Pregenerated sensors for SYNA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000085957Ensembl transcript IDs: ENSMUST00000149604.5
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AGGCTGTGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACCCAGGGCAGAAGCAATaGCCAGGCCCGCGAGGAGAG | + |
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Preference number: 4 (lower is better) Translates to: RLWLTRMGVLFYRSIDRDPGQKQ*PGPRGE Trigger: CTCTCCTCGCGGGCCTGGGCATTGCTTCTGCCCTGG...GTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCACAGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | AGATCCATAGATAGAGACAAGGTGGAAGTCGGTTATGGTTCACGAGCTCCTCCCATGCAGAGAGGGGCCTaGGAGGTGAGGATCGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: RSIDRDKVEVGYGSRAPPMQRGA*EVRIVW Trigger: CCAGACGATCCTCACCTCCCAGGCCCCTCTCTGCAT...GGGAGGAGCTCGTGAACCATAACCGACTTCCACCTTGTCTCTATCTATGGATCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR TCA 90 bp | CTTTTCTACAGATCCATAGATAGAGACAAGGTGGAAGTCGGTTATGGTTCACGACGTCTGGGTGGAGAGTaGGCCCCATATGGGGCGCTG | + |
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Preference number: 4 (lower is better) Translates to: LFYRSIDRDKVEVGYGSRRLGGE*APYGAL Trigger: CAGCGCCCCATATGGGGCTCACTCTCCACCCAGACG...TCGTGAACCATAACCGACTTCCACCTTGTCTCTATCTATGGATCTGTAGAAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR TCA 90 bp | CTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGGTGGAAGAGGGGCCTGGGAGGTaGGGATCGTCTGGGTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: LTRMGVLFYRSIDRDKVEEGPGR*GSSGWR Trigger: TCTCCACCCAGACGATCCTCACCTCCCAGGCCCCTC...TTCCACCTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | CTGTGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGACCTCCAGGGGGTGGTaGGGTAGGTGTGGCAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: LWLTRMGVLFYRSIDRDKTSRGW*GRCGSG Trigger: TCCACTGCCACACCTACCCCACCACCCCCTGGAGGT...CTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCACAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR TCA 90 bp | TTCTACAGATCCATAGATAGAGACAAGGTGGAAGTCGGTTATGGTTCACGAGCTCCCGCTGGTCAGGGTTaGCAAAAGAGGAGTGGGGAG | + |
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Preference number: 4 (lower is better) Translates to: FYRSIDRDKVEVGYGSRAPAGQG*QKRSGE Trigger: CTCCCCACTCCTCTTTTGTCAACCCTGACCAGCGGG...AGCTCGTGAACCATAACCGACTTCCACCTTGTCTCTATCTATGGATCTGTAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR TCA 90 bp | CTGTGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGGTAGTGAGGCATCCCTaGGTTCAGGGAAGGGGGTCC | + |
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Preference number: 4 (lower is better) Translates to: LWLTRMGVLFYRSIDRDKVVRHP*VQGRGS Trigger: GGACCCCCTTCCCTGAACTCAGGGATGCCTCACTAC...CTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCACAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | AGGCTGTGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACGAGGTGAGGATCGTCTaGGTGGAGAGTGAGCCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: RLWLTRMGVLFYRSIDRDEVRIV*VESEPH Trigger: ATGGGGCTCACTCTCCACCCAGACGATCCTCACCTC...GTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCACAGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | AGGCTGTGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGCAGCACTCTTCCTaGAGGAAGAGGCAGGTGCCC | + |
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Preference number: 4 (lower is better) Translates to: RLWLTRMGVLFYRSIDRDKQHSS*RKRQVP Trigger: GGGCACCTGCCTCTTCCTCCAGGAAGAGTGCTGCTT...GTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCACAGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | TACAGATCCATAGATAGAGACAAGGTGGAAGTCGGTTATGGTTCACGAGCTCCTTCCTCCGGGGGCTCTTaGGGAAGTCTCTTGTACTGG | + |
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Preference number: 4 (lower is better) Translates to: YRSIDRDKVEVGYGSRAPSSGGS*GSLLYW Trigger: CCAGTACAAGAGACTTCCCCAAGAGCCCCCGGAGGA...AGGAGCTCGTGAACCATAACCGACTTCCACCTTGTCTCTATCTATGGATCTGTA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR TCA 90 bp | CTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGGTGGAAGTCACGCTGGTGATCTaGAGGAAAGCAATGGCCCGC | + |
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Preference number: 4 (lower is better) Translates to: LTRMGVLFYRSIDRDKVEVTLVI*RKAMAR Trigger: GCGGGCCATTGCTTTCCTTCAGATCACCAGCGTGAC...TTCCACCTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | CTGTGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGAGAGTGAGCCCCATATaGGGCGCTGGGCAGATTCAT | + |
|
Preference number: 4 (lower is better) Translates to: LWLTRMGVLFYRSIDRDKRVSPI*GAGQIH Trigger: ATGAATCTGCCCAGCGCCCCATATGGGGCTCACTCT...CTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR TCA 90 bp | AGGCTGTGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACTCCGGGCTGAGTACATaGTTCGAAGTTTCATGGGTG | + |
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Preference number: 4 (lower is better) Translates to: RLWLTRMGVLFYRSIDRDSGLST*FEVSWV Trigger: CACCCATGAAACTTCGAATCATGTACTCAGCCCGGA...GTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCACAGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR TCA 90 bp | CTGTGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGAGAGAATGGGAGCCATaGGGGAAGTCAACCAAGAGG | + |
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Preference number: 4 (lower is better) Translates to: LWLTRMGVLFYRSIDRDKREWEP*GKSTKR Trigger: CCTCTTGGTTGACTTCCCTCATGGCTCCCATTCTCT...CTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | CTGTGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGCTATGGATTGGTGGTTaGCAGAGGGGGAGAGCTGAA | + |
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Preference number: 4 (lower is better) Translates to: LWLTRMGVLFYRSIDRDKLWIGG*QRGRAE Trigger: TTCAGCTCTCCCCCTCTGCCAACCACCAATCCATAG...CTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCACAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | TGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGGTGGACAGATCTATGGATTaGTGGTTGGCAGAGGGGGAG | + |
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Preference number: 4 (lower is better) Translates to: WLTRMGVLFYRSIDRDKVDRSMD*WLAEGE Trigger: CTCCCCCTCTGCCAACCACCAATCCATAGATCTGTC...CACCTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR TCA 90 bp | AGGCTGTGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACTTGGAAATACACAGTTaGGGTGGTGATACCCGCGAT | + |
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Preference number: 4 (lower is better) Translates to: RLWLTRMGVLFYRSIDRDLEIHS*GGDTRD Trigger: ATCGCGGGTATCACCACCTCAACTGTGTATTTCCAA...GTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCACAGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR TCA 90 bp | CTGTGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGCCTTCGGTGGTGGTGTaGATGAAAGAACTCATTCGC | + |
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Preference number: 4 (lower is better) Translates to: LWLTRMGVLFYRSIDRDKPSVVV*MKELIR Trigger: GCGAATGAGTTCTTTCATTCACACCACCACCGAAGG...CTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | CTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGGTGGAAAGAGAGCGCTGGGTTTaGATGGATAAGCAGACCCAG | + |
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Preference number: 4 (lower is better) Translates to: LTRMGVLFYRSIDRDKVERERWV*MDKQTQ Trigger: CTGGGTCTGCTTATCCATCCAAACCCAGCGCTCTCT...TTCCACCTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | CTGTGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGATGGCTAGAGAGCGCTaGGTTTGGATGGATAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: LWLTRMGVLFYRSIDRDKMARER*VWMDKQ Trigger: CTGCTTATCCATCCAAACCCAGCGCTCTCTAGCCAT...CTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | CTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGGTGGAAGGAGTGGGGAGTCAATaGTTGGAAATTCTGGAGGCG | + |
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Preference number: 4 (lower is better) Translates to: LTRMGVLFYRSIDRDKVEGVGSQ*LEILEA Trigger: CGCCTCCAGAATTTCCAACCATTGACTCCCCACTCC...TTCCACCTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | TGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGGTGTGGAGGACAGATCTATaGATTGGTGGTTGGCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: WLTRMGVLFYRSIDRDKVWRTDL*IGGWQR Trigger: CCTCTGCCAACCACCAATCCATAGATCTGTCCTCCA...CACCTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR TCA 90 bp | CTGTGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGGAAGGTGGCATGGTTTaGATTCTTGAAGAAGCGGGA | + |
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Preference number: 4 (lower is better) Translates to: LWLTRMGVLFYRSIDRDKEGGMV*ILEEAG Trigger: TCCCGCTTCTTCAAGAATTCAAACCATGCCACCTTC...CTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR TCA 90 bp | TACAGATCCATAGATAGAGACAAGGTGGAAGTCGGTTATGGTTCACGAGCTCCTAAACACCAGAGGAGTTaGGGCAGAAGGAGTATGTTA | + |
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Preference number: 4 (lower is better) Translates to: YRSIDRDKVEVGYGSRAPKHQRS*GRRSML Trigger: TAACATACTCCTTCTGCCTCAACTCCTCTGGTGTTT...AGGAGCTCGTGAACCATAACCGACTTCCACCTTGTCTCTATCTATGGATCTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | AGATCCATAGATAGAGACAAGGTGGAAGTCGGTTATGGTTCACGAGCTCCTCCCGGGTCTTTGTGTCCCTaGAGTTTAATCTTGAAGTAT | + |
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Preference number: 4 (lower is better) Translates to: RSIDRDKVEVGYGSRAPPGSLCP*SLILKY Trigger: ATACTTCAAGATTAAACTCCAGGGACACAAAGACCC...GGGAGGAGCTCGTGAACCATAACCGACTTCCACCTTGTCTCTATCTATGGATCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | TTCTACAGATCCATAGATAGAGACAAGGTGGAAGTCGGTTATGGTTCACGAGCTCTGGTACTGAAAGAGTaGATAGGGGTCTTTGTGTCC | + |
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Preference number: 4 (lower is better) Translates to: FYRSIDRDKVEVGYGSRALVLKE*IGVFVS Trigger: GGACACAAAGACCCCTATCCACTCTTTCAGTACCAG...AGCTCGTGAACCATAACCGACTTCCACCTTGTCTCTATCTATGGATCTGTAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | AGGCTGTGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACTGTCCGAGAGAGCCTTaGAAAGCTGTTGGAAATACA | + |
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Preference number: 4 (lower is better) Translates to: RLWLTRMGVLFYRSIDRDCPREP*KAVGNT Trigger: TGTATTTCCAACAGCTTTCCAAGGCTCTCTCGGACA...GTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCACAGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR TCA 90 bp | AGGCTGTGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACGAGACAGACATAAGTTaGGTTTCCACAGAGGAAGAA | + |
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Preference number: 4 (lower is better) Translates to: RLWLTRMGVLFYRSIDRDETDIS*VSTEEE Trigger: TTCTTCCTCTGTGGAAACTCAACTTATGTCTGTCTC...GTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCACAGCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | CTGTGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGCCCACGAAGGTGGCATaGTTTGAATTCTTGAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: LWLTRMGVLFYRSIDRDKPTKVA*FEFLKK Trigger: CTTCTTCAAGAATTCAAACCATGCCACCTTCGTGGG...CTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | TGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGGTGGCCTTGGAAAGCTGTTaGAAATACACAGTTGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: WLTRMGVLFYRSIDRDKVALESC*KYTVEV Trigger: CACCTCAACTGTGTATTTCCAACAGCTTTCCAAGGC...CACCTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | CTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGGTGGAAGAGTCTATTTGGTCTTaGAGGCTGATGATGGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: LTRMGVLFYRSIDRDKVEESIWS*RLMMEV Trigger: CACCTCCATCATCAGCCTCCAAGACCAAATAGACTC...TTCCACCTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR TCA 90 bp | TTCTACAGATCCATAGATAGAGACAAGGTGGAAGTCGGTTATGGTTCACGAGCTCATGGTTTGAATTCTTaGAGAAGCGGGATATGCAGA | + |
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Preference number: 4 (lower is better) Translates to: FYRSIDRDKVEVGYGSRAHGLNS*RSGICR Trigger: TCTGCATATCCCGCTTCTTCAAGAATTCAAACCATG...AGCTCGTGAACCATAACCGACTTCCACCTTGTCTCTATCTATGGATCTGTAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | TTCTACAGATCCATAGATAGAGACAAGGTGGAAGTCGGTTATGGTTCACGAGCTTTGACAAAAGAGGAGTaGGGAGTCAATGGTTGGAAA | + |
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Preference number: 4 (lower is better) Translates to: FYRSIDRDKVEVGYGSRALTKEE*GVNGWK Trigger: TTTCCAACCATTGACTCCCCACTCCTCTTTTGTCAA...AGCTCGTGAACCATAACCGACTTCCACCTTGTCTCTATCTATGGATCTGTAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | TACAGATCCATAGATAGAGACAAGGTGGAAGTCGGTTATGGTTCACGAGCTCCTATATGGTTTGGTTGTTaGGAAGGAGTTCAATATCCG | + |
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Preference number: 4 (lower is better) Translates to: YRSIDRDKVEVGYGSRAPIWFGC*EGVQYP Trigger: CGGATATTGAACTCCTTCCCAACAACCAAACCATAT...AGGAGCTCGTGAACCATAACCGACTTCCACCTTGTCTCTATCTATGGATCTGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | CTTTTCTACAGATCCATAGATAGAGACAAGGTGGAAGTCGGTTATGGTTCACGAGGGACAGATATGGTTTaGTTGTTGGGAAGGAGTTCA | + |
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Preference number: 4 (lower is better) Translates to: LFYRSIDRDKVEVGYGSRGTDMV*LLGRSS Trigger: TGAACTCCTTCCCAACAACCAAACCATATCTGTCCC...TCGTGAACCATAACCGACTTCCACCTTGTCTCTATCTATGGATCTGTAGAAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CCA 90 bp | CTTTTCTACAGATCCATAGATAGAGACAAGGTGGAAGTCGGTTATGGTTCACGAAAAGCGGGACAGATATaGTTTGGTTGTTGGGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: LFYRSIDRDKVEVGYGSRKAGQI*FGCWEG Trigger: TCCTTCCCAACAACCAAACCATATCTGTCCCGCTTT...TCGTGAACCATAACCGACTTCCACCTTGTCTCTATCTATGGATCTGTAGAAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS TCA 90 bp | CCGAGAGAGCCTTGGAAAGCTGTTGGAAATACACAGTTGAGGTGGTaGTACCCGCGATGCCTAACCCCAGGGCAGAAGCAATGCCCAGGC | + |
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Preference number: 5 (lower is better) Translates to: PREPWKAVGNTQLRW*YPRCLTPGQKQCPG Trigger: GCCTGGGCATTGCTTCTGCCCTGGGGTTAGGCATCGCGGGTATCACCACCTCAACTGTGTATTTCCAACAGCTTTCCAAGGCTCTCTCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CCA 90 bp | GCCCGCTGGTCAGGGTTGACAAAAGAGGAGTGGGGAGTCAATGGTTaGAAATTCTGGAGGCGCCTCTCAAGGTCGGTGATAGGGTATGGG | + |
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Preference number: 5 (lower is better) Translates to: ARWSGLTKEEWGVNG*KFWRRLSRSVIGYG Trigger: CCCATACCCTATCACCGACCTTGAGAGGCGCCTCCAGAATTTCCAACCATTGACTCCCCACTCCTCTTTTGTCAACCCTGACCAGCGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CCA 90 bp | GCATGGTTTGAATTCTTGAAGAAGCGGGATATGCAGAGAGGGGCCTaGGAGGTGAGGATCGTCTGGGTGGAGAGTGAGCCCCATATGGGG | + |
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Preference number: 5 (lower is better) Translates to: AWFEFLKKRDMQRGA*EVRIVWVESEPHMG Trigger: CCCCATATGGGGCTCACTCTCCACCCAGACGATCCTCACCTCCCAGGCCCCTCTCTGCATATCCCGCTTCTTCAAGAATTCAAACCATGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CCA 90 bp | TCAGGGTTGACAAAAGAGGAGTGGGGAGTCAATGGTTGGAAATTCTaGAGGCGCCTCTCAAGGTCGGTGATAGGGTATGGGCCGGAGAGG | + |
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Preference number: 5 (lower is better) Translates to: SGLTKEEWGVNGWKF*RRLSRSVIGYGPER Trigger: CCTCTCCGGCCCATACCCTATCACCGACCTTGAGAGGCGCCTCCAGAATTTCCAACCATTGACTCCCCACTCCTCTTTTGTCAACCCTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS GCA 90 bp | CTATGGATTGGTGGTTGGCAGAGGGGGAGAGCTGAAAGGTGTGATTaGAAAGAGAGGCAGGGAGTTTGCCCACGAAGGTGGCATGGTTTG | + |
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Preference number: 5 (lower is better) Translates to: LWIGGWQRGRAERCD*KERQGVCPRRWHGL Trigger: CAAACCATGCCACCTTCGTGGGCAAACTCCCTGCCTCTCTTTGCAATCACACCTTTCAGCTCTCCCCCTCTGCCAACCACCAATCCATAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CCA 90 bp | AATGGCCCGCTGGTCAGGGTTGACAAAAGAGGAGTGGGGAGTCAATaGTTGGAAATTCTGGAGGCGCCTCTCAAGGTCGGTGATAGGGTA | + |
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Preference number: 5 (lower is better) Translates to: NGPLVRVDKRGVGSQ*LEILEAPLKVGDRV Trigger: TACCCTATCACCGACCTTGAGAGGCGCCTCCAGAATTTCCAACCATTGACTCCCCACTCCTCTTTTGTCAACCCTGACCAGCGGGCCATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS TCA 90 bp | ATTGCAAAGAGAGGCAGGGAGTTTGCCCACGAAGGTGGCATGGTTTaGATTCTTGAAGAAGCGGGATATGCAGAGAGGGGCCTGGGAGGT | + |
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Preference number: 5 (lower is better) Translates to: IAKRGREFAHEGGMV*ILEEAGYAERGLGG Trigger: ACCTCCCAGGCCCCTCTCTGCATATCCCGCTTCTTCAAGAATTCAAACCATGCCACCTTCGTGGGCAAACTCCCTGCCTCTCTTTGCAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CCA 90 bp | ATGGGGCGAATGCATAGCTGGAGGACAGATCTATGGATTGGTGGTTaGCAGAGGGGGAGAGCTGAAAGGTGTGATTGCAAAGAGAGGCAG | + |
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Preference number: 5 (lower is better) Translates to: MGRMHSWRTDLWIGG*QRGRAERCDCKERQ Trigger: CTGCCTCTCTTTGCAATCACACCTTTCAGCTCTCCCCCTCTGCCAACCACCAATCCATAGATCTGTCCTCCAGCTATGCATTCGCCCCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CAA 90 bp | AGATCCATAGATAGAGACAAGGTGGAAGTCGGTTATGGTTCACGAGCTCCTCCCCTCCTGGAGGAGGTGTaGAGTGAGGTTTACCAGGGG | + |
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Preference number: 5 (lower is better) Translates to: RSIDRDKVEVGYGSRAPPLLEEV*SEVYQG Trigger: CCCCTGGTAAACCTCACTCAACACCTCCTCCAGGAG...GGGAGGAGCTCGTGAACCATAACCGACTTCCACCTTGTCTCTATCTATGGATCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CAA 90 bp | AGGCTGTGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACGCCCGCTGGTCAGGGTaGACAAAAGAGGAGTGGGGA | + |
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Preference number: 5 (lower is better) Translates to: RLWLTRMGVLFYRSIDRDARWSG*TKEEWG Trigger: TCCCCACTCCTCTTTTGTCAACCCTGACCAGCGGGC...GTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCACAGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CAA 90 bp | TACAGATCCATAGATAGAGACAAGGTGGAAGTCGGTTATGGTTCACGAGCTCCTCTCCTCCGGGGGCTCTaGGGGAAGTCTCTTGTACTG | + |
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Preference number: 5 (lower is better) Translates to: YRSIDRDKVEVGYGSRAPLLRGL*GKSLVL Trigger: CAGTACAAGAGACTTCCCCAAGAGCCCCCGGAGGAG...AGGAGCTCGTGAACCATAACCGACTTCCACCTTGTCTCTATCTATGGATCTGTA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CAA 90 bp | AGGCTGTGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACGTGGGGAGTCAATGGTaGGAAATTCTGGAGGCGCCT | + |
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Preference number: 5 (lower is better) Translates to: RLWLTRMGVLFYRSIDRDVGSQW*EILEAP Trigger: AGGCGCCTCCAGAATTTCCAACCATTGACTCCCCAC...GTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCACAGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CAA 90 bp | CTTTTCTACAGATCCATAGATAGAGACAAGGTGGAAGTCGGTTATGGTTCACGAGGACAGATCTATGGATaGGTGGTTGGCAGAGGGGGA | + |
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Preference number: 5 (lower is better) Translates to: LFYRSIDRDKVEVGYGSRGQIYG*VVGRGG Trigger: TCCCCCTCTGCCAACCACCAATCCATAGATCTGTCC...TCGTGAACCATAACCGACTTCCACCTTGTCTCTATCTATGGATCTGTAGAAAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CAA 90 bp | AGATCCATAGATAGAGACAAGGTGGAAGTCGGTTATGGTTCACGAGCTCCTCCCCCCTGGAGTTTAATCTaGAAGTATGTGGTGTCCACA | + |
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Preference number: 5 (lower is better) Translates to: RSIDRDKVEVGYGSRAPPPWSLI*KYVVST Trigger: TGTGGACACCACATACTTCAAGATTAAACTCCAGGG...GGGAGGAGCTCGTGAACCATAACCGACTTCCACCTTGTCTCTATCTATGGATCT 48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CAA 90 bp | CTGTGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGCGGGACAGATATGGTTaGGTTGTTGGGAAGGAGTTC | + |
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Preference number: 5 (lower is better) Translates to: LWLTRMGVLFYRSIDRDKRDRYG*VVGKEF Trigger: GAACTCCTTCCCAACAACCAAACCATATCTGTCCCG...CTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CAA 90 bp | TGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGGTGCTGTCCGAGAGAGCCTaGGAAAGCTGTTGGAAATAC | + |
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Preference number: 5 (lower is better) Translates to: WLTRMGVLFYRSIDRDKVLSERA*ESCWKY Trigger: GTATTTCCAACAGCTTTCCAAGGCTCTCTCGGACAG...CACCTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CAA 90 bp | CTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGGTGGAACGAGTCTATTTGGTCTaGGAGGCTGATGATGGAGGT | + |
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Preference number: 5 (lower is better) Translates to: LTRMGVLFYRSIDRDKVERVYLV*EADDGG Trigger: ACCTCCATCATCAGCCTCCAAGACCAAATAGACTCG...TTCCACCTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CAA 90 bp | CTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGGTGGAAAAGCAGACCCAGCAGTaGGAAGAGAAGGAAGAGTTA | + |
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Preference number: 5 (lower is better) Translates to: LTRMGVLFYRSIDRDKVEKQTQQ*EEKEEL Trigger: TAACTCTTCCTTCTCTTCCAACTGCTGGGTCTGCTT...TTCCACCTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CAA 90 bp | CTGTGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGGCATGGTTTGAATTCTaGAAGAAGCGGGATATGCAG | + |
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Preference number: 5 (lower is better) Translates to: LWLTRMGVLFYRSIDRDKAWFEF*KKRDMQ Trigger: CTGCATATCCCGCTTCTTCAAGAATTCAAACCATGC...CTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CAA 90 bp | TACAGATCCATAGATAGAGACAAGGTGGAAGTCGGTTATGGTTCACGAGCTCCTGTTCATATTCCCAGATaGAATATTGTCCAGAGAGGG | + |
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Preference number: 5 (lower is better) Translates to: YRSIDRDKVEVGYGSRAPVHIPR*NIVQRG Trigger: CCCTCTCTGGACAATATTCAATCTGGGAATATGAAC...AGGAGCTCGTGAACCATAACCGACTTCCACCTTGTCTCTATCTATGGATCTGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CAA 90 bp | CTGTGGCTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGGGAGACAGACATAAGTaGAGTTTCCACAGAGGAAGA | + |
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Preference number: 5 (lower is better) Translates to: LWLTRMGVLFYRSIDRDKGDRHK*SFHRGR Trigger: TCTTCCTCTGTGGAAACTCAACTTATGTCTGTCTCC...CTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAGCCACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CAA 90 bp | CTTTTCTACAGATCCATAGATAGAGACAAGGTGGAAGTCGGTTATGGTTCACGAAAAACACCAGAGGAGTaGAGGCAGAAGGAGTATGTT | + |
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Preference number: 5 (lower is better) Translates to: LFYRSIDRDKVEVGYGSRKTPEE*RQKEYV Trigger: AACATACTCCTTCTGCCTCAACTCCTCTGGTGTTTT...TCGTGAACCATAACCGACTTCCACCTTGTCTCTATCTATGGATCTGTAGAAAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS-3UTR CAA 90 bp | CTAACACGGATGGGTGTTCTTTTCTACAGATCCATAGATAGAGACAAGGTGGAAGATATGGTTTGGTTGTaGGGAAGGAGTTCAATATCC | + |
|
Preference number: 5 (lower is better) Translates to: LTRMGVLFYRSIDRDKVEDMVWL*GRSSIS Trigger: GGATATTGAACTCCTTCCCAACAACCAAACCATATC...TTCCACCTTGTCTCTATCTATGGATCTGTAGAAAAGAACACCCATCCGTGTTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CCA 72 bp | AACCAAGAGGGCAGCCAGGGTCCTAGCCCCAGCCACTaGATCCAAGAACTCGAGCTTGTGCCGAGTTCCGAG | + |
|
Preference number: 6 (lower is better) Translates to: NQEGSQGPSPSH*IQELELVPSSE Trigger: CTCGGAACTCGGCACAAGCTCGAGTTCTTGGATCCAGTGGCTGGGGCTAGGACCCTGGCTGCCCTCTTGGTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CCA 72 bp | GAATTCTTGAAGAAGCGGGATATGCAGAGAGGGGCCTaGGAGGTGAGGATCGTCTGGGTGGAGAGTGAGCCC | + |
|
Preference number: 6 (lower is better) Translates to: EFLKKRDMQRGA*EVRIVWVESEP Trigger: GGGCTCACTCTCCACCCAGACGATCCTCACCTCCCAGGCCCCTCTCTGCATATCCCGCTTCTTCAAGAATTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CAA 72 bp | ACGGCATCCTCCTCCGGGGGCTCTTGGGGAAGTCTCTaGTACTGGGACTCTCGAAGCAGAAGGATCTTGTCC | + |
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Preference number: 6 (lower is better) Translates to: TASSSGGSWGSL*YWDSRSRRILS Trigger: GGACAAGATCCTTCTGCTTCGAGAGTCCCAGTACAAGAGACTTCCCCAAGAGCCCCCGGAGGAGGATGCCGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CAA 90 bp | GGCCCGCTGGTCAGGGTTGACAAAAGAGGAGTGGGGAGTCAATGGTaGGAAATTCTGGAGGCGCCTCTCAAGGTCGGTGATAGGGTATGG | + |
|
Preference number: 6 (lower is better) Translates to: GPLVRVDKRGVGSQW*EILEAPLKVGDRVW Trigger: CCATACCCTATCACCGACCTTGAGAGGCGCCTCCAGAATTTCCAACCATTGACTCCCCACTCCTCTTTTGTCAACCCTGACCAGCGGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CCA 72 bp | GTGGGGCTGGCATGGCTAGAGAGCGCTGGGTTTGGATaGATAAGCAGACCCAGCAGTTGGAAGAGAAGGAAG | + |
|
Preference number: 6 (lower is better) Translates to: VGLAWLESAGFG*ISRPSSWKRRK Trigger: CTTCCTTCTCTTCCAACTGCTGGGTCTGCTTATCCATCCAAACCCAGCGCTCTCTAGCCATGCCAGCCCCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CCA 72 bp | GCAATGGCCCGCTGGTCAGGGTTGACAAAAGAGGAGTaGGGAGTCAATGGTTGGAAATTCTGGAGGCGCCTC | + |
|
Preference number: 6 (lower is better) Translates to: AMARWSGLTKEE*GVNGWKFWRRL Trigger: GAGGCGCCTCCAGAATTTCCAACCATTGACTCCCCACTCCTCTTTTGTCAACCCTGACCAGCGGGCCATTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS TCA 72 bp | GAAGAGAAGGAAGAGTTAGCCTCCTGGAGGAGGTGTTaGGTGAGGTTTACCAGGGGCATCCAGCTGTCCGAG | + |
|
Preference number: 6 (lower is better) Translates to: EEKEELASWRRC*VRFTRGIQLSE Trigger: CTCGGACAGCTGGATGCCCCTGGTAAACCTCACTCAACACCTCCTCCAGGAGGCTAACTCTTCCTTCTCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS TCA 72 bp | GGAGTTTGCCCACGAAGGTGGCATGGTTTGAATTCTTaGAGAAGCGGGATATGCAGAGAGGGGCCTGGGAGG | + |
|
Preference number: 6 (lower is better) Translates to: GVCPRRWHGLNS*RSGICREGPGR Trigger: CCTCCCAGGCCCCTCTCTGCATATCCCGCTTCTTCAAGAATTCAAACCATGCCACCTTCGTGGGCAAACTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CCA 72 bp | CAAGTCCTTAGTGGGGCTGGCATGGCTAGAGAGCGCTaGGTTTGGATGGATAAGCAGACCCAGCAGTTGGAA | + |
|
Preference number: 6 (lower is better) Translates to: QVLSGAGMARER*VWMDKQTQQLE Trigger: TTCCAACTGCTGGGTCTGCTTATCCATCCAAACCCAGCGCTCTCTAGCCATGCCAGCCCCACTAAGGACTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CCA 72 bp | TGGGTGTCTCTGTCCAAGTCCTTAGTGGGGCTGGCATaGCTAGAGAGCGCTGGGTTTGGATGGATAAGCAGA | + |
|
Preference number: 6 (lower is better) Translates to: WVSLSKSLVGLA*LESAGFGWISR Trigger: TCTGCTTATCCATCCAAACCCAGCGCTCTCTAGCCATGCCAGCCCCACTAAGGACTTGGACAGAGACACCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CAA 72 bp | GGGAGTTTGCCCACGAAGGTGGCATGGTTTGAATTCTaGAAGAAGCGGGATATGCAGAGAGGGGCCTGGGAG | + |
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Preference number: 6 (lower is better) Translates to: GSLPTKVAWFEF*KKRDMQRGAWE Trigger: CTCCCAGGCCCCTCTCTGCATATCCCGCTTCTTCAAGAATTCAAACCATGCCACCTTCGTGGGCAAACTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CAA 72 bp | TGGGGCGAATGCATAGCTGGAGGACAGATCTATGGATaGGTGGTTGGCAGAGGGGGAGAGCTGAAAGGTGTG | + |
|
Preference number: 6 (lower is better) Translates to: WGECIAGGQIYG*VVGRGGELKGV Trigger: CACACCTTTCAGCTCTCCCCCTCTGCCAACCACCAATCCATAGATCTGTCCTCCAGCTATGCATTCGCCCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CCA 72 bp | CTGGTCAGGGTTGACAAAAGAGGAGTGGGGAGTCAATaGTTGGAAATTCTGGAGGCGCCTCTCAAGGTCGGT | + |
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Preference number: 6 (lower is better) Translates to: LVRVDKRGVGSQ*LEILEAPLKVG Trigger: ACCGACCTTGAGAGGCGCCTCCAGAATTTCCAACCATTGACTCCCCACTCCTCTTTTGTCAACCCTGACCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CCA 72 bp | ACCCTGGCATGGCCATTAATGGGGCGAATGCATAGCTaGAGGACAGATCTATGGATTGGTGGTTGGCAGAGG | + |
|
Preference number: 6 (lower is better) Translates to: TLAWPLMGRMHS*RTDLWIGGWQR Trigger: CCTCTGCCAACCACCAATCCATAGATCTGTCCTCCAGCTATGCATTCGCCCCATTAATGGCCATGCCAGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS TCA 72 bp | GAAAGTATGGGAAGTATGCCTGTCACGCTGGTGATCTaGAGGAAAGCAATGGCCCGCTGGTCAGGGTTGACA | + |
|
Preference number: 6 (lower is better) Translates to: ESMGSMPVTLVI*RKAMARWSGLT Trigger: TGTCAACCCTGACCAGCGGGCCATTGCTTTCCTTCAGATCACCAGCGTGACAGGCATACTTCCCATACTTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CCA 72 bp | TTAATGGGGCGAATGCATAGCTGGAGGACAGATCTATaGATTGGTGGTTGGCAGAGGGGGAGAGCTGAAAGG | + |
|
Preference number: 6 (lower is better) Translates to: LMGRMHSWRTDL*IGGWQRGRAER Trigger: CCTTTCAGCTCTCCCCCTCTGCCAACCACCAATCCATAGATCTGTCCTCCAGCTATGCATTCGCCCCATTAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CAA 90 bp | CTGATGATGGAGGTGGCTATTTCATCTAGGCTGTCCGAGAGAGCCTaGGAAAGCTGTTGGAAATACACAGTTGAGGTGGTGATACCCGCG | + |
|
Preference number: 6 (lower is better) Translates to: LMMEVAISSRLSERA*ESCWKYTVEVVIPA Trigger: CGCGGGTATCACCACCTCAACTGTGTATTTCCAACAGCTTTCCAAGGCTCTCTCGGACAGCCTAGATGAAATAGCCACCTCCATCATCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS TCA 72 bp | GACGCCGGACCAATTGGCCGGGAGACAGACATAAGTTaGGTTTCCACAGAGGAAGAAAACACCAGAGGAGTT | + |
|
Preference number: 6 (lower is better) Translates to: DAGPIGRETDIS*VSTEEENTRGV Trigger: AACTCCTCTGGTGTTTTCTTCCTCTGTGGAAACTCAACTTATGTCTGTCTCCCGGCCAATTGGTCCGGCGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CCA 72 bp | TCAGGGTTGACAAAAGAGGAGTGGGGAGTCAATGGTTaGAAATTCTGGAGGCGCCTCTCAAGGTCGGTGATA | + |
|
Preference number: 6 (lower is better) Translates to: SGLTKEEWGVNG*KFWRRLSRSVI Trigger: TATCACCGACCTTGAGAGGCGCCTCCAGAATTTCCAACCATTGACTCCCCACTCCTCTTTTGTCAACCCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CCA 72 bp | TCATCTAGGCTGTCCGAGAGAGCCTTGGAAAGCTGTTaGAAATACACAGTTGAGGTGGTGATACCCGCGATG | + |
|
Preference number: 6 (lower is better) Translates to: SSRLSERALESC*KYTVEVVIPAM Trigger: CATCGCGGGTATCACCACCTCAACTGTGTATTTCCAACAGCTTTCCAAGGCTCTCTCGGACAGCCTAGATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CAA 72 bp | AGACGCCGGACCAATTGGCCGGGAGACAGACATAAGTaGAGTTTCCACAGAGGAAGAAAACACCAGAGGAGT | + |
|
Preference number: 6 (lower is better) Translates to: RRRTNWPGDRHK*SFHRGRKHQRS Trigger: ACTCCTCTGGTGTTTTCTTCCTCTGTGGAAACTCAACTTATGTCTGTCTCCCGGCCAATTGGTCCGGCGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS TCA 72 bp | GCCGTTTTTCTTAACAGTGGGTTCATATTCCCAGATTaGATATTGTCCAGAGAGGGCTGCCCCCATGAGGGG | + |
|
Preference number: 6 (lower is better) Translates to: AVFLNSGFIFPD*ILSREGCPHEG Trigger: CCCCTCATGGGGGCAGCCCTCTCTGGACAATATTCAATCTGGGAATATGAACCCACTGTTAAGAAAAACGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CCA 72 bp | CAAAGAGAGGCAGGGAGTTTGCCCACGAAGGTGGCATaGTTTGAATTCTTGAAGAAGCGGGATATGCAGAGA | + |
|
Preference number: 6 (lower is better) Translates to: QREAGSLPTKVA*FEFLKKRDMQR Trigger: TCTCTGCATATCCCGCTTCTTCAAGAATTCAAACCATGCCACCTTCGTGGGCAAACTCCCTGCCTCTCTTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CAA 90 bp | GGGGACAGAGGAGGGAACTGTAGCAAAAAGCGGGACAGATATGGTTaGGTTGTTGGGAAGGAGTTCAATATCCGGGTATTGGAAGACAAG | + |
|
Preference number: 6 (lower is better) Translates to: GDRGGNCSKKRDRYG*VVGKEFNIRVLEDK Trigger: CTTGTCTTCCAATACCCGGATATTGAACTCCTTCCCAACAACCAAACCATATCTGTCCCGCTTTTTGCTACAGTTCCCTCCTCTGTCCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CAA 90 bp | ACAGAGGAGGGAACTGTAGCAAAAAGCGGGACAGATATGGTTTGGTaGTTGGGAAGGAGTTCAATATCCGGGTATTGGAAGACAAGGGTA | + |
|
Preference number: 6 (lower is better) Translates to: TEEGTVAKSGTDMVW*LGRSSISGYWKTRV Trigger: TACCCTTGTCTTCCAATACCCGGATATTGAACTCCTTCCCAACAACCAAACCATATCTGTCCCGCTTTTTGCTACAGTTCCCTCCTCTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS TCA 72 bp | TTGAGTTTCCACAGAGGAAGAAAACACCAGAGGAGTTaGGGCAGAAGGAGTATGTTAAGGAGACAAGGTGGG | + |
|
Preference number: 6 (lower is better) Translates to: LSFHRGRKHQRS*GRRSMLRRQGG Trigger: CCCACCTTGTCTCCTTAACATACTCCTTCTGCCTCAACTCCTCTGGTGTTTTCTTCCTCTGTGGAAACTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CCA 72 bp | GAGGGAACTGTAGCAAAAAGCGGGACAGATATGGTTTaGTTGTTGGGAAGGAGTTCAATATCCGGGTATTGG | + |
|
Preference number: 6 (lower is better) Translates to: EGTVAKSGTDMV*LLGRSSISGYW Trigger: CCAATACCCGGATATTGAACTCCTTCCCAACAACCAAACCATATCTGTCCCGCTTTTTGCTACAGTTCCCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CAA 72 bp | GTTGAGTTTCCACAGAGGAAGAAAACACCAGAGGAGTaGAGGCAGAAGGAGTATGTTAAGGAGACAAGGTGG | + |
|
Preference number: 6 (lower is better) Translates to: VEFPQRKKTPEE*RQKEYVKETRW Trigger: CCACCTTGTCTCCTTAACATACTCCTTCTGCCTCAACTCCTCTGGTGTTTTCTTCCTCTGTGGAAACTCAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CAA 72 bp | GGAGGGAACTGTAGCAAAAAGCGGGACAGATATGGTTaGGTTGTTGGGAAGGAGTTCAATATCCGGGTATTG | + |
|
Preference number: 6 (lower is better) Translates to: GGNCSKKRDRYG*VVGKEFNIRVL Trigger: CAATACCCGGATATTGAACTCCTTCCCAACAACCAAACCATATCTGTCCCGCTTTTTGCTACAGTTCCCTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CCA 72 bp | GAGTTGAGGCAGAAGGAGTATGTTAAGGAGACAAGGTaGGAGAAGATATTTGGAGTGATACCGCCGTTTTTC | + |
|
Preference number: 6 (lower is better) Translates to: ELRQKEYVKETR*EKIFGVIPPFF Trigger: GAAAAACGGCGGTATCACTCCAAATATCTTCTCCCACCTTGTCTCCTTAACATACTCCTTCTGCCTCAACTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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| CDS CAA 72 bp | GGAACTGTAGCAAAAAGCGGGACAGATATGGTTTGGTaGTTGGGAAGGAGTTCAATATCCGGGTATTGGAAG | + |
|
Preference number: 6 (lower is better) Translates to: GTVAKSGTDMVW*LGRSSISGYWK Trigger: CTTCCAATACCCGGATATTGAACTCCTTCCCAACAACCAAACCATATCTGTCCCGCTTTTTGCTACAGTTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000149604.5 |
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