Pregenerated sensors for SYNC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001333Ensembl transcript IDs: ENSMUST00000102599.4
Found 104 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AATACCTGTAGCACAAAGTTGTGGATCCATATAGCAGAAATTGGCTaGCCTTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGG | + |
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Preference number: 1 (lower is better) Translates to: NTCSTKLWIHIAEIG*PLTPTFSLRRSWFG Trigger: CCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAAGGGCAGCCAATTTCTGCTATATGGATCCACAACTTTGTGCTACAGGTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| 3UTR CCA 90 bp | TTTGTGAGCAGAGTCTTAAAATCTAATACCTGTAGCACAAAGTTGTaGATCCATATAGCAGAAATTGGCTGCCCTTTGACCCCAACATTT | + |
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Preference number: 1 (lower is better) Translates to: FVSRVLKSNTCSTKL*IHIAEIGCPLTPTF Trigger: AAATGTTGGGGTCAAAGGGCAGCCAATTTCTGCTATATGGATCCACAACTTTGTGCTACAGGTATTAGATTTTAAGACTCTGCTCACAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| 3UTR CAA 90 bp | TGTAGCACAAAGTTGTGGATCCATATAGCAGAAATTGGCTGCCCTTaGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCA | + |
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Preference number: 2 (lower is better) Translates to: CSTKLWIHIAEIGCP*TPTFSLRRSWFGSA Trigger: TGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAAGGGCAGCCAATTTCTGCTATATGGATCCACAACTTTGTGCTACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| 3UTR CAA 90 bp | AGAAATTGGCTGCCCTTTGACCCCAACATTTTCCCTCAGACGTTCTaGGTTTGGGTCAGCACAAAGCACTCCATAACATTCTTCACGATA | + |
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Preference number: 2 (lower is better) Translates to: RNWLPFDPNIFPQTF*VWVSTKHSITFFTI Trigger: TATCGTGAAGAATGTTATGGAGTGCTTTGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAAGGGCAGCCAATTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| 3UTR CAA 90 bp | GGCTTTGTGAGCAGAGTCTTAAAATCTAATACCTGTAGCACAAAGTaGTGGATCCATATAGCAGAAATTGGCTGCCCTTTGACCCCAACA | + |
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Preference number: 2 (lower is better) Translates to: GFVSRVLKSNTCSTK*WIHIAEIGCPLTPT Trigger: TGTTGGGGTCAAAGGGCAGCCAATTTCTGCTATATGGATCCACAACTTTGTGCTACAGGTATTAGATTTTAAGACTCTGCTCACAAAGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| 3UTR-3UTR CCA 90 bp | TTTGTGAGCAGAGTCTTAAAATCTAATACCTGTAGCACAAAGTTGTGGATCCATCAGACGTTCTTGGTTTaGGTCAGCACAAAGCACTCC | + |
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Preference number: 2 (lower is better) Translates to: FVSRVLKSNTCSTKLWIHQTFLV*VSTKHS Trigger: GGAGTGCTTTGTGCTGACCCAAACCAAGAACGTCTG...ATGGATCCACAACTTTGTGCTACAGGTATTAGATTTTAAGACTCTGCTCACAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| 3UTR-3UTR CAA 90 bp | TTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACAAAGCACTTAATAAATGTTTTCTaGTTTCTGGGCTACAGGTCC | + |
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Preference number: 3 (lower is better) Translates to: FDPNIFPQTFLVWVSTKHLINVF*FLGYRS Trigger: GGACCTGTAGCCCAGAAACAAGAAAACATTTATTAA...GTGCTTTGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| 3UTR TCA 72 bp | TTAGGCAAAACAGCCAGTGTTTGTACTTTTACAGGGTaGATTGCTTGCCAGTGCTGGTACTCTTATCTGTTG | + |
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Preference number: 3 (lower is better) Translates to: LGKTASVCTFTG*IACQCWYSYLL Trigger: CAACAGATAAGAGTACCAGCACTGGCAAGCAATTCACCCTGTAAAAGTACAAACACTGGCTGTTTTGCCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| 3UTR CCA 72 bp | AGAGTCTTAAAATCTAATACCTGTAGCACAAAGTTGTaGATCCATATAGCAGAAATTGGCTGCCCTTTGACC | + |
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Preference number: 3 (lower is better) Translates to: RVLKSNTCSTKL*IHIAEIGCPLT Trigger: GGTCAAAGGGCAGCCAATTTCTGCTATATGGATCCACAACTTTGTGCTACAGGTATTAGATTTTAAGACTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR TCA 90 bp | CCTTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACAAAGCAGGAGCCGGAGCAGCTaGGGCTCATACTCCTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: PLTPTFSLRRSWFGSAQSRSRSS*GSYSSS Trigger: GGAGGAGGAGTATGAGCCTCAGCTGCTCCGGCTCCT...GCTTTGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR TCA 90 bp | CTGCCCTTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACATCCAGGTTCCTGTTCTaGAGTTGGAGCTGCCGGGCC | + |
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Preference number: 4 (lower is better) Translates to: LPFDPNIFPQTFLVWVSTSRFLF*SWSCRA Trigger: GGCCCGGCAGCTCCAACTTCAGAACAGGAACCTGGA...TGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAAGGGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CCA 90 bp | CTGCCCTTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACAGCAGGCTTCCCTCCGTaGCCACCATTTCTCCCTCAC | + |
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Preference number: 4 (lower is better) Translates to: LPFDPNIFPQTFLVWVSTAGFPP*PPFLPH Trigger: GTGAGGGAGAAATGGTGGCCACGGAGGGAAGCCTGC...TGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAAGGGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR TCA 90 bp | CAGGGTATGGTGATGCATCCATCACTCAGGGTTCTGCTGGAAGATAAAAGGCTCGTGTTGGGAATCGGTTaGGCAGGCAGGCTTCCCTCC | + |
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Preference number: 4 (lower is better) Translates to: QGMVMHPSLRVLLEDKRLVLGIG*AGRLPS Trigger: GGAGGGAAGCCTGCCTGCTCAACCGATTCCCAACAC...GAGCCTTTTATCTTCCAGCAGAACCCTGAGTGATGGATGCATCACCATACCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR TCA 90 bp | CTGCCCTTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACATGCTCCTTCTGCTTCTaGCAGGCATCTCGGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: LPFDPNIFPQTFLVWVSTCSFCF*QASRSW Trigger: CCAGCTCCGAGATGCCTGTCAGAAGCAGAAGGAGCA...TGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAAGGGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR GCA 90 bp | CTGCCCTTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACATGGTCAGCGCTTCCCTaGAGTCGGCAAACTGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: LPFDPNIFPQTFLVWVSTWSALP*SRQTEP Trigger: TGGCTCAGTTTGCCGACTGCAGGGAAGCGCTGACCA...TGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAAGGGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR GCA 90 bp | CCTTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACAAAGCCTCTCCTGGAGAAAGTaGCCATCGCTCTGGGTCGGG | + |
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Preference number: 4 (lower is better) Translates to: PLTPTFSLRRSWFGSAQSLSWRK*PSLWVG Trigger: CCCGACCCAGAGCGATGGGCACTTTCTCCAGGAGAG...GCTTTGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR GCA 90 bp | CTGCCCTTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACATGCCTCGACTCCACCTaGCTGAGAAGTGGGTGCATC | + |
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Preference number: 4 (lower is better) Translates to: LPFDPNIFPQTFLVWVSTCLDST*LRSGCI Trigger: GATGCACCCACTTCTCAGGCAGGTGGAGTCGAGGCA...TGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAAGGGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CCA 90 bp | CCTTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACAAAGCGCCAGGATGTCCTGGTaGACTTGCTGCACCTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: PLTPTFSLRRSWFGSAQSARMSW*TCCTSC Trigger: GCAGGAGGTGCAGCAAGTCCACCAGGACATCCTGGC...GCTTTGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR GCA 90 bp | AAGGCTCTTTTTCCCTTCCATAGTACACTGAAATCAGTACCAGCAGCCTACAAAGAGCTGCCGGGCCTCTaGTTCCAGGGGTCGCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: KALFPFHSTLKSVPAAYKELPGL*FQGSQS Trigger: GCTCTGCGACCCCTGGAAGCAGAGGCCCGGCAGCTC...TTTGTAGGCTGCTGGTACTGATTTCAGTGTACTATGGAAGGGAAAAAGAGCCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CCA 90 bp | CCTTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACAAAGCAAGTGCCCATCGCTCTaGGTCGGGGGTGCTTCTAGT | + |
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Preference number: 4 (lower is better) Translates to: PLTPTFSLRRSWFGSAQSKCPSL*VGGASS Trigger: ACTAGAAGCACCCCCGACCCAGAGCGATGGGCACTT...GCTTTGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CCA 90 bp | TTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACAAAGCACAGCCGTCGGCTCTCCTaGAGAAAGTGCCCATCGCTC | + |
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Preference number: 4 (lower is better) Translates to: FDPNIFPQTFLVWVSTKHSRRLS*RKCPSL Trigger: GAGCGATGGGCACTTTCTCCAGGAGAGCCGACGGCT...GTGCTTTGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR TCA 90 bp | CCTTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACAAAGCGGCGGCTCTCGGCCATaGGATTTTCAAACTGTGTCG | + |
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Preference number: 4 (lower is better) Translates to: PLTPTFSLRRSWFGSAQSGGSRP*DFQTVS Trigger: CGACACAGTTTGAAAATCTCATGGCCGAGAGCCGCC...GCTTTGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR GCA 90 bp | CCATCACTCAGGGTTCTGCTGGAAGATAAAAGGCTCTTTTTCCCTTCCATAGTATCCTGGTGGACTTGCTaGACCTCCTGCAGGGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: PSLRVLLEDKRLFFPSIVSWWTC*TSCRAG Trigger: GCCAGCCCTGCAGGAGGTGCAGCAAGTCCACCAGGA...TACTATGGAAGGGAAAAAGAGCCTTTTATCTTCCAGCAGAACCCTGAGTGATGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CCA 90 bp | CCTTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACAAAGCCTCACGAGCGTGATCTaGTCCTCCAGGTTCCTGTTC | + |
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Preference number: 4 (lower is better) Translates to: PLTPTFSLRRSWFGSAQSLTSVI*SSRFLF Trigger: GAACAGGAACCTGGAGGACCAGATCACGCTCGTGAG...GCTTTGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR TCA 90 bp | TTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACAAAGCACGGGGATTCTGACTCCTaGAGAGGAAAACTCGCCTCG | + |
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Preference number: 4 (lower is better) Translates to: FDPNIFPQTFLVWVSTKHGDSDS*RGKLAS Trigger: CGAGGCGAGTTTTCCTCTTCAGGAGTCAGAATCCCC...GTGCTTTGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR GCA 90 bp | GCAAAACAGCCAGTGTTTGTACTTTTACAGGGTGAATTGCTTGCCAGTGCTGGTATGTCCTGGTGGACTTaGTGCACCTCCTGCAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: AKQPVFVLLQGELLASAGMSWWT*CTSCRA Trigger: AGCCCTGCAGGAGGTGCAGCAAGTCCACCAGGACAT...ACCAGCACTGGCAAGCAATTCACCCTGTAAAAGTACAAACACTGGCTGTTTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR GCA 90 bp | TTGTACTTTTACAGGGTGAATTGCTTGCCAGTGCTGGTACTCTTATCTGTTGGGCTCCAGCTCTGCCTGTaGGTGGAGCTTGTAGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: LYFYRVNCLPVLVLLSVGLQLCL*VELVGS Trigger: GCTGCCTACAAGCTCCACGCACAGGCAGAGCTGGAG...CCCAACAGATAAGAGTACCAGCACTGGCAAGCAATTCACCCTGTAAAAGTACAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CCA 90 bp | TTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACAAAGCACGCTTGTACACACTGCTaGAAACGAGCTTCCAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: FDPNIFPQTFLVWVSTKHACTHC*KRASSR Trigger: GCGGCTGGAAGCTCGTTTCCAGCAGTGTGTACAAGC...GTGCTTTGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CCA 90 bp | TTGTACTTTTACAGGGTGAATTGCTTGCCAGTGCTGGTACTCTTATCTGTTGGGGCAGCCAGGATGTCCTaGTGGACTTGCTGCACCTCC | + |
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Preference number: 4 (lower is better) Translates to: LYFYRVNCLPVLVLLSVGAARMS*WTCCTS Trigger: GGAGGTGCAGCAAGTCCACCAGGACATCCTGGCTGC...CCCAACAGATAAGAGTACCAGCACTGGCAAGCAATTCACCCTGTAAAAGTACAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CCA 90 bp | TTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACAAAGCACTCCTGGATCTCCGCCTaGGTGTCCTGTAGAGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: FDPNIFPQTFLVWVSTKHSWISA*VSCRAL Trigger: CAAAGCTCTACAGGACACCCAGGCGGAGATCCAGGA...GTGCTTTGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CCA 90 bp | TTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACAAAGCACCACCTGCCTGAGAAGTaGGTGCATCAGCCTGTTCCA | + |
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Preference number: 4 (lower is better) Translates to: FDPNIFPQTFLVWVSTKHHLPEK*VHQPVP Trigger: TGGAACAGGCTGATGCACCCACTTCTCAGGCAGGTG...GTGCTTTGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR TCA 90 bp | AAGGCTCTTTTTCCCTTCCATAGTACACTGAAATCAGTACCAGCAGCCTACAAATCGACTCCACCTGCCTaGGAAGTGGGTGCATCAGCC | + |
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Preference number: 4 (lower is better) Translates to: KALFPFHSTLKSVPAAYKSTPPA*EVGASA Trigger: GGCTGATGCACCCACTTCTCAGGCAGGTGGAGTCGA...TTTGTAGGCTGCTGGTACTGATTTCAGTGTACTATGGAAGGGAAAAAGAGCCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR GCA 90 bp | TCACTCAGGGTTCTGCTGGAAGATAAAAGGCTCTTTTTCCCTTCCATAGTACACGTCCCTCTCCAGCTCTaGCTGTGCGTGGAGCTTGTA | + |
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Preference number: 4 (lower is better) Translates to: SLRVLLEDKRLFFPSIVHVPLQL*LCVELV Trigger: TACAAGCTCCACGCACAGGCAGAGCTGGAGAGGGAC...GTGTACTATGGAAGGGAAAAAGAGCCTTTTATCTTCCAGCAGAACCCTGAGTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CCA 90 bp | CCTTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACAAAGCTGTCCTGTAGAGCTTTaGTCCCGGCCTCTTTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: PLTPTFSLRRSWFGSAQSCPVEL*SRPLSF Trigger: AAAGGAAAGAGGCCGGGACCAAAGCTCTACAGGACA...GCTTTGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR TCA 90 bp | AAGGCTCTTTTTCCCTTCCATAGTACACTGAAATCAGTACCAGCAGCCTACAAATTTGCCTCACGAGCGTaGTCTGGTCCTCCAGGTTCC | + |
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Preference number: 4 (lower is better) Translates to: KALFPFHSTLKSVPAAYKFASRA*SGPPGS Trigger: GGAACCTGGAGGACCAGATCACGCTCGTGAGGCAAA...TTTGTAGGCTGCTGGTACTGATTTCAGTGTACTATGGAAGGGAAAAAGAGCCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CCA 90 bp | TTGTACTTTTACAGGGTGAATTGCTTGCCAGTGCTGGTACTCTTATCTGTTGGGCTCTCCTCTTCCAGCTaGGACACGGCTTGTACACAC | + |
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Preference number: 4 (lower is better) Translates to: LYFYRVNCLPVLVLLSVGLSSSS*DTACTH Trigger: GTGTGTACAAGCCGTGTCCCAGCTGGAAGAGGAGAG...CCCAACAGATAAGAGTACCAGCACTGGCAAGCAATTCACCCTGTAAAAGTACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR TCA 90 bp | AGCCAGTGTTTGTACTTTTACAGGGTGAATTGCTTGCCAGTGCTGGTACTCTTACTCCACAGGCTGCTCTaGAATTTGCACCTCATCTGG | + |
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Preference number: 4 (lower is better) Translates to: SQCLYFYRVNCLPVLVLLLHRLL*NLHLIW Trigger: CCAGATGAGGTGCAAATTTCAGAGCAGCCTGTGGAG...TAAGAGTACCAGCACTGGCAAGCAATTCACCCTGTAAAAGTACAAACACTGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR GCA 90 bp | TCAGACGTTCTTGGTTTGGGTCAGCACAAAGCACTCCATAACATTCTTCACGATGGCTGCTCTGAAATTTaGACCTCATCTGGCGTCACG | + |
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Preference number: 4 (lower is better) Translates to: SDVLGLGQHKALHNILHDGCSEI*TSSGVT Trigger: CGTGACGCCAGATGAGGTGCAAATTTCAGAGCAGCC...ATCGTGAAGAATGTTATGGAGTGCTTTGTGCTGACCCAAACCAAGAACGTCTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR GCA 90 bp | TCAGACGTTCTTGGTTTGGGTCAGCACAAAGCACTCCATAACATTCTTCACGATACGGCTTGTACACACTaGTGGAAACGAGCTTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: SDVLGLGQHKALHNILHDTACTH*WKRASS Trigger: GCTGGAAGCTCGTTTCCAGCAGTGTGTACAAGCCGT...ATCGTGAAGAATGTTATGGAGTGCTTTGTGCTGACCCAAACCAAGAACGTCTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR GCA 90 bp | AAGGCTCTTTTTCCCTTCCATAGTACACTGAAATCAGTACCAGCAGCCTACAAAGAACTTGCACCCCACTaGGCAACTGCCTCTGTCTCT | + |
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Preference number: 4 (lower is better) Translates to: KALFPFHSTLKSVPAAYKELAPH*ATASVS Trigger: AGAGACAGAGGCAGTTGCGCAGTGGGGTGCAAGTTC...TTTGTAGGCTGCTGGTACTGATTTCAGTGTACTATGGAAGGGAAAAAGAGCCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CCA 90 bp | ATAGTTCAGGGTATGGTGATGCATCCATCACTCAGGGTTCTGCTGGAAGATAAAAGACAGAGTGGCCTCTaGGTTAAAGGTCTTGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: IVQGMVMHPSLRVLLEDKRQSGL*VKGLGL Trigger: GAGGCCAAGACCTTTAACCCAGAGGCCACTCTGTCT...TTTATCTTCCAGCAGAACCCTGAGTGATGGATGCATCACCATACCCTGAACTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR TCA 90 bp | AGCCAGTGTTTGTACTTTTACAGGGTGAATTGCTTGCCAGTGCTGGTACTCTTACTCCTTCGGGGATTCTaGCTCCTGAAGAGGAAAACT | + |
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Preference number: 4 (lower is better) Translates to: SQCLYFYRVNCLPVLVLLLLRGF*LLKRKT Trigger: AGTTTTCCTCTTCAGGAGTCAGAATCCCCGAAGGAG...TAAGAGTACCAGCACTGGCAAGCAATTCACCCTGTAAAAGTACAAACACTGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| 3UTR CAA 72 bp | GCAAAACAGCCAGTGTTTGTACTTTTACAGGGTGAATaGCTTGCCAGTGCTGGTACTCTTATCTGTTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: AKQPVFVLLQGE*LASAGTLICWG Trigger: CCCCCAACAGATAAGAGTACCAGCACTGGCAAGCAATTCACCCTGTAAAAGTACAAACACTGGCTGTTTTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR TCA 90 bp | TCAGACGTTCTTGGTTTGGGTCAGCACAAAGCACTCCATAACATTCTTCACGATTGCTCCCTGTACTGTTaGACCTCTTCATCGCGTTTT | + |
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Preference number: 4 (lower is better) Translates to: SDVLGLGQHKALHNILHDCSLYC*TSSSRF Trigger: AAAACGCGATGAAGAGGTTCAACAGTACAGGGAGCA...ATCGTGAAGAATGTTATGGAGTGCTTTGTGCTGACCCAAACCAAGAACGTCTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| 3UTR CAA 72 bp | AACAGCCAGTGTTTGTACTTTTACAGGGTGAATTGCTaGCCAGTGCTGGTACTCTTATCTGTTGGGGGAAAG | + |
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Preference number: 4 (lower is better) Translates to: NSQCLYFYRVNC*PVLVLLSVGGK Trigger: CTTTCCCCCAACAGATAAGAGTACCAGCACTGGCAAGCAATTCACCCTGTAAAAGTACAAACACTGGCTGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CCA 90 bp | TTTGTGAGCAGAGTCTTAAAATCTAATACCTGTAGCACAAAGTTGTGGATCCATAGCTCGTGGATTAGCTaGTCCCTCTCCTCTTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: FVSRVLKSNTCSTKLWIHSSWIS*SLSSSS Trigger: GCTGGAAGAGGAGAGGGACCAGCTAATCCACGAGCT...ATGGATCCACAACTTTGTGCTACAGGTATTAGATTTTAAGACTCTGCTCACAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| 3UTR CAA 72 bp | AAGTTGTGGATCCATATAGCAGAAATTGGCTGCCCTTaGACCCCAACATTTTCCCTCAGACGTTCTTGGTTT | + |
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Preference number: 4 (lower is better) Translates to: KLWIHIAEIGCP*TPTFSLRRSWF Trigger: AAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAAGGGCAGCCAATTTCTGCTATATGGATCCACAACTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CCA 90 bp | ATAGTTCAGGGTATGGTGATGCATCCATCACTCAGGGTTCTGCTGGAAGATAAAAAACAGTGTCAGTGCTaGCTTCTCATATTCTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: IVQGMVMHPSLRVLLEDKKQCQC*LLIFFL Trigger: GAGGAAGAATATGAGAAGCCAGCACTGACACTGTTT...TTTATCTTCCAGCAGAACCCTGAGTGATGGATGCATCACCATACCCTGAACTAT 43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR GCA 90 bp | ATAGTTCAGGGTATGGTGATGCATCCATCACTCAGGGTTCTGCTGGAAGATAAAGATAAACAGTGTCAGTaGTGGCTTCTCATATTCTTC | + |
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Preference number: 4 (lower is better) Translates to: IVQGMVMHPSLRVLLEDKDKQCQ*WLLIFF Trigger: GAAGAATATGAGAAGCCAGCACTGACACTGTTTATC...TTTATCTTCCAGCAGAACCCTGAGTGATGGATGCATCACCATACCCTGAACTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR GCA 90 bp | TTTGTGAGCAGAGTCTTAAAATCTAATACCTGTAGCACAAAGTTGTGGATCCATGGTGCTTCTAGTTGTTaGTGTAACTGCTCCTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: FVSRVLKSNTCSTKLWIHGASSC*CNCSFC Trigger: GCAGAAGGAGCAGTTACAGCAACAACTAGAAGCACC...ATGGATCCACAACTTTGTGCTACAGGTATTAGATTTTAAGACTCTGCTCACAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| 3UTR CAA 72 bp | AGCAGAGTCTTAAAATCTAATACCTGTAGCACAAAGTaGTGGATCCATATAGCAGAAATTGGCTGCCCTTTG | + |
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Preference number: 4 (lower is better) Translates to: SRVLKSNTCSTK*WIHIAEIGCPL Trigger: CAAAGGGCAGCCAATTTCTGCTATATGGATCCACAACTTTGTGCTACAGGTATTAGATTTTAAGACTCTGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CCA 90 bp | TGCCGGGCCTCTGCTTCCAGGGGTCGCAGAGCCTCCCTCATCTCCTaGATCTCCGCCTGGGTGTCCTGTAGAGCTTTGGTCCCGGCCTCT | + |
|
Preference number: 5 (lower is better) Translates to: CRASASRGRRASLIS*ISAWVSCRALVPAS Trigger: AGAGGCCGGGACCAAAGCTCTACAGGACACCCAGGCGGAGATCCAGGAGATGAGGGAGGCTCTGCGACCCCTGGAAGCAGAGGCCCGGCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS GCA 90 bp | CTTCACCGTCCGGATCTCCTCCCTGAGCCCGTCCCTCTCCAGCTCTaGCTGTGCGTGGAGCTTGTAGGCAGCCAGGATGTCCTGGTGGAC | + |
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Preference number: 5 (lower is better) Translates to: LHRPDLLPEPVPLQL*LCVELVGSQDVLVD Trigger: GTCCACCAGGACATCCTGGCTGCCTACAAGCTCCACGCACAGGCAGAGCTGGAGAGGGACGGGCTCAGGGAGGAGATCCGGACGGTGAAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS GCA 90 bp | CTGACAGGCATCTCGGAGCTGGGTCAGTTCTTCCGAGAGCTGGGCTaGCCGAGTGGTCAGCGCTTCCCTGCAGTCGGCAAACTGAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: LTGISELGQFFRELG*PSGQRFPAVGKLSH Trigger: GTGGCTCAGTTTGCCGACTGCAGGGAAGCGCTGACCACTCGGGCAGCCCAGCTCTCGGAAGAACTGACCCAGCTCCGAGATGCCTGTCAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS GCA 90 bp | CTGGTCCTCCAGGTTCCTGTTCTGAAGTTGGAGCTGCCGGGCCTCTaGTTCCAGGGGTCGCAGAGCCTCCCTCATCTCCTGGATCTCCGC | + |
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Preference number: 5 (lower is better) Translates to: LVLQVPVLKLELPGL*FQGSQSLPHLLDLR Trigger: GCGGAGATCCAGGAGATGAGGGAGGCTCTGCGACCCCTGGAAGCAGAGGCCCGGCAGCTCCAACTTCAGAACAGGAACCTGGAGGACCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CCA 90 bp | TGCTGCACCTCCTGCAGGGCTGGCTCCCGGAGTAGCACGAGCTCGTaGATTAGCTGGTCCCTCTCCTCTTCCAGCTGGGACACGGCTTGT | + |
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Preference number: 5 (lower is better) Translates to: CCTSCRAGSRSSTSS*ISWSLSSSSWDTAC Trigger: ACAAGCCGTGTCCCAGCTGGAAGAGGAGAGGGACCAGCTAATCCACGAGCTCGTGCTACTCCGGGAGCCAGCCCTGCAGGAGGTGCAGCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS GCA 90 bp | TCAGTTCTTCCGAGAGCTGGGCTGCCCGAGTGGTCAGCGCTTCCCTaGAGTCGGCAAACTGAGCCACATCCTGCTGACGGCACTCCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: SVLPRAGLPEWSALP*SRQTEPHPADGTPA Trigger: AGCTGGAGTGCCGTCAGCAGGATGTGGCTCAGTTTGCCGACTGCAGGGAAGCGCTGACCACTCGGGCAGCCCAGCTCTCGGAAGAACTGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CCA 90 bp | TGGTCCCTCTCCTCTTCCAGCTGGGACACGGCTTGTACACACTGCTaGAAACGAGCTTCCAGCCGCTCCAGGTCCTCCACGCTGAGGGGA | + |
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Preference number: 5 (lower is better) Translates to: WSLSSSSWDTACTHC*KRASSRSRSSTLRG Trigger: TCCCCTCAGCGTGGAGGACCTGGAGCGGCTGGAAGCTCGTTTCCAGCAGTGTGTACAAGCCGTGTCCCAGCTGGAAGAGGAGAGGGACCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CCA 90 bp | TCCTGCAGGGCTGGCTCCCGGAGTAGCACGAGCTCGTGGATTAGCTaGTCCCTCTCCTCTTCCAGCTGGGACACGGCTTGTACACACTGC | + |
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Preference number: 5 (lower is better) Translates to: SCRAGSRSSTSSWIS*SLSSSSWDTACTHC Trigger: GCAGTGTGTACAAGCCGTGTCCCAGCTGGAAGAGGAGAGGGACCAGCTAATCCACGAGCTCGTGCTACTCCGGGAGCCAGCCCTGCAGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CCA 90 bp | CATCTCGGAGCTGGGTCAGTTCTTCCGAGAGCTGGGCTGCCCGAGTaGTCAGCGCTTCCCTGCAGTCGGCAAACTGAGCCACATCCTGCT | + |
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Preference number: 5 (lower is better) Translates to: HLGAGSVLPRAGLPE*SALPCSRQTEPHPA Trigger: AGCAGGATGTGGCTCAGTTTGCCGACTGCAGGGAAGCGCTGACCACTCGGGCAGCCCAGCTCTCGGAAGAACTGACCCAGCTCCGAGATG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CCA 90 bp | GCTTCCAGGGGTCGCAGAGCCTCCCTCATCTCCTGGATCTCCGCCTaGGTGTCCTGTAGAGCTTTGGTCCCGGCCTCTTTCCTTTCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: ASRGRRASLISWISA*VSCRALVPASFLSR Trigger: CCTGGAAAGGAAAGAGGCCGGGACCAAAGCTCTACAGGACACCCAGGCGGAGATCCAGGAGATGAGGGAGGCTCTGCGACCCCTGGAAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS TCA 90 bp | GCTGAGGCTCATACTCCTCCTCCAGGCCCTGGCGGCTCTCGGCCATaGGATTTTCAAACTGTGTCGACAGCCGTCGGCTCTCCTGGAGAA | + |
|
Preference number: 5 (lower is better) Translates to: AEAHTPPPGPGGSRP*DFQTVSTAVGSPGE Trigger: TTCTCCAGGAGAGCCGACGGCTGTCGACACAGTTTGAAAATCTCATGGCCGAGAGCCGCCAGGGCCTGGAGGAGGAGTATGAGCCTCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CCA 90 bp | AGTAGCACGAGCTCGTGGATTAGCTGGTCCCTCTCCTCTTCCAGCTaGGACACGGCTTGTACACACTGCTGGAAACGAGCTTCCAGCCGC | + |
|
Preference number: 5 (lower is better) Translates to: SSTSSWISWSLSSSS*DTACTHCWKRASSR Trigger: GCGGCTGGAAGCTCGTTTCCAGCAGTGTGTACAAGCCGTGTCCCAGCTGGAAGAGGAGAGGGACCAGCTAATCCACGAGCTCGTGCTACT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS TCA 90 bp | GCAAGGCTCATCCTCAGCCGCTCCATCTCCTTGTTCTTCTGTTGCTaGACTTGCACCCCACTGCGCAACTGCCTCTGTCTCTCCTCCATC | + |
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Preference number: 5 (lower is better) Translates to: ARLILSRSISLFFCC*TCTPLRNCLCLSSI Trigger: GATGGAGGAGAGACAGAGGCAGTTGCGCAGTGGGGTGCAAGTTCAGCAACAGAAGAACAAGGAGATGGAGCGGCTGAGGATGAGCCTTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CCA 90 bp | TCGGCCATGAGATTTTCAAACTGTGTCGACAGCCGTCGGCTCTCCTaGAGAAAGTGCCCATCGCTCTGGGTCGGGGGTGCTTCTAGTTGT | + |
|
Preference number: 5 (lower is better) Translates to: SAMRFSNCVDSRRLS*RKCPSLWVGGASSC Trigger: ACAACTAGAAGCACCCCCGACCCAGAGCGATGGGCACTTTCTCCAGGAGAGCCGACGGCTGTCGACACAGTTTGAAAATCTCATGGCCGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS TCA 90 bp | CCCTGTACTGTTGAACCTCTTCATCGCGTTTTTGCCTCACGAGCGTaGTCTGGTCCTCCAGGTTCCTGTTCTGAAGTTGGAGCTGCCGGG | + |
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Preference number: 5 (lower is better) Translates to: PCTVEPLHRVFASRA*SGPPGSCSEVGAAG Trigger: CCCGGCAGCTCCAACTTCAGAACAGGAACCTGGAGGACCAGATCACGCTCGTGAGGCAAAAACGCGATGAAGAGGTTCAACAGTACAGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS GCA 90 bp | CAAGCAGTTGGGCTCTTAGCTGGCTCCACAGGCTGCTCTGAAATTTaGACCTCATCTGGCGTCACGGATTCCTCCACAGACAGCATCTCC | + |
|
Preference number: 5 (lower is better) Translates to: QAVGLLAGSTGCSEI*TSSGVTDSSTDSIS Trigger: GGAGATGCTGTCTGTGGAGGAATCCGTGACGCCAGATGAGGTGCAAATTTCAGAGCAGCCTGTGGAGCCAGCTAAGAGCCCAACTGCTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS GCA 90 bp | AGATTTTCAAACTGTGTCGACAGCCGTCGGCTCTCCTGGAGAAAGTaGCCATCGCTCTGGGTCGGGGGTGCTTCTAGTTGTTGCTGTAAC | + |
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Preference number: 5 (lower is better) Translates to: RFSNCVDSRRLSWRK*PSLWVGGASSCCCN Trigger: GTTACAGCAACAACTAGAAGCACCCCCGACCCAGAGCGATGGGCACTTTCTCCAGGAGAGCCGACGGCTGTCGACACAGTTTGAAAATCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CAA 90 bp | CCTTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACAAAGCCAGCTGGGACACGGCTaGTACACACTGCTGGAAACG | + |
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Preference number: 5 (lower is better) Translates to: PLTPTFSLRRSWFGSAQSQLGHG*YTLLET Trigger: CGTTTCCAGCAGTGTGTACAAGCCGTGTCCCAGCTG...GCTTTGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CAA 90 bp | TCAGACGTTCTTGGTTTGGGTCAGCACAAAGCACTCCATAACATTCTTCACGATGATGTCCTGGTGGACTaGCTGCACCTCCTGCAGGGC | + |
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Preference number: 5 (lower is better) Translates to: SDVLGLGQHKALHNILHDDVLVD*LHLLQG Trigger: GCCCTGCAGGAGGTGCAGCAAGTCCACCAGGACATC...ATCGTGAAGAATGTTATGGAGTGCTTTGTGCTGACCCAAACCAAGAACGTCTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CAA 90 bp | CTGCCCTTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACAGCACTCCAGCTGGTATaGGTAAGCCACGCATTCCTT | + |
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Preference number: 5 (lower is better) Translates to: LPFDPNIFPQTFLVWVSTALQLV*VSHAFL Trigger: AAGGAATGCGTGGCTTACCAATACCAGCTGGAGTGC...TGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAAGGGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CAA 90 bp | TCAGACGTTCTTGGTTTGGGTCAGCACAAAGCACTCCATAACATTCTTCACGATGTTCCTGTTCTGAAGTaGGAGCTGCCGGGCCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: SDVLGLGQHKALHNILHDVPVLK*ELPGLC Trigger: GCAGAGGCCCGGCAGCTCCAACTTCAGAACAGGAAC...ATCGTGAAGAATGTTATGGAGTGCTTTGTGCTGACCCAAACCAAGAACGTCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CAA 90 bp | TTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACAAAGCACCTCTTCATCGCGTTTTaGCCTCACGAGCGTGATCTG | + |
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Preference number: 5 (lower is better) Translates to: FDPNIFPQTFLVWVSTKHLFIAF*PHERDL Trigger: CAGATCACGCTCGTGAGGCAAAAACGCGATGAAGAG...GTGCTTTGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CCA 90 bp | CGCCTCGTCTGGCTGCCTCGATTCGTCGATAAACAGTGTCAGTGCTaGCTTCTCATATTCTTCCTCATAAAAACTCTCTTCAAAGTCCCC | + |
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Preference number: 5 (lower is better) Translates to: RLVWLPRFVDKQCQC*LLIFFLIKTLFKVP Trigger: GGGGACTTTGAAGAGAGTTTTTATGAGGAAGAATATGAGAAGCCAGCACTGACACTGTTTATCGACGAATCGAGGCAGCCAGACGAGGCG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CAA 90 bp | CCTTTGACCCCAACATTTTCCCTCAGACGTTCTTGGTTTGGGTCAGCACAAAGCGCCTGTTCCAGACTCTaGGGTAGCATAGCCTTATAT | + |
|
Preference number: 5 (lower is better) Translates to: PLTPTFSLRRSWFGSAQSACSRL*GSIALY Trigger: ATATAAGGCTATGCTACCCAAGAGTCTGGAACAGGC...GCTTTGTGCTGACCCAAACCAAGAACGTCTGAGGGAAAATGTTGGGGTCAAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CAA 90 bp | TCAGACGTTCTTGGTTTGGGTCAGCACAAAGCACTCCATAACATTCTTCACGATCTGCTCCCTGTACTGTaGAACCTCTTCATCGCGTTT | + |
|
Preference number: 5 (lower is better) Translates to: SDVLGLGQHKALHNILHDLLPVL*NLFIAF Trigger: AAACGCGATGAAGAGGTTCAACAGTACAGGGAGCAG...ATCGTGAAGAATGTTATGGAGTGCTTTGTGCTGACCCAAACCAAGAACGTCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CAA 90 bp | ATAGTTCAGGGTATGGTGATGCATCCATCACTCAGGGTTCTGCTGGAAGATAAACTCCTTGTTCTTCTGTaGCTGAACTTGCACCCCACT | + |
|
Preference number: 5 (lower is better) Translates to: IVQGMVMHPSLRVLLEDKLLVLL*LNLHPT Trigger: AGTGGGGTGCAAGTTCAGCAACAGAAGAACAAGGAG...TTTATCTTCCAGCAGAACCCTGAGTGATGGATGCATCACCATACCCTGAACTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS-3UTR CAA 90 bp | TTTGTGAGCAGAGTCTTAAAATCTAATACCTGTAGCACAAAGTTGTGGATCCATAACAGTCCCTGGGGATaGTGCCTCGACTCCACCTGC | + |
|
Preference number: 5 (lower is better) Translates to: FVSRVLKSNTCSTKLWIHNSPWG*CLDSTC Trigger: GCAGGTGGAGTCGAGGCACAATCCCCAGGGACTGTT...ATGGATCCACAACTTTGTGCTACAGGTATTAGATTTTAAGACTCTGCTCACAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS GCA 72 bp | GCAGCCAGGATGTCCTGGTGGACTTGCTGCACCTCCTaGAGGGCTGGCTCCCGGAGTAGCACGAGCTCGTGG | + |
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Preference number: 6 (lower is better) Translates to: AARMSWWTCCTS*RAGSRSSTSSW Trigger: CCACGAGCTCGTGCTACTCCGGGAGCCAGCCCTGCAGGAGGTGCAGCAAGTCCACCAGGACATCCTGGCTGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS GCA 72 bp | CCGAGAGCTGGGCTGCCCGAGTGGTCAGCGCTTCCCTaGAGTCGGCAAACTGAGCCACATCCTGCTGACGGC | + |
|
Preference number: 6 (lower is better) Translates to: PRAGLPEWSALP*SRQTEPHPADG Trigger: GCCGTCAGCAGGATGTGGCTCAGTTTGCCGACTGCAGGGAAGCGCTGACCACTCGGGCAGCCCAGCTCTCGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS GCA 72 bp | CCGGATCTCCTCCCTGAGCCCGTCCCTCTCCAGCTCTaGCTGTGCGTGGAGCTTGTAGGCAGCCAGGATGTC | + |
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Preference number: 6 (lower is better) Translates to: PDLLPEPVPLQL*LCVELVGSQDV Trigger: GACATCCTGGCTGCCTACAAGCTCCACGCACAGGCAGAGCTGGAGAGGGACGGGCTCAGGGAGGAGATCCGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CAA 90 bp | TTGCCTCACGAGCGTGATCTGGTCCTCCAGGTTCCTGTTCTGAAGTaGGAGCTGCCGGGCCTCTGCTTCCAGGGGTCGCAGAGCCTCCCT | + |
|
Preference number: 6 (lower is better) Translates to: LPHERDLVLQVPVLK*ELPGLCFQGSQSLP Trigger: AGGGAGGCTCTGCGACCCCTGGAAGCAGAGGCCCGGCAGCTCCAACTTCAGAACAGGAACCTGGAGGACCAGATCACGCTCGTGAGGCAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS TCA 72 bp | GGAAACGAGCTTCCAGCCGCTCCAGGTCCTCCACGCTaGGGGGATCCTCCTCGGTGTTGGGAATCGGTTGAG | + |
|
Preference number: 6 (lower is better) Translates to: GNELPAAPGPPR*GDPPRCWESVE Trigger: CTCAACCGATTCCCAACACCGAGGAGGATCCCCTCAGCGTGGAGGACCTGGAGCGGCTGGAAGCTCGTTTCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS GCA 72 bp | ATCTCGGAGCTGGGTCAGTTCTTCCGAGAGCTGGGCTaGCCGAGTGGTCAGCGCTTCCCTGCAGTCGGCAAA | + |
|
Preference number: 6 (lower is better) Translates to: ISELGQFFRELG*PSGQRFPAVGK Trigger: TTTGCCGACTGCAGGGAAGCGCTGACCACTCGGGCAGCCCAGCTCTCGGAAGAACTGACCCAGCTCCGAGAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS GCA 72 bp | CAGGTTCCTGTTCTGAAGTTGGAGCTGCCGGGCCTCTaGTTCCAGGGGTCGCAGAGCCTCCCTCATCTCCTG | + |
|
Preference number: 6 (lower is better) Translates to: QVPVLKLELPGL*FQGSQSLPHLL Trigger: CAGGAGATGAGGGAGGCTCTGCGACCCCTGGAAGCAGAGGCCCGGCAGCTCCAACTTCAGAACAGGAACCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CCA 72 bp | GCTGGCTCCCGGAGTAGCACGAGCTCGTGGATTAGCTaGTCCCTCTCCTCTTCCAGCTGGGACACGGCTTGT | + |
|
Preference number: 6 (lower is better) Translates to: AGSRSSTSSWIS*SLSSSSWDTAC Trigger: ACAAGCCGTGTCCCAGCTGGAAGAGGAGAGGGACCAGCTAATCCACGAGCTCGTGCTACTCCGGGAGCCAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS TCA 72 bp | ACGCTGAGGGGATCCTCCTCGGTGTTGGGAATCGGTTaGGCAGGCAGGCTTCCCTCCGTGGCCACCATTTCT | + |
|
Preference number: 6 (lower is better) Translates to: TLRGSSSVLGIG*AGRLPSVATIS Trigger: AGAAATGGTGGCCACGGAGGGAAGCCTGCCTGCTCAACCGATTCCCAACACCGAGGAGGATCCCCTCAGCGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CCA 72 bp | TCCTCTTCCAGCTGGGACACGGCTTGTACACACTGCTaGAAACGAGCTTCCAGCCGCTCCAGGTCCTCCACG | + |
|
Preference number: 6 (lower is better) Translates to: SSSSWDTACTHC*KRASSRSRSST Trigger: CGTGGAGGACCTGGAGCGGCTGGAAGCTCGTTTCCAGCAGTGTGTACAAGCCGTGTCCCAGCTGGAAGAGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CCA 72 bp | TCTCCTGGATCTCCGCCTGGGTGTCCTGTAGAGCTTTaGTCCCGGCCTCTTTCCTTTCCAGGAGCCGGAGCA | + |
|
Preference number: 6 (lower is better) Translates to: SPGSPPGCPVEL*SRPLSFPGAGA Trigger: TGCTCCGGCTCCTGGAAAGGAAAGAGGCCGGGACCAAAGCTCTACAGGACACCCAGGCGGAGATCCAGGAGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CCA 72 bp | TCTGCTTCCAGGGGTCGCAGAGCCTCCCTCATCTCCTaGATCTCCGCCTGGGTGTCCTGTAGAGCTTTGGTC | + |
|
Preference number: 6 (lower is better) Translates to: SASRGRRASLIS*ISAWVSCRALV Trigger: GACCAAAGCTCTACAGGACACCCAGGCGGAGATCCAGGAGATGAGGGAGGCTCTGCGACCCCTGGAAGCAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CAA 72 bp | ATCTCCTGGATCTCCGCCTGGGTGTCCTGTAGAGCTTaGGTCCCGGCCTCTTTCCTTTCCAGGAGCCGGAGC | + |
|
Preference number: 6 (lower is better) Translates to: ISWISAWVSCRA*VPASFLSRSRS Trigger: GCTCCGGCTCCTGGAAAGGAAAGAGGCCGGGACCAAAGCTCTACAGGACACCCAGGCGGAGATCCAGGAGAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS GCA 72 bp | AACTGTGTCGACAGCCGTCGGCTCTCCTGGAGAAAGTaGCCATCGCTCTGGGTCGGGGGTGCTTCTAGTTGT | + |
|
Preference number: 6 (lower is better) Translates to: NCVDSRRLSWRK*PSLWVGGASSC Trigger: ACAACTAGAAGCACCCCCGACCCAGAGCGATGGGCACTTTCTCCAGGAGAGCCGACGGCTGTCGACACAGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CCA 72 bp | AGCCGTCGGCTCTCCTGGAGAAAGTGCCCATCGCTCTaGGTCGGGGGTGCTTCTAGTTGTTGCTGTAACTGC | + |
|
Preference number: 6 (lower is better) Translates to: SRRLSWRKCPSL*VGGASSCCCNC Trigger: GCAGTTACAGCAACAACTAGAAGCACCCCCGACCCAGAGCGATGGGCACTTTCTCCAGGAGAGCCGACGGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS TCA 72 bp | ACAGTCCCTGGGGATTGTGCCTCGACTCCACCTGCCTaGGAAGTGGGTGCATCAGCCTGTTCCAGACTCTTG | + |
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Preference number: 6 (lower is better) Translates to: TVPGDCASTPPA*EVGASACSRLL Trigger: CAAGAGTCTGGAACAGGCTGATGCACCCACTTCTCAGGCAGGTGGAGTCGAGGCACAATCCCCAGGGACTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CCA 72 bp | CTGGGGATTGTGCCTCGACTCCACCTGCCTGAGAAGTaGGTGCATCAGCCTGTTCCAGACTCTTGGGTAGCA | + |
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Preference number: 6 (lower is better) Translates to: LGIVPRLHLPEK*VHQPVPDSWVA Trigger: TGCTACCCAAGAGTCTGGAACAGGCTGATGCACCCACTTCTCAGGCAGGTGGAGTCGAGGCACAATCCCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CCA 72 bp | AGCTCGTGGATTAGCTGGTCCCTCTCCTCTTCCAGCTaGGACACGGCTTGTACACACTGCTGGAAACGAGCT | + |
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Preference number: 6 (lower is better) Translates to: SSWISWSLSSSS*DTACTHCWKRA Trigger: AGCTCGTTTCCAGCAGTGTGTACAAGCCGTGTCCCAGCTGGAAGAGGAGAGGGACCAGCTAATCCACGAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CAA 90 bp | TTCAGCAAGGCTCATCCTCAGCCGCTCCATCTCCTTGTTCTTCTGTaGCTGAACTTGCACCCCACTGCGCAACTGCCTCTGTCTCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: FSKAHPQPLHLLVLL*LNLHPTAQLPLSLL Trigger: GAGGAGAGACAGAGGCAGTTGCGCAGTGGGGTGCAAGTTCAGCAACAGAAGAACAAGGAGATGGAGCGGCTGAGGATGAGCCTTGCTGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CAA 72 bp | CTGAGCCACATCCTGCTGACGGCACTCCAGCTGGTATaGGTAAGCCACGCATTCCTTGGTCACCTTGAACAG | + |
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Preference number: 6 (lower is better) Translates to: LSHILLTALQLV*VSHAFLGHLEQ Trigger: CTGTTCAAGGTGACCAAGGAATGCGTGGCTTACCAATACCAGCTGGAGTGCCGTCAGCAGGATGTGGCTCAG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CAA 90 bp | GTCGGCAAACTGAGCCACATCCTGCTGACGGCACTCCAGCTGGTATaGGTAAGCCACGCATTCCTTGGTCACCTTGAACAGCTTCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: VGKLSHILLTALQLV*VSHAFLGHLEQLLL Trigger: AAGCAGAAGCTGTTCAAGGTGACCAAGGAATGCGTGGCTTACCAATACCAGCTGGAGTGCCGTCAGCAGGATGTGGCTCAGTTTGCCGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CAA 90 bp | CTCCTCCAGCTGCTCCCTGTACTGTTGAACCTCTTCATCGCGTTTTaGCCTCACGAGCGTGATCTGGTCCTCCAGGTTCCTGTTCTGAAG | + |
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Preference number: 6 (lower is better) Translates to: LLQLLPVLLNLFIAF*PHERDLVLQVPVLK Trigger: CTTCAGAACAGGAACCTGGAGGACCAGATCACGCTCGTGAGGCAAAAACGCGATGAAGAGGTTCAACAGTACAGGGAGCAGCTGGAGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS TCA 72 bp | TTAAAGGTCTTGGCCTCCTTCGGGGATTCTGACTCCTaGAGAGGAAAACTCGCCTCGGTGTGTGGTTCCCTC | + |
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Preference number: 6 (lower is better) Translates to: LKVLASFGDSDS*RGKLASVCGSL Trigger: GAGGGAACCACACACCGAGGCGAGTTTTCCTCTTCAGGAGTCAGAATCCCCGAAGGAGGCCAAGACCTTTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS GCA 72 bp | TCACAAGCAGTTGGGCTCTTAGCTGGCTCCACAGGCTaGTCTGAAATTTGCACCTCATCTGGCGTCACGGAT | + |
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Preference number: 6 (lower is better) Translates to: SQAVGLLAGSTG*SEICTSSGVTD Trigger: ATCCGTGACGCCAGATGAGGTGCAAATTTCAGAGCAGCCTGTGGAGCCAGCTAAGAGCCCAACTGCTTGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS TCA 72 bp | GTTGAACCTCTTCATCGCGTTTTTGCCTCACGAGCGTaGTCTGGTCCTCCAGGTTCCTGTTCTGAAGTTGGA | + |
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Preference number: 6 (lower is better) Translates to: VEPLHRVFASRA*SGPPGSCSEVG Trigger: TCCAACTTCAGAACAGGAACCTGGAGGACCAGATCACGCTCGTGAGGCAAAAACGCGATGAAGAGGTTCAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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| CDS CCA 72 bp | TGGCTGCCTCGATTCGTCGATAAACAGTGTCAGTGCTaGCTTCTCATATTCTTCCTCATAAAAACTCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: WLPRFVDKQCQC*LLIFFLIKTLF Trigger: GAAGAGAGTTTTTATGAGGAAGAATATGAGAAGCCAGCACTGACACTGTTTATCGACGAATCGAGGCAGCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102599.4 |
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