSA*SHCSKS
Trigger: GGACTTTGAACAGTGGCTGCAGGCAGAAAACTCCAA...ACTGGGCGCACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp AGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTACTGGGCCCTTGTGCAGCAGCACCTaGGCGTGGCTCAGCTGCCAT +
Preference number: 4 (lower is better)
Translates to: RGSIWSKAALGVRSATGPLCSST*AWLSCH
Trigger: ATGGCAGCTGAGCCACGCCCAGGTGCTGCTGCACAA...GGGCCCAGTAGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTACTTGGTCCTGGGCCACCTaGGCCAGGAGGTCCACCCTG +
Preference number: 4 (lower is better)
Translates to: GNRGSIWSKAALGVRSATWSWAT*ARRSTL
Trigger: CAGGGTGGACCTCCTGGCCCAGGTGGCCCAGGACCA...AGTAGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GCATTCCTCCATGGTCTGTGTTATCAGTGGCTGCTGTGCAGGGTTGGGTGCTCCATGTCCAGGAGCCTCTaGGCCAGGGCCTTCCACAGC +
Preference number: 4 (lower is better)
Translates to: AFLHGLCYQWLLCRVGCSMSRSL*ARAFHS
Trigger: GCTGTGGAAGGCCCTGGCCCAGAGGCTCCTGGACAT...GGAGCACCCAACCCTGCACAGCAGCCACTGATAACACAGACCATGGAGGAATGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp TGCCTGGAGCTGCCTTTGCCTGCTCCTGCCTGGGGTCAGACTGTGAGCCGTAGGGTCCTCTGCAGCTGCTaGTTTCTCATGAGACTCAGC +
Preference number: 4 (lower is better)
Translates to: CLELPLPAPAWGQTVSRRVLCSC*FLMRLS
Trigger: GCTGAGTCTCATGAGAAACCAGCAGCTGCAGAGGAC...CCTACGGCTCACAGTCTGACCCCAGGCAGGAGCAGGCAAAGGCAGCTCCAGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GAGCTGCCTTTGCCTGCTCCTGCCTGGGGTCAGACTGTGAGCCGTAGGCCCATGGTCCTCTGCAGCTGCTaGTTTCTCATGAGACTCAGC +
Preference number: 4 (lower is better)
Translates to: ELPLPAPAWGQTVSRRPMVLCSC*FLMRLS
Trigger: GCTGAGTCTCATGAGAAACCAGCAGCTGCAGAGGAC...CATGGGCCTACGGCTCACAGTCTGACCCCAGGCAGGAGCAGGCAAAGGCAGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGGTGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAGAGAAAGCCGGCCTTTaGGATGTTGTTGGTGAACAC +
Preference number: 4 (lower is better)
Translates to: GCEIGYWAPSSQPLRDCREKAGL*DVVGEH
Trigger: GTGTTCACCAACAACATCCCAAAGGCCGGCTTTCTC...TCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GAGCTGCCTTTGCCTGCTCCTGCCTGGGGTCAGACTGTGAGCCGTAGGCCCATGTGGTCCTCAAGTCCTTaGCTGTGGCCACTCTCATTG +
Preference number: 4 (lower is better)
Translates to: ELPLPAPAWGQTVSRRPMWSSSP*LWPLSL
Trigger: CAATGAGAGTGGCCACAGCCAAGGACTTGAGGACCA...CATGGGCCTACGGCTCACAGTCTGACCCCAGGCAGGAGCAGGCAAAGGCAGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CAA 72 bp CAGCCTTGTAGACCCACCAGCCTGCACAGTCCCTTCTaGGAAGGGAAGAGAGGCCCCTTCAGATGGCCTGAG +
Preference number: 4 (lower is better)
Translates to: QPCRPTSLHSPF*EGKRGPFRWPE
Trigger: CTCAGGCCATCTGAAGGGGCCTCTCTTCCCTTCCAAGAAGGGACTGTGCAGGCTGGTGGGTCTACAAGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp GAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCAAAGGGAGAGGTGTTTTaGATGACACCCACAGCCTGT +
Preference number: 4 (lower is better)
Translates to: EIGYWAPSSQPLRDCRRSKGEVF*MTPTAC
Trigger: ACAGGCTGTGGGTGTCATTCAAAACACCTCTCCCTT...TGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp TCAGCTCATGCCCTAGGCTGCAGACAGCTCAACAGCTGTGTACAGTGGCACGGGCATTGTACCGAAGCATaGGCGCAAAGGAGCGGGCGA +
Preference number: 4 (lower is better)
Translates to: SAHALGCRQLNSCVQWHGHCTEA*AQRSGR
Trigger: TCGCCCGCTCCTTTGCGCTCATGCTTCGGTACAATG...CCCGTGCCACTGTACACAGCTGTTGAGCTGTCTGCAGCCTAGGGCATGAGCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp AGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTACTGGGCCCAGTGGGTCATGTAGGTaGCCGTCTCCTCCCACTGAG +
Preference number: 4 (lower is better)
Translates to: RGSIWSKAALGVRSATGPSGSCR*PSPPTE
Trigger: CTCAGTGGGAGGAGACGGTCACCTACATGACCCACT...GGGCCCAGTAGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095439.11
CDS-3UTR GCA 90 bp ATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTGACTGGGGTTACAGACGCCCCAGACAGCTGTaGACCTTCTCCACCACCGCC +
Preference number: 4 (lower is better)
Translates to: ISQQSGQVQRGLCDWGYRRPRQL*TFSTTA
Trigger: GGCGGTGGTGGAGAAGGTGCACAGCTGTCTGGGGCG...TCTGTAACCCCAGTCACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GGGAATGTGGGACCTGCCCAGCCTTGTAGACCCACCAGCCTGCACAGTCCCTTCTCCACCTCTGTCCTCTaGAGCTGCTGGTTTCTCATG +
Preference number: 4 (lower is better)
Translates to: GNVGPAQPCRPTSLHSPFSTSVL*SCWFLM
Trigger: CATGAGAAACCAGCAGCTGCAGAGGACAGAGGTGGA...GAAGGGACTGTGCAGGCTGGTGGGTCTACAAGGCTGGGCAGGTCCCACATTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGGAATGTGGGACCTGCCCAGCCTTGTAGACCCACCAGCCTGCACAGTCCCTTCGCCTTCATCCTCTTCTaGGCATCTTCATCCACGCTG +
Preference number: 4 (lower is better)
Translates to: GNVGPAQPCRPTSLHSPFAFILF*ASSSTL
Trigger: CAGCGTGGATGAAGATGCCCAGAAGAGGATGAAGGC...GAAGGGACTGTGCAGGCTGGTGGGTCTACAAGGCTGGGCAGGTCCCACATTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GCAATCCACAGTGTCATTGTCGTTAAAAACACAGCCAGGCTCCCACCCTGCCCCTACTGCTCATGGTCCTaGGCCACCTGGGCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: AIHSVIVVKNTARLPPCPYCSWS*ATWARR
Trigger: CCTCCTGGCCCAGGTGGCCCAGGACCATGAGCAGTA...GGGGCAGGGTGGGAGCCTGGCTGTGTTTTTAACGACAATGACACTGTGGATTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp AGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTACTGGGCCCGAGAACAGCCTCCACTaGGCCACCAGCTCATCCTCT +
Preference number: 4 (lower is better)
Translates to: RGSIWSKAALGVRSATGPENSLH*ATSSSS
Trigger: AGAGGATGAGCTGGTGGCCCAGTGGAGGCTGTTCTC...GGGCCCAGTAGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GAGCTGCCTTTGCCTGCTCCTGCCTGGGGTCAGACTGTGAGCCGTAGGCCCATGCATGGTTGCCCCTTCTaGGGAAGACTTCTTCATCAC +
Preference number: 4 (lower is better)
Translates to: ELPLPAPAWGQTVSRRPMHGCPF*GRLLHH
Trigger: GTGATGAAGAAGTCTTCCCCAGAAGGGGCAACCATG...CATGGGCCTACGGCTCACAGTCTGACCCCAGGCAGGAGCAGGCAAAGGCAGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp CAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGCAGGCAGGCTGGCCGTaGTGTCCAGGAGCCTCTGGG +
Preference number: 4 (lower is better)
Translates to: QVCSGNRGSIWSKAALGVQAGWP*CPGASG
Trigger: CCCAGAGGCTCCTGGACATCACGGCCAGCCTGCCTG...CACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp GAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCAAGTTTGCTCTTCCGCTaGAGAAGGCTGTTATGCAGT +
Preference number: 4 (lower is better)
Translates to: EIGYWAPSSQPLRDCRRSSLLFR*RRLLCS
Trigger: ACTGCATAACAGCCTTCTTCAGCGGAAGAGCAAACT...TGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GCATTCCTCCATGGTCTGTGTTATCAGTGGCTGCTGTGCAGGGTTGGGTGCTCCAGGTCGGTCTTCAGCTaGAGCATCGCCAGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: AFLHGLCYQWLLCRVGCSRSVFS*SIASCS
Trigger: AGAGCAGCTGGCGATGCTGCAGCTGAAGACCGACCT...GGAGCACCCAACCCTGCACAGCAGCCACTGATAACACAGACCATGGAGGAATGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GAGCTGCCTTTGCCTGCTCCTGCCTGGGGTCAGACTGTGAGCCGTAGGCCCATGTTGGAGTTTTCTGCCTaGAGCCACTGTTCAAAGTCC +
Preference number: 4 (lower is better)
Translates to: ELPLPAPAWGQTVSRRPMLEFSA*SHCSKS
Trigger: GGACTTTGAACAGTGGCTGCAGGCAGAAAACTCCAA...CATGGGCCTACGGCTCACAGTCTGACCCCAGGCAGGAGCAGGCAAAGGCAGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GTTCACCAGTCCCTGATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTTTGTGCAGCAGCACCTaGGCGTGGCTCAGCTGCCAT +
Preference number: 4 (lower is better)
Translates to: VHQSLISQQSGQVQRGLCLCSST*AWLSCH
Trigger: ATGGCAGCTGAGCCACGCCCAGGTGCTGCTGCACAA...ACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAATCAGGGACTGGTGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCATGGTCTACTTTCTGCTaGTGCTTAGAGTTCCCATGG +
Preference number: 4 (lower is better)
Translates to: EIGYWAPSSQPLRDCRRSWSTFC*CLEFPW
Trigger: CCATGGGAACTCTAAGCACCAGCAGAAAGTAGACCA...TGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp ATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTGACTGGGGTTACAGAAGCTGGCCCAGTGCTTaGAGCAGGGACACCTGGACC +
Preference number: 4 (lower is better)
Translates to: ISQQSGQVQRGLCDWGYRSWPSA*SRDTWT
Trigger: GGTCCAGGTGTCCCTGCTCCAAGCACTGGGCCAGCT...TCTGTAACCCCAGTCACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp ACTGCTCTGGCTAAGCCAGTGGCCCACCATCACGGCTTCTCTTTATCTAGCCCACTCCTCCAGCTCCCCTaGGATCTTCTCTGCACCCAA +
Preference number: 4 (lower is better)
Translates to: TALAKPVAHHHGFSLSSPLLQLP*DLLCTQ
Trigger: TTGGGTGCAGAGAAGATCTCAGGGGAGCTGGAGGAG...TGGGCTAGATAAAGAGAAGCCGTGATGGTGGGCCACTGGCTTAGCCAGAGCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp GCAATCCACAGTGTCATTGTCGTTAAAAACACAGCCAGGCTCCCACCCTGCCCCCTCAGGAGCTGGGGATaGTCTTCAGGGAGGTCGTGT +
Preference number: 4 (lower is better)
Translates to: AIHSVIVVKNTARLPPCPLRSWG*SSGRSC
Trigger: ACACGACCTCCCTGAAGATCATCCCCAGCTCCTGAG...GGGGCAGGGTGGGAGCCTGGCTGTGTTTTTAACGACAATGACACTGTGGATTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp TCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTGTTCTGTGGCCAGCTTaGAGTTCCGCCCCAGACAGC +
Preference number: 4 (lower is better)
Translates to: SGNRGSIWSKAALGVRSAVLWPA*SSAPDS
Trigger: GCTGTCTGGGGCGGAACTGCAAGCTGGCCACAGAAC...AGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCAATCTGGTCTACTTTCTaGTGGTGCTTAGAGTTCCCA +
Preference number: 4 (lower is better)
Translates to: EIGYWAPSSQPLRDCRRSIWSTF*WCLEFP
Trigger: TGGGAACTCTAAGCACCAGCAGAAAGTAGACCAGAT...TGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp CACAGTTCTGATGGAGTGGTGGACCAGTGGTCTTTCTTGGCCAGTGAGCATCAGTCCTCCAGGGACCTCTaGAGGGCTTGCTGGTCACAG +
Preference number: 4 (lower is better)
Translates to: HSSDGVVDQWSFLASEHQSSRDL*RACWSQ
Trigger: CTGTGACCAGCAAGCCCTGCAGAGGTCCCTGGAGGA...CTGATGCTCACTGGCCAAGAAAGACCACTGGTCCACCACTCCATCAGAACTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp AGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTACTGGGCCCTCCACCTCTGTCCTCTaGAGCTGCTGGTTTCTCATG +
Preference number: 4 (lower is better)
Translates to: RGSIWSKAALGVRSATGPSTSVL*SCWFLM
Trigger: CATGAGAAACCAGCAGCTGCAGAGGACAGAGGTGGA...GGGCCCAGTAGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp TGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGCGGGCCTCCAGCTCCTaGAGCTTCACCTCTCTGGTC +
Preference number: 4 (lower is better)
Translates to: CSGNRGSIWSKAALGVRSRASSS*SFTSLV
Trigger: GACCAGAGAGGTGAAGCTGCAGGAGCTGGAGGCCCG...CGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GTTCACCAGTCCCTGATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTAGCAGGAGCAACAGCTaGAATGGCAGTGCCACACGG +
Preference number: 4 (lower is better)
Translates to: VHQSLISQQSGQVQRGLCSRSNS*NGSATR
Trigger: CCGTGTGGCACTGCCATTGCAGCTGTTGCTCCTGCT...ACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAATCAGGGACTGGTGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTACTAGCAGCACCTGGGCGTaGCTCAGCTGCCATTGCTTC +
Preference number: 4 (lower is better)
Translates to: GNRGSIWSKAALGVRSATSSTWA*LSCHCF
Trigger: GAAGCAATGGCAGCTGAGCCACGCCCAGGTGCTGCT...AGTAGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp AAAGTCAGGGTCACGAGCCCCAAGACACTGCTTTCCTGTTTGCTGATGTCCAACTACTGCTCATGGTCCTaGGCCACCTGGGCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: KVRVTSPKTLLSCLLMSNYCSWS*ATWARR
Trigger: CCTCCTGGCCCAGGTGGCCCAGGACCATGAGCAGTA...GTTGGACATCAGCAAACAGGAAAGCAGTGTCTTGGGGCTCGTGACCCTGACTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp CAGTCCCTGATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTGACTGGGTAGAAAGGTGTGAATaGAGGCCAGGTCAGGCAGGC +
Preference number: 4 (lower is better)
Translates to: QSLISQQSGQVQRGLCDWVERCE*RPGQAG
Trigger: GCCTGCCTGACCTGGCCTCCATTCACACCTTTCTAC...CCAGTCACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAATCAGGGACTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp TCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTGTGGCTGCTCTCTCCTaGCCAAAGATGCTGCCCAGC +
Preference number: 4 (lower is better)
Translates to: SGNRGSIWSKAALGVRSAVAALS*PKMLPS
Trigger: GCTGGGCAGCATCTTTGGCCAGGAGAGAGCAGCCAC...AGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp CAGTCCCTGATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTGACTGGGTCGTGTCCTTCCAGTaGGTTTGCCCCATGCTGTCT +
Preference number: 4 (lower is better)
Translates to: QSLISQQSGQVQRGLCDWVVSFQ*VCPMLS
Trigger: AGACAGCATGGGGCAAACCCACTGGAAGGACACGAC...CCAGTCACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAATCAGGGACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp TCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTCTCCTCCAGCTCCCCTaGGATCTTCTCTGCACCCAA +
Preference number: 4 (lower is better)
Translates to: SGNRGSIWSKAALGVRSALLQLP*DLLCTQ
Trigger: TTGGGTGCAGAGAAGATCTCAGGGGAGCTGGAGGAG...AGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp GCCCACATTCGTAGCAAACAGCTCTCCCCCAATCCCTCTTCAATTCAGGTCATGTACACGGGGTTCCTCTaGAGCCAGTGCAGCCCGAGT +
Preference number: 4 (lower is better)
Translates to: AHIRSKQLSPNPSSIQVMYTGFL*SQCSPS
Trigger: ACTCGGGCTGCACTGGCTTCAGAGGAACCCCGTGTA...CATGACCTGAATTGAAGAGGGATTGGGGGAGAGCTGTTTGCTACGAATGTGGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp GGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTACTTGGGGTAGAAAGGTGTaGATGGAGGCCAGGTCAGGC +
Preference number: 4 (lower is better)
Translates to: GNRGSIWSKAALGVRSATWGRKV*MEARSG
Trigger: GCCTGACCTGGCCTCCATTCACACCTTTCTACCCCA...AGTAGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp GTTCACCAGTCCCTGATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTGGTGGCCAGAGTCCTTaGGCTTGGACTTGTACAGCA +
Preference number: 4 (lower is better)
Translates to: VHQSLISQQSGQVQRGLCGGQSP*AWTCTA
Trigger: TGCTGTACAAGTCCAAGCTCAAGGACTCTGGCCACC...ACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAATCAGGGACTGGTGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GCAATCCACAGTGTCATTGTCGTTAAAAACACAGCCAGGCTCCCACCCTGCCCCTGGGCGTGGCTCAGCTaGCATTGCTTCTCCTTCAAG +
Preference number: 4 (lower is better)
Translates to: AIHSVIVVKNTARLPPCPWAWLS*HCFSFK
Trigger: CTTGAAGGAGAAGCAATGGCAGCTGAGCCACGCCCA...GGGGCAGGGTGGGAGCCTGGCTGTGTTTTTAACGACAATGACACTGTGGATTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp ATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTGACTGGGGTTACAGATCTCCTGGCCAAAGATaGTGCCCAGCAGGTCGGTCT +
Preference number: 4 (lower is better)
Translates to: ISQQSGQVQRGLCDWGYRSPGQR*CPAGRS
Trigger: AGACCGACCTGCTGGGCAGCATCTTTGGCCAGGAGA...TCTGTAACCCCAGTCACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GCAATCCACAGTGTCATTGTCGTTAAAAACACAGCCAGGCTCCCACCCTGCCCCCTTAGGAGCTGGACCTaGTTTCCAGGAAGGTCCCTC +
Preference number: 4 (lower is better)
Translates to: AIHSVIVVKNTARLPPCPLRSWT*FPGRSL
Trigger: GAGGGACCTTCCTGGAAAGCAGGTCCAGCTCCTAAG...GGGGCAGGGTGGGAGCCTGGCTGTGTTTTTAACGACAATGACACTGTGGATTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp TCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTTCTTCCTGCAGCCCCTaGAACCTTAGGAGCTGGACC +
Preference number: 4 (lower is better)
Translates to: SGNRGSIWSKAALGVRSASSCSP*NLRSWT
Trigger: GGTCCAGCTCCTAAGGTTGCAGGGGCTGCAGGAAGA...AGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp TCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTCCAGCTCATCCTCTGTaGCTGTCTTCACCGTGGGCT +
Preference number: 4 (lower is better)
Translates to: SGNRGSIWSKAALGVRSAPAHPL*LSSPWA
Trigger: AGCCCACGGTGAAGACAGCCACAGAGGATGAGCTGG...AGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGGTGGCTGCTCTCTCCTaGCCAAAGATGCTGCCCAGC +
Preference number: 4 (lower is better)
Translates to: GKFVLETEAAFGLRLLWVVAALS*PKMLPS
Trigger: GCTGGGCAGCATCTTTGGCCAGGAGAGAGCAGCCAC...CACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp CAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGCTGGCCCAGTGCTTaGAGCAGGGACACCTGGACC +
Preference number: 4 (lower is better)
Translates to: QVCSGNRGSIWSKAALGVSWPSA*SRDTWT
Trigger: GGTCCAGGTGTCCCTGCTCCAAGCACTGGGCCAGCT...CACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp AGCCCCAAGACACTGCTTTCCTGTTTGCTGATGTCCAACCTTTTCTGGGTACCAAGCTGGCCCAGTGCTTaGAGCAGGGACACCTGGACC +
Preference number: 4 (lower is better)
Translates to: SPKTLLSCLLMSNLFWVPSWPSA*SRDTWT
Trigger: GGTCCAGGTGTCCCTGCTCCAAGCACTGGGCCAGCT...TGGTACCCAGAAAAGGTTGGACATCAGCAAACAGGAAAGCAGTGTCTTGGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp CAGTCCCTGATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTGACTGGTTCTTCATCACAAGCTaGCCCAGTGCTTGGAGCAGG +
Preference number: 4 (lower is better)
Translates to: QSLISQQSGQVQRGLCDWFFITS*PSAWSR
Trigger: CCTGCTCCAAGCACTGGGCCAGCTTGTGATGAAGAA...CCAGTCACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAATCAGGGACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GTCCCTTCTTGGAAGGGAAGAGAGGCCCCTTCAGATGGCCTGAGTTTCTCCTCTTTCCTCAGCTCCTCCTaGACCATGGTTGCCCCTTCT +
Preference number: 4 (lower is better)
Translates to: VPSWKGREAPSDGLSFSSFLSSS*TMVAPS
Trigger: AGAAGGGGCAACCATGGTCCAGGAGGAGCTGAGGAA...AGAGGAGAAACTCAGGCCATCTGAAGGGGCCTCTCTTCCCTTCCAAGAAGGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CAA 72 bp CACAGTTCTGATGGAGTGGTGGACCAGTGGTCTTTCTaGGCCAGTGAGCATCAGGGCTCTGCTATCTGGGTC +
Preference number: 4 (lower is better)
Translates to: HSSDGVVDQWSF*ASEHQGSAIWV
Trigger: GACCCAGATAGCAGAGCCCTGATGCTCACTGGCCAAGAAAGACCACTGGTCCACCACTCCATCAGAACTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp TGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGTCCAGGAGCACAGCCTaGTTGTCCACGTTGTGCAGC +
Preference number: 4 (lower is better)
Translates to: CSGNRGSIWSKAALGVRSSRSTA*LSTLCS
Trigger: GCTGCACAACGTGGACAATCAGGCTGTGCTCCTGGA...CGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp TCAGCTCATGCCCTAGGCTGCAGACAGCTCAACAGCTGTGTACAGTGGCACGGGTCTGAAGGCTTTTCTTaGAGTCTCCCAGTTCTGCCT +
Preference number: 4 (lower is better)
Translates to: SAHALGCRQLNSCVQWHGSEGFS*SLPVLP
Trigger: AGGCAGAACTGGGAGACTTCAAGAAAAGCCTTCAGA...CCCGTGCCACTGTACACAGCTGTTGAGCTGTCTGCAGCCTAGGGCATGAGCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp ATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTACAAGTTTCTTCAGTTaGGTTTGTAACCGGTCTACA +
Preference number: 4 (lower is better)
Translates to: IGYWAPSSQPLRDCRRSPTSFFS*VCNRST
Trigger: TGTAGACCGGTTACAAACTCAACTGAAGAAACTTGT...AGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp TACAGACAAAGTCAGGGTCACGAGCCCCAAGACACTGCTTTCCTGTTTGCTGATCACGCTGTCAGAGAGTaGCTGCAGGTCCGGGAAGGT +
Preference number: 4 (lower is better)
Translates to: YRQSQGHEPQDTAFLFADHAVRE*LQVREG
Trigger: ACCTTCCCGGACCTGCAGTCACTCTCTGACAGCGTG...ATCAGCAAACAGGAAAGCAGTGTCTTGGGGCTCGTGACCCTGACTTTGTCTGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp CAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGCACGCTGTCAGAGAGTaGCTGCAGGTCCGGGAAGGT +
Preference number: 4 (lower is better)
Translates to: QVCSGNRGSIWSKAALGVHAVRE*LQVREG
Trigger: ACCTTCCCGGACCTGCAGTCACTCTCTGACAGCGTG...CACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp GGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGCTCAGGAGCTGGGGATaGTCTTCAGGGAGGTCGTGT +
Preference number: 4 (lower is better)
Translates to: GKFVLETEAAFGLRLLWVLRSWG*SSGRSC
Trigger: ACACGACCTCCCTGAAGATCATCCCCAGCTCCTGAG...CACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp TACAGACAAAGTCAGGGTCACGAGCCCCAAGACACTGCTTTCCTGTTTGCTGATGTTCTGTGGCCAGCTTaGAGTTCCGCCCCAGACAGC +
Preference number: 4 (lower is better)
Translates to: YRQSQGHEPQDTAFLFADVLWPA*SSAPDS
Trigger: GCTGTCTGGGGCGGAACTGCAAGCTGGCCACAGAAC...ATCAGCAAACAGGAAAGCAGTGTCTTGGGGCTCGTGACCCTGACTTTGTCTGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GCAATCCACAGTGTCATTGTCGTTAAAAACACAGCCAGGCTCCCACCCTGCCCCGAAGTCTCCCAGTTCTaGCTCCAGCTGTTGGATCTG +
Preference number: 4 (lower is better)
Translates to: AIHSVIVVKNTARLPPCPEVSQF*LQLLDL
Trigger: CAGATCCAACAGCTGGAGGCAGAACTGGGAGACTTC...GGGGCAGGGTGGGAGCCTGGCTGTGTTTTTAACGACAATGACACTGTGGATTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTACTCTGTCAGAGAGTGACTaGAGGTCCGGGAAGGTGACA +
Preference number: 4 (lower is better)
Translates to: GNRGSIWSKAALGVRSATLSESD*RSGKVT
Trigger: TGTCACCTTCCCGGACCTGCAGTCACTCTCTGACAG...AGTAGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp TCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTTGCAGCATCGCCAGCTaGTCTTTCAGGCGAGAGCTT +
Preference number: 4 (lower is better)
Translates to: SGNRGSIWSKAALGVRSACSIAS*SFRREL
Trigger: AAGCTCTCGCCTGAAAGAGCAGCTGGCGATGCTGCA...AGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp TGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGTCTCCTGGCCAAAGATaGTGCCCAGCAGGTCGGTCT +
Preference number: 4 (lower is better)
Translates to: CSGNRGSIWSKAALGVRSSPGQR*CPAGRS
Trigger: AGACCGACCTGCTGGGCAGCATCTTTGGCCAGGAGA...CGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp CCCCAATCCCTCTTCAATTCAGGTCATGGAACTCAGGACTCACACCTGTTAGGCCTCCAGGAGGGTGGCTaGTCTCTCCTGGCCAAAGAT +
Preference number: 4 (lower is better)
Translates to: PQSLFNSGHGTQDSHLLGLQEGG*SLLAKD
Trigger: ATCTTTGGCCAGGAGAGAGCAGCCACCCTCCTGGAG...GCCTAACAGGTGTGAGTCCTGAGTTCCATGACCTGAATTGAAGAGGGATTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp ATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTGACTGGGGTTACAGAACAGAACTTGTCACCTaGTCCAGGAGGGTGGCTGCT +
Preference number: 4 (lower is better)
Translates to: ISQQSGQVQRGLCDWGYRTELVT*SRRVAA
Trigger: AGCAGCCACCCTCCTGGAGCAGGTGACAAGTTCTGT...TCTGTAACCCCAGTCACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GCCCACATTCGTAGCAAACAGCTCTCCCCCAATCCCTCTTCAATTCAGGTCATGTCTTCCTGCAGCCCCTaGAACCTTAGGAGCTGGACC +
Preference number: 4 (lower is better)
Translates to: AHIRSKQLSPNPSSIQVMSSCSP*NLRSWT
Trigger: GGTCCAGCTCCTAAGGTTGCAGGGGCTGCAGGAAGA...CATGACCTGAATTGAAGAGGGATTGGGGGAGAGCTGTTTGCTACGAATGTGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp TCAGCTCATGCCCTAGGCTGCAGACAGCTCAACAGCTGTGTACAGTGGCACGGGTCTACTTTCTGCTGGTaGTTAGAGTTCCCATGGGCA +
Preference number: 4 (lower is better)
Translates to: SAHALGCRQLNSCVQWHGSTFCW*LEFPWA
Trigger: TGCCCATGGGAACTCTAAGCACCAGCAGAAAGTAGA...CCCGTGCCACTGTACACAGCTGTTGAGCTGTCTGCAGCCTAGGGCATGAGCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp AGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTACTGGGCCCTCTACTTTCTGCTGGTaGTTAGAGTTCCCATGGGCA +
Preference number: 4 (lower is better)
Translates to: RGSIWSKAALGVRSATGPSTFCW*LEFPWA
Trigger: TGCCCATGGGAACTCTAAGCACCAGCAGAAAGTAGA...GGGCCCAGTAGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp CAGTCCCTGATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTGACTGGTCTGTCCTCTGCAGCTaGTGGTTTCTCATGAGACTC +
Preference number: 4 (lower is better)
Translates to: QSLISQQSGQVQRGLCDWSVLCS*WFLMRL
Trigger: GAGTCTCATGAGAAACCAGCAGCTGCAGAGGACAGA...CCAGTCACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAATCAGGGACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GCAATCCACAGTGTCATTGTCGTTAAAAACACAGCCAGGCTCCCACCCTGCCCCTTGTTGGTGAACACCTaGTTCTTCCCCGTGTCCACC +
Preference number: 4 (lower is better)
Translates to: AIHSVIVVKNTARLPPCPLLVNT*FFPVST
Trigger: GGTGGACACGGGGAAGAAGCAGGTGTTCACCAACAA...GGGGCAGGGTGGGAGCCTGGCTGTGTTTTTAACGACAATGACACTGTGGATTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp ACTGCTCTGGCTAAGCCAGTGGCCCACCATCACGGCTTCTCTTTATCTAGCCCATTGTTGGTGAACACCTaGTTCTTCCCCGTGTCCACC +
Preference number: 4 (lower is better)
Translates to: TALAKPVAHHHGFSLSSPLLVNT*FFPVST
Trigger: GGTGGACACGGGGAAGAAGCAGGTGTTCACCAACAA...TGGGCTAGATAAAGAGAAGCCGTGATGGTGGGCCACTGGCTTAGCCAGAGCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGAGCAGGAGCAACAGCTaGAATGGCAGTGCCACACGG +
Preference number: 4 (lower is better)
Translates to: GKFVLETEAAFGLRLLWVSRSNS*NGSATR
Trigger: CCGTGTGGCACTGCCATTGCAGCTGTTGCTCCTGCT...CACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp CAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGCAGCACCTGGGCGTaGCTCAGCTGCCATTGCTTC +
Preference number: 4 (lower is better)
Translates to: QVCSGNRGSIWSKAALGVSSTWA*LSCHCF
Trigger: GAAGCAATGGCAGCTGAGCCACGCCCAGGTGCTGCT...CACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GCAATCCACAGTGTCATTGTCGTTAAAAACACAGCCAGGCTCCCACCCTGCCCCGCCTTCATCCTCTTCTaGGCATCTTCATCCACGCTG +
Preference number: 4 (lower is better)
Translates to: AIHSVIVVKNTARLPPCPAFILF*ASSSTL
Trigger: CAGCGTGGATGAAGATGCCCAGAAGAGGATGAAGGC...GGGGCAGGGTGGGAGCCTGGCTGTGTTTTTAACGACAATGACACTGTGGATTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GTAGAAAAAGGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGTGGTCCTGGGCCACCTaGGCCAGGAGGTCCACCCTG +
Preference number: 4 (lower is better)
Translates to: VEKGKFVLETEAAFGLRLWSWAT*ARRSTL
Trigger: CAGGGTGGACCTCCTGGCCCAGGTGGCCCAGGACCA...CAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCCTTTTTCTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp AAAGTCAGGGTCACGAGCCCCAAGACACTGCTTTCCTGTTTGCTGATGTCCAACCCAGCTCATCCTCTGTaGCTGTCTTCACCGTGGGCT +
Preference number: 4 (lower is better)
Translates to: KVRVTSPKTLLSCLLMSNPAHPL*LSSPWA
Trigger: AGCCCACGGTGAAGACAGCCACAGAGGATGAGCTGG...GTTGGACATCAGCAAACAGGAAAGCAGTGTCTTGGGGCTCGTGACCCTGACTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp ATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTGACTGGGGTTACAGATCATTTAGGGGCCGCTaGAAACGCTGCCACAGCTCT +
Preference number: 4 (lower is better)
Translates to: ISQQSGQVQRGLCDWGYRSFRGR*KRCHSS
Trigger: AGAGCTGTGGCAGCGTTTCCAGCGGCCCCTAAATGA...TCTGTAACCCCAGTCACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp TCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTTCATTTAGGGGCCGCTaGAAACGCTGCCACAGCTCT +
Preference number: 4 (lower is better)
Translates to: SGNRGSIWSKAALGVRSASFRGR*KRCHSS
Trigger: AGAGCTGTGGCAGCGTTTCCAGCGGCCCCTAAATGA...AGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp TGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTTGGATCCTGGCCTaGAGGTCTAGGAGCTTCCTG +
Preference number: 4 (lower is better)
Translates to: CSGNRGSIWSKAALGVRSAWILA*RSRSFL
Trigger: CAGGAAGCTCCTAGACCTCCAGGCCAGGATCCAAGC...CGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTACTGTCGTGTCCTTCCAGTaGGTTTGCCCCATGCTGTCT +
Preference number: 4 (lower is better)
Translates to: GNRGSIWSKAALGVRSATVVSFQ*VCPMLS
Trigger: AGACAGCATGGGGCAAACCCACTGGAAGGACACGAC...AGTAGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp CCCCAATCCCTCTTCAATTCAGGTCATGGAACTCAGGACTCACACCTGTTAGGCTGCCTCCGACTCTTCTaGAATGCAGTCAGCTCCCCC +
Preference number: 4 (lower is better)
Translates to: PQSLFNSGHGTQDSHLLGCLRLF*NAVSSP
Trigger: GGGGGAGCTGACTGCATTCCAGAAGAGTCGGAGGCA...GCCTAACAGGTGTGAGTCCTGAGTTCCATGACCTGAATTGAAGAGGGATTGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGGAGCAACAGCTGCAATaGCAGTGCCACACGGCATGC +
Preference number: 4 (lower is better)
Translates to: GKFVLETEAAFGLRLLWVEQQLQ*QCHTAC
Trigger: GCATGCCGTGTGGCACTGCCATTGCAGCTGTTGCTC...CACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GCCCACATTCGTAGCAAACAGCTCTCCCCCAATCCCTCTTCAATTCAGGTCATGGAGCAACAGCTGCAATaGCAGTGCCACACGGCATGC +
Preference number: 4 (lower is better)
Translates to: AHIRSKQLSPNPSSIQVMEQQLQ*QCHTAC
Trigger: GCATGCCGTGTGGCACTGCCATTGCAGCTGTTGCTC...CATGACCTGAATTGAAGAGGGATTGGGGGAGAGCTGTTTGCTACGAATGTGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CAA 72 bp GCTGCTGTGCAGGGTTGGGTGCTCCGTACCATCATTTaGTGGTGCTCCATTGGGCTCCATCTTTACAGCTCT +
Preference number: 4 (lower is better)
Translates to: AAVQGWVLRTII*WCSIGLHLYSS
Trigger: AGAGCTGTAAAGATGGAGCCCAATGGAGCACCACAAAATGATGGTACGGAGCACCCAACCCTGCACAGCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp CAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGTCCAGGAGCACAGCCTaGTTGTCCACGTTGTGCAGC +
Preference number: 4 (lower is better)
Translates to: QVCSGNRGSIWSKAALGVSRSTA*LSTLCS
Trigger: GCTGCACAACGTGGACAATCAGGCTGTGCTCCTGGA...CACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp CAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGCTCCTCCAGCTCCCCTaGGATCTTCTCTGCACCCAA +
Preference number: 4 (lower is better)
Translates to: QVCSGNRGSIWSKAALGVLLQLP*DLLCTQ
Trigger: TTGGGTGCAGAGAAGATCTCAGGGGAGCTGGAGGAG...CACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp GGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTACTTCCTGGGCCAGCCTCTaGAGGCTTTTCTTGAAGTCT +
Preference number: 4 (lower is better)
Translates to: GNRGSIWSKAALGVRSATSWASL*RLFLKS
Trigger: AGACTTCAAGAAAAGCCTTCAGAGGCTGGCCCAGGA...AGTAGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp ATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTGACTGGGGTTACAGACCGACAGCCTGTGACTaGAGGTACAATGTTCCCGTA +
Preference number: 4 (lower is better)
Translates to: ISQQSGQVQRGLCDWGYRPTACD*RYNVPV
Trigger: TACGGGAACATTGTACCTTCAGTCACAGGCTGTCGG...TCTGTAACCCCAGTCACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp AAAGTCAGGGTCACGAGCCCCAAGACACTGCTTTCCTGTTTGCTGATGTCCAACGGTGGCCAGAGTCCTTaGGCTTGGACTTGTACAGCA +
Preference number: 4 (lower is better)
Translates to: KVRVTSPKTLLSCLLMSNGGQSP*AWTCTA
Trigger: TGCTGTACAAGTCCAAGCTCAAGGACTCTGGCCACC...GTTGGACATCAGCAAACAGGAAAGCAGTGTCTTGGGGCTCGTGACCCTGACTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGGGCGTGGCTCAGCTaGCATTGCTTCTCCTTCAAG +
Preference number: 4 (lower is better)
Translates to: GKFVLETEAAFGLRLLWVWAWLS*HCFSFK
Trigger: CTTGAAGGAGAAGCAATGGCAGCTGAGCCACGCCCA...CACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp CAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGCCTGGCCAAAGATGCTaGCCAGCAGGTCGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: QVCSGNRGSIWSKAALGVPGQRC*PAGRSS
Trigger: TGAAGACCGACCTGCTGGGCAGCATCTTTGGCCAGG...CACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp AAAGTCAGGGTCACGAGCCCCAAGACACTGCTTTCCTGTTTGCTGATGTCCAACCTTAGGAGCTGGACCTaGTTTCCAGGAAGGTCCCTC +
Preference number: 4 (lower is better)
Translates to: KVRVTSPKTLLSCLLMSNLRSWT*FPGRSL
Trigger: GAGGGACCTTCCTGGAAAGCAGGTCCAGCTCCTAAG...GTTGGACATCAGCAAACAGGAAAGCAGTGTCTTGGGGCTCGTGACCCTGACTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp TACAGACAAAGTCAGGGTCACGAGCCCCAAGACACTGCTTTCCTGTTTGCTGATGACCTCTGCAGGGCTTaGTGGTCACAGGAGATCTGG +
Preference number: 4 (lower is better)
Translates to: YRQSQGHEPQDTAFLFADDLCRA*WSQEIW
Trigger: CCAGATCTCCTGTGACCAGCAAGCCCTGCAGAGGTC...ATCAGCAAACAGGAAAGCAGTGTCTTGGGGCTCGTGACCCTGACTTTGTCTGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTACTAGGTTCTCAAAGAGGTaGTGGCCTTCTGGGATTCGG +
Preference number: 4 (lower is better)
Translates to: GNRGSIWSKAALGVRSATRFSKR*WPSGIR
Trigger: CCGAATCCCAGAAGGCCAGCACCTCTTTGAGAACCT...AGTAGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp CGATCCAGTTTTAAAGCACTTAGGAATCATCCCAGAATTCCCTGGTTATGTGTCTGGTCCTGGGCCACCTaGGCCAGGAGGTCCACCCTG +
Preference number: 4 (lower is better)
Translates to: RSSFKALRNHPRIPWLCVWSWAT*ARRSTL
Trigger: CAGGGTGGACCTCCTGGCCCAGGTGGCCCAGGACCA...GACACATAACCAGGGAATTCTGGGATGATTCCTAAGTGCTTTAAAACTGGATCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GTAGAAAAAGGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGTCCCGGTACTGCTCATaGTCCTGGGCCACCTGGGCC +
Preference number: 4 (lower is better)
Translates to: VEKGKFVLETEAAFGLRLSRYCS*SWATWA
Trigger: GGCCCAGGTGGCCCAGGACCATGAGCAGTACCGGGA...CAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCCTTTTTCTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp TGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGTAGAAAGGTGTGAATaGAGGCCAGGTCAGGCAGGC +
Preference number: 4 (lower is better)
Translates to: CSGNRGSIWSKAALGVRSVERCE*RPGQAG
Trigger: GCCTGCCTGACCTGGCCTCCATTCACACCTTTCTAC...CGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGGTAGAAAGGTGTGAATaGAGGCCAGGTCAGGCAGGC +
Preference number: 4 (lower is better)
Translates to: GKFVLETEAAFGLRLLWVVERCE*RPGQAG
Trigger: GCCTGCCTGACCTGGCCTCCATTCACACCTTTCTAC...CACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp CAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGCTCTCGGTCAGCAGGTaGCCAGAGTCCTTGAGCTTG +
Preference number: 4 (lower is better)
Translates to: QVCSGNRGSIWSKAALGVLSVSR*PESLSL
Trigger: CAAGCTCAAGGACTCTGGCCACCTGCTGACCGAGAG...CACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GTAGAAAAAGGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGAGCGGGCGAAGTTGTTaGCCAGGGCGCAGCTGCGCT +
Preference number: 4 (lower is better)
Translates to: VEKGKFVLETEAAFGLRLSGRSC*PGRSCA
Trigger: AGCGCAGCTGCGCCCTGGCCAACAACTTCGCCCGCT...CAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCCTTTTTCTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
3UTR CAA 72 bp GTGGTGCTCCATTGGGCTCCATCTTTACAGCTCTTCTaGTTGCTCTCTTGGCATCCCTCTGGCACGCATCTT +
Preference number: 4 (lower is better)
Translates to: VVLHWAPSLQLF*LLSWHPSGTHL
Trigger: AAGATGCGTGCCAGAGGGATGCCAAGAGAGCAACAAGAAGAGCTGTAAAGATGGAGCCCAATGGAGCACCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CAA 72 bp GAATCATCCCAGAATTCCCTGGTTATGTGTCCAGCCTaGGGCATAACCTGGAATCACCCAGATGCCTCCCAC +
Preference number: 4 (lower is better)
Translates to: ESSQNSLVMCPA*GITWNHPDASH
Trigger: GTGGGAGGCATCTGGGTGATTCCAGGTTATGCCCAAGGCTGGACACATAACCAGGGAATTCTGGGATGATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp CTCCCAGGACTGACACAGGCCACTTCACCCTTATGCATGAGAATAAAAAGTCAACACGCTGTCAGAGAGTaGCTGCAGGTCCGGGAAGGT +
Preference number: 4 (lower is better)
Translates to: LPGLTQATSPLCMRIKSQHAVRE*LQVREG
Trigger: ACCTTCCCGGACCTGCAGTCACTCTCTGACAGCGTG...TTGACTTTTTATTCTCATGCATAAGGGTGAAGTGGCCTGTGTCAGTCCTGGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp CAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGGGTGGCCAGAGTCCTTaGGCTTGGACTTGTACAGCA +
Preference number: 4 (lower is better)
Translates to: QVCSGNRGSIWSKAALGVGGQSP*AWTCTA
Trigger: TGCTGTACAAGTCCAAGCTCAAGGACTCTGGCCACC...CACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp AGCCCCAAGACACTGCTTTCCTGTTTGCTGATGTCCAACCTTTTCTGGGTACCAAGGTACTCACTCCAGTaGAGCCACACCCACTCGATG +
Preference number: 4 (lower is better)
Translates to: SPKTLLSCLLMSNLFWVPRYSLQ*SHTHSM
Trigger: CATCGAGTGGGTGTGGCTGCACTGGAGTGAGTACCT...TGGTACCCAGAAAAGGTTGGACATCAGCAAACAGGAAAGCAGTGTCTTGGGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp TACAGACAAAGTCAGGGTCACGAGCCCCAAGACACTGCTTTCCTGTTTGCTGATTGCAGCATCGCCAGCTaGTCTTTCAGGCGAGAGCTT +
Preference number: 4 (lower is better)
Translates to: YRQSQGHEPQDTAFLFADCSIAS*SFRREL
Trigger: AAGCTCTCGCCTGAAAGAGCAGCTGGCGATGCTGCA...ATCAGCAAACAGGAAAGCAGTGTCTTGGGGCTCGTGACCCTGACTTTGTCTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp CAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGACAGAACTTGTCACCTaGTCCAGGAGGGTGGCTGCT +
Preference number: 4 (lower is better)
Translates to: QVCSGNRGSIWSKAALGVTELVT*SRRVAA
Trigger: AGCAGCCACCCTCCTGGAGCAGGTGACAAGTTCTGT...CACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GCCCACATTCGTAGCAAACAGCTCTCCCCCAATCCCTCTTCAATTCAGGTCATGTCCACCTCTGTCCTCTaGAGCTGCTGGTTTCTCATG +
Preference number: 4 (lower is better)
Translates to: AHIRSKQLSPNPSSIQVMSTSVL*SCWFLM
Trigger: CATGAGAAACCAGCAGCTGCAGAGGACAGAGGTGGA...CATGACCTGAATTGAAGAGGGATTGGGGGAGAGCTGTTTGCTACGAATGTGGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGAGGTTCTCAAAGAGGTaGTGGCCTTCTGGGATTCGG +
Preference number: 4 (lower is better)
Translates to: GKFVLETEAAFGLRLLWVRFSKR*WPSGIR
Trigger: CCGAATCCCAGAAGGCCAGCACCTCTTTGAGAACCT...CACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GTAGAAAAAGGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGATGTCCAGGAGCCTCTaGGCCAGGGCCTTCCACAGC +
Preference number: 4 (lower is better)
Translates to: VEKGKFVLETEAAFGLRLMSRSL*ARAFHS
Trigger: GCTGTGGAAGGCCCTGGCCCAGAGGCTCCTGGACAT...CAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCCTTTTTCTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp ACTGCTCTGGCTAAGCCAGTGGCCCACCATCACGGCTTCTCTTTATCTAGCCCATGGTCTACTTTCTGCTaGTGCTTAGAGTTCCCATGG +
Preference number: 4 (lower is better)
Translates to: TALAKPVAHHHGFSLSSPWSTFC*CLEFPW
Trigger: CCATGGGAACTCTAAGCACCAGCAGAAAGTAGACCA...TGGGCTAGATAAAGAGAAGCCGTGATGGTGGGCCACTGGCTTAGCCAGAGCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGGAGCAGGGACACCTaGACCTCTTTCTCTGGGATT +
Preference number: 4 (lower is better)
Translates to: GKFVLETEAAFGLRLLWVWSRDT*TSFSGI
Trigger: AATCCCAGAGAAAGAGGTCCAGGTGTCCCTGCTCCA...CACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTTCTTCATCACAAGCTaGCCCAGTGCTTGGAGCAGG +
Preference number: 4 (lower is better)
Translates to: GKFVLETEAAFGLRLLWVFFITS*PSAWSR
Trigger: CCTGCTCCAAGCACTGGGCCAGCTTGTGATGAAGAA...CACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp CTCCAATTCTGTGTGGCTATGGTAACCACTCAGAGGCTTCTTCAGCAACATCTGGAGCAACAGCTGCAATaGCAGTGCCACACGGCATGC +
Preference number: 4 (lower is better)
Translates to: LQFCVAMVTTQRLLQQHLEQQLQ*QCHTAC
Trigger: GCATGCCGTGTGGCACTGCCATTGCAGCTGTTGCTC...CAGATGTTGCTGAAGAAGCCTCTGAGTGGTTACCATAGCCACACAGAATTGGAG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp AAGGAAAATGTGGGGAGGTTTGCTCTAATAAACCTGGTATCAGTCCATTTCTGGAGCGGGCGAAGTTGTTaGCCAGGGCGCAGCTGCGCT +
Preference number: 4 (lower is better)
Translates to: KENVGRFALINLVSVHFWSGRSC*PGRSCA
Trigger: AGCGCAGCTGCGCCCTGGCCAACAACTTCGCCCGCT...CCAGAAATGGACTGATACCAGGTTTATTAGAGCAAACCTCCCCACATTTTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp CTCCCAGGACTGACACAGGCCACTTCACCCTTATGCATGAGAATAAAAAGTCAATGGGGTAGAAAGGTGTaGATGGAGGCCAGGTCAGGC +
Preference number: 4 (lower is better)
Translates to: LPGLTQATSPLCMRIKSQWGRKV*MEARSG
Trigger: GCCTGACCTGGCCTCCATTCACACCTTTCTACCCCA...TTGACTTTTTATTCTCATGCATAAGGGTGAAGTGGCCTGTGTCAGTCCTGGGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp CACAGTTCTGATGGAGTGGTGGACCAGTGGTCTTTCTTGGCCAGTGAGCATCAGAGTTTGCTCTTCCGCTaGAGAAGGCTGTTATGCAGT +
Preference number: 4 (lower is better)
Translates to: HSSDGVVDQWSFLASEHQSLLFR*RRLLCS
Trigger: ACTGCATAACAGCCTTCTTCAGCGGAAGAGCAAACT...CTGATGCTCACTGGCCAAGAAAGACCACTGGTCCACCACTCCATCAGAACTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp TGCGGTGACCTGGGAGTCCAGTCCCTCTTAGGGCTACAGTATTTGCTGTATTTACCGACAGCCTGTGACTaGAGGTACAATGTTCCCGTA +
Preference number: 4 (lower is better)
Translates to: CGDLGVQSLLGLQYLLYLPTACD*RYNVPV
Trigger: TACGGGAACATTGTACCTTCAGTCACAGGCTGTCGG...TAAATACAGCAAATACTGTAGCCCTAAGAGGGACTGGACTCCCAGGTCACCGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp CAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGTTGGGATGTTGTTGGTaGACACCTGCTTCTTCCCCG +
Preference number: 4 (lower is better)
Translates to: QVCSGNRGSIWSKAALGVLGCCW*TPASSP
Trigger: CGGGGAAGAAGCAGGTGTTCACCAACAACATCCCAA...CACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp TGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGCCTTCGTGTTGTCATTaGCCTGAAGCTGCTCCTGTA +
Preference number: 4 (lower is better)
Translates to: CSGNRGSIWSKAALGVRSPSCCH*PEAAPV
Trigger: TACAGGAGCAGCTTCAGGTCAATGACAACACGAAGG...CGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095439.11
CDS-3UTR GCA 90 bp CTCCAATTCTGTGTGGCTATGGTAACCACTCAGAGGCTTCTTCAGCAACATCTGAGGTACTCACTCCAGTaGAGCCACACCCACTCGATG +
Preference number: 4 (lower is better)
Translates to: LQFCVAMVTTQRLLQQHLRYSLQ*SHTHSM
Trigger: CATCGAGTGGGTGTGGCTGCACTGGAGTGAGTACCT...CAGATGTTGCTGAAGAAGCCTCTGAGTGGTTACCATAGCCACACAGAATTGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp TATCTAGCCCACGGCCCAAGTCTGTGTGACTTTAAAACTAGCCAAATACTCAAGTCCTCCAGGGACCTCTaGAGGGCTTGCTGGTCACAG +
Preference number: 4 (lower is better)
Translates to: YLAHGPSLCDFKTSQILKSSRDL*RACWSQ
Trigger: CTGTGACCAGCAAGCCCTGCAGAGGTCCCTGGAGGA...CTTGAGTATTTGGCTAGTTTTAAAGTCACACAGACTTGGGCCGTGGGCTAGATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GCCCACATTCGTAGCAAACAGCTCTCCCCCAATCCCTCTTCAATTCAGGTCATGGGTATTCCTGAATGGTaGCTACCACGCTGTCAGAGA +
Preference number: 4 (lower is better)
Translates to: AHIRSKQLSPNPSSIQVMGIPEW*LPRCQR
Trigger: TCTCTGACAGCGTGGTAGCCACCATTCAGGAATACC...CATGACCTGAATTGAAGAGGGATTGGGGGAGAGCTGTTTGCTACGAATGTGGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGGGTATTCCTGAATGGTaGCTACCACGCTGTCAGAGA +
Preference number: 4 (lower is better)
Translates to: GKFVLETEAAFGLRLLWVGIPEW*LPRCQR
Trigger: TCTCTGACAGCGTGGTAGCCACCATTCAGGAATACC...CACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp TATCTAGCCCACGGCCCAAGTCTGTGTGACTTTAAAACTAGCCAAATACTCAAGGTGGCTGCTCTCTCCTaGCCAAAGATGCTGCCCAGC +
Preference number: 4 (lower is better)
Translates to: YLAHGPSLCDFKTSQILKVAALS*PKMLPS
Trigger: GCTGGGCAGCATCTTTGGCCAGGAGAGAGCAGCCAC...CTTGAGTATTTGGCTAGTTTTAAAGTCACACAGACTTGGGCCGTGGGCTAGATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGCATGGTTGCCCCTTCTaGGGAAGACTTCTTCATCAC +
Preference number: 4 (lower is better)
Translates to: GKFVLETEAAFGLRLLWVHGCPF*GRLLHH
Trigger: GTGATGAAGAAGTCTTCCCCAGAAGGGGCAACCATG...CACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp CAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGGTCCTCTGCAGCTGCTaGTTTCTCATGAGACTCAGC +
Preference number: 4 (lower is better)
Translates to: QVCSGNRGSIWSKAALGVVLCSC*FLMRLS
Trigger: GCTGAGTCTCATGAGAAACCAGCAGCTGCAGAGGAC...CACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGGAGAAAGCCGGCCTTTaGGATGTTGTTGGTGAACAC +
Preference number: 4 (lower is better)
Translates to: GKFVLETEAAFGLRLLWVEKAGL*DVVGEH
Trigger: GTGTTCACCAACAACATCCCAAAGGCCGGCTTTCTC...CACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GTAGAAAAAGGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGGGTTTCTGGCCCTCCTaGCAAGTTGCCAAGAGGGCC +
Preference number: 4 (lower is better)
Translates to: VEKGKFVLETEAAFGLRLGFWPS*QVAKRA
Trigger: GGCCCTCTTGGCAACTTGCCAGGAGGGCCAGAAACC...CAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCCTTTTTCTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095439.11
CDS-3UTR TCA 90 bp GCCCACATTCGTAGCAAACAGCTCTCCCCCAATCCCTCTTCAATTCAGGTCATGTCTGAAGGCTTTTCTTaGAGTCTCCCAGTTCTGCCT +
Preference number: 4 (lower is better)
Translates to: AHIRSKQLSPNPSSIQVMSEGFS*SLPVLP
Trigger: AGGCAGAACTGGGAGACTTCAAGAAAAGCCTTCAGA...CATGACCTGAATTGAAGAGGGATTGGGGGAGAGCTGTTTGCTACGAATGTGGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp CTCCAATTCTGTGTGGCTATGGTAACCACTCAGAGGCTTCTTCAGCAACATCTGTCCTGGGCCAGCCTCTaGAGGCTTTTCTTGAAGTCT +
Preference number: 4 (lower is better)
Translates to: LQFCVAMVTTQRLLQQHLSWASL*RLFLKS
Trigger: AGACTTCAAGAAAAGCCTTCAGAGGCTGGCCCAGGA...CAGATGTTGCTGAAGAAGCCTCTGAGTGGTTACCATAGCCACACAGAATTGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp ATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTGACTGGGGTTACAGAATCTGGTCTACTTTCTaGTGGTGCTTAGAGTTCCCA +
Preference number: 4 (lower is better)
Translates to: ISQQSGQVQRGLCDWGYRIWSTF*WCLEFP
Trigger: TGGGAACTCTAAGCACCAGCAGAAAGTAGACCAGAT...TCTGTAACCCCAGTCACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GTAGAAAAAGGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGGACCTCTGCAGGGCTTaGTGGTCACAGGAGATCTGG +
Preference number: 4 (lower is better)
Translates to: VEKGKFVLETEAAFGLRLDLCRA*WSQEIW
Trigger: CCAGATCTCCTGTGACCAGCAAGCCCTGCAGAGGTC...CAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCCTTTTTCTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GTAGAAAAAGGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTCGGTCAGCAGGTaGCCAGAGTCCTTGAGCTTG +
Preference number: 4 (lower is better)
Translates to: VEKGKFVLETEAAFGLRLLSVSR*PESLSL
Trigger: CAAGCTCAAGGACTCTGGCCACCTGCTGACCGAGAG...CAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCCTTTTTCTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
3UTR CAA 72 bp GACCTGGGAGTCCAGTCCCTCTTAGGGCTACAGTATTaGCTGTATTTAAAGTGCCTCTCTGGGTCTGTGACA +
Preference number: 4 (lower is better)
Translates to: DLGVQSLLGLQY*LYLKCLSGSVT
Trigger: TGTCACAGACCCAGAGAGGCACTTTAAATACAGCAAATACTGTAGCCCTAAGAGGGACTGGACTCCCAGGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp AAGGAAAATGTGGGGAGGTTTGCTCTAATAAACCTGGTATCAGTCCATTTCTGGTCCAGGAGCACAGCCTaGTTGTCCACGTTGTGCAGC +
Preference number: 4 (lower is better)
Translates to: KENVGRFALINLVSVHFWSRSTA*LSTLCS
Trigger: GCTGCACAACGTGGACAATCAGGCTGTGCTCCTGGA...CCAGAAATGGACTGATACCAGGTTTATTAGAGCAAACCTCCCCACATTTTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp GTTCACCAGTCCCTGATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTACAAGTTTCTTCAGTTaGGTTTGTAACCGGTCTACA +
Preference number: 4 (lower is better)
Translates to: VHQSLISQQSGQVQRGLCTSFFS*VCNRST
Trigger: TGTAGACCGGTTACAAACTCAACTGAAGAAACTTGT...ACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAATCAGGGACTGGTGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp AAGGAAAATGTGGGGAGGTTTGCTCTAATAAACCTGGTATCAGTCCATTTCTGGCTGGGAATGGGGTCCTaGGGGTTGATGAGAAAGCCG +
Preference number: 4 (lower is better)
Translates to: KENVGRFALINLVSVHFWLGMGS*GLMRKP
Trigger: CGGCTTTCTCATCAACCCTCAGGACCCCATTCCCAG...CCAGAAATGGACTGATACCAGGTTTATTAGAGCAAACCTCCCCACATTTTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp AAGGAAAATGTGGGGAGGTTTGCTCTAATAAACCTGGTATCAGTCCATTTCTGGCTCAGGAGCTGGGGATaGTCTTCAGGGAGGTCGTGT +
Preference number: 4 (lower is better)
Translates to: KENVGRFALINLVSVHFWLRSWG*SSGRSC
Trigger: ACACGACCTCCCTGAAGATCATCCCCAGCTCCTGAG...CCAGAAATGGACTGATACCAGGTTTATTAGAGCAAACCTCCCCACATTTTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp AAGGAAAATGTGGGGAGGTTTGCTCTAATAAACCTGGTATCAGTCCATTTCTGGCATTGTACCGAAGCATaGGCGCAAAGGAGCGGGCGA +
Preference number: 4 (lower is better)
Translates to: KENVGRFALINLVSVHFWHCTEA*AQRSGR
Trigger: TCGCCCGCTCCTTTGCGCTCATGCTTCGGTACAATG...CCAGAAATGGACTGATACCAGGTTTATTAGAGCAAACCTCCCCACATTTTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp AAGGAAAATGTGGGGAGGTTTGCTCTAATAAACCTGGTATCAGTCCATTTCTGGCTCCAGGAGGGTGGCTaGTCTCTCCTGGCCAAAGAT +
Preference number: 4 (lower is better)
Translates to: KENVGRFALINLVSVHFWLQEGG*SLLAKD
Trigger: ATCTTTGGCCAGGAGAGAGCAGCCACCCTCCTGGAG...CCAGAAATGGACTGATACCAGGTTTATTAGAGCAAACCTCCCCACATTTTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp CAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGTTGGAGTTTTCTGCCTaGAGCCACTGTTCAAAGTCC +
Preference number: 4 (lower is better)
Translates to: QVCSGNRGSIWSKAALGVLEFSA*SHCSKS
Trigger: GGACTTTGAACAGTGGCTGCAGGCAGAAAACTCCAA...CACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp TATCTAGCCCACGGCCCAAGTCTGTGTGACTTTAAAACTAGCCAAATACTCAAGGCAGCTTCACCTCTCTaGTCCTCAAGTCCTTGGCTG +
Preference number: 4 (lower is better)
Translates to: YLAHGPSLCDFKTSQILKAASPL*SSSPWL
Trigger: CAGCCAAGGACTTGAGGACCAGAGAGGTGAAGCTGC...CTTGAGTATTTGGCTAGTTTTAAAGTCACACAGACTTGGGCCGTGGGCTAGATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp ATCACGGCTTCTCTTTATCTAGCCCACGGCCCAAGTCTGTGTGACTTTAAAACTCATGGTTGCCCCTTCTaGGGAAGACTTCTTCATCAC +
Preference number: 4 (lower is better)
Translates to: ITASLYLAHGPSLCDFKTHGCPF*GRLLHH
Trigger: GTGATGAAGAAGTCTTCCCCAGAAGGGGCAACCATG...AGTTTTAAAGTCACACAGACTTGGGCCGTGGGCTAGATAAAGAGAAGCCGTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp GTAGAAAAAGGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGAAGGGAGAGGTGTTTTaGATGACACCCACAGCCTGT +
Preference number: 4 (lower is better)
Translates to: VEKGKFVLETEAAFGLRLKGEVF*MTPTAC
Trigger: ACAGGCTGTGGGTGTCATTCAAAACACCTCTCCCTT...CAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCCTTTTTCTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp ATCACGGCTTCTCTTTATCTAGCCCACGGCCCAAGTCTGTGTGACTTTAAAACTTCTACTTTCTGCTGGTaGTTAGAGTTCCCATGGGCA +
Preference number: 4 (lower is better)
Translates to: ITASLYLAHGPSLCDFKTSTFCW*LEFPWA
Trigger: TGCCCATGGGAACTCTAAGCACCAGCAGAAAGTAGA...AGTTTTAAAGTCACACAGACTTGGGCCGTGGGCTAGATAAAGAGAAGCCGTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp ATTCTGTGTGGCTATGGTAACCACTCAGAGGCTTCTTCAGCAACATCTGGATTTTCTGTCCTCTGCAGCTaGTGGTTTCTCATGAGACTC +
Preference number: 4 (lower is better)
Translates to: ILCGYGNHSEASSATSGFSVLCS*WFLMRL
Trigger: GAGTCTCATGAGAAACCAGCAGCTGCAGAGGACAGA...AAATCCAGATGTTGCTGAAGAAGCCTCTGAGTGGTTACCATAGCCACACAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GTAGAAAAAGGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGGGTATTCCTGAATGGTaGCTACCACGCTGTCAGAGA +
Preference number: 4 (lower is better)
Translates to: VEKGKFVLETEAAFGLRLGIPEW*LPRCQR
Trigger: TCTCTGACAGCGTGGTAGCCACCATTCAGGAATACC...CAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCCTTTTTCTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp CGATCCAGTTTTAAAGCACTTAGGAATCATCCCAGAATTCCCTGGTTATGTGTCTGGTCCTCAAGTCCTTaGCTGTGGCCACTCTCATTG +
Preference number: 4 (lower is better)
Translates to: RSSFKALRNHPRIPWLCVWSSSP*LWPLSL
Trigger: CAATGAGAGTGGCCACAGCCAAGGACTTGAGGACCA...GACACATAACCAGGGAATTCTGGGATGATTCCTAAGTGCTTTAAAACTGGATCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp CAAAGAGACATTGTATCTGAAGTTATCTACACTGAGCATGTACAGACATGGCATCTCTCGGTCAGCAGGTaGCCAGAGTCCTTGAGCTTG +
Preference number: 4 (lower is better)
Translates to: QRDIVSEVIYTEHVQTWHLSVSR*PESLSL
Trigger: CAAGCTCAAGGACTCTGGCCACCTGCTGACCGAGAG...ATGCCATGTCTGTACATGCTCAGTGTAGATAACTTCAGATACAATGTCTCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp CAAAGAGACATTGTATCTGAAGTTATCTACACTGAGCATGTACAGACATGGCATTGGCTCAGCTGCCATTaGTTCTCCTTCAAGCCCAGC +
Preference number: 4 (lower is better)
Translates to: QRDIVSEVIYTEHVQTWHWLSCH*FSFKPS
Trigger: GCTGGGCTTGAAGGAGAAGCAATGGCAGCTGAGCCA...ATGCCATGTCTGTACATGCTCAGTGTAGATAACTTCAGATACAATGTCTCTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp ATTCTGTGTGGCTATGGTAACCACTCAGAGGCTTCTTCAGCAACATCTGGATTTTGGTCTACTTTCTGCTaGTGCTTAGAGTTCCCATGG +
Preference number: 4 (lower is better)
Translates to: ILCGYGNHSEASSATSGFWSTFC*CLEFPW
Trigger: CCATGGGAACTCTAAGCACCAGCAGAAAGTAGACCA...AAATCCAGATGTTGCTGAAGAAGCCTCTGAGTGGTTACCATAGCCACACAGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp ACACACTCCAAAGGAGTGTGTAATCCCATCTGGAAAAAGGGAGTGTTAAGTATTGAGAAAGCCGGCCTTTaGGATGTTGTTGGTGAACAC +
Preference number: 4 (lower is better)
Translates to: THSKGVCNPIWKKGVLSIEKAGL*DVVGEH
Trigger: GTGTTCACCAACAACATCCCAAAGGCCGGCTTTCTC...AATACTTAACACTCCCTTTTTCCAGATGGGATTACACACTCCTTTGGAGTGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp CTAACCACACACAGTACACATTTTAGTATAAATAGACAGAAGCAGCATCGTAGAAGGTTCTCAAAGAGGTaGTGGCCTTCTGGGATTCGG +
Preference number: 4 (lower is better)
Translates to: LTTHSTHFSINRQKQHRRRFSKR*WPSGIR
Trigger: CCGAATCCCAGAAGGCCAGCACCTCTTTGAGAACCT...TCTACGATGCTGCTTCTGTCTATTTATACTAAAATGTGTACTGTGTGTGGTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CCA 90 bp GACATTGTATCTGAAGTTATCTACACTGAGCATGTACAGACATGGCATATAAAAGCAGCTTCACCTCTCTaGTCCTCAAGTCCTTGGCTG +
Preference number: 4 (lower is better)
Translates to: DIVSEVIYTEHVQTWHIKAASPL*SSSPWL
Trigger: CAGCCAAGGACTTGAGGACCAGAGAGGTGAAGCTGC...TTTTATATGCCATGTCTGTACATGCTCAGTGTAGATAACTTCAGATACAATGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
3UTR CAA 72 bp CCCACTGTTTTGGGCTTCCATAGGCACAAAGAGACATaGTATCTGAAGTTATCTACACTGAGCATGTACAGA +
Preference number: 4 (lower is better)
Translates to: PTVLGFHRHKET*YLKLSTLSMYR
Trigger: TCTGTACATGCTCAGTGTAGATAACTTCAGATACAATGTCTCTTTGTGCCTATGGAAGCCCAAAACAGTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp CAAAGAGACATTGTATCTGAAGTTATCTACACTGAGCATGTACAGACATGGCATATACTTTGGTATTCCTaGATGGTGGCTACCACGCTG +
Preference number: 4 (lower is better)
Translates to: QRDIVSEVIYTEHVQTWHILWYS*MVATTL
Trigger: CAGCGTGGTAGCCACCATTCAGGAATACCAAAGTAT...ATGCCATGTCTGTACATGCTCAGTGTAGATAACTTCAGATACAATGTCTCTTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp CGATCCAGTTTTAAAGCACTTAGGAATCATCCCAGAATTCCCTGGTTATGTGTCACAAGTTTCTTCAGTTaGGTTTGTAACCGGTCTACA +
Preference number: 4 (lower is better)
Translates to: RSSFKALRNHPRIPWLCVTSFFS*VCNRST
Trigger: TGTAGACCGGTTACAAACTCAACTGAAGAAACTTGT...GACACATAACCAGGGAATTCTGGGATGATTCCTAAGTGCTTTAAAACTGGATCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR TCA 90 bp CTAACCACACACAGTACACATTTTAGTATAAATAGACAGAAGCAGCATCGTAGAAGTTTGCTCTTCCGCTaGAGAAGGCTGTTATGCAGT +
Preference number: 4 (lower is better)
Translates to: LTTHSTHFSINRQKQHRRSLLFR*RRLLCS
Trigger: ACTGCATAACAGCCTTCTTCAGCGGAAGAGCAAACT...TCTACGATGCTGCTTCTGTCTATTTATACTAAAATGTGTACTGTGTGTGGTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR GCA 90 bp GACATTGTATCTGAAGTTATCTACACTGAGCATGTACAGACATGGCATATAAAAATCTGGTCTACTTTCTaGTGGTGCTTAGAGTTCCCA +
Preference number: 4 (lower is better)
Translates to: DIVSEVIYTEHVQTWHIKIWSTF*WCLEFP
Trigger: TGGGAACTCTAAGCACCAGCAGAAAGTAGACCAGAT...TTTTATATGCCATGTCTGTACATGCTCAGTGTAGATAACTTCAGATACAATGTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp TACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGCGCGAGCGGGCGAAGTTGTaGGCCAGGGCGCAGCTGCGC +
Preference number: 5 (lower is better)
Translates to: YWAPSSQPLRDCRRSPVRERAKL*ARAQLR
Trigger: GCGCAGCTGCGCCCTGGCCAACAACTTCGCCCGCTC...GCGCACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 90 bp CACAGCTGGAACTCATTCACGTCCTCCCGGTACTGCTCATGGTCCTaGGCCACCTGGGCCAGGAGGTCCACCCTGCGCTGGGCTCTGGCC +
Preference number: 5 (lower is better)
Translates to: HSWNSFTSSRYCSWS*ATWARRSTLRWALA
Trigger: GGCCAGAGCCCAGCGCAGGGTGGACCTCCTGGCCCAGGTGGCCCAGGACCATGAGCAGTACCGGGAGGACGTGAATGAGTTCCAGCTGTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 90 bp ATGGAGGCCAGGTCAGGCAGGCTGGCCGTGATGTCCAGGAGCCTCTaGGCCAGGGCCTTCCACAGCTGCAGGTCATTTAGGGGCCGCTGG +
Preference number: 5 (lower is better)
Translates to: MEARSGRLAVMSRSL*ARAFHSCRSFRGRW
Trigger: CCAGCGGCCCCTAAATGACCTGCAGCTGTGGAAGGCCCTGGCCCAGAGGCTCCTGGACATCACGGCCAGCCTGCCTGACCTGGCCTCCAT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp GGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGAAGGAGCGGGCGAAGTaGTTGGCCAGGGCGCAGCTG +
Preference number: 5 (lower is better)
Translates to: GYWAPSSQPLRDCRRSPVKERAK*LARAQL
Trigger: CAGCTGCGCCCTGGCCAACAACTTCGCCCGCTCCTT...CACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS GCA 90 bp ACCGCCTTCAGCCACAGCTGGAACTCATTCACGTCCTCCCGGTACTaGTCATGGTCCTGGGCCACCTGGGCCAGGAGGTCCACCCTGCGC +
Preference number: 5 (lower is better)
Translates to: TAFSHSWNSFTSSRY*SWSWATWARRSTLR
Trigger: GCGCAGGGTGGACCTCCTGGCCCAGGTGGCCCAGGACCATGAGCAGTACCGGGAGGACGTGAATGAGTTCCAGCTGTGGCTGAAGGCGGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 90 bp CTCTGGGCCAGGGCCTTCCACAGCTGCAGGTCATTTAGGGGCCGCTaGAAACGCTGCCACAGCTCTGCCCGGGTCGCATTGTGGAGCCTG +
Preference number: 5 (lower is better)
Translates to: LWARAFHSCRSFRGR*KRCHSSARVALWSL
Trigger: CAGGCTCCACAATGCGACCCGGGCAGAGCTGTGGCAGCGTTTCCAGCGGCCCCTAAATGACCTGCAGCTGTGGAAGGCCCTGGCCCAGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS TCA 90 bp AACAGGGAGCCCGCCTCCTCCAACAGCCTGTCCAGGAGCACAGCCTaGTTGTCCACGTTGTGCAGCAGCACCTGGGCGTGGCTCAGCTGC +
Preference number: 5 (lower is better)
Translates to: NREPASSNSLSRSTA*LSTLCSSTWAWLSC
Trigger: GCAGCTGAGCCACGCCCAGGTGCTGCTGCACAACGTGGACAATCAGGCTGTGCTCCTGGACAGGCTGTTGGAGGAGGCGGGCTCCCTGTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 90 bp TTCAGCCACAGCTGGAACTCATTCACGTCCTCCCGGTACTGCTCATaGTCCTGGGCCACCTGGGCCAGGAGGTCCACCCTGCGCTGGGCT +
Preference number: 5 (lower is better)
Translates to: FSHSWNSFTSSRYCS*SWATWARRSTLRWA
Trigger: AGCCCAGCGCAGGGTGGACCTCCTGGCCCAGGTGGCCCAGGACCATGAGCAGTACCGGGAGGACGTGAATGAGTTCCAGCTGTGGCTGAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 90 bp TCCTCTGAAGCCAGTGCAGCCCGAGTCCCCGAGAACAGCCTCCACTaGGCCACCAGCTCATCCTCTGTGGCTGTCTTCACCGTGGGCTCC +
Preference number: 5 (lower is better)
Translates to: SSEASAARVPENSLH*ATSSSSVAVFTVGS
Trigger: GGAGCCCACGGTGAAGACAGCCACAGAGGATGAGCTGGTGGCCCAGTGGAGGCTGTTCTCGGGGACTCGGGCTGCACTGGCTTCAGAGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp GGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGGGACCTCTGCAGGGCTaGCTGGTCACAGGAGATCTG +
Preference number: 5 (lower is better)
Translates to: GYWAPSSQPLRDCRRSPVGPLQG*LVTGDL
Trigger: CAGATCTCCTGTGACCAGCAAGCCCTGCAGAGGTCC...CACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp GGGTGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAGGACCTCTGCAGGGCTaGCTGGTCACAGGAGATCTG +
Preference number: 5 (lower is better)
Translates to: GCEIGYWAPSSQPLRDCRGPLQG*LVTGDL
Trigger: CAGATCTCCTGTGACCAGCAAGCCCTGCAGAGGTCC...TCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp GGGTGTGAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGACCTCCTGGACCATGGTaGCCCCTTCTGGGGAAGACT +
Preference number: 5 (lower is better)
Translates to: GCEIGYWAPSSQPLRDCRPPGPW*PLLGKT
Trigger: AGTCTTCCCCAGAAGGGGCAACCATGGTCCAGGAGG...TCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTCACACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp TACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTGTGCGCGTCCTTCCAGTGGGTTaGCCCCATGCTGTCTCCTGG +
Preference number: 5 (lower is better)
Translates to: YWAPSSQPLRDCRRSPVRVLPVG*PHAVSW
Trigger: CCAGGAGACAGCATGGGGCAAACCCACTGGAAGGAC...GCGCACAGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp AGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTACTGGGCCCCTGTCTCTCGAAGCCTaGCCTCCAGGGCCGCTCGGG +
Preference number: 5 (lower is better)
Translates to: RGSIWSKAALGVRSATGPLSLEA*PPGPLG
Trigger: CCCGAGCGGCCCTGGAGGCAAGGCTTCGAGAGACAG...GGGCCCAGTAGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp ATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTCCTCCTGGACCATGGTaGCCCCTTCTGGGGAAGACT +
Preference number: 5 (lower is better)
Translates to: IGYWAPSSQPLRDCRRSPPPGPW*PLLGKT
Trigger: AGTCTTCCCCAGAAGGGGCAACCATGGTCCAGGAGG...AGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS TCA 90 bp TCCTCTTCTGGGCATCTTCATCCACGCTGGGGTCTCCGATCCTGCTaGACAGGGAGCCCGCCTCCTCCAACAGCCTGTCCAGGAGCACAG +
Preference number: 5 (lower is better)
Translates to: SSSGHLHPRWGLRSC*TGSPPPPTACPGAQ
Trigger: CTGTGCTCCTGGACAGGCTGTTGGAGGAGGCGGGCTCCCTGTTCAGCAGGATCGGAGACCCCAGCGTGGATGAAGATGCCCAGAAGAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS TCA 90 bp CGAGAGCTTTCCGTGAGGGCCGCCTCAATCTGGGGTAGAAAGGTGTaGATGGAGGCCAGGTCAGGCAGGCTGGCCGTGATGTCCAGGAGC +
Preference number: 5 (lower is better)
Translates to: RELSVRAASIWGRKV*MEARSGRLAVMSRS
Trigger: GCTCCTGGACATCACGGCCAGCCTGCCTGACCTGGCCTCCATTCACACCTTTCTACCCCAGATTGAGGCGGCCCTCACGGAAAGCTCTCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS TCA 90 bp CTTGCCTCCAGGGCCGCTCGGGGCCCCTTCGTGTTGTCATTGACCTaGAGCTGCTCCTGTATCACCTTCATCCAGGCCTGGGCATCCTCC +
Preference number: 5 (lower is better)
Translates to: LASRAARGPFVLSLT*SCSCITFIQAWASS
Trigger: GGAGGATGCCCAGGCCTGGATGAAGGTGATACAGGAGCAGCTTCAGGTCAATGACAACACGAAGGGGCCCCGAGCGGCCCTGGAGGCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095439.11
CDS CCA 90 bp CCCAGACAGCTGTGCACCTTCTCCACCACCGCCTTCAGCCACAGCTaGAACTCATTCACGTCCTCCCGGTACTGCTCATGGTCCTGGGCC +
Preference number: 5 (lower is better)
Translates to: PRQLCTFSTTAFSHS*NSFTSSRYCSWSWA
Trigger: GGCCCAGGACCATGAGCAGTACCGGGAGGACGTGAATGAGTTCCAGCTGTGGCTGAAGGCGGTGGTGGAGAAGGTGCACAGCTGTCTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS GCA 90 bp AGGGCCTTCCACAGCTGCAGGTCATTTAGGGGCCGCTGGAAACGCTaGCACAGCTCTGCCCGGGTCGCATTGTGGAGCCTGGTATTCTTC +
Preference number: 5 (lower is better)
Translates to: RAFHSCRSFRGRWKR*HSSARVALWSLVFF
Trigger: GAAGAATACCAGGCTCCACAATGCGACCCGGGCAGAGCTGTGGCAGCGTTTCCAGCGGCCCCTAAATGACCTGCAGCTGTGGAAGGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS GCA 90 bp CATCCACCGGTAGCGCAGATCTTCCAGCTCGTTGGAGGGGTCCCTTaGCGGCCTGAGACGAAGCAGGTTCTCAAAGAGGTGCTGGCCTTC +
Preference number: 5 (lower is better)
Translates to: HPPVAQIFQLVGGVP*RPETKQVLKEVLAF
Trigger: GAAGGCCAGCACCTCTTTGAGAACCTGCTTCGTCTCAGGCCGGCAAGGGACCCCTCCAACGAGCTGGAAGATCTGCGCTACCGGTGGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 90 bp TGTAGGAGAGAGCAGGGACTCCACCGCTTCTGCCTCCGACTCTTCTaGAATGCAGTCAGCTCCCCCGGAGAACTCTCGGTCAGCAGGTGG +
Preference number: 5 (lower is better)
Translates to: CRREQGLHRFCLRLF*NAVSSPGELSVSRW
Trigger: CCACCTGCTGACCGAGAGTTCTCCGGGGGAGCTGACTGCATTCCAGAAGAGTCGGAGGCAGAAGCGGTGGAGTCCCTGCTCTCTCCTACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp ATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTAGGTGGCCAGAGTCCTaGAGCTTGGACTTGTACAGC +
Preference number: 5 (lower is better)
Translates to: IGYWAPSSQPLRDCRRSPRWPES*SLDLYS
Trigger: GCTGTACAAGTCCAAGCTCAAGGACTCTGGCCACCT...AGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS TCA 90 bp GGTAGCGCAGATCTTCCAGCTCGTTGGAGGGGTCCCTTGCCGGCCTaGGACGAAGCAGGTTCTCAAAGAGGTGCTGGCCTTCTGGGATTC +
Preference number: 5 (lower is better)
Translates to: GSADLPARWRGPLPA*DEAGSQRGAGLLGF
Trigger: GAATCCCAGAAGGCCAGCACCTCTTTGAGAACCTGCTTCGTCTCAGGCCGGCAAGGGACCCCTCCAACGAGCTGGAAGATCTGCGCTACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp TGTCCAGCCTTGGGCATAACCTGGAATCACCCAGATGCCTCCCACCTGTGCCTGCTCGAGTCCAGCCTCTaGGGACTCAGCATCCCACAG +
Preference number: 5 (lower is better)
Translates to: CPALGITWNHPDASHLCLLESSL*GLSIPQ
Trigger: CTGTGGGATGCTGAGTCCCAAGAGGCTGGACTCGAG...CAGGCACAGGTGGGAGGCATCTGGGTGATTCCAGGTTATGCCCAAGGCTGGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp AAAGTCAGGGTCACGAGCCCCAAGACACTGCTTTCCTGTTTGCTGATGTCCAACGAGCGGGCGAAGTTGTaGGCCAGGGCGCAGCTGCGC +
Preference number: 5 (lower is better)
Translates to: KVRVTSPKTLLSCLLMSNERAKL*ARAQLR
Trigger: GCGCAGCTGCGCCCTGGCCAACAACTTCGCCCGCTC...GTTGGACATCAGCAAACAGGAAAGCAGTGTCTTGGGGCTCGTGACCCTGACTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp CCCCAATCCCTCTTCAATTCAGGTCATGGAACTCAGGACTCACACCTGTTAGGCGAGCGGGCGAAGTTGTaGGCCAGGGCGCAGCTGCGC +
Preference number: 5 (lower is better)
Translates to: PQSLFNSGHGTQDSHLLGERAKL*ARAQLR
Trigger: GCGCAGCTGCGCCCTGGCCAACAACTTCGCCCGCTC...GCCTAACAGGTGTGAGTCCTGAGTTCCATGACCTGAATTGAAGAGGGATTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS TCA 90 bp TCTTCCCCGTGTCCACCTCTGTCCTCTGCAGCTGCTGGTTTCTCATaGGACTCAGCATGTTCTCCTCTAGCAGCCGCAGGGCCTGCCAAG +
Preference number: 5 (lower is better)
Translates to: SSPCPPLSSAAAGFS*DSACSPLAAAGPAK
Trigger: CTTGGCAGGCCCTGCGGCTGCTAGAGGAGAACATGCTGAGTCTCATGAGAAACCAGCAGCTGCAGAGGACAGAGGTGGACACGGGGAAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS TCA 90 bp TCAGCTCCCCCGGAGAACTCTCGGTCAGCAGGTGGCCAGAGTCCTTaGGCTTGGACTTGTACAGCATCCACCGGTAGCGCAGATCTTCCA +
Preference number: 5 (lower is better)
Translates to: SAPPENSRSAGGQSP*AWTCTASTGSADLP
Trigger: TGGAAGATCTGCGCTACCGGTGGATGCTGTACAAGTCCAAGCTCAAGGACTCTGGCCACCTGCTGACCGAGAGTTCTCCGGGGGAGCTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 90 bp AAGCTGGCCCAGTGCTTGGAGCAGGGACACCTGGACCTCTTTCTCTaGGATTTCAGACAGCAGCGTCTCGAGTCCAGCCTCTTGGGACTC +
Preference number: 5 (lower is better)
Translates to: KLAQCLEQGHLDLFL*DFRQQRLESSLLGL
Trigger: GAGTCCCAAGAGGCTGGACTCGAGACGCTGCTGTCTGAAATCCCAGAGAAAGAGGTCCAGGTGTCCCTGCTCCAAGCACTGGGCCAGCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp GGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGCTGTCTCTCGAAGCCTaGCCTCCAGGGCCGCTCGGG +
Preference number: 5 (lower is better)
Translates to: GKFVLETEAAFGLRLLWVLSLEA*PPGPLG
Trigger: CCCGAGCGGCCCTGGAGGCAAGGCTTCGAGAGACAG...CACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp AGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTACTGGGCCCGTGGCTCAGCTGCCATaGCTTCTCCTTCAAGCCCAG +
Preference number: 5 (lower is better)
Translates to: RGSIWSKAALGVRSATGPVAQLP*LLLQAQ
Trigger: CTGGGCTTGAAGGAGAAGCAATGGCAGCTGAGCCAC...GGGCCCAGTAGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp AGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTACTGGGCCCTCTGCCCGGGTCGCATaGTGGAGCCTGGTATTCTTC +
Preference number: 5 (lower is better)
Translates to: RGSIWSKAALGVRSATGPSARVA*WSLVFF
Trigger: GAAGAATACCAGGCTCCACAATGCGACCCGGGCAGA...GGGCCCAGTAGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp GCAATCCACAGTGTCATTGTCGTTAAAAACACAGCCAGGCTCCCACCCTGCCCCAGTTCTGTGGCCAGCTaGCAGTTCCGCCCCAGACAG +
Preference number: 5 (lower is better)
Translates to: AIHSVIVVKNTARLPPCPSSVAS*QFRPRQ
Trigger: CTGTCTGGGGCGGAACTGCAAGCTGGCCACAGAACT...GGGGCAGGGTGGGAGCCTGGCTGTGTTTTTAACGACAATGACACTGTGGATTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp GAGATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACTTCCCCTTCATACTTaGGTATTCCTGAATGGTGGC +
Preference number: 5 (lower is better)
Translates to: EIGYWAPSSQPLRDCRRSLPLHT*VFLNGG
Trigger: GCCACCATTCAGGAATACCAAAGTATGAAGGGGAAG...TGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGATCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp ATCGGCTACTGGGCCCCCAGCAGCCAGCCTCTGAGGGACTGCAGAAGGTCACCTCTTCCCCTTCATACTTaGGTATTCCTGAATGGTGGC +
Preference number: 5 (lower is better)
Translates to: IGYWAPSSQPLRDCRRSPLPLHT*VFLNGG
Trigger: GCCACCATTCAGGAATACCAAAGTATGAAGGGGAAG...AGGTGACCTTCTGCAGTCCCTCAGAGGCTGGCTGCTGGGGGCCCAGTAGCCGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp TGCCTGGAGCTGCCTTTGCCTGCTCCTGCCTGGGGTCAGACTGTGAGCCGTAGGCTTCCCCTTCATACTTaGGTATTCCTGAATGGTGGC +
Preference number: 5 (lower is better)
Translates to: CLELPLPAPAWGQTVSRRLPLHT*VFLNGG
Trigger: GCCACCATTCAGGAATACCAAAGTATGAAGGGGAAG...CCTACGGCTCACAGTCTGACCCCAGGCAGGAGCAGGCAAAGGCAGCTCCAGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp GGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGAAGGAGCGGGCGAAGTaGTTGGCCAGGGCGCAGCTG +
Preference number: 5 (lower is better)
Translates to: GKFVLETEAAFGLRLLWVKERAK*LARAQL
Trigger: CAGCTGCGCCCTGGCCAACAACTTCGCCCGCTCCTT...CACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS GCA 90 bp GTGAACACCTGCTTCTTCCCCGTGTCCACCTCTGTCCTCTGCAGCTaGTGGTTTCTCATGAGACTCAGCATGTTCTCCTCTAGCAGCCGC +
Preference number: 5 (lower is better)
Translates to: VNTCFFPVSTSVLCS*WFLMRLSMFSSSSR
Trigger: GCGGCTGCTAGAGGAGAACATGCTGAGTCTCATGAGAAACCAGCAGCTGCAGAGGACAGAGGTGGACACGGGGAAGAAGCAGGTGTTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 90 bp CTCTGCAGGGCTTGCTGGTCACAGGAGATCTGGTCTACTTTCTGCTaGTGCTTAGAGTTCCCATGGGCAAGAGGCCTCACAGCCTCGATC +
Preference number: 5 (lower is better)
Translates to: LCRACWSQEIWSTFC*CLEFPWARGLTASI
Trigger: GATCGAGGCTGTGAGGCCTCTTGCCCATGGGAACTCTAAGCACCAGCAGAAAGTAGACCAGATCTCCTGTGACCAGCAAGCCCTGCAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 90 bp AGATCCTCCAGGGACCTCTGCAGGGCTTGCTGGTCACAGGAGATCTaGTCTACTTTCTGCTGGTGCTTAGAGTTCCCATGGGCAAGAGGC +
Preference number: 5 (lower is better)
Translates to: RSSRDLCRACWSQEI*STFCWCLEFPWARG
Trigger: GCCTCTTGCCCATGGGAACTCTAAGCACCAGCAGAAAGTAGACCAGATCTCCTGTGACCAGCAAGCCCTGCAGAGGTCCCTGGAGGATCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 90 bp AACACCTGCTTCTTCCCCGTGTCCACCTCTGTCCTCTGCAGCTGCTaGTTTCTCATGAGACTCAGCATGTTCTCCTCTAGCAGCCGCAGG +
Preference number: 5 (lower is better)
Translates to: NTCFFPVSTSVLCSC*FLMRLSMFSSSSRR
Trigger: CCTGCGGCTGCTAGAGGAGAACATGCTGAGTCTCATGAGAAACCAGCAGCTGCAGAGGACAGAGGTGGACACGGGGAAGAAGCAGGTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 90 bp TCTCCTGGGAATGGGGTCCTGAGGGTTGATGAGAAAGCCGGCCTTTaGGATGTTGTTGGTGAACACCTGCTTCTTCCCCGTGTCCACCTC +
Preference number: 5 (lower is better)
Translates to: SPGNGVLRVDEKAGL*DVVGEHLLLPRVHL
Trigger: GAGGTGGACACGGGGAAGAAGCAGGTGTTCACCAACAACATCCCAAAGGCCGGCTTTCTCATCAACCCTCAGGACCCCATTCCCAGGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp TCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTCCTCCTGGACCATGGTaGCCCCTTCTGGGGAAGACT +
Preference number: 5 (lower is better)
Translates to: SGNRGSIWSKAALGVRSAPPGPW*PLLGKT
Trigger: AGTCTTCCCCAGAAGGGGCAACCATGGTCCAGGAGG...AGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp TCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTGTCCTTCCAGTGGGTTaGCCCCATGCTGTCTCCTGG +
Preference number: 5 (lower is better)
Translates to: SGNRGSIWSKAALGVRSAVLPVG*PHAVSW
Trigger: CCAGGAGACAGCATGGGGCAAACCCACTGGAAGGAC...AGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS GCA 90 bp CTTTTCAGAGACTCCTCACCCCTAGGGAAATCCTTGGCGATGTCCTaGAGCGTAGAGAGACGAAGTTCTGTGGCCAGCTTGCAGTTCCGC +
Preference number: 5 (lower is better)
Translates to: LFRDSSPLGKSLAMS*SVERRSSVASLQFR
Trigger: GCGGAACTGCAAGCTGGCCACAGAACTTCGTCTCTCTACGCTGCAGGACATCGCCAAGGATTTCCCTAGGGGTGAGGAGTCTCTGAAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS GCA 90 bp GGTTGCCCCTTCTGGGGAAGACTTCTTCATCACAAGCTGGCCCAGTaGTTGGAGCAGGGACACCTGGACCTCTTTCTCTGGGATTTCAGA +
Preference number: 5 (lower is better)
Translates to: GCPFWGRLLHHKLAQ*LEQGHLDLFLWDFR
Trigger: TCTGAAATCCCAGAGAAAGAGGTCCAGGTGTCCCTGCTCCAAGCACTGGGCCAGCTTGTGATGAAGAAGTCTTCCCCAGAAGGGGCAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp GGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGAGTTCTGTGGCCAGCTaGCAGTTCCGCCCCAGACAG +
Preference number: 5 (lower is better)
Translates to: GKFVLETEAAFGLRLLWVSSVAS*QFRPRQ
Trigger: CTGTCTGGGGCGGAACTGCAAGCTGGCCACAGAACT...CACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp TCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTTCTGCCCGGGTCGCATaGTGGAGCCTGGTATTCTTC +
Preference number: 5 (lower is better)
Translates to: SGNRGSIWSKAALGVRSASARVA*WSLVFF
Trigger: GAAGAATACCAGGCTCCACAATGCGACCCGGGCAGA...AGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp TCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTTGTCCCTCACAGAACTaGTCACCTGCTCCAGGAGGG +
Preference number: 5 (lower is better)
Translates to: SGNRGSIWSKAALGVRSACPSQN*SPAPGG
Trigger: CCCTCCTGGAGCAGGTGACAAGTTCTGTGAGGGACA...AGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp ATTTCCCAGCAAAGTGGCCAGGTGCAGAGAGGGCTTTGTGACTGGGGTTACAGATGTCCCTCACAGAACTaGTCACCTGCTCCAGGAGGG +
Preference number: 5 (lower is better)
Translates to: ISQQSGQVQRGLCDWGYRCPSQN*SPAPGG
Trigger: CCCTCCTGGAGCAGGTGACAAGTTCTGTGAGGGACA...TCTGTAACCCCAGTCACAAAGCCCTCTCTGCACCTGGCCACTTTGCTGGGAAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp TGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGCTCGAGTCCAGCCTCTaGGGACTCAGCATCCCACAG +
Preference number: 5 (lower is better)
Translates to: CSGNRGSIWSKAALGVRSLESSL*GLSIPQ
Trigger: CTGTGGGATGCTGAGTCCCAAGAGGCTGGACTCGAG...CGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp GGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGGTCCTTCCAGTGGGTTaGCCCCATGCTGTCTCCTGG +
Preference number: 5 (lower is better)
Translates to: GKFVLETEAAFGLRLLWVVLPVG*PHAVSW
Trigger: CCAGGAGACAGCATGGGGCAAACCCACTGGAAGGAC...CACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 90 bp GCTGGAAACGCTGCCACAGCTCTGCCCGGGTCGCATTGTGGAGCCTaGTATTCTTCCCCTTCATACTTTGGTATTCCTGAATGGTGGCTA +
Preference number: 5 (lower is better)
Translates to: AGNAATALPGSHCGA*YSSPSYFGIPEWWL
Trigger: TAGCCACCATTCAGGAATACCAAAGTATGAAGGGGAAGAATACCAGGCTCCACAATGCGACCCGGGCAGAGCTGTGGCAGCGTTTCCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp TATCTAGCCCACGGCCCAAGTCTGTGTGACTTTAAAACTAGCCAAATACTCAAGCTGTCTCTCGAAGCCTaGCCTCCAGGGCCGCTCGGG +
Preference number: 5 (lower is better)
Translates to: YLAHGPSLCDFKTSQILKLSLEA*PPGPLG
Trigger: CCCGAGCGGCCCTGGAGGCAAGGCTTCGAGAGACAG...CTTGAGTATTTGGCTAGTTTTAAAGTCACACAGACTTGGGCCGTGGGCTAGATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp TCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTCCGGCCTTTGGGATGTaGTTGGTGAACACCTGCTTC +
Preference number: 5 (lower is better)
Translates to: SGNRGSIWSKAALGVRSAPAFGM*LVNTCF
Trigger: GAAGCAGGTGTTCACCAACAACATCCCAAAGGCCGG...AGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp GGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTACTAGGTGGCCAGAGTCCTaGAGCTTGGACTTGTACAGC +
Preference number: 5 (lower is better)
Translates to: GNRGSIWSKAALGVRSATRWPES*SLDLYS
Trigger: GCTGTACAAGTCCAAGCTCAAGGACTCTGGCCACCT...AGTAGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS TCA 90 bp GCATTGTGGAGCCTGGTATTCTTCCCCTTCATACTTTGGTATTCCTaGATGGTGGCTACCACGCTGTCAGAGAGTGACTGCAGGTCCGGG +
Preference number: 5 (lower is better)
Translates to: ALWSLVFFPFILWYS*MVATTLSESDCRSG
Trigger: CCCGGACCTGCAGTCACTCTCTGACAGCGTGGTAGCCACCATTCAGGAATACCAAAGTATGAAGGGGAAGAATACCAGGCTCCACAATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 90 bp TGTGGAGCCTGGTATTCTTCCCCTTCATACTTTGGTATTCCTGAATaGTGGCTACCACGCTGTCAGAGAGTGACTGCAGGTCCGGGAAGG +
Preference number: 5 (lower is better)
Translates to: CGAWYSSPSYFGIPE*WLPRCQRVTAGPGR
Trigger: CCTTCCCGGACCTGCAGTCACTCTCTGACAGCGTGGTAGCCACCATTCAGGAATACCAAAGTATGAAGGGGAAGAATACCAGGCTCCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp CAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGTGTCCCTCACAGAACTaGTCACCTGCTCCAGGAGGG +
Preference number: 5 (lower is better)
Translates to: QVCSGNRGSIWSKAALGVCPSQN*SPAPGG
Trigger: CCCTCCTGGAGCAGGTGACAAGTTCTGTGAGGGACA...CACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp GCAATCCACAGTGTCATTGTCGTTAAAAACACAGCCAGGCTCCCACCCTGCCCCGCCTTTGGGATGTTGTaGGTGAACACCTGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: AIHSVIVVKNTARLPPCPAFGML*VNTCFF
Trigger: GAAGAAGCAGGTGTTCACCAACAACATCCCAAAGGC...GGGGCAGGGTGGGAGCCTGGCTGTGTTTTTAACGACAATGACACTGTGGATTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp CACAGTTCTGATGGAGTGGTGGACCAGTGGTCTTTCTTGGCCAGTGAGCATCAGCCAGAGTCCTTGAGCTaGGACTTGTACAGCATCCAC +
Preference number: 5 (lower is better)
Translates to: HSSDGVVDQWSFLASEHQPESLS*DLYSIH
Trigger: GTGGATGCTGTACAAGTCCAAGCTCAAGGACTCTGG...CTGATGCTCACTGGCCAAGAAAGACCACTGGTCCACCACTCCATCAGAACTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp CTCCCAGGACTGACACAGGCCACTTCACCCTTATGCATGAGAATAAAAAGTCAAGGACCTCTGCAGGGCTaGCTGGTCACAGGAGATCTG +
Preference number: 5 (lower is better)
Translates to: LPGLTQATSPLCMRIKSQGPLQG*LVTGDL
Trigger: CAGATCTCCTGTGACCAGCAAGCCCTGCAGAGGTCC...TTGACTTTTTATTCTCATGCATAAGGGTGAAGTGGCCTGTGTCAGTCCTGGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp GGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGTGAGATCGGCTACTGCCTTTGGGATGTTGTaGGTGAACACCTGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: GNRGSIWSKAALGVRSATAFGML*VNTCFF
Trigger: GAAGAAGCAGGTGTTCACCAACAACATCCCAAAGGC...AGTAGCCGATCTCACACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp AGCCCCAAGACACTGCTTTCCTGTTTGCTGATGTCCAACCTTTTCTGGGTACCACCGGCCTTTGGGATGTaGTTGGTGAACACCTGCTTC +
Preference number: 5 (lower is better)
Translates to: SPKTLLSCLLMSNLFWVPPAFGM*LVNTCF
Trigger: GAAGCAGGTGTTCACCAACAACATCCCAAAGGCCGG...TGGTACCCAGAAAAGGTTGGACATCAGCAAACAGGAAAGCAGTGTCTTGGGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp GGCAAGTTTGTTCTGGAAACAGAGGCAGCATTTGGTCTAAGGCTGCTCTGGGTGCCAGAGTCCTTGAGCTaGGACTTGTACAGCATCCAC +
Preference number: 5 (lower is better)
Translates to: GKFVLETEAAFGLRLLWVPESLS*DLYSIH
Trigger: GTGGATGCTGTACAAGTCCAAGCTCAAGGACTCTGG...CACCCAGAGCAGCCTTAGACCAAATGCTGCCTCTGTTTCCAGAACAAACTTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp TATCTAGCCCACGGCCCAAGTCTGTGTGACTTTAAAACTAGCCAAATACTCAAGAGTTCTGTGGCCAGCTaGCAGTTCCGCCCCAGACAG +
Preference number: 5 (lower is better)
Translates to: YLAHGPSLCDFKTSQILKSSVAS*QFRPRQ
Trigger: CTGTCTGGGGCGGAACTGCAAGCTGGCCACAGAACT...CTTGAGTATTTGGCTAGTTTTAAAGTCACACAGACTTGGGCCGTGGGCTAGATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp CTCCAATTCTGTGTGGCTATGGTAACCACTCAGAGGCTTCTTCAGCAACATCTGAGGTGGCCAGAGTCCTaGAGCTTGGACTTGTACAGC +
Preference number: 5 (lower is better)
Translates to: LQFCVAMVTTQRLLQQHLRWPES*SLDLYS
Trigger: GCTGTACAAGTCCAAGCTCAAGGACTCTGGCCACCT...CAGATGTTGCTGAAGAAGCCTCTGAGTGGTTACCATAGCCACACAGAATTGGAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp TATCTAGCCCACGGCCCAAGTCTGTGTGACTTTAAAACTAGCCAAATACTCAAGGTGGCTCAGCTGCCATaGCTTCTCCTTCAAGCCCAG +
Preference number: 5 (lower is better)
Translates to: YLAHGPSLCDFKTSQILKVAQLP*LLLQAQ
Trigger: CTGGGCTTGAAGGAGAAGCAATGGCAGCTGAGCCAC...CTTGAGTATTTGGCTAGTTTTAAAGTCACACAGACTTGGGCCGTGGGCTAGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp ATTCTGTGTGGCTATGGTAACCACTCAGAGGCTTCTTCAGCAACATCTGGATTTTCTGCCCGGGTCGCATaGTGGAGCCTGGTATTCTTC +
Preference number: 5 (lower is better)
Translates to: ILCGYGNHSEASSATSGFSARVA*WSLVFF
Trigger: GAAGAATACCAGGCTCCACAATGCGACCCGGGCAGA...AAATCCAGATGTTGCTGAAGAAGCCTCTGAGTGGTTACCATAGCCACACAGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp CGATCCAGTTTTAAAGCACTTAGGAATCATCCCAGAATTCCCTGGTTATGTGTCCTCGAGTCCAGCCTCTaGGGACTCAGCATCCCACAG +
Preference number: 5 (lower is better)
Translates to: RSSFKALRNHPRIPWLCVLESSL*GLSIPQ
Trigger: CTGTGGGATGCTGAGTCCCAAGAGGCTGGACTCGAG...GACACATAACCAGGGAATTCTGGGATGATTCCTAAGTGCTTTAAAACTGGATCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp TACAGACAAAGTCAGGGTCACGAGCCCCAAGACACTGCTTTCCTGTTTGCTGATGCCTTTGGGATGTTGTaGGTGAACACCTGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: YRQSQGHEPQDTAFLFADAFGML*VNTCFF
Trigger: GAAGAAGCAGGTGTTCACCAACAACATCCCAAAGGC...ATCAGCAAACAGGAAAGCAGTGTCTTGGGGCTCGTGACCCTGACTTTGTCTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp CTCCCAGGACTGACACAGGCCACTTCACCCTTATGCATGAGAATAAAAAGTCAACCGGCCTTTGGGATGTaGTTGGTGAACACCTGCTTC +
Preference number: 5 (lower is better)
Translates to: LPGLTQATSPLCMRIKSQPAFGM*LVNTCF
Trigger: GAAGCAGGTGTTCACCAACAACATCCCAAAGGCCGG...TTGACTTTTTATTCTCATGCATAAGGGTGAAGTGGCCTGTGTCAGTCCTGGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp CTCCAATTCTGTGTGGCTATGGTAACCACTCAGAGGCTTCTTCAGCAACATCTGCCAGAGTCCTTGAGCTaGGACTTGTACAGCATCCAC +
Preference number: 5 (lower is better)
Translates to: LQFCVAMVTTQRLLQQHLPESLS*DLYSIH
Trigger: GTGGATGCTGTACAAGTCCAAGCTCAAGGACTCTGG...CAGATGTTGCTGAAGAAGCCTCTGAGTGGTTACCATAGCCACACAGAATTGGAG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS-3UTR CAA 90 bp CAAAGAGACATTGTATCTGAAGTTATCTACACTGAGCATGTACAGACATGGCATAAGGAGCGGGCGAAGTaGTTGGCCAGGGCGCAGCTG +
Preference number: 5 (lower is better)
Translates to: QRDIVSEVIYTEHVQTWHKERAK*LARAQL
Trigger: CAGCTGCGCCCTGGCCAACAACTTCGCCCGCTCCTT...ATGCCATGTCTGTACATGCTCAGTGTAGATAACTTCAGATACAATGTCTCTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS TCA 90 bp CATACTTTGGTATTCCTGAATGGTGGCTACCACGCTGTCAGAGAGTaGCTGCAGGTCCGGGAAGGTGACAAGTTTCTTCAGTTGAGTTTG +
Preference number: 5 (lower is better)
Translates to: HTLVFLNGGYHAVRE*LQVREGDKFLQLSL
Trigger: CAAACTCAACTGAAGAAACTTGTCACCTTCCCGGACCTGCAGTCACTCTCTGACAGCGTGGTAGCCACCATTCAGGAATACCAAAGTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CAA 90 bp GGGCCATTGTACCGAAGCATGAGCGCAAAGGAGCGGGCGAAGTTGTaGGCCAGGGCGCAGCTGCGCTCCTCCTCGCCGGCCGGCAGCAGG +
Preference number: 6 (lower is better)
Translates to: GPLYRSMSAKERAKL*ARAQLRSSSPAGSR
Trigger: CCTGCTGCCGGCCGGCGAGGAGGAGCGCAGCTGCGCCCTGGCCAACAACTTCGCCCGCTCCTTTGCGCTCATGCTTCGGTACAATGGCCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CAA 72 bp TACCGAAGCATGAGCGCAAAGGAGCGGGCGAAGTTGTaGGCCAGGGCGCAGCTGCGCTCCTCCTCGCCGGCC +
Preference number: 6 (lower is better)
Translates to: YRSMSAKERAKL*ARAQLRSSSPA
Trigger: GGCCGGCGAGGAGGAGCGCAGCTGCGCCCTGGCCAACAACTTCGCCCGCTCCTTTGCGCTCATGCTTCGGTA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS GCA 72 bp GGCCAGGATCTCAGGTTTCTGGCCCTCCTGGCAAGTTaGCAAGAGGGCCTCCGCCGCCCGCAGGACCAGTTC +
Preference number: 6 (lower is better)
Translates to: GQDLRFLALLAS*QEGLRRPQDQF
Trigger: GAACTGGTCCTGCGGGCGGCGGAGGCCCTCTTGGCAACTTGCCAGGAGGGCCAGAAACCTGAGATCCTGGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095439.11
CDS CAA 72 bp GGGCCAGGATCTCAGGTTTCTGGCCCTCCTGGCAAGTaGCCAAGAGGGCCTCCGCCGCCCGCAGGACCAGTT +
Preference number: 6 (lower is better)
Translates to: GPGSQVSGPPGK*PRGPPPPAGPV
Trigger: AACTGGTCCTGCGGGCGGCGGAGGCCCTCTTGGCAACTTGCCAGGAGGGCCAGAAACCTGAGATCCTGGCCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095439.11
CDS TCA 72 bp CCCGCCTCCTCCAACAGCCTGTCCAGGAGCACAGCCTaGTTGTCCACGTTGTGCAGCAGCACCTGGGCGTGG +
Preference number: 6 (lower is better)
Translates to: PASSNSLSRSTA*LSTLCSSTWAW
Trigger: CCACGCCCAGGTGCTGCTGCACAACGTGGACAATCAGGCTGTGCTCCTGGACAGGCTGTTGGAGGAGGCGGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS GCA 72 bp CACACCCACTCGATGCGACTCTGTCTCTCGAAGCCTTaGCTCCAGGGCCGCTCGGGGCCCCTTCGTGTTGTC +
Preference number: 6 (lower is better)
Translates to: HTHSMRLCLSKP*LQGRSGPLRVV
Trigger: GACAACACGAAGGGGCCCCGAGCGGCCCTGGAGGCAAGGCTTCGAGAGACAGAGTCGCATCGAGTGGGTGTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS CCA 72 bp AACTCATTCACGTCCTCCCGGTACTGCTCATGGTCCTaGGCCACCTGGGCCAGGAGGTCCACCCTGCGCTGG +
Preference number: 6 (lower is better)
Translates to: NSFTSSRYCSWS*ATWARRSTLRW
Trigger: CCAGCGCAGGGTGGACCTCCTGGCCCAGGTGGCCCAGGACCATGAGCAGTACCGGGAGGACGTGAATGAGTT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 72 bp GCCAGTGCAGCCCGAGTCCCCGAGAACAGCCTCCACTaGGCCACCAGCTCATCCTCTGTGGCTGTCTTCACC +
Preference number: 6 (lower is better)
Translates to: ASAARVPENSLH*ATSSSSVAVFT
Trigger: GGTGAAGACAGCCACAGAGGATGAGCTGGTGGCCCAGTGGAGGCTGTTCTCGGGGACTCGGGCTGCACTGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CAA 72 bp CCACACCCACTCGATGCGACTCTGTCTCTCGAAGCCTaGCCTCCAGGGCCGCTCGGGGCCCCTTCGTGTTGT +
Preference number: 6 (lower is better)
Translates to: PHPLDATLSLEA*PPGPLGAPSCC
Trigger: ACAACACGAAGGGGCCCCGAGCGGCCCTGGAGGCAAGGCTTCGAGAGACAGAGTCGCATCGAGTGGGTGTGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067005.11
ENSMUST00000109927.2
CDS CAA 72 bp TTGTACCGAAGCATGAGCGCAAAGGAGCGGGCGAAGTaGTTGGCCAGGGCGCAGCTGCGCTCCTCCTCGCCG +
Preference number: 6 (lower is better)
Translates to: LYRSMSAKERAK*LARAQLRSSSP
Trigger: CGGCGAGGAGGAGCGCAGCTGCGCCCTGGCCAACAACTTCGCCCGCTCCTTTGCGCTCATGCTTCGGTACAA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS TCA 72 bp GGGCATCTTCATCCACGCTGGGGTCTCCGATCCTGCTaGACAGGGAGCCCGCCTCCTCCAACAGCCTGTCCA +
Preference number: 6 (lower is better)
Translates to: GHLHPRWGLRSC*TGSPPPPTACP
Trigger: TGGACAGGCTGTTGGAGGAGGCGGGCTCCCTGTTCAGCAGGATCGGAGACCCCAGCGTGGATGAAGATGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS GCA 72 bp AGCCACAGCTGGAACTCATTCACGTCCTCCCGGTACTaGTCATGGTCCTGGGCCACCTGGGCCAGGAGGTCC +
Preference number: 6 (lower is better)
Translates to: SHSWNSFTSSRY*SWSWATWARRS
Trigger: GGACCTCCTGGCCCAGGTGGCCCAGGACCATGAGCAGTACCGGGAGGACGTGAATGAGTTCCAGCTGTGGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS GCA 72 bp CACAGCTGCAGGTCATTTAGGGGCCGCTGGAAACGCTaGCACAGCTCTGCCCGGGTCGCATTGTGGAGCCTG +
Preference number: 6 (lower is better)
Translates to: HSCRSFRGRWKR*HSSARVALWSL
Trigger: CAGGCTCCACAATGCGACCCGGGCAGAGCTGTGGCAGCGTTTCCAGCGGCCCCTAAATGACCTGCAGCTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 72 bp AGGGCCTTCCACAGCTGCAGGTCATTTAGGGGCCGCTaGAAACGCTGCCACAGCTCTGCCCGGGTCGCATTG +
Preference number: 6 (lower is better)
Translates to: RAFHSCRSFRGR*KRCHSSARVAL
Trigger: CAATGCGACCCGGGCAGAGCTGTGGCAGCGTTTCCAGCGGCCCCTAAATGACCTGCAGCTGTGGAAGGCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 72 bp GCCGGCCTGAGACGAAGCAGGTTCTCAAAGAGGTGCTaGCCTTCTGGGATTCGGGCCTCCAGCTCCTGCAGC +
Preference number: 6 (lower is better)
Translates to: AGLRRSRFSKRC*PSGIRASSSCS
Trigger: GCTGCAGGAGCTGGAGGCCCGAATCCCAGAAGGCCAGCACCTCTTTGAGAACCTGCTTCGTCTCAGGCCGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS GCA 72 bp CTTGCCGGCCTGAGACGAAGCAGGTTCTCAAAGAGGTaGTGGCCTTCTGGGATTCGGGCCTCCAGCTCCTGC +
Preference number: 6 (lower is better)
Translates to: LAGLRRSRFSKR*WPSGIRASSSC
Trigger: GCAGGAGCTGGAGGCCCGAATCCCAGAAGGCCAGCACCTCTTTGAGAACCTGCTTCGTCTCAGGCCGGCAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 72 bp GAGCAGGGACTCCACCGCTTCTGCCTCCGACTCTTCTaGAATGCAGTCAGCTCCCCCGGAGAACTCTCGGTC +
Preference number: 6 (lower is better)
Translates to: EQGLHRFCLRLF*NAVSSPGELSV
Trigger: GACCGAGAGTTCTCCGGGGGAGCTGACTGCATTCCAGAAGAGTCGGAGGCAGAAGCGGTGGAGTCCCTGCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 72 bp TTGATATCCCTCAGCCGGGCCAGGATCTCAGGTTTCTaGCCCTCCTGGCAAGTTGCCAAGAGGGCCTCCGCC +
Preference number: 6 (lower is better)
Translates to: LISLSRARISGF*PSWQVAKRASA
Trigger: GGCGGAGGCCCTCTTGGCAACTTGCCAGGAGGGCCAGAAACCTGAGATCCTGGCCCGGCTGAGGGATATCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095439.11
CDS CAA 90 bp TTGGCGATGTCCTGCAGCGTAGAGAGACGAAGTTCTGTGGCCAGCTaGCAGTTCCGCCCCAGACAGCTGTGCACCTTCTCCACCACCGCC +
Preference number: 6 (lower is better)
Translates to: LAMSCSVERRSSVAS*QFRPRQLCTFSTTA
Trigger: GGCGGTGGTGGAGAAGGTGCACAGCTGTCTGGGGCGGAACTGCAAGCTGGCCACAGAACTTCGTCTCTCTACGCTGCAGGACATCGCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS TCA 72 bp CCGGAGAACTCTCGGTCAGCAGGTGGCCAGAGTCCTTaGGCTTGGACTTGTACAGCATCCACCGGTAGCGCA +
Preference number: 6 (lower is better)
Translates to: PENSRSAGGQSP*AWTCTASTGSA
Trigger: TGCGCTACCGGTGGATGCTGTACAAGTCCAAGCTCAAGGACTCTGGCCACCTGCTGACCGAGAGTTCTCCGG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 72 bp CTGTGCACCTTCTCCACCACCGCCTTCAGCCACAGCTaGAACTCATTCACGTCCTCCCGGTACTGCTCATGG +
Preference number: 6 (lower is better)
Translates to: LCTFSTTAFSHS*NSFTSSRYCSW
Trigger: CCATGAGCAGTACCGGGAGGACGTGAATGAGTTCCAGCTGTGGCTGAAGGCGGTGGTGGAGAAGGTGCACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 72 bp GGGATTTCAGACAGCAGCGTCTCGAGTCCAGCCTCTTaGGACTCAGCATCCCACAGACGCACATCCCCTTGG +
Preference number: 6 (lower is better)
Translates to: GISDSSVSSPAS*DSASHRRTSPW
Trigger: CCAAGGGGATGTGCGTCTGTGGGATGCTGAGTCCCAAGAGGCTGGACTCGAGACGCTGCTGTCTGAAATCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 72 bp GCAGTCAGCTCCCCCGGAGAACTCTCGGTCAGCAGGTaGCCAGAGTCCTTGAGCTTGGACTTGTACAGCATC +
Preference number: 6 (lower is better)
Translates to: AVSSPGELSVSR*PESLSLDLYSI
Trigger: GATGCTGTACAAGTCCAAGCTCAAGGACTCTGGCCACCTGCTGACCGAGAGTTCTCCGGGGGAGCTGACTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CAA 72 bp TCCTGCAGCGTAGAGAGACGAAGTTCTGTGGCCAGCTaGCAGTTCCGCCCCAGACAGCTGTGCACCTTCTCC +
Preference number: 6 (lower is better)
Translates to: SCSVERRSSVAS*QFRPRQLCTFS
Trigger: GGAGAAGGTGCACAGCTGTCTGGGGCGGAACTGCAAGCTGGCCACAGAACTTCGTCTCTCTACGCTGCAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS TCA 72 bp GCATCGCCAGCTGCTCTTTCAGGCGAGAGCTTTCCGTaGGGGCCGCCTCAATCTGGGGTAGAAAGGTGTGAA +
Preference number: 6 (lower is better)
Translates to: ASPAALSGESFP*GPPQSGVERCE
Trigger: TTCACACCTTTCTACCCCAGATTGAGGCGGCCCTCACGGAAAGCTCTCGCCTGAAAGAGCAGCTGGCGATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 72 bp TCCACGAGATCCTCCAGGGACCTCTGCAGGGCTTGCTaGTCACAGGAGATCTGGTCTACTTTCTGCTGGTGC +
Preference number: 6 (lower is better)
Translates to: STRSSRDLCRAC*SQEIWSTFCWC
Trigger: GCACCAGCAGAAAGTAGACCAGATCTCCTGTGACCAGCAAGCCCTGCAGAGGTCCCTGGAGGATCTCGTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 72 bp CAGTGCTTGGAGCAGGGACACCTGGACCTCTTTCTCTaGGATTTCAGACAGCAGCGTCTCGAGTCCAGCCTC +
Preference number: 6 (lower is better)
Translates to: QCLEQGHLDLFL*DFRQQRLESSL
Trigger: GAGGCTGGACTCGAGACGCTGCTGTCTGAAATCCCAGAGAAAGAGGTCCAGGTGTCCCTGCTCCAAGCACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CAA 72 bp CGCTGGAAACGCTGCCACAGCTCTGCCCGGGTCGCATaGTGGAGCCTGGTATTCTTCCCCTTCATACTTTGG +
Preference number: 6 (lower is better)
Translates to: RWKRCHSSARVA*WSLVFFPFILW
Trigger: CCAAAGTATGAAGGGGAAGAATACCAGGCTCCACAATGCGACCCGGGCAGAGCTGTGGCAGCGTTTCCAGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CAA 72 bp TGGGATTTCAGACAGCAGCGTCTCGAGTCCAGCCTCTaGGGACTCAGCATCCCACAGACGCACATCCCCTTG +
Preference number: 6 (lower is better)
Translates to: WDFRQQRLESSL*GLSIPQTHIPL
Trigger: CAAGGGGATGTGCGTCTGTGGGATGCTGAGTCCCAAGAGGCTGGACTCGAGACGCTGCTGTCTGAAATCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CAA 72 bp GATGATCTTCAGGGAGGTCGTGTCCTTCCAGTGGGTTaGCCCCATGCTGTCTCCTGGGAATGGGGTCCTGAG +
Preference number: 6 (lower is better)
Translates to: DDLQGGRVLPVG*PHAVSWEWGPE
Trigger: CTCAGGACCCCATTCCCAGGAGACAGCATGGGGCAAACCCACTGGAAGGACACGACCTCCCTGAAGATCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS TCA 72 bp TGTCCACCTCTGTCCTCTGCAGCTGCTGGTTTCTCATaGGACTCAGCATGTTCTCCTCTAGCAGCCGCAGGG +
Preference number: 6 (lower is better)
Translates to: CPPLSSAAAGFS*DSACSPLAAAG
Trigger: CCCTGCGGCTGCTAGAGGAGAACATGCTGAGTCTCATGAGAAACCAGCAGCTGCAGAGGACAGAGGTGGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 72 bp ATCACAAGCTGGCCCAGTGCTTGGAGCAGGGACACCTaGACCTCTTTCTCTGGGATTTCAGACAGCAGCGTC +
Preference number: 6 (lower is better)
Translates to: ITSWPSAWSRDT*TSFSGISDSSV
Trigger: GACGCTGCTGTCTGAAATCCCAGAGAAAGAGGTCCAGGTGTCCCTGCTCCAAGCACTGGGCCAGCTTGTGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS GCA 72 bp TGCTGGTCACAGGAGATCTGGTCTACTTTCTGCTGGTaGTTAGAGTTCCCATGGGCAAGAGGCCTCACAGCC +
Preference number: 6 (lower is better)
Translates to: CWSQEIWSTFCW*LEFPWARGLTA
Trigger: GGCTGTGAGGCCTCTTGCCCATGGGAACTCTAAGCACCAGCAGAAAGTAGACCAGATCTCCTGTGACCAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS GCA 72 bp AGGGCTTGCTGGTCACAGGAGATCTGGTCTACTTTCTaGTGGTGCTTAGAGTTCCCATGGGCAAGAGGCCTC +
Preference number: 6 (lower is better)
Translates to: RACWSQEIWSTF*WCLEFPWARGL
Trigger: GAGGCCTCTTGCCCATGGGAACTCTAAGCACCAGCAGAAAGTAGACCAGATCTCCTGTGACCAGCAAGCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 72 bp AGGGACCTCTGCAGGGCTTGCTGGTCACAGGAGATCTaGTCTACTTTCTGCTGGTGCTTAGAGTTCCCATGG +
Preference number: 6 (lower is better)
Translates to: RDLCRACWSQEI*STFCWCLEFPW
Trigger: CCATGGGAACTCTAAGCACCAGCAGAAAGTAGACCAGATCTCCTGTGACCAGCAAGCCCTGCAGAGGTCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 72 bp GGGGAAGACTTCTTCATCACAAGCTGGCCCAGTGCTTaGAGCAGGGACACCTGGACCTCTTTCTCTGGGATT +
Preference number: 6 (lower is better)
Translates to: GEDFFITSWPSA*SRDTWTSFSGI
Trigger: AATCCCAGAGAAAGAGGTCCAGGTGTCCCTGCTCCAAGCACTGGGCCAGCTTGTGATGAAGAAGTCTTCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CAA 72 bp TGGGGAAGACTTCTTCATCACAAGCTGGCCCAGTGCTaGGAGCAGGGACACCTGGACCTCTTTCTCTGGGAT +
Preference number: 6 (lower is better)
Translates to: WGRLLHHKLAQC*EQGHLDLFLWD
Trigger: ATCCCAGAGAAAGAGGTCCAGGTGTCCCTGCTCCAAGCACTGGGCCAGCTTGTGATGAAGAAGTCTTCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS GCA 72 bp TGCTTCTTCCCCGTGTCCACCTCTGTCCTCTGCAGCTaGTGGTTTCTCATGAGACTCAGCATGTTCTCCTCT +
Preference number: 6 (lower is better)
Translates to: CFFPVSTSVLCS*WFLMRLSMFSS
Trigger: AGAGGAGAACATGCTGAGTCTCATGAGAAACCAGCAGCTGCAGAGGACAGAGGTGGACACGGGGAAGAAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 72 bp TGGAAACGCTGCCACAGCTCTGCCCGGGTCGCATTGTaGAGCCTGGTATTCTTCCCCTTCATACTTTGGTAT +
Preference number: 6 (lower is better)
Translates to: WKRCHSSARVAL*SLVFFPFILWY
Trigger: ATACCAAAGTATGAAGGGGAAGAATACCAGGCTCCACAATGCGACCCGGGCAGAGCTGTGGCAGCGTTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 72 bp TCTTGGGACTCAGCATCCCACAGACGCACATCCCCTTaGTGTGACTCTAATGTCTGTGTGGCCATGGTGATC +
Preference number: 6 (lower is better)
Translates to: SWDSASHRRTSP*CDSNVCVAMVI
Trigger: GATCACCATGGCCACACAGACATTAGAGTCACACCAAGGGGATGTGCGTCTGTGGGATGCTGAGTCCCAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 72 bp TTCTTCCCCGTGTCCACCTCTGTCCTCTGCAGCTGCTaGTTTCTCATGAGACTCAGCATGTTCTCCTCTAGC +
Preference number: 6 (lower is better)
Translates to: FFPVSTSVLCSC*FLMRLSMFSSS
Trigger: GCTAGAGGAGAACATGCTGAGTCTCATGAGAAACCAGCAGCTGCAGAGGACAGAGGTGGACACGGGGAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 72 bp AATGGGGTCCTGAGGGTTGATGAGAAAGCCGGCCTTTaGGATGTTGTTGGTGAACACCTGCTTCTTCCCCGT +
Preference number: 6 (lower is better)
Translates to: NGVLRVDEKAGL*DVVGEHLLLPR
Trigger: ACGGGGAAGAAGCAGGTGTTCACCAACAACATCCCAAAGGCCGGCTTTCTCATCAACCCTCAGGACCCCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CAA 90 bp TGTTCCTCCAATCTTTTCAGAGACTCCTCACCCCTAGGGAAATCCTaGGCGATGTCCTGCAGCGTAGAGAGACGAAGTTCTGTGGCCAGC +
Preference number: 6 (lower is better)
Translates to: CSSNLFRDSSPLGKS*AMSCSVERRSSVAS
Trigger: GCTGGCCACAGAACTTCGTCTCTCTACGCTGCAGGACATCGCCAAGGATTTCCCTAGGGGTGAGGAGTCTCTGAAAAGATTGGAGGAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS TCA 72 bp GTATTCCTGAATGGTGGCTACCACGCTGTCAGAGAGTaGCTGCAGGTCCGGGAAGGTGACAAGTTTCTTCAG +
Preference number: 6 (lower is better)
Translates to: VFLNGGYHAVRE*LQVREGDKFLQ
Trigger: CTGAAGAAACTTGTCACCTTCCCGGACCTGCAGTCACTCTCTGACAGCGTGGTAGCCACCATTCAGGAATAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CCA 72 bp ACCAGTTCCACCTTCACCATTCCTTCAGACTCCAGCTaGCAGATTTTCTCTGTCTCTCGAAGCCTTGCCTCC +
Preference number: 6 (lower is better)
Translates to: TSSTFTIPSDSS*QIFSVSRSLAS
Trigger: GGAGGCAAGGCTTCGAGAGACAGAGAAAATCTGCCAGCTGGAGTCTGAAGGAATGGTGAAGGTGGAACTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095439.11
CDS TCA 72 bp GACTGCAGGTCCGGGAAGGTGACAAGTTTCTTCAGTTaGGTTTGTAACCGGTCTACACGGGGTTCCTCTGAA +
Preference number: 6 (lower is better)
Translates to: DCRSGKVTSFFS*VCNRSTRGSSE
Trigger: TTCAGAGGAACCCCGTGTAGACCGGTTACAAACTCAACTGAAGAAACTTGTCACCTTCCCGGACCTGCAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS TCA 72 bp AGCCTGGTATTCTTCCCCTTCATACTTTGGTATTCCTaGATGGTGGCTACCACGCTGTCAGAGAGTGACTGC +
Preference number: 6 (lower is better)
Translates to: SLVFFPFILWYS*MVATTLSESDC
Trigger: GCAGTCACTCTCTGACAGCGTGGTAGCCACCATTCAGGAATACCAAAGTATGAAGGGGAAGAATACCAGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS GCA 72 bp ATTGTGATGATTCTACGTAGCTTGGAGTTTTCTGCCTaGAGCCACTGTTCAAAGTCCCTCAGGAGCTGGGGA +
Preference number: 6 (lower is better)
Translates to: IVMILRSLEFSA*SHCSKSLRSWG
Trigger: TCCCCAGCTCCTGAGGGACTTTGAACAGTGGCTGCAGGCAGAAAACTCCAAGCTACGTAGAATCATCACAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CAA 72 bp AATCTTTTCAGAGACTCCTCACCCCTAGGGAAATCCTaGGCGATGTCCTGCAGCGTAGAGAGACGAAGTTCT +
Preference number: 6 (lower is better)
Translates to: NLFRDSSPLGKS*AMSCSVERRSS
Trigger: AGAACTTCGTCTCTCTACGCTGCAGGACATCGCCAAGGATTTCCCTAGGGGTGAGGAGTCTCTGAAAAGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CAA 72 bp CGCATTGTGGAGCCTGGTATTCTTCCCCTTCATACTTaGGTATTCCTGAATGGTGGCTACCACGCTGTCAGA +
Preference number: 6 (lower is better)
Translates to: RIVEPGILPLHT*VFLNGGYHAVR
Trigger: TCTGACAGCGTGGTAGCCACCATTCAGGAATACCAAAGTATGAAGGGGAAGAATACCAGGCTCCACAATGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2
CDS CAA 72 bp GCTGTGGCCACTCTCATTGTGATGATTCTACGTAGCTaGGAGTTTTCTGCCTGCAGCCACTGTTCAAAGTCC +
Preference number: 6 (lower is better)
Translates to: AVATLIVMILRS*EFSACSHCSKS
Trigger: GGACTTTGAACAGTGGCTGCAGGCAGAAAACTCCAAGCTACGTAGAATCATCACAATGAGAGTGGCCACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067005.11
ENSMUST00000095439.11
ENSMUST00000109927.2