RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SYDE2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036863

Ensembl transcript IDs: ENSMUST00000039517.11, ENSMUST00000200546.2, ENSMUST00000212479.2

Found 275 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGCACAGGGACTCTGACTGCAAATCAGTCCAGCTGCAGTGTCCTCTaGAGAGAACATCCGTCTCCACGTACAGAAGAACATTCTCGCCGA +
Preference number: 1 (lower is better)
Translates to: CTGTLTANQSSCSVL*REHPSPRTEEHSRR
Trigger: TCGGCGAGAATGTTCTTCTGTACGTGGAGACGGATGTTCTCTGCAGAGGACACTGCAGCTGGACTGATTTGCAGTCAGAGTCCCTGTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
3UTR TCA 90 bp GTAGCATTCTGGCAAGATGACTTCCTTAGAAACAAGGGCAGTTACTaGAGTCAGCATGTTAAGGATACCTCTATAAATAAATACTTAGAG +
Preference number: 1 (lower is better)
Translates to: VAFWQDDFLRNKGSY*SQHVKDTSINKYLE
Trigger: CTCTAAGTATTTATTTATAGAGGTATCCTTAACATGCTGACTTCAGTAACTGCCCTTGTTTCTAAGGAAGTCATCTTGCCAGAATGCTAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
3UTR-3UTR GCA 90 bp CCTTGTCGGGATAATAATGTACCCGACCCTTACAAACATCTGCATGTCTCCTCCGTCTGGTTACCTTTATaGCCAGAACAGCTCAGTTCA +
Preference number: 2 (lower is better)
Translates to: PCRDNNVPDPYKHLHVSSVWLPL*PEQLSS
Trigger: TGAACTGAGCTGTTCTGGGCATAAAGGTAACCAGAC...GGAGGAGACATGCAGATGTTTGTAAGGGTCGGGTACATTATTATCCCGACAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
3UTR-3UTR TCA 90 bp AACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAACAGAAAGGCAATTGCTATTGCACAGGGACTCTaGCTGCAAATCAGTCCAGCT +
Preference number: 2 (lower is better)
Translates to: NFPQGRLCLQSKNRKAIAIAQGL*LQISPA
Trigger: AGCTGGACTGATTTGCAGTCAGAGTCCCTGTGCAAT...AGCAATTGCCTTTCTGTTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
3UTR-3UTR GCA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAAAGCTGCAGTGTCCTCTaGAGAGAACATCCGTCTCCA +
Preference number: 2 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKSCSVL*REHPSP
Trigger: TGGAGACGGATGTTCTCTGCAGAGGACACTGCAGCT...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
3UTR-3UTR GCA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAACACAGGGACTCTGACTaGAAATCAGTCCAGCTGCAG +
Preference number: 2 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKHRDSD*KSVQLQ
Trigger: CTGCAGCTGGACTGATTTGCAGTCAGAGTCCCTGTG...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
3UTR-3UTR GCA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGGTCTGGTTACCTTTATaGCCAGAACAGCTCAGTTCA +
Preference number: 2 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKVWLPL*PEQLSS
Trigger: TGAACTGAGCTGTTCTGGGCATAAAGGTAACCAGAC...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
3UTR-3UTR GCA 90 bp AACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAACAGAAAGGCAATTGCTTTAAAATATTTGGAATaGTGTAACCAACCCCTTCCC +
Preference number: 2 (lower is better)
Translates to: NFPQGRLCLQSKNRKAIALKYLE*CNQPLP
Trigger: GGGAAGGGGTTGGTTACAGCATTCCAAATATTTTAA...AGCAATTGCCTTTCTGTTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
3UTR-3UTR CCA 90 bp CTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAATCTCCTCCATACAACTaGCAAGGTTTATTAAACTAT +
Preference number: 2 (lower is better)
Translates to: LQHKIQLSTGETVSTKQKSPPYN*QGLLNY
Trigger: ATAGTTTAATAAACCTTGCCAGTTGTATGGAGGAGA...TTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
3UTR GCA 72 bp CATTGCACAGGGACTCTGACTGCAAATCAGTCCAGCTaGAGTGTCCTCTGCAGAGAACATCCGTCTCCACGT +
Preference number: 3 (lower is better)
Translates to: HCTGTLTANQSS*SVLCREHPSPR
Trigger: ACGTGGAGACGGATGTTCTCTGCAGAGGACACTGCAGCTGGACTGATTTGCAGTCAGAGTCCCTGTGCAATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
3UTR CCA 72 bp CAACTGGCAAGGTTTATTAAACTATCCCCCAAGGTCTaGTTACCTTTATGCCCAGAACAGCTCAGTTCACAA +
Preference number: 3 (lower is better)
Translates to: QLARFIKLSPKV*LPLCPEQLSSQ
Trigger: TTGTGAACTGAGCTGTTCTGGGCATAAAGGTAACCAGACCTTGGGGGATAGTTTAATAAACCTTGCCAGTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
3UTR CCA 72 bp ACCCTTACAAACATCTGCATGTCTCCTCCATACAACTaGCAAGGTTTATTAAACTATCCCCCAAGGTCTGGT +
Preference number: 3 (lower is better)
Translates to: TLTNICMSPPYN*QGLLNYPPRSG
Trigger: ACCAGACCTTGGGGGATAGTTTAATAAACCTTGCCAGTTGTATGGAGGAGACATGCAGATGTTTGTAAGGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
3UTR-3UTR CAA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGTATGACCAAATGACATaGCACAGGGACTCTGACTGC +
Preference number: 3 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKYDQMT*HRDSDC
Trigger: GCAGTCAGAGTCCCTGTGCAATGTCATTTGGTCATA...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
3UTR-3UTR CAA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAATATGACCAAATGACATaGCACAGGGACTCTGACTGC +
Preference number: 3 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKYDQMT*HRDSDC
Trigger: GCAGTCAGAGTCCCTGTGCAATGTCATTTGGTCATA...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
3UTR TCA 72 bp AAACAAAAAGCACGGGTACTTTCTCTAGAAAACATTTaGAATGTTAACCCATGGTGTACACCTGCATCACCT +
Preference number: 3 (lower is better)
Translates to: KQKARVLSLENI*NVNPWCTPASP
Trigger: AGGTGATGCAGGTGTACACCATGGGTTAACATTTCAAATGTTTTCTAGAGAAAGTACCCGTGCTTTTTGTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
3UTR TCA 72 bp TGGCAAGATGACTTCCTTAGAAACAAGGGCAGTTACTaGAGTCAGCATGTTAAGGATACCTCTATAAATAAA +
Preference number: 3 (lower is better)
Translates to: WQDDFLRNKGSY*SQHVKDTSINK
Trigger: TTTATTTATAGAGGTATCCTTAACATGCTGACTTCAGTAACTGCCCTTGTTTCTAAGGAAGTCATCTTGCCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp CAGCTGCAGTGTCCTCTGCAGAGAACATCCGTCTCCACGTACAGAAGAACATTCAGAGCGGCGGCCTCCTaGGCCCCGCGAGACCATGGC +
Preference number: 4 (lower is better)
Translates to: QLQCPLQRTSVSTYRRTFRAAAS*APRDHG
Trigger: GCCATGGTCTCGCGGGGCGCAGGAGGCCGCCGCTCT...GAATGTTCTTCTGTACGTGGAGACGGATGTTCTCTGCAGAGGACACTGCAGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS-3UTR CCA 90 bp CCTTGTCGGGATAATAATGTACCCGACCCTTACAAACATCTGCATGTCTCCTCCGACGTAGCAGCCCTGTaGCTGCCCGGGCTCCAGCCG +
Preference number: 4 (lower is better)
Translates to: PCRDNNVPDPYKHLHVSSDVAAL*LPGLQP
Trigger: CGGCTGGAGCCCGGGCAGCCACAGGGCTGCTACGTC...GGAGGAGACATGCAGATGTTTGTAAGGGTCGGGTACATTATTATCCCGACAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CAGCTGCAGTGTCCTCTGCAGAGAACATCCGTCTCCACGTACAGAAGAACATTCGACCCGCTGGGGTCATaGCAGATGGGAGGCAGGAGA +
Preference number: 4 (lower is better)
Translates to: QLQCPLQRTSVSTYRRTFDPLGS*QMGGRR
Trigger: TCTCCTGCCTCCCATCTGCCATGACCCCAGCGGGTC...GAATGTTCTTCTGTACGTGGAGACGGATGTTCTCTGCAGAGGACACTGCAGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTGTCCGCCCCGCCGCGTaGCCGAGTCAGGGGGTAGGT +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSVRPAA*PSQGVG
Trigger: ACCTACCCCCTGACTCGGGCACGCGGCGGGGCGGAC...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS-3UTR GCA 90 bp CAGCTGCAGTGTCCTCTGCAGAGAACATCCGTCTCCACGTACAGAAGAACATTCGCTGCTCCAGTCTCCTaGATAGCGGTTGCTGAGTGG +
Preference number: 4 (lower is better)
Translates to: QLQCPLQRTSVSTYRRTFAAPVS*IAVAEW
Trigger: CCACTCAGCAACCGCTATGCAGGAGACTGGAGCAGC...GAATGTTCTTCTGTACGTGGAGACGGATGTTCTCTGCAGAGGACACTGCAGCTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp AACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAACAGAAAGGCAATTGCTCCACCTCCACGTGGCTaGGGCTCGTCCCTGTCCCGG +
Preference number: 4 (lower is better)
Translates to: NFPQGRLCLQSKNRKAIAPPPRG*GSSLSR
Trigger: CCGGGACAGGGACGAGCCCCAGCCACGTGGAGGTGG...AGCAATTGCCTTTCTGTTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS-3UTR CCA 90 bp AACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAACAGAAAGGCAATTGCTGACGTAGCAGCCCTGTaGCTGCCCGGGCTCCAGCCG +
Preference number: 4 (lower is better)
Translates to: NFPQGRLCLQSKNRKAIADVAAL*LPGLQP
Trigger: CGGCTGGAGCCCGGGCAGCCACAGGGCTGCTACGTC...AGCAATTGCCTTTCTGTTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGGGTGCGCACCGCACCTaGTGCAGCTGTCGCTCGCCC +
Preference number: 4 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKGAHRT*CSCRSP
Trigger: GGGCGAGCGACAGCTGCATCAGGTGCGGTGCGCACC...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS-3UTR GCA 90 bp AACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAACAGAAAGGCAATTGCTTCGTCCCTGTCCCGGTaGGCACCGCACCTGATGCAG +
Preference number: 4 (lower is better)
Translates to: NFPQGRLCLQSKNRKAIASSLSR*APHLMQ
Trigger: CTGCATCAGGTGCGGTGCGCACCGGGACAGGGACGA...AGCAATTGCCTTTCTGTTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS-3UTR GCA 90 bp CCTTGTCGGGATAATAATGTACCCGACCCTTACAAACATCTGCATGTCTCCTCCGCTGCTCCAGTCTCCTaGATAGCGGTTGCTGAGTGG +
Preference number: 4 (lower is better)
Translates to: PCRDNNVPDPYKHLHVSSAAPVS*IAVAEW
Trigger: CCACTCAGCAACCGCTATGCAGGAGACTGGAGCAGC...GGAGGAGACATGCAGATGTTTGTAAGGGTCGGGTACATTATTATCCCGACAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CAGCTGCAGTGTCCTCTGCAGAGAACATCCGTCTCCACGTACAGAAGAACATTCGGGGTAGGTCGTGCATaGCCTGGATCAGCAGATAAT +
Preference number: 4 (lower is better)
Translates to: QLQCPLQRTSVSTYRRTFGVGRA*PGSADN
Trigger: ATTATCTGCTGATCCAGGCCATGCACGACCTACCCC...GAATGTTCTTCTGTACGTGGAGACGGATGTTCTCTGCAGAGGACACTGCAGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS-3UTR CCA 90 bp CCTTGTCGGGATAATAATGTACCCGACCCTTACAAACATCTGCATGTCTCCTCCGACAGTCACCGCAGGTaGCTTGAGGGGAAGATCCTC +
Preference number: 4 (lower is better)
Translates to: PCRDNNVPDPYKHLHVSSDSHRR*LEGKIL
Trigger: GAGGATCTTCCCCTCAAGCCACCTGCGGTGACTGTC...GGAGGAGACATGCAGATGTTTGTAAGGGTCGGGTACATTATTATCCCGACAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp CCTTGTCGGGATAATAATGTACCCGACCCTTACAAACATCTGCATGTCTCCTCCGACCTCAGGGTGCTCTaGTACAGCCAATTGCGCTTC +
Preference number: 4 (lower is better)
Translates to: PCRDNNVPDPYKHLHVSSDLRVL*YSQLRF
Trigger: GAAGCGCAATTGGCTGTATCAGAGCACCCTGAGGTC...GGAGGAGACATGCAGATGTTTGTAAGGGTCGGGTACATTATTATCCCGACAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp AACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAACAGAAAGGCAATTGCTCCAGGAGGTCCACAGTaGGCCTGGAGTCACTGGGCT +
Preference number: 4 (lower is better)
Translates to: NFPQGRLCLQSKNRKAIAPGGPQ*AWSHWA
Trigger: AGCCCAGTGACTCCAGGCTCACTGTGGACCTCCTGG...AGCAATTGCCTTTCTGTTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAAACTGGGTCTGCAGCCTaGCCGTCTCCAGGCGGCCGC +
Preference number: 4 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKTGSAA*PSPGGR
Trigger: GCGGCCGCCTGGAGACGGGCAGGCTGCAGACCCAGT...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS-3UTR CCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTCATCCCACCTCCACGTaGCTGGGGCTCGTCCCTGTC +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSHPTST*LGLVPV
Trigger: GACAGGGACGAGCCCCAGCCACGTGGAGGTGGGATG...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS-3UTR CCA 90 bp CCTTGTCGGGATAATAATGTACCCGACCCTTACAAACATCTGCATGTCTCCTCCGCCGAGAGGATACGGTaGTATCAAGATGGTACCGGC +
Preference number: 4 (lower is better)
Translates to: PCRDNNVPDPYKHLHVSSAERIR*YQDGTG
Trigger: GCCGGTACCATCTTGATACCACCGTATCCTCTCGGC...GGAGGAGACATGCAGATGTTTGTAAGGGTCGGGTACATTATTATCCCGACAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CAGCTGCAGTGTCCTCTGCAGAGAACATCCGTCTCCACGTACAGAAGAACATTCGAAGCCTCTTGCCTCTaGTTAAGCAACACTGGTCCA +
Preference number: 4 (lower is better)
Translates to: QLQCPLQRTSVSTYRRTFEASCL*LSNTGP
Trigger: TGGACCAGTGTTGCTTAACCAGAGGCAAGAGGCTTC...GAATGTTCTTCTGTACGTGGAGACGGATGTTCTCTGCAGAGGACACTGCAGCTG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGTGGGGTCATGGCAGATaGGAGGCAGGAGAGCGGCGG +
Preference number: 4 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKWGHGR*EAGERR
Trigger: CCGCCGCTCTCCTGCCTCCCATCTGCCATGACCCCA...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTGACCCGCTGGGGTCATaGCAGATGGGAGGCAGGAGA +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSDPLGS*QMGGRR
Trigger: TCTCCTGCCTCCCATCTGCCATGACCCCAGCGGGTC...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CAGCTGCAGTGTCCTCTGCAGAGAACATCCGTCTCCACGTACAGAAGAACATTCCTGGTTAAGCAACACTaGTCCAAAGCACACAGCCAA +
Preference number: 4 (lower is better)
Translates to: QLQCPLQRTSVSTYRRTFLVKQH*SKAHSQ
Trigger: TTGGCTGTGTGCTTTGGACCAGTGTTGCTTAACCAG...GAATGTTCTTCTGTACGTGGAGACGGATGTTCTCTGCAGAGGACACTGCAGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CAGCTGCAGTGTCCTCTGCAGAGAACATCCGTCTCCACGTACAGAAGAACATTCAAGACTCTGTTGTTGTaGGTTGAAGCCTCTTGCCTC +
Preference number: 4 (lower is better)
Translates to: QLQCPLQRTSVSTYRRTFKTLLL*VEASCL
Trigger: GAGGCAAGAGGCTTCAACCCACAACAACAGAGTCTT...GAATGTTCTTCTGTACGTGGAGACGGATGTTCTCTGCAGAGGACACTGCAGCTG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CAGCTGCAGTGTCCTCTGCAGAGAACATCCGTCTCCACGTACAGAAGAACATTCCTTTCTGATCCACCGTaGATTCAATGGTCTGTACCG +
Preference number: 4 (lower is better)
Translates to: QLQCPLQRTSVSTYRRTFLSDPP*IQWSVP
Trigger: CGGTACAGACCATTGAATCCACGGTGGATCAGAAAG...GAATGTTCTTCTGTACGTGGAGACGGATGTTCTCTGCAGAGGACACTGCAGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp GCAAGGTTTATTAAACTATCCCCCAAGGTCTGGTTACCTTTATGCCCAGAACAGGACCTCAGGGTGCTCTaGTACAGCCAATTGCGCTTC +
Preference number: 4 (lower is better)
Translates to: ARFIKLSPKVWLPLCPEQDLRVL*YSQLRF
Trigger: GAAGCGCAATTGGCTGTATCAGAGCACCCTGAGGTC...CTGTTCTGGGCATAAAGGTAACCAGACCTTGGGGGATAGTTTAATAAACCTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp AACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAACAGAAAGGCAATTGCTCAGGGCGGCGGTGTTTaGCTCCTCAAGACTCAAGAC +
Preference number: 4 (lower is better)
Translates to: NFPQGRLCLQSKNRKAIAQGGGV*LLKTQD
Trigger: GTCTTGAGTCTTGAGGAGGCAAACACCGCCGCCCTG...AGCAATTGCCTTTCTGTTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp CAGCTGCAGTGTCCTCTGCAGAGAACATCCGTCTCCACGTACAGAAGAACATTCCTTTCTTGTGTCCTGTaGCCTAACCTTTGTTTGCAG +
Preference number: 4 (lower is better)
Translates to: QLQCPLQRTSVSTYRRTFLSCVL*PNLCLQ
Trigger: CTGCAAACAAAGGTTAGGGCACAGGACACAAGAAAG...GAATGTTCTTCTGTACGTGGAGACGGATGTTCTCTGCAGAGGACACTGCAGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp GCAAGGTTTATTAAACTATCCCCCAAGGTCTGGTTACCTTTATGCCCAGAACAGCCCCCAGCTTTCGGCTaGATTCTGGCAACCTTTTCA +
Preference number: 4 (lower is better)
Translates to: ARFIKLSPKVWLPLCPEQPPAFG*ILATFS
Trigger: TGAAAAGGTTGCCAGAATTCAGCCGAAAGCTGGGGG...CTGTTCTGGGCATAAAGGTAACCAGACCTTGGGGGATAGTTTAATAAACCTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp GCAAGGTTTATTAAACTATCCCCCAAGGTCTGGTTACCTTTATGCCCAGAACAGTCCCGGAAGTCAGAGTaGCACCCTGAGGAATTTCTC +
Preference number: 4 (lower is better)
Translates to: ARFIKLSPKVWLPLCPEQSRKSE*HPEEFL
Trigger: GAGAAATTCCTCAGGGTGTCACTCTGACTTCCGGGA...CTGTTCTGGGCATAAAGGTAACCAGACCTTGGGGGATAGTTTAATAAACCTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTCTCTGGGCTCCAGCTTaGCAGCCAGCTGATGCGTTT +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSLWAPA*QPADAF
Trigger: AAACGCATCAGCTGGCTGTCAAGCTGGAGCCCAGAG...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp CTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAACCAGGAGGTCCACAGTaGGCCTGGAGTCACTGGGCT +
Preference number: 4 (lower is better)
Translates to: LQHKIQLSTGETVSTKQKPGGPQ*AWSHWA
Trigger: AGCCCAGTGACTCCAGGCTCACTGTGGACCTCCTGG...TTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp CCTTGTCGGGATAATAATGTACCCGACCCTTACAAACATCTGCATGTCTCCTCCGCCACCAGTTTCAGATaGTCCAACAACATCTTCAGG +
Preference number: 4 (lower is better)
Translates to: PCRDNNVPDPYKHLHVSSATSFR*SNNIFR
Trigger: CCTGAAGATGTTGTTGGATCATCTGAAACTGGTGGC...GGAGGAGACATGCAGATGTTTGTAAGGGTCGGGTACATTATTATCCCGACAAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAATCTCGCAACTGGGTCTaGAGCCTGCCCGTCTCCAGG +
Preference number: 4 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKSRNWV*SLPVSR
Trigger: CCTGGAGACGGGCAGGCTGCAGACCCAGTTGCGAGA...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS-3UTR GCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTTCAGGGGGTAGGTCGTaGATGGCCTGGATCAGCAGA +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSSGGRS*MAWISR
Trigger: TCTGCTGATCCAGGCCATGCACGACCTACCCCCTGA...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS-3UTR GCA 90 bp GCAAGGTTTATTAAACTATCCCCCAAGGTCTGGTTACCTTTATGCCCAGAACAGTTTGGAGAGGTTGTCTaGGCTCCGGGAACTTTGGGT +
Preference number: 4 (lower is better)
Translates to: ARFIKLSPKVWLPLCPEQFGEVV*APGTLG
Trigger: ACCCAAAGTTCCCGGAGCGCAGACAACCTCTCCAAA...CTGTTCTGGGCATAAAGGTAACCAGACCTTGGGGGATAGTTTAATAAACCTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp CAGCTGCAGTGTCCTCTGCAGAGAACATCCGTCTCCACGTACAGAAGAACATTCACCAGCTTCAGATGCTaGGCATTTTCAATCTCTATG +
Preference number: 4 (lower is better)
Translates to: QLQCPLQRTSVSTYRRTFTSFRC*AFSISM
Trigger: CATAGAGATTGAAAATGCGCAGCATCTGAAGCTGGT...GAATGTTCTTCTGTACGTGGAGACGGATGTTCTCTGCAGAGGACACTGCAGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTAGCTCTCCCCACAGCTaGTCCAGTCTCCTGCATAGC +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSSSPHS*SSLLHS
Trigger: GCTATGCAGGAGACTGGAGCAGCTGTGGGGAGAGCT...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp CAGCTGCAGTGTCCTCTGCAGAGAACATCCGTCTCCACGTACAGAAGAACATTCGCTCACGTTCCAGATTaGCAATCAAAGTATCAATGC +
Preference number: 4 (lower is better)
Translates to: QLQCPLQRTSVSTYRRTFAHVPD*QSKYQC
Trigger: GCATTGATACTTTGATTGGCAATCTGGAACGTGAGC...GAATGTTCTTCTGTACGTGGAGACGGATGTTCTCTGCAGAGGACACTGCAGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CCTTGTCGGGATAATAATGTACCCGACCCTTACAAACATCTGCATGTCTCCTCCCCTTCATCAGATCTCTaGCAGACAACATGCTCACAG +
Preference number: 4 (lower is better)
Translates to: PCRDNNVPDPYKHLHVSSPSSDL*QTTCSQ
Trigger: CTGTGAGCATGTTGTCTGCCAGAGATCTGATGAAGG...GGAGGAGACATGCAGATGTTTGTAAGGGTCGGGTACATTATTATCCCGACAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CCTTGTCGGGATAATAATGTACCCGACCCTTACAAACATCTGCATGTCTCCTCCCTGGTTAAGCAACACTaGTCCAAAGCACACAGCCAA +
Preference number: 4 (lower is better)
Translates to: PCRDNNVPDPYKHLHVSSLVKQH*SKAHSQ
Trigger: TTGGCTGTGTGCTTTGGACCAGTGTTGCTTAACCAG...GGAGGAGACATGCAGATGTTTGTAAGGGTCGGGTACATTATTATCCCGACAAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp GCAAGGTTTATTAAACTATCCCCCAAGGTCTGGTTACCTTTATGCCCAGAACAGTCTGTTGTTGTGGGTTaGAGCCTCTTGCCTCTGGTT +
Preference number: 4 (lower is better)
Translates to: ARFIKLSPKVWLPLCPEQSVVVG*SLLPLV
Trigger: AACCAGAGGCAAGAGGCTTCAACCCACAACAACAGA...CTGTTCTGGGCATAAAGGTAACCAGACCTTGGGGGATAGTTTAATAAACCTTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp CCTTGTCGGGATAATAATGTACCCGACCCTTACAAACATCTGCATGTCTCCTCCTCAGCTTGTTTTTGTTaGGCTCACGTTCCAGATTGC +
Preference number: 4 (lower is better)
Translates to: PCRDNNVPDPYKHLHVSSSACFC*AHVPDC
Trigger: GCAATCTGGAACGTGAGCTCAACAAAAACAAGCTGA...GGAGGAGACATGCAGATGTTTGTAAGGGTCGGGTACATTATTATCCCGACAAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGCAGGGCGGCGGTGTTTaGCTCCTCAAGACTCAAGAC +
Preference number: 4 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKQGGGV*LLKTQD
Trigger: GTCTTGAGTCTTGAGGAGGCAAACACCGCCGCCCTG...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp AACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAACAGAAAGGCAATTGCTCTCTGGCAGACAACATaGTCACAGGAAGCTTCAGGG +
Preference number: 4 (lower is better)
Translates to: NFPQGRLCLQSKNRKAIALWQTT*SQEASG
Trigger: CCCTGAAGCTTCCTGTGAGCATGTTGTCTGCCAGAG...AGCAATTGCCTTTCTGTTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp CCTTGTCGGGATAATAATGTACCCGACCCTTACAAACATCTGCATGTCTCCTCCCTTTCTTGTGTCCTGTaGCCTAACCTTTGTTTGCAG +
Preference number: 4 (lower is better)
Translates to: PCRDNNVPDPYKHLHVSSLSCVL*PNLCLQ
Trigger: CTGCAAACAAAGGTTAGGGCACAGGACACAAGAAAG...GGAGGAGACATGCAGATGTTTGTAAGGGTCGGGTACATTATTATCCCGACAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGAGCTCTCCCCACAGCTaGTCCAGTCTCCTGCATAGC +
Preference number: 4 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKSSPHS*SSLLHS
Trigger: GCTATGCAGGAGACTGGAGCAGCTGTGGGGAGAGCT...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp CAGCTGCAGTGTCCTCTGCAGAGAACATCCGTCTCCACGTACAGAAGAACATTCGTATCAATGCTCTCTTaGAAATCTCTGAGGTTAGCT +
Preference number: 4 (lower is better)
Translates to: QLQCPLQRTSVSTYRRTFVSMLS*KSLRLA
Trigger: AGCTAACCTCAGAGATTTGCAAGAGAGCATTGATAC...GAATGTTCTTCTGTACGTGGAGACGGATGTTCTCTGCAGAGGACACTGCAGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGGACAGTCACCGCAGGTaGCTTGAGGGGAAGATCCTC +
Preference number: 4 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKDSHRR*LEGKIL
Trigger: GAGGATCTTCCCCTCAAGCCACCTGCGGTGACTGTC...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CAGCTGCAGTGTCCTCTGCAGAGAACATCCGTCTCCACGTACAGAAGAACATTCTTTCCTCACAGTGCGTaGAGACTTTATTTTATCTGG +
Preference number: 4 (lower is better)
Translates to: QLQCPLQRTSVSTYRRTFFPHSA*RLYFIW
Trigger: CCAGATAAAATAAAGTCTCCACGCACTGTGAGGAAA...GAATGTTCTTCTGTACGTGGAGACGGATGTTCTCTGCAGAGGACACTGCAGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CCTTGTCGGGATAATAATGTACCCGACCCTTACAAACATCTGCATGTCTCCTCCCGTTCTCACAACCACTaGACGACATTTTCAAAGGAC +
Preference number: 4 (lower is better)
Translates to: PCRDNNVPDPYKHLHVSSRSHNH*TTFSKD
Trigger: GTCCTTTGAAAATGTCGTCCAGTGGTTGTGAGAACG...GGAGGAGACATGCAGATGTTTGTAAGGGTCGGGTACATTATTATCCCGACAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACTTCTGCAGTTTCTTaGCAGTCACCGCAGGTGGCT +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSTSAVS*QSPQVA
Trigger: AGCCACCTGCGGTGACTGTCAAGAAACTGCAGAAGT...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTCCCCCAGCTTTCGGCTaGATTCTGGCAACCTTTTCA +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSPPAFG*ILATFS
Trigger: TGAAAAGGTTGCCAGAATTCAGCCGAAAGCTGGGGG...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp CTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAACTCTGGGCTCCAGCTTaGCAGCCAGCTGATGCGTTT +
Preference number: 4 (lower is better)
Translates to: LQHKIQLSTGETVSTKQKLWAPA*QPADAF
Trigger: AAACGCATCAGCTGGCTGTCAAGCTGGAGCCCAGAG...TTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGCTGCATAGCGGTTGCTaGGTGGACTGTCTAATCGGG +
Preference number: 4 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKLHSGC*VDCLIG
Trigger: CCCGATTAGACAGTCCACTCAGCAACCGCTATGCAG...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp CCTTGTCGGGATAATAATGTACCCGACCCTTACAAACATCTGCATGTCTCCTCCCATTTTTGCTACAACTaGTTGGGACAGTTTCTCTCC +
Preference number: 4 (lower is better)
Translates to: PCRDNNVPDPYKHLHVSSHFCYN*LGQFLS
Trigger: GGAGAGAAACTGTCCCAAGCAGTTGTAGCAAAAATG...GGAGGAGACATGCAGATGTTTGTAAGGGTCGGGTACATTATTATCCCGACAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGGGTCCTCTTGGCTGCTaGATATCACAGAGGTCCCCA +
Preference number: 4 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKGPLGC*ISQRSP
Trigger: TGGGGACCTCTGTGATATCCAGCAGCCAAGAGGACC...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTTACCCAATGCTTGGGTaGAGACACAGGAGAGAGGGA +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSYPMLG*RHRREG
Trigger: TCCCTCTCTCCTGTGTCTCCACCCAAGCATTGGGTA...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp GCAAGGTTTATTAAACTATCCCCCAAGGTCTGGTTACCTTTATGCCCAGAACAGACGGTGGTATCAAGATaGTACCGGCTTATCACGTTC +
Preference number: 4 (lower is better)
Translates to: ARFIKLSPKVWLPLCPEQTVVSR*YRLITF
Trigger: GAACGTGATAAGCCGGTACCATCTTGATACCACCGT...CTGTTCTGGGCATAAAGGTAACCAGACCTTGGGGGATAGTTTAATAAACCTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp CCTTGTCGGGATAATAATGTACCCGACCCTTACAAACATCTGCATGTCTCCTCCCCAATTGCGCTTCTTTaGAACTGTGATGTTGTTAAG +
Preference number: 4 (lower is better)
Translates to: PCRDNNVPDPYKHLHVSSPIALL*NCDVVK
Trigger: CTTAACAACATCACAGTTTCAAAGAAGCGCAATTGG...GGAGGAGACATGCAGATGTTTGTAAGGGTCGGGTACATTATTATCCCGACAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGAGAAGTGTACGCTCATaGGGCCGGATATGTACTGCG +
Preference number: 4 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKRSVRS*GRICTA
Trigger: CGCAGTACATATCCGGCCTCATGAGCGTACACTTCT...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTTCAAGACGTGTGCTATaGCCAAGCTGTCATCCTCAG +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSSRRVL*PSCHPQ
Trigger: CTGAGGATGACAGCTTGGGCATAGCACACGTCTTGA...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp AACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAACAGAAAGGCAATTGCTCCTTTCCCAAGTTTGTaGTCCGATCCATGCTTGCTA +
Preference number: 4 (lower is better)
Translates to: NFPQGRLCLQSKNRKAIAPFPSL*SDPCLL
Trigger: TAGCAAGCATGGATCGGAGCACAAACTTGGGAAAGG...AGCAATTGCCTTTCTGTTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAAGGTCCTCTTGGCTGCTaGATATCACAGAGGTCCCCA +
Preference number: 4 (lower is better)
Translates to: LQHKIQLSTGETVSTKQKGPLGC*ISQRSP
Trigger: TGGGGACCTCTGTGATATCCAGCAGCCAAGAGGACC...TTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp AACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAACAGAAAGGCAATTGCTAAGACTCTGTTGTTGTaGGTTGAAGCCTCTTGCCTC +
Preference number: 4 (lower is better)
Translates to: NFPQGRLCLQSKNRKAIAKTLLL*VEASCL
Trigger: GAGGCAAGAGGCTTCAACCCACAACAACAGAGTCTT...AGCAATTGCCTTTCTGTTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp CTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAAACTTCTGCAGTTTCTTaGCAGTCACCGCAGGTGGCT +
Preference number: 4 (lower is better)
Translates to: LQHKIQLSTGETVSTKQKTSAVS*QSPQVA
Trigger: AGCCACCTGCGGTGACTGTCAAGAAACTGCAGAAGT...TTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAG
43% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp CTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAATCCCGGAAGTCAGAGTaGCACCCTGAGGAATTTCTC +
Preference number: 4 (lower is better)
Translates to: LQHKIQLSTGETVSTKQKSRKSE*HPEEFL
Trigger: GAGAAATTCCTCAGGGTGTCACTCTGACTTCCGGGA...TTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAAAGAAGTGTACGCTCATaGGGCCGGATATGTACTGCG +
Preference number: 4 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKRSVRS*GRICTA
Trigger: CGCAGTACATATCCGGCCTCATGAGCGTACACTTCT...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTAGCTTGACAGCCAGCTaGTGCGTTTTTGTAACTCTG +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSSLTAS*CVFVTL
Trigger: CAGAGTTACAAAAACGCATCAGCTGGCTGTCAAGCT...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGTCTGTTGTTGTGGGTTaGAGCCTCTTGCCTCTGGTT +
Preference number: 4 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKSVVVG*SLLPLV
Trigger: AACCAGAGGCAAGAGGCTTCAACCCACAACAACAGA...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAATTTGGAGAGGTTGTCTaGGCTCCGGGAACTTTGGGT +
Preference number: 4 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKFGEVV*APGTLG
Trigger: ACCCAAAGTTCCCGGAGCGCAGACAACCTCTCCAAA...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGTCAAGACGTGTGCTATaGCCAAGCTGTCATCCTCAG +
Preference number: 4 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKSRRVL*PSCHPQ
Trigger: CTGAGGATGACAGCTTGGGCATAGCACACGTCTTGA...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GCAAGGTTTATTAAACTATCCCCCAAGGTCTGGTTACCTTTATGCCCAGAACAGACCAGCTTCAGATGCTaGGCATTTTCAATCTCTATG +
Preference number: 4 (lower is better)
Translates to: ARFIKLSPKVWLPLCPEQTSFRC*AFSISM
Trigger: CATAGAGATTGAAAATGCGCAGCATCTGAAGCTGGT...CTGTTCTGGGCATAAAGGTAACCAGACCTTGGGGGATAGTTTAATAAACCTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTTTCTTATCCAGGCCGTaGAGAGAATTCTCCCACTGT +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSFLSRP*REFSHC
Trigger: ACAGTGGGAGAATTCTCTGCACGGCCTGGATAAGAA...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GCAAGGTTTATTAAACTATCCCCCAAGGTCTGGTTACCTTTATGCCCAGAACAGTTTCAATCTCCACGATaGATTTCTGTATCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: ARFIKLSPKVWLPLCPEQFQSPR*ISVSAA
Trigger: CGCTGCTGATACAGAAATGCATCGTGGAGATTGAAA...CTGTTCTGGGCATAAAGGTAACCAGACCTTGGGGGATAGTTTAATAAACCTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp GCAAGGTTTATTAAACTATCCCCCAAGGTCTGGTTACCTTTATGCCCAGAACAGTTCTCGTTTCTTCAGTaGAGAGCCATAGACATTCTC +
Preference number: 4 (lower is better)
Translates to: ARFIKLSPKVWLPLCPEQFSFLQ*RAIDIL
Trigger: GAGAATGTCTATGGCTCTCCACTGAAGAAACGAGAA...CTGTTCTGGGCATAAAGGTAACCAGACCTTGGGGGATAGTTTAATAAACCTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAATACCCAATGCTTGGGTaGAGACACAGGAGAGAGGGA +
Preference number: 4 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKYPMLG*RHRREG
Trigger: TCCCTCTCTCCTGTGTCTCCACCCAAGCATTGGGTA...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTTGTACTGCGAGCATTTaGGTTGATCCGCAAAGCTGT +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSCTASI*VDPQSC
Trigger: ACAGCTTTGCGGATCAACCCAAATGCTCGCAGTACA...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp GCAAGGTTTATTAAACTATCCCCCAAGGTCTGGTTACCTTTATGCCCAGAACAGTCTATGTTGAACGTGTaGTCCATGTCTAAGAAGGTC +
Preference number: 4 (lower is better)
Translates to: ARFIKLSPKVWLPLCPEQSMLNV*SMSKKV
Trigger: GACCTTCTTAGACATGGACCACACGTTCAACATAGA...CTGTTCTGGGCATAAAGGTAACCAGACCTTGGGGGATAGTTTAATAAACCTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAAGGCTCTCGAGACTTCTaGAACTGGACAGTTGTATCC +
Preference number: 4 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKGSRDF*NWTVVS
Trigger: GGATACAACTGTCCAGTTGCAGAAGTCTCGAGAGCC...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS-3UTR GCA 90 bp AACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAACAGAAAGGCAATTGCTTTGTACATCCACTTCTaGAGTTTCTTGACAGTCACC +
Preference number: 4 (lower is better)
Translates to: NFPQGRLCLQSKNRKAIALYIHF*SFLTVT
Trigger: GGTGACTGTCAAGAAACTGCAGAAGTGGATGTACAA...AGCAATTGCCTTTCTGTTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTAGGACGTGGTTTTCATaGACTTTCCAACTGCCCAAA +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSRTWFS*TFQLPK
Trigger: TTTGGGCAGTTGGAAAGTGCATGAAAACCACGTCCT...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GCAAGGTTTATTAAACTATCCCCCAAGGTCTGGTTACCTTTATGCCCAGAACAGTGTCTAGTTCATTTTTaGTACAACTGCTTGGGACAG +
Preference number: 4 (lower is better)
Translates to: ARFIKLSPKVWLPLCPEQCLVHF*YNCLGQ
Trigger: CTGTCCCAAGCAGTTGTAGCAAAAATGAACTAGACA...CTGTTCTGGGCATAAAGGTAACCAGACCTTGGGGGATAGTTTAATAAACCTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGTTCTTATCCAGGCCGTaGAGAGAATTCTCCCACTGT +
Preference number: 4 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKFLSRP*REFSHC
Trigger: ACAGTGGGAGAATTCTCTGCACGGCCTGGATAAGAA...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAGCCTCATACAGCTaGTTGGTTATTAGGGGAGAA +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSTASYS*LVIRGE
Trigger: TTCTCCCCTAATAACCAAGCAGCTGTATGAGGCTGT...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGCCTTCATCAGATCTCTaGCAGACAACATGCTCACAG +
Preference number: 4 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKPSSDL*QTTCSQ
Trigger: CTGTGAGCATGTTGTCTGCCAGAGATCTGATGAAGG...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAAGAAGCCTCTTGCCTCTaGTTAAGCAACACTGGTCCA +
Preference number: 4 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKEASCL*LSNTGP
Trigger: TGGACCAGTGTTGCTTAACCAGAGGCAAGAGGCTTC...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp AACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAACAGAAAGGCAATTGCTCCAATTGCGCTTCTTTaGAACTGTGATGTTGTTAAG +
Preference number: 4 (lower is better)
Translates to: NFPQGRLCLQSKNRKAIAPIALL*NCDVVK
Trigger: CTTAACAACATCACAGTTTCAAAGAAGCGCAATTGG...AGCAATTGCCTTTCTGTTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTTTCACTGAGTCTACCTaGATGGCACAAAACACATCT +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSFTEST*MAQNTS
Trigger: AGATGTGTTTTGTGCCATTCAGGTAGACTCAGTGAA...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAAAGCTTGACAGCCAGCTaGTGCGTTTTTGTAACTCTG +
Preference number: 4 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKSLTAS*CVFVTL
Trigger: CAGAGTTACAAAAACGCATCAGCTGGCTGTCAAGCT...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp CTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAAGCCACCAGTTTCAGATaGTCCAACAACATCTTCAGG +
Preference number: 4 (lower is better)
Translates to: LQHKIQLSTGETVSTKQKATSFR*SNNIFR
Trigger: CCTGAAGATGTTGTTGGATCATCTGAAACTGGTGGC...TTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAACTGAGGTTAGCTTTCTaGTCCACCGTGGATTCAATG +
Preference number: 4 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKLRLAF*STVDSM
Trigger: CATTGAATCCACGGTGGATCAGAAAGCTAACCTCAG...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTTTGTACATCCACTTCTaGAGTTTCTTGACAGTCACC +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSLYIHF*SFLTVT
Trigger: GGTGACTGTCAAGAAACTGCAGAAGTGGATGTACAA...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGAGGACGTGGTTTTCATaGACTTTCCAACTGCCCAAA +
Preference number: 4 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKRTWFS*TFQLPK
Trigger: TTTGGGCAGTTGGAAAGTGCATGAAAACCACGTCCT...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTCATTTTTGCTACAACTaGTTGGGACAGTTTCTCTCC +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSHFCYN*LGQFLS
Trigger: GGAGAGAAACTGTCCCAAGCAGTTGTAGCAAAAATG...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGACAGCCTCATACAGCTaGTTGGTTATTAGGGGAGAA +
Preference number: 4 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKTASYS*LVIRGE
Trigger: TTCTCCCCTAATAACCAAGCAGCTGTATGAGGCTGT...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTGCTCACGTTCCAGATTaGCAATCAAAGTATCAATGC +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSAHVPD*QSKYQC
Trigger: GCATTGATACTTTGATTGGCAATCTGGAACGTGAGC...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp GCAAGGTTTATTAAACTATCCCCCAAGGTCTGGTTACCTTTATGCCCAGAACAGCTTTCGGCTGAATTCTaGCAACCTTTTCATTTTCAT +
Preference number: 4 (lower is better)
Translates to: ARFIKLSPKVWLPLCPEQLSAEF*QPFHFH
Trigger: ATGAAAATGAAAAGGTTGCCAGAATTCAGCCGAAAG...CTGTTCTGGGCATAAAGGTAACCAGACCTTGGGGGATAGTTTAATAAACCTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAAACGGTGGTATCAAGATaGTACCGGCTTATCACGTTC +
Preference number: 4 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKTVVSR*YRLITF
Trigger: GAACGTGATAAGCCGGTACCATCTTGATACCACCGT...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAATGTACTGCGAGCATTTaGGTTGATCCGCAAAGCTGT +
Preference number: 4 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKCTASI*VDPQSC
Trigger: ACAGCTTTGCGGATCAACCCAAATGCTCGCAGTACA...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGCGTTCTCACAACCACTaGACGACATTTTCAAAGGAC +
Preference number: 4 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKRSHNH*TTFSKD
Trigger: GTCCTTTGAAAATGTCGTCCAGTGGTTGTGAGAACG...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAACTTTCTGATCCACCGTaGATTCAATGGTCTGTACCG +
Preference number: 4 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKLSDPP*IQWSVP
Trigger: CGGTACAGACCATTGAATCCACGGTGGATCAGAAAG...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp CTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAATCAGCTTGTTTTTGTTaGGCTCACGTTCCAGATTGC +
Preference number: 4 (lower is better)
Translates to: LQHKIQLSTGETVSTKQKSACFC*AHVPDC
Trigger: GCAATCTGGAACGTGAGCTCAACAAAAACAAGCTGA...TTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp AACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAACAGAAAGGCAATTGCTCTTTGTTTGCAGTGCTaGATAATTTCTGTAGAATGC +
Preference number: 4 (lower is better)
Translates to: NFPQGRLCLQSKNRKAIALCLQC*IISVEC
Trigger: GCATTCTACAGAAATTATGCAGCACTGCAAACAAAG...AGCAATTGCCTTTCTGTTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GCAAGGTTTATTAAACTATCCCCCAAGGTCTGGTTACCTTTATGCCCAGAACAGAACCTTTGTTTGCAGTaGTGCATAATTTCTGTAGAA +
Preference number: 4 (lower is better)
Translates to: ARFIKLSPKVWLPLCPEQNLCLQ*CIISVE
Trigger: TTCTACAGAAATTATGCAGCACTGCAAACAAAGGTT...CTGTTCTGGGCATAAAGGTAACCAGACCTTGGGGGATAGTTTAATAAACCTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GCAAGGTTTATTAAACTATCCCCCAAGGTCTGGTTACCTTTATGCCCAGAACAGAAAGTTTCCTCACAGTaGGTGGAGACTTTATTTTAT +
Preference number: 4 (lower is better)
Translates to: ARFIKLSPKVWLPLCPEQKVSSQ*VETLFY
Trigger: ATAAAATAAAGTCTCCACGCACTGTGAGGAAACTTT...CTGTTCTGGGCATAAAGGTAACCAGACCTTGGGGGATAGTTTAATAAACCTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGTTTGCTACAACTGCTTaGGACAGTTTCTCTCCCTTT +
Preference number: 4 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKFATTA*DSFSPF
Trigger: AAAGGGAGAGAAACTGTCCCAAGCAGTTGTAGCAAA...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR TCA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAATTCACTGAGTCTACCTaGATGGCACAAAACACATCT +
Preference number: 4 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKFTEST*MAQNTS
Trigger: AGATGTGTTTTGTGCCATTCAGGTAGACTCAGTGAA...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTCTTTGTTTGCAGTGCTaGATAATTTCTGTAGAATGC +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSLCLQC*IISVEC
Trigger: GCATTCTACAGAAATTATGCAGCACTGCAAACAAAG...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp AACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAACAGAAAGGCAATTGCTAACCTTTGTTTGCAGTaGTGCATAATTTCTGTAGAA +
Preference number: 4 (lower is better)
Translates to: NFPQGRLCLQSKNRKAIANLCLQ*CIISVE
Trigger: TTCTACAGAAATTATGCAGCACTGCAAACAAAGGTT...AGCAATTGCCTTTCTGTTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGGTATCAATGCTCTCTTaGAAATCTCTGAGGTTAGCT +
Preference number: 4 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKVSMLS*KSLRLA
Trigger: AGCTAACCTCAGAGATTTGCAAGAGAGCATTGATAC...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAATTCTCGTTTCTTCAGTaGAGAGCCATAGACATTCTC +
Preference number: 4 (lower is better)
Translates to: LQHKIQLSTGETVSTKQKFSFLQ*RAIDIL
Trigger: GAGAATGTCTATGGCTCTCCACTGAAGAAACGAGAA...TTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTCTTTCGGCTGAATTCTaGCAACCTTTTCATTTTCAT +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSLSAEF*QPFHFH
Trigger: ATGAAAATGAAAAGGTTGCCAGAATTCAGCCGAAAG...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAATTTGCTACAACTGCTTaGGACAGTTTCTCTCCCTTT +
Preference number: 4 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKFATTA*DSFSPF
Trigger: AAAGGGAGAGAAACTGTCCCAAGCAGTTGTAGCAAA...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAACTGAGTCTACCTGAATaGCACAAAACACATCTTTCG +
Preference number: 4 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKLSLPE*HKTHLS
Trigger: CGAAAGATGTGTTTTGTGCCATTCAGGTAGACTCAG...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAACTGAGTCTACCTGAATaGCACAAAACACATCTTTCG +
Preference number: 4 (lower is better)
Translates to: LQHKIQLSTGETVSTKQKLSLPE*HKTHLS
Trigger: CGAAAGATGTGTTTTGTGCCATTCAGGTAGACTCAG...TTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTTTTATATCTGGGTACTaGTTTTCACACAGACCAACA +
Preference number: 4 (lower is better)
Translates to: EAERLQHKIQLSTGETVSFISGY*FSHRPT
Trigger: TGTTGGTCTGTGTGAAAACCAGTACCCAGATATAAA...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAATTTCCTCACAGTGCGTaGAGACTTTATTTTATCTGG +
Preference number: 4 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKFPHSA*RLYFIW
Trigger: CCAGATAAAATAAAGTCTCCACGCACTGTGAGGAAA...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CCA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAATTTATATCTGGGTACTaGTTTTCACACAGACCAACA +
Preference number: 4 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKFISGY*FSHRPT
Trigger: TGTTGGTCTGTGTGAAAACCAGTACCCAGATATAAA...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR GCA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAAAAAGTTTCCTCACAGTaGGTGGAGACTTTATTTTAT +
Preference number: 4 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKKVSSQ*VETLFY
Trigger: ATAAAATAAAGTCTCCACGCACTGTGAGGAAACTTT...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
36% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS TCA 90 bp CTCCACGTGGCTGGGGCTCGTCCCTGTCCCGGTGCGCACCGCACCTaGTGCAGCTGTCGCTCGCCCACCGCTGGAGCAGAGGCGGCCGCC +
Preference number: 5 (lower is better)
Translates to: LHVAGARPCPGAHRT*CSCRSPTAGAEAAA
Trigger: GGCGGCCGCCTCTGCTCCAGCGGTGGGCGAGCGACAGCTGCATCAGGTGCGGTGCGCACCGGGACAGGGACGAGCCCCAGCCACGTGGAG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS GCA 90 bp CCGTCCATCCCACCTCCACGTGGCTGGGGCTCGTCCCTGTCCCGGTaGGCACCGCACCTGATGCAGCTGTCGCTCGCCCACCGCTGGAGC +
Preference number: 5 (lower is better)
Translates to: PSIPPPRGWGSSLSR*APHLMQLSLAHRWS
Trigger: GCTCCAGCGGTGGGCGAGCGACAGCTGCATCAGGTGCGGTGCGCACCGGGACAGGGACGAGCCCCAGCCACGTGGAGGTGGGATGGACGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS CCA 90 bp TCCCGGTGCGCACCGCACCTGATGCAGCTGTCGCTCGCCCACCGCTaGAGCAGAGGCGGCCGCCGGCTCACGCGGAGGCTCTCGAGACTT +
Preference number: 5 (lower is better)
Translates to: SRCAPHLMQLSLAHR*SRGGRRLTRRLSRL
Trigger: AAGTCTCGAGAGCCTCCGCGTGAGCCGGCGGCCGCCTCTGCTCCAGCGGTGGGCGAGCGACAGCTGCATCAGGTGCGGTGCGCACCGGGA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS CCA 90 bp CTGTGGCTGCCCGGGCTCCAGCCGTCCATCCCACCTCCACGTGGCTaGGGCTCGTCCCTGTCCCGGTGCGCACCGCACCTGATGCAGCTG +
Preference number: 5 (lower is better)
Translates to: LWLPGLQPSIPPPRG*GSSLSRCAPHLMQL
Trigger: CAGCTGCATCAGGTGCGGTGCGCACCGGGACAGGGACGAGCCCCAGCCACGTGGAGGTGGGATGGACGGCTGGAGCCCGGGCAGCCACAG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS GCA 90 bp GGAGCAGAGGCGGCCGCCGGCTCACGCGGAGGCTCTCGAGACTTCTaGAACTGGACAGTTGTATCCGAGGACTGGGAGGCCGTCCCTCTC +
Preference number: 5 (lower is better)
Translates to: GAEAAAGSRGGSRDF*NWTVVSEDWEAVPL
Trigger: GAGAGGGACGGCCTCCCAGTCCTCGGATACAACTGTCCAGTTGCAGAAGTCTCGAGAGCCTCCGCGTGAGCCGGCGGCCGCCTCTGCTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS CCA 90 bp CGGGTCCGCCCCGCCGCGTGCCCGAGTCAGGGGGTAGGTCGTGCATaGCCTGGATCAGCAGATAATAGGCCTCTCGCAACTGGGTCTGCA +
Preference number: 5 (lower is better)
Translates to: RVRPAACPSQGVGRA*PGSADNRPLATGSA
Trigger: TGCAGACCCAGTTGCGAGAGGCCTATTATCTGCTGATCCAGGCCATGCACGACCTACCCCCTGACTCGGGCACGCGGCGGGGCGGACCCG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS CCA 90 bp GGAGGCTCTCGAGACTTCTGCAACTGGACAGTTGTATCCGAGGACTaGGAGGCCGTCCCTCTCTCGACTCCGTCGGAGGCGACCGGGGCG +
Preference number: 5 (lower is better)
Translates to: GGSRDFCNWTVVSED*EAVPLSTPSEATGA
Trigger: CGCCCCGGTCGCCTCCGACGGAGTCGAGAGAGGGACGGCCTCCCAGTCCTCGGATACAACTGTCCAGTTGCAGAAGTCTCGAGAGCCTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS CCA 90 bp GAGGCGGCCGCCGGCTCACGCGGAGGCTCTCGAGACTTCTGCAACTaGACAGTTGTATCCGAGGACTGGGAGGCCGTCCCTCTCTCGACT +
Preference number: 5 (lower is better)
Translates to: EAAAGSRGGSRDFCN*TVVSEDWEAVPLST
Trigger: AGTCGAGAGAGGGACGGCCTCCCAGTCCTCGGATACAACTGTCCAGTTGCAGAAGTCTCGAGAGCCTCCGCGTGAGCCGGCGGCCGCCTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS GCA 90 bp ACTGCCCAAATTTGGAGAGGTTGTCTGCGCTCCGGGAACTTTGGGTaGTGTCCCGCGATCGCGACCCTTCATCCCCAGGGACAGCAGACG +
Preference number: 5 (lower is better)
Translates to: TAQIWRGCLRSGNFG*CPAIATLHPQGQQT
Trigger: CGTCTGCTGTCCCTGGGGATGAAGGGTCGCGATCGCGGGACAGCACCCAAAGTTCCCGGAGCGCAGACAACCTCTCCAAATTTGGGCAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS TCA 90 bp GGGTTGCCTTCTCAACGTCCGGCAGGCAATCCAGGAGGTCCACAGTaGGCCTGGAGTCACTGGGCTCGTTCTCACAACCACTGGACGACA +
Preference number: 5 (lower is better)
Translates to: GLPSQRPAGNPGGPQ*AWSHWARSHNHWTT
Trigger: TGTCGTCCAGTGGTTGTGAGAACGAGCCCAGTGACTCCAGGCTCACTGTGGACCTCCTGGATTGCCTGCCGGACGTTGAGAAGGCAACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CCA 90 bp TCCAACTGCCCAAATTTGGAGAGGTTGTCTGCGCTCCGGGAACTTTaGGTGCTGTCCCGCGATCGCGACCCTTCATCCCCAGGGACAGCA +
Preference number: 5 (lower is better)
Translates to: SNCPNLERLSALREL*VLSRDRDPSSPGTA
Trigger: TGCTGTCCCTGGGGATGAAGGGTCGCGATCGCGGGACAGCACCCAAAGTTCCCGGAGCGCAGACAACCTCTCCAAATTTGGGCAGTTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CCA 90 bp GTCACCGCAGGTGGCTTGAGGGGAAGATCCTCCGGATGGTCCTCTTaGCTGCTGGATATCACAGAGGTCCCCACAGGATCCTTAAAGGGT +
Preference number: 5 (lower is better)
Translates to: VTAGGLRGRSSGWSS*LLDITEVPTGSLKG
Trigger: ACCCTTTAAGGATCCTGTGGGGACCTCTGTGATATCCAGCAGCCAAGAGGACCATCCGGAGGATCTTCCCCTCAAGCCACCTGCGGTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CCA 90 bp TTCTTGACAGTCACCGCAGGTGGCTTGAGGGGAAGATCCTCCGGATaGTCCTCTTGGCTGCTGGATATCACAGAGGTCCCCACAGGATCC +
Preference number: 5 (lower is better)
Translates to: FLTVTAGGLRGRSSG*SSWLLDITEVPTGS
Trigger: GGATCCTGTGGGGACCTCTGTGATATCCAGCAGCCAAGAGGACCATCCGGAGGATCTTCCCCTCAAGCCACCTGCGGTGACTGTCAAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CCA 90 bp GTAGCCCTGGCAGCATTACACACCGCATGTGTGCAGTGCGGCCTGTaGGATACCCAATGCTTGGGTGGAGACACAGGAGAGAGGGAGAAA +
Preference number: 5 (lower is better)
Translates to: VALAALHTACVQCGL*DTQCLGGDTGEREK
Trigger: TTTCTCCCTCTCTCCTGTGTCTCCACCCAAGCATTGGGTATCCCACAGGCCGCACTGCACACATGCGGTGTGTAATGCTGCCAGGGCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS TCA 90 bp TGCCATGACAGCACACGCGGTTCCTCCTCGGCGTGGGCTCCCAGCTaGACACCACCAGCTTCAGATGCTGCGCATTTTCAATCTCTATGT +
Preference number: 5 (lower is better)
Translates to: CHDSTRGSSSAWAPS*TPPASDAAHFQSLC
Trigger: ACATAGAGATTGAAAATGCGCAGCATCTGAAGCTGGTGGTGTTCAGCTGGGAGCCCACGCCGAGGAGGAACCGCGTGTGCTGTCATGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CCA 90 bp AGCTCCCAAGGGGTTTCTTCCGGTAGCTGTGCCGAGAGGATACGGTaGTATCAAGATGGTACCGGCTTATCACGTTCCTGGTGGTGTTCC +
Preference number: 5 (lower is better)
Translates to: SSQGVSSGSCAERIR*YQDGTGLSRSWWCS
Trigger: GGAACACCACCAGGAACGTGATAAGCCGGTACCATCTTGATACCACCGTATCCTCTCGGCACAGCTACCGGAAGAAACCCCTTGGGAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS GCA 90 bp GTAGGAGGCCACCAGTTTCAGATGATCCAACAACATCTTCAGGGTTaGCTTCTCAACGTCCGGCAGGCAATCCAGGAGGTCCACAGTGAG +
Preference number: 5 (lower is better)
Translates to: VGGHQFQMIQQHLQG*LLNVRQAIQEVHSE
Trigger: CTCACTGTGGACCTCCTGGATTGCCTGCCGGACGTTGAGAAGGCAACCCTGAAGATGTTGTTGGATCATCTGAAACTGGTGGCCTCCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS-3UTR CAA 90 bp CCTTGTCGGGATAATAATGTACCCGACCCTTACAAACATCTGCATGTCTCCTCCTCCCAGGACTGGGGCTaGGAGAAGACGGCTCCATCG +
Preference number: 5 (lower is better)
Translates to: PCRDNNVPDPYKHLHVSSSQDWG*EKTAPS
Trigger: CGATGGAGCCGTCTTCTCCAAGCCCCAGTCCTGGGA...GGAGGAGACATGCAGATGTTTGTAAGGGTCGGGTACATTATTATCCCGACAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS TCA 90 bp TCCGGGGCGGTTTTAAACCCTCAGCTCCATAGAAGTGTACGCTCATaGGGCCGGATATGTACTGCGAGCATTTGGGTTGATCCGCAAAGC +
Preference number: 5 (lower is better)
Translates to: SGAVLNPQLHRSVRS*GRICTASIWVDPQS
Trigger: GCTTTGCGGATCAACCCAAATGCTCGCAGTACATATCCGGCCTCATGAGCGTACACTTCTATGGAGCTGAGGGTTTAAAACCGCCCCGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS GCA 90 bp CTCCTCGGCGTGGGCTCCCAGCTGAACACCACCAGCTTCAGATGCTaGGCATTTTCAATCTCTATGTTGAACGTGTGGTCCATGTCTAAG +
Preference number: 5 (lower is better)
Translates to: LLGVGSQLNTTSFRC*AFSISMLNVWSMSK
Trigger: CTTAGACATGGACCACACGTTCAACATAGAGATTGAAAATGCGCAGCATCTGAAGCTGGTGGTGTTCAGCTGGGAGCCCACGCCGAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS GCA 90 bp TTCCTCCTCGGCGTGGGCTCCCAGCTGAACACCACCAGCTTCAGATaGTGCGCATTTTCAATCTCTATGTTGAACGTGTGGTCCATGTCT +
Preference number: 5 (lower is better)
Translates to: FLLGVGSQLNTTSFR*CAFSISMLNVWSMS
Trigger: AGACATGGACCACACGTTCAACATAGAGATTGAAAATGCGCAGCATCTGAAGCTGGTGGTGTTCAGCTGGGAGCCCACGCCGAGGAGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS-3UTR CAA 90 bp CCTTGTCGGGATAATAATGTACCCGACCCTTACAAACATCTGCATGTCTCCTCCCTAATCGGGCCTGCCTaGTCCTCAGCACCCCTGATG +
Preference number: 5 (lower is better)
Translates to: PCRDNNVPDPYKHLHVSSLIGPA*SSAPLM
Trigger: CATCAGGGGTGCTGAGGACAAGGCAGGCCCGATTAG...GGAGGAGACATGCAGATGTTTGTAAGGGTCGGGTACATTATTATCCCGACAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS TCA 90 bp TTTGTGCTCCGATCCATGCTTGCTAGATCTAGTTCTCAGTTCGGGTaGGTCTCCGTCGCTGAGGTACCCACCCTTGCAGGAATACTTCGA +
Preference number: 5 (lower is better)
Translates to: FVLRSMLARSSSQFG*VSVAEVPTLAGILR
Trigger: TCGAAGTATTCCTGCAAGGGTGGGTACCTCAGCGACGGAGACTCACCCGAACTGAGAACTAGATCTAGCAAGCATGGATCGGAGCACAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS GCA 90 bp CTTGGGACAGTTTCTCTCCCTTTCCCAAGTTTGTGCTCCGATCCATaGTTGCTAGATCTAGTTCTCAGTTCGGGTGAGTCTCCGTCGCTG +
Preference number: 5 (lower is better)
Translates to: LGTVSLPFPSLCSDP*LLDLVLSSGESPSL
Trigger: CAGCGACGGAGACTCACCCGAACTGAGAACTAGATCTAGCAAGCATGGATCGGAGCACAAACTTGGGAAAGGGAGAGAAACTGTCCCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS-3UTR CAA 90 bp CAGCTGCAGTGTCCTCTGCAGAGAACATCCGTCTCCACGTACAGAAGAACATTCTCCAACTGCCCAAATTaGGAGAGGTTGTCTGCGCTC +
Preference number: 5 (lower is better)
Translates to: QLQCPLQRTSVSTYRRTFSNCPN*ERLSAL
Trigger: GAGCGCAGACAACCTCTCCAAATTTGGGCAGTTGGA...GAATGTTCTTCTGTACGTGGAGACGGATGTTCTCTGCAGAGGACACTGCAGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS TCA 90 bp ACTCTGAGACCTCAGGGTGCTCTGATACAGCCAATTGCGCTTCTTTaGAACTGTGATGTTGTTAAGGGGCTGGTGACCTCTAAGCTCGGC +
Preference number: 5 (lower is better)
Translates to: TLRPQGALIQPIALL*NCDVVKGLVTSKLG
Trigger: GCCGAGCTTAGAGGTCACCAGCCCCTTAACAACATCACAGTTTCAAAGAAGCGCAATTGGCTGTATCAGAGCACCCTGAGGTCTCAGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS TCA 90 bp CCATATTTCTCCTTCATCGTCCGCATCATTGTCCTCGCTAAAGGCTaGAGAGCCGTTTCTGGACAACGTAGCCCTGGCAGCATTACACAC +
Preference number: 5 (lower is better)
Translates to: PYFSFIVRIIVLAKG*RAVSGQRSPGSITH
Trigger: GTGTGTAATGCTGCCAGGGCTACGTTGTCCAGAAACGGCTCTTCAGCCTTTAGCGAGGACAATGATGCGGACGATGAAGGAGAAATATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS TCA 90 bp CGACAGGTGAGCAGGGCCGTTCTGGCTTTGTTCACTGAGTCTACCTaGATGGCACAAAACACATCTTTCGAATCTATCCGGGGCGGTTTT +
Preference number: 5 (lower is better)
Translates to: RQVSRAVLALFTEST*MAQNTSFESIRGGF
Trigger: AAAACCGCCCCGGATAGATTCGAAAGATGTGTTTTGTGCCATTCAGGTAGACTCAGTGAACAAAGCCAGAACGGCCCTGCTCACCTGTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS TCA 90 bp GAAGGTCGTCCGACAGGTGAGCAGGGCCGTTCTGGCTTTGTTCACTaGGTCTACCTGAATGGCACAAAACACATCTTTCGAATCTATCCG +
Preference number: 5 (lower is better)
Translates to: EGRPTGEQGRSGFVH*VYLNGTKHIFRIYP
Trigger: CGGATAGATTCGAAAGATGTGTTTTGTGCCATTCAGGTAGACTCAGTGAACAAAGCCAGAACGGCCCTGCTCACCTGTCGGACGACCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CCA 90 bp ACCAGCTTCAGATGCTGCGCATTTTCAATCTCTATGTTGAACGTGTaGTCCATGTCTAAGAAGGTCGTCCGACAGGTGAGCAGGGCCGTT +
Preference number: 5 (lower is better)
Translates to: TSFRCCAFSISMLNV*SMSKKVVRQVSRAV
Trigger: AACGGCCCTGCTCACCTGTCGGACGACCTTCTTAGACATGGACCACACGTTCAACATAGAGATTGAAAATGCGCAGCATCTGAAGCTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS-3UTR CAA 90 bp CCTTGTCGGGATAATAATGTACCCGACCCTTACAAACATCTGCATGTCTCCTCCTGGGATACCCAATGCTaGGGTGGAGACACAGGAGAG +
Preference number: 5 (lower is better)
Translates to: PCRDNNVPDPYKHLHVSSWDTQC*GGDTGE
Trigger: CTCTCCTGTGTCTCCACCCAAGCATTGGGTATCCCA...GGAGGAGACATGCAGATGTTTGTAAGGGTCGGGTACATTATTATCCCGACAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp AACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAACAGAAAGGCAATTGCTTCCCAGGACTGGGGCTaGGAGAAGACGGCTCCATCG +
Preference number: 5 (lower is better)
Translates to: NFPQGRLCLQSKNRKAIASQDWG*EKTAPS
Trigger: CGATGGAGCCGTCTTCTCCAAGCCCCAGTCCTGGGA...AGCAATTGCCTTTCTGTTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS TCA 90 bp CTTATCACGTTCCTGGTGGTGTTCCCGGAAGTCAGAGTGACACCCTaGGGAATTTCTCGACAGTTCCATTTAGACAAAGGAGGGGTGCTA +
Preference number: 5 (lower is better)
Translates to: LITFLVVFPEVRVTP*GISRQFHLDKGGVL
Trigger: TAGCACCCCTCCTTTGTCTAAATGGAACTGTCGAGAAATTCCTCAGGGTGTCACTCTGACTTCCGGGAACACCACCAGGAACGTGATAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS TCA 90 bp ACTGGCAAGCTCTTCAGAATCGGTGAAGACTCTGTTGTTGTGGGTTaGAGCCTCTTGCCTCTGGTTAAGCAACACTGGTCCAAAGCACAC +
Preference number: 5 (lower is better)
Translates to: TGKLFRIGEDSVVVG*SLLPLVKQHWSKAH
Trigger: GTGTGCTTTGGACCAGTGTTGCTTAACCAGAGGCAAGAGGCTTCAACCCACAACAACAGAGTCTTCACCGATTCTGAAGAGCTTGCCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS TCA 90 bp TCAGAGAAGACGACTGCTCCAGGCACAAACTGTCTCTGGGTTCTTTaGCAGTTAAGCGTTGCACTGGCCAGAGCTGGAGCAAGTAATGAA +
Preference number: 5 (lower is better)
Translates to: SEKTTAPGTNCLWVL*QLSVALARAGASNE
Trigger: TTCATTACTTGCTCCAGCTCTGGCCAGTGCAACGCTTAACTGTCAAAGAACCCAGAGACAGTTTGTGCCTGGAGCAGTCGTCTTCTCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS GCA 90 bp GAATGCATGGAATCTGCAGAATTAATTCCATTTGACTGTGAGGTCTaGACGTCCCCTCTGTCTTCACTAGGAGGCTCCGCCTTCATCAGA +
Preference number: 5 (lower is better)
Translates to: ECMESAELIPFDCEV*TSPLSSLGGSAFIR
Trigger: TCTGATGAAGGCGGAGCCTCCTAGTGAAGACAGAGGGGACGTGCAGACCTCACAGTCAAATGGAATTAATTCTGCAGATTCCATGCATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS GCA 90 bp TTCAACACAGGGCTATCCTCTGCCGTCGGGCTTTCTTGTGTCCTGTaGCCTAACCTTTGTTTGCAGTGCTGCATAATTTCTGTAGAATGC +
Preference number: 5 (lower is better)
Translates to: FNTGLSSAVGLSCVL*PNLCLQCCIISVEC
Trigger: GCATTCTACAGAAATTATGCAGCACTGCAAACAAAGGTTAGGGCACAGGACACAAGAAAGCCCGACGGCAGAGGATAGCCCTGTGTTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CCA 90 bp TCTGCTGTCAGTGTGATTCTTTGGTCCGTTGTCACCGAGAGGACGTaGTTTTCATGCACTTTCCAACTGCCCAAATTTGGAGAGGTTGTC +
Preference number: 5 (lower is better)
Translates to: SAVSVILWSVVTERT*FSCTFQLPKFGEVV
Trigger: GACAACCTCTCCAAATTTGGGCAGTTGGAAAGTGCATGAAAACCACGTCCTCTCGGTGACAACGGACCAAAGAATCACACTGACAGCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212479.2
CDS-3UTR CAA 90 bp GCAAGGTTTATTAAACTATCCCCCAAGGTCTGGTTACCTTTATGCCCAGAACAGCACTTCTGCAGTTTCTaGACAGTCACCGCAGGTGGC +
Preference number: 5 (lower is better)
Translates to: ARFIKLSPKVWLPLCPEQHFCSF*TVTAGG
Trigger: GCCACCTGCGGTGACTGTCAAGAAACTGCAGAAGTG...CTGTTCTGGGCATAAAGGTAACCAGACCTTGGGGGATAGTTTAATAAACCTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS GCA 90 bp TCTTCAGAATCGGTGAAGACTCTGTTGTTGTGGGTTGAAGCCTCTTaGCTCTGGTTAAGCAACACTGGTCCAAAGCACACAGCCAAATTC +
Preference number: 5 (lower is better)
Translates to: SSESVKTLLLWVEAS*LWLSNTGPKHTAKF
Trigger: GAATTTGGCTGTGTGCTTTGGACCAGTGTTGCTTAACCAGAGGCAAGAGGCTTCAACCCACAACAACAGAGTCTTCACCGATTCTGAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS-3UTR CAA 90 bp AACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAACAGAAAGGCAATTGCTTGGGATACCCAATGCTaGGGTGGAGACACAGGAGAG +
Preference number: 5 (lower is better)
Translates to: NFPQGRLCLQSKNRKAIAWDTQC*GGDTGE
Trigger: CTCTCCTGTGTCTCCACCCAAGCATTGGGTATCCCA...AGCAATTGCCTTTCTGTTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp GCAAGGTTTATTAAACTATCCCCCAAGGTCTGGTTACCTTTATGCCCAGAACAGCTCTGTTGTTGTGGGTaGAAGCCTCTTGCCTCTGGT +
Preference number: 5 (lower is better)
Translates to: ARFIKLSPKVWLPLCPEQLCCCG*KPLASG
Trigger: ACCAGAGGCAAGAGGCTTCAACCCACAACAACAGAG...CTGTTCTGGGCATAAAGGTAACCAGACCTTGGGGGATAGTTTAATAAACCTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGCTAATCGGGCCTGCCTaGTCCTCAGCACCCCTGATG +
Preference number: 5 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKLIGPA*SSAPLM
Trigger: CATCAGGGGTGCTGAGGACAAGGCAGGCCCGATTAG...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp CAGCTGCAGTGTCCTCTGCAGAGAACATCCGTCTCCACGTACAGAAGAACATTCACACTCATGTTCAGCTaGTTTTTGTTGAGCTCACGT +
Preference number: 5 (lower is better)
Translates to: QLQCPLQRTSVSTYRRTFTLMFS*FLLSSR
Trigger: ACGTGAGCTCAACAAAAACAAGCTGAACATGAGTGT...GAATGTTCTTCTGTACGTGGAGACGGATGTTCTCTGCAGAGGACACTGCAGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS TCA 90 bp TCAGTGGAGAGCCATAGACATTCTCAAATAAGTCTGCTGTCAGTGTaGTTCTTTGGTCCGTTGTCACCGAGAGGACGTGGTTTTCATGCA +
Preference number: 5 (lower is better)
Translates to: SVESHRHSQISLLSV*FFGPLSPRGRGFHA
Trigger: TGCATGAAAACCACGTCCTCTCGGTGACAACGGACCAAAGAATCACACTGACAGCAGACTTATTTGAGAATGTCTATGGCTCTCCACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212479.2
CDS-3UTR CAA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTCTGAGGTACCCACCCTaGCAGGAATACTTCGAGCTC +
Preference number: 5 (lower is better)
Translates to: EAERLQHKIQLSTGETVSLRYPP*QEYFEL
Trigger: GAGCTCGAAGTATTCCTGCAAGGGTGGGTACCTCAG...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp GCAAGGTTTATTAAACTATCCCCCAAGGTCTGGTTACCTTTATGCCCAGAACAGCACAGACCAACAGTCTaGCTGTCCTTCTCAAAAGCC +
Preference number: 5 (lower is better)
Translates to: ARFIKLSPKVWLPLCPEQHRPTV*LSFSKA
Trigger: GGCTTTTGAGAAGGACAGCAAGACTGTTGGTCTGTG...CTGTTCTGGGCATAAAGGTAACCAGACCTTGGGGGATAGTTTAATAAACCTTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGCACTTCTGCAGTTTCTaGACAGTCACCGCAGGTGGC +
Preference number: 5 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKHFCSF*TVTAGG
Trigger: GCCACCTGCGGTGACTGTCAAGAAACTGCAGAAGTG...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTTCCAACTGCCCAAATTaGGAGAGGTTGTCTGCGCTC +
Preference number: 5 (lower is better)
Translates to: EAERLQHKIQLSTGETVSSNCPN*ERLSAL
Trigger: GAGCGCAGACAACCTCTCCAAATTTGGGCAGTTGGA...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGCTGAGGTACCCACCCTaGCAGGAATACTTCGAGCTC +
Preference number: 5 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKLRYPP*QEYFEL
Trigger: GAGCTCGAAGTATTCCTGCAAGGGTGGGTACCTCAG...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp AACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAACAGAAAGGCAATTGCTGTGAAGACTCTGTTGTaGTGGGTTGAAGCCTCTTGC +
Preference number: 5 (lower is better)
Translates to: NFPQGRLCLQSKNRKAIAVKTLL*WVEASC
Trigger: GCAAGAGGCTTCAACCCACAACAACAGAGTCTTCAC...AGCAATTGCCTTTCTGTTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS TCA 90 bp ATATGTACTGCGAGCATTTGGGTTGATCCGCAAAGCTGTAATGTCTaGAGGCACCGATGTCTAGTTCATTTTTGCTACAACTGCTTGGGA +
Preference number: 5 (lower is better)
Translates to: ICTASIWVDPQSCNV*RHRCLVHFCYNCLG
Trigger: TCCCAAGCAGTTGTAGCAAAAATGAACTAGACATCGGTGCCTTCAGACATTACAGCTTTGCGGATCAACCCAAATGCTCGCAGTACATAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS GCA 90 bp GCCGTCGGGCTTTCTTGTGTCCTGTGCCCTAACCTTTGTTTGCAGTaGTGCATAATTTCTGTAGAATGCATGGAATCTGCAGAATTAATT +
Preference number: 5 (lower is better)
Translates to: AVGLSCVLCPNLCLQ*CIISVECMESAELI
Trigger: AATTAATTCTGCAGATTCCATGCATTCTACAGAAATTATGCAGCACTGCAAACAAAGGTTAGGGCACAGGACACAAGAAAGCCCGACGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS-3UTR CAA 90 bp GCAAGGTTTATTAAACTATCCCCCAAGGTCTGGTTACCTTTATGCCCAGAACAGTTTTGCTACAACTGCTaGGGACAGTTTCTCTCCCTT +
Preference number: 5 (lower is better)
Translates to: ARFIKLSPKVWLPLCPEQFCYNC*GQFLSL
Trigger: AAGGGAGAGAAACTGTCCCAAGCAGTTGTAGCAAAA...CTGTTCTGGGCATAAAGGTAACCAGACCTTGGGGGATAGTTTAATAAACCTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTCACAGACCAACAGTCTaGCTGTCCTTCTCAAAAGCC +
Preference number: 5 (lower is better)
Translates to: EAERLQHKIQLSTGETVSHRPTV*LSFSKA
Trigger: GGCTTTTGAGAAGGACAGCAAGACTGTTGGTCTGTG...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS GCA 90 bp GTCGGGCTTTCTTGTGTCCTGTGCCCTAACCTTTGTTTGCAGTGCTaGATAATTTCTGTAGAATGCATGGAATCTGCAGAATTAATTCCA +
Preference number: 5 (lower is better)
Translates to: VGLSCVLCPNLCLQC*IISVECMESAELIP
Trigger: TGGAATTAATTCTGCAGATTCCATGCATTCTACAGAAATTATGCAGCACTGCAAACAAAGGTTAGGGCACAGGACACAAGAAAGCCCGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS-3UTR CAA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGGACAGCAGACGTCCTTaGTACATCCACTTCTGCAGT +
Preference number: 5 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKDSRRP*YIHFCS
Trigger: ACTGCAGAAGTGGATGTACAAAGGACGTCTGCTGTC...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAACTCTGTTGTTGTGGGTaGAAGCCTCTTGCCTCTGGT +
Preference number: 5 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKLCCCG*KPLASG
Trigger: ACCAGAGGCAAGAGGCTTCAACCCACAACAACAGAG...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTTCCGCTCCGGCTGTTTaGCTATACTGTCTACTTTCT +
Preference number: 5 (lower is better)
Translates to: EAERLQHKIQLSTGETVSSAPAV*LYCLLS
Trigger: AGAAAGTAGACAGTATAGCAAAACAGCCGGAGCGGA...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp GCAAGGTTTATTAAACTATCCCCCAAGGTCTGGTTACCTTTATGCCCAGAACAGAGCTCACGTTCCAGATaGCCAATCAAAGTATCAATG +
Preference number: 5 (lower is better)
Translates to: ARFIKLSPKVWLPLCPEQSSRSR*PIKVSM
Trigger: CATTGATACTTTGATTGGCAATCTGGAACGTGAGCT...CTGTTCTGGGCATAAAGGTAACCAGACCTTGGGGGATAGTTTAATAAACCTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAAGTGAAGACTCTGTTGTaGTGGGTTGAAGCCTCTTGC +
Preference number: 5 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKVKTLL*WVEASC
Trigger: GCAAGAGGCTTCAACCCACAACAACAGAGTCTTCAC...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp CTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAATCGGTGAAGACTCTGTaGTTGTGGGTTGAAGCCTCT +
Preference number: 5 (lower is better)
Translates to: LQHKIQLSTGETVSTKQKSVKTL*LWVEAS
Trigger: AGAGGCTTCAACCCACAACAACAGAGTCTTCACCGA...TTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp AACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAACAGAAAGGCAATTGCTTTTTCAATCTCTATGTaGAACGTGTGGTCCATGTCT +
Preference number: 5 (lower is better)
Translates to: NFPQGRLCLQSKNRKAIAFSISM*NVWSMS
Trigger: AGACATGGACCACACGTTCAACATAGAGATTGAAAA...AGCAATTGCCTTTCTGTTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp CTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAATCCGCTCCGGCTGTTTaGCTATACTGTCTACTTTCT +
Preference number: 5 (lower is better)
Translates to: LQHKIQLSTGETVSTKQKSAPAV*LYCLLS
Trigger: AGAAAGTAGACAGTATAGCAAAACAGCCGGAGCGGA...TTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTAGCTCACGTTCCAGATaGCCAATCAAAGTATCAATG +
Preference number: 5 (lower is better)
Translates to: EAERLQHKIQLSTGETVSSSRSR*PIKVSM
Trigger: CATTGATACTTTGATTGGCAATCTGGAACGTGAGCT...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTTTCAGCTTGTTTTTGTaGAGCTCACGTTCCAGATTG +
Preference number: 5 (lower is better)
Translates to: EAERLQHKIQLSTGETVSFSLFL*SSRSRL
Trigger: CAATCTGGAACGTGAGCTCAACAAAAACAAGCTGAA...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp GAAGCTGAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTTTTTCAATCTCTATGTaGAACGTGTGGTCCATGTCT +
Preference number: 5 (lower is better)
Translates to: EAERLQHKIQLSTGETVSFSISM*NVWSMS
Trigger: AGACATGGACCACACGTTCAACATAGAGATTGAAAA...AGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTCAGCTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGTTCAGCTTGTTTTTGTaGAGCTCACGTTCCAGATTG +
Preference number: 5 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKFSLFL*SSRSRL
Trigger: CAATCTGGAACGTGAGCTCAACAAAAACAAGCTGAA...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp GAAAGACTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGATGTTCAGCTTGTTTTaGTTGAGCTCACGTTCCAGA +
Preference number: 5 (lower is better)
Translates to: ERLQHKIQLSTGETVSTKMFSLF*LSSRSR
Trigger: TCTGGAACGTGAGCTCAACAAAAACAAGCTGAACAT...CTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAGTCTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAAATGTTCAGCTTGTTTTaGTTGAGCTCACGTTCCAGA +
Preference number: 5 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKMFSLF*LSSRSR
Trigger: TCTGGAACGTGAGCTCAACAAAAACAAGCTGAACAT...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp CTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAAACACTCATGTTCAGCTaGTTTTTGTTGAGCTCACGT +
Preference number: 5 (lower is better)
Translates to: LQHKIQLSTGETVSTKQKTLMFS*FLLSSR
Trigger: ACGTGAGCTCAACAAAAACAAGCTGAACATGAGTGT...TTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAG
39% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp CATGGTGTACACCTGCATCACCTCTGGTTACATTTGTTACACAATGTTTTAAAATTTCTCTACAACTTTTaGAATGTCGACTCCGAACAT +
Preference number: 5 (lower is better)
Translates to: HGVHLHHLWLHLLHNVLKFLYNF*NVDSEH
Trigger: ATGTTCGGAGTCGACATTCAAAAAGTTGTAGAGAAA...TTTTAAAACATTGTGTAACAAATGTAACCAGAGGTGATGCAGGTGTACACCATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS-3UTR CAA 90 bp CTTCAACATAAAATACAACTTTCCACAGGGGAGACTGTGTCTACAAAGCAAAAATTTCTCTACAACTTTTaGAATGTCGACTCCGAACAT +
Preference number: 5 (lower is better)
Translates to: LQHKIQLSTGETVSTKQKFLYNF*NVDSEH
Trigger: ATGTTCGGAGTCGACATTCAAAAAGTTGTAGAGAAA...TTTTTGCTTTGTAGACACAGTCTCCCCTGTGGAAAGTTGTATTTTATGTTGAAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS GCA 72 bp CTCGACTCCGTCGGAGGCGACCGGGGCGGGGACACCTaGTGCGGAGGGCGGTCGCCGCCTCGGAGGCTGCAG +
Preference number: 6 (lower is better)
Translates to: LDSVGGDRGGDT*CGGRSPPRRLQ
Trigger: CTGCAGCCTCCGAGGCGGCGACCGCCCTCCGCAGCAGGTGTCCCCGCCCCGGTCGCCTCCGACGGAGTCGAG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS CCA 72 bp GCACCGCACCTGATGCAGCTGTCGCTCGCCCACCGCTaGAGCAGAGGCGGCCGCCGGCTCACGCGGAGGCTC +
Preference number: 6 (lower is better)
Translates to: APHLMQLSLAHR*SRGGRRLTRRL
Trigger: GAGCCTCCGCGTGAGCCGGCGGCCGCCTCTGCTCCAGCGGTGGGCGAGCGACAGCTGCATCAGGTGCGGTGC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS CCA 72 bp CCCGGGCTCCAGCCGTCCATCCCACCTCCACGTGGCTaGGGCTCGTCCCTGTCCCGGTGCGCACCGCACCTG +
Preference number: 6 (lower is better)
Translates to: PGLQPSIPPPRG*GSSLSRCAPHL
Trigger: CAGGTGCGGTGCGCACCGGGACAGGGACGAGCCCCAGCCACGTGGAGGTGGGATGGACGGCTGGAGCCCGGG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS TCA 72 bp GCTGGGGCTCGTCCCTGTCCCGGTGCGCACCGCACCTaGTGCAGCTGTCGCTCGCCCACCGCTGGAGCAGAG +
Preference number: 6 (lower is better)
Translates to: AGARPCPGAHRT*CSCRSPTAGAE
Trigger: CTCTGCTCCAGCGGTGGGCGAGCGACAGCTGCATCAGGTGCGGTGCGCACCGGGACAGGGACGAGCCCCAGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS GCA 72 bp CCACCTCCACGTGGCTGGGGCTCGTCCCTGTCCCGGTaGGCACCGCACCTGATGCAGCTGTCGCTCGCCCAC +
Preference number: 6 (lower is better)
Translates to: PPPRGWGSSLSR*APHLMQLSLAH
Trigger: GTGGGCGAGCGACAGCTGCATCAGGTGCGGTGCGCACCGGGACAGGGACGAGCCCCAGCCACGTGGAGGTGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS CAA 90 bp CCGCCGGCTCACGCGGAGGCTCTCGAGACTTCTGCAACTGGACAGTaGTATCCGAGGACTGGGAGGCCGTCCCTCTCTCGACTCCGTCGG +
Preference number: 6 (lower is better)
Translates to: PPAHAEALETSATGQ*YPRTGRPSLSRLRR
Trigger: CCGACGGAGTCGAGAGAGGGACGGCCTCCCAGTCCTCGGATACAACTGTCCAGTTGCAGAAGTCTCGAGAGCCTCCGCGTGAGCCGGCGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS CCA 72 bp TCCTTAAAGGGTCGTCCCGAGGACCCGCTGGGGTCATaGCAGATGGGAGGCAGGAGAGCGGCGGACGTAGCA +
Preference number: 6 (lower is better)
Translates to: SLKGRPEDPLGS*QMGGRRAADVA
Trigger: TGCTACGTCCGCCGCTCTCCTGCCTCCCATCTGCCATGACCCCAGCGGGTCCTCGGGACGACCCTTTAAGGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CCA 72 bp CCCGCCGCGTGCCCGAGTCAGGGGGTAGGTCGTGCATaGCCTGGATCAGCAGATAATAGGCCTCTCGCAACT +
Preference number: 6 (lower is better)
Translates to: PAACPSQGVGRA*PGSADNRPLAT
Trigger: AGTTGCGAGAGGCCTATTATCTGCTGATCCAGGCCATGCACGACCTACCCCCTGACTCGGGCACGCGGCGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS CCA 72 bp GCCGGCTCACGCGGAGGCTCTCGAGACTTCTGCAACTaGACAGTTGTATCCGAGGACTGGGAGGCCGTCCCT +
Preference number: 6 (lower is better)
Translates to: AGSRGGSRDFCN*TVVSEDWEAVP
Trigger: AGGGACGGCCTCCCAGTCCTCGGATACAACTGTCCAGTTGCAGAAGTCTCGAGAGCCTCCGCGTGAGCCGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS GCA 72 bp ATTTGGAGAGGTTGTCTGCGCTCCGGGAACTTTGGGTaGTGTCCCGCGATCGCGACCCTTCATCCCCAGGGA +
Preference number: 6 (lower is better)
Translates to: IWRGCLRSGNFG*CPAIATLHPQG
Trigger: TCCCTGGGGATGAAGGGTCGCGATCGCGGGACAGCACCCAAAGTTCCCGGAGCGCAGACAACCTCTCCAAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CCA 72 bp GTCACCGCAGGTGGCTTGAGGGGAAGATCCTCCGGATaGTCCTCTTGGCTGCTGGATATCACAGAGGTCCCC +
Preference number: 6 (lower is better)
Translates to: VTAGGLRGRSSG*SSWLLDITEVP
Trigger: GGGGACCTCTGTGATATCCAGCAGCCAAGAGGACCATCCGGAGGATCTTCCCCTCAAGCCACCTGCGGTGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 72 bp CACGCGGAGGCTCTCGAGACTTCTGCAACTGGACAGTaGTATCCGAGGACTGGGAGGCCGTCCCTCTCTCGA +
Preference number: 6 (lower is better)
Translates to: HAEALETSATGQ*YPRTGRPSLSR
Trigger: TCGAGAGAGGGACGGCCTCCCAGTCCTCGGATACAACTGTCCAGTTGCAGAAGTCTCGAGAGCCTCCGCGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039517.11
CDS CAA 72 bp CCCAAATTTGGAGAGGTTGTCTGCGCTCCGGGAACTTaGGGTGCTGTCCCGCGATCGCGACCCTTCATCCCC +
Preference number: 6 (lower is better)
Translates to: PKFGEVVCAPGT*GAVPRSRPFIP
Trigger: GGGGATGAAGGGTCGCGATCGCGGGACAGCACCCAAAGTTCCCGGAGCGCAGACAACCTCTCCAAATTTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 90 bp TTCCAACTGCCCAAATTTGGAGAGGTTGTCTGCGCTCCGGGAACTTaGGGTGCTGTCCCGCGATCGCGACCCTTCATCCCCAGGGACAGC +
Preference number: 6 (lower is better)
Translates to: FQLPKFGEVVCAPGT*GAVPRSRPFIPRDS
Trigger: GCTGTCCCTGGGGATGAAGGGTCGCGATCGCGGGACAGCACCCAAAGTTCCCGGAGCGCAGACAACCTCTCCAAATTTGGGCAGTTGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS TCA 72 bp AGCACACGCGGTTCCTCCTCGGCGTGGGCTCCCAGCTaGACACCACCAGCTTCAGATGCTGCGCATTTTCAA +
Preference number: 6 (lower is better)
Translates to: STRGSSSAWAPS*TPPASDAAHFQ
Trigger: TTGAAAATGCGCAGCATCTGAAGCTGGTGGTGTTCAGCTGGGAGCCCACGCCGAGGAGGAACCGCGTGTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS TCA 72 bp TCTCAACGTCCGGCAGGCAATCCAGGAGGTCCACAGTaGGCCTGGAGTCACTGGGCTCGTTCTCACAACCAC +
Preference number: 6 (lower is better)
Translates to: SQRPAGNPGGPQ*AWSHWARSHNH
Trigger: GTGGTTGTGAGAACGAGCCCAGTGACTCCAGGCTCACTGTGGACCTCCTGGATTGCCTGCCGGACGTTGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS GCA 72 bp GTAGCCCTGGCAGCATTACACACCGCATGTGTGCAGTaGGGCCTGTGGGATACCCAATGCTTGGGTGGAGAC +
Preference number: 6 (lower is better)
Translates to: VALAALHTACVQ*GLWDTQCLGGD
Trigger: GTCTCCACCCAAGCATTGGGTATCCCACAGGCCGCACTGCACACATGCGGTGTGTAATGCTGCCAGGGCTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CCA 72 bp GGTGGCTTGAGGGGAAGATCCTCCGGATGGTCCTCTTaGCTGCTGGATATCACAGAGGTCCCCACAGGATCC +
Preference number: 6 (lower is better)
Translates to: GGLRGRSSGWSS*LLDITEVPTGS
Trigger: GGATCCTGTGGGGACCTCTGTGATATCCAGCAGCCAAGAGGACCATCCGGAGGATCTTCCCCTCAAGCCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CCA 72 bp CCAAATTTGGAGAGGTTGTCTGCGCTCCGGGAACTTTaGGTGCTGTCCCGCGATCGCGACCCTTCATCCCCA +
Preference number: 6 (lower is better)
Translates to: PNLERLSALREL*VLSRDRDPSSP
Trigger: TGGGGATGAAGGGTCGCGATCGCGGGACAGCACCCAAAGTTCCCGGAGCGCAGACAACCTCTCCAAATTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 90 bp AGTCACCGCAGGTGGCTTGAGGGGAAGATCCTCCGGATGGTCCTCTaGGCTGCTGGATATCACAGAGGTCCCCACAGGATCCTTAAAGGG +
Preference number: 6 (lower is better)
Translates to: SHRRWLEGKILRMVL*AAGYHRGPHRILKG
Trigger: CCCTTTAAGGATCCTGTGGGGACCTCTGTGATATCCAGCAGCCAAGAGGACCATCCGGAGGATCTTCCCCTCAAGCCACCTGCGGTGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS GCA 72 bp GAGGCTCCGCCTTCATCAGATCTCTGGCAGACAACATaGTCACAGGAAGCTTCAGGGCGGCGGTGTTTGCCT +
Preference number: 6 (lower is better)
Translates to: EAPPSSDLWQTT*SQEASGRRCLP
Trigger: AGGCAAACACCGCCGCCCTGAAGCTTCCTGTGAGCATGTTGTCTGCCAGAGATCTGATGAAGGCGGAGCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 72 bp AGGTGGCTTGAGGGGAAGATCCTCCGGATGGTCCTCTaGGCTGCTGGATATCACAGAGGTCCCCACAGGATC +
Preference number: 6 (lower is better)
Translates to: RWLEGKILRMVL*AAGYHRGPHRI
Trigger: GATCCTGTGGGGACCTCTGTGATATCCAGCAGCCAAGAGGACCATCCGGAGGATCTTCCCCTCAAGCCACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 90 bp CCCAGGGACAGCAGACGTCCTTTGTACATCCACTTCTGCAGTTTCTaGACAGTCACCGCAGGTGGCTTGAGGGGAAGATCCTCCGGATGG +
Preference number: 6 (lower is better)
Translates to: PRDSRRPLYIHFCSF*TVTAGGLRGRSSGW
Trigger: CCATCCGGAGGATCTTCCCCTCAAGCCACCTGCGGTGACTGTCAAGAAACTGCAGAAGTGGATGTACAAAGGACGTCTGCTGTCCCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS GCA 72 bp TGCACTTTCCAACTGCCCAAATTTGGAGAGGTTGTCTaGGCTCCGGGAACTTTGGGTGCTGTCCCGCGATCG +
Preference number: 6 (lower is better)
Translates to: CTFQLPKFGEVV*APGTLGAVPRS
Trigger: CGATCGCGGGACAGCACCCAAAGTTCCCGGAGCGCAGACAACCTCTCCAAATTTGGGCAGTTGGAAAGTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 72 bp CACTTCTGCAGTTTCTTGACAGTCACCGCAGGTGGCTaGAGGGGAAGATCCTCCGGATGGTCCTCTTGGCTG +
Preference number: 6 (lower is better)
Translates to: HFCSFLTVTAGG*RGRSSGWSSWL
Trigger: CAGCCAAGAGGACCATCCGGAGGATCTTCCCCTCAAGCCACCTGCGGTGACTGTCAAGAAACTGCAGAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 90 bp CTCTGGCAGACAACATGCTCACAGGAAGCTTCAGGGCGGCGGTGTTaGCCTCCTCAAGACTCAAGACGTGTGCTATGCCCAAGCTGTCAT +
Preference number: 6 (lower is better)
Translates to: LWQTTCSQEASGRRC*PPQDSRRVLCPSCH
Trigger: ATGACAGCTTGGGCATAGCACACGTCTTGAGTCTTGAGGAGGCAAACACCGCCGCCCTGAAGCTTCCTGTGAGCATGTTGTCTGCCAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS TCA 72 bp CGATCCATGCTTGCTAGATCTAGTTCTCAGTTCGGGTaGGTCTCCGTCGCTGAGGTACCCACCCTTGCAGGA +
Preference number: 6 (lower is better)
Translates to: RSMLARSSSQFG*VSVAEVPTLAG
Trigger: TCCTGCAAGGGTGGGTACCTCAGCGACGGAGACTCACCCGAACTGAGAACTAGATCTAGCAAGCATGGATCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS GCA 72 bp CAACATGCTCACAGGAAGCTTCAGGGCGGCGGTGTTTaGCTCCTCAAGACTCAAGACGTGTGCTATGCCCAA +
Preference number: 6 (lower is better)
Translates to: QHAHRKLQGGGV*LLKTQDVCYAQ
Trigger: TTGGGCATAGCACACGTCTTGAGTCTTGAGGAGGCAAACACCGCCGCCCTGAAGCTTCCTGTGAGCATGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CCA 72 bp GGGGTTTCTTCCGGTAGCTGTGCCGAGAGGATACGGTaGTATCAAGATGGTACCGGCTTATCACGTTCCTGG +
Preference number: 6 (lower is better)
Translates to: GVSSGSCAERIR*YQDGTGLSRSW
Trigger: CCAGGAACGTGATAAGCCGGTACCATCTTGATACCACCGTATCCTCTCGGCACAGCTACCGGAAGAAACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS GCA 72 bp CGGTGTTTGCCTCCTCAAGACTCAAGACGTGTGCTATaGCCAAGCTGTCATCCTCAGGGATGGGATTGTACC +
Preference number: 6 (lower is better)
Translates to: RCLPPQDSRRVL*PSCHPQGWDCT
Trigger: GGTACAATCCCATCCCTGAGGATGACAGCTTGGGCATAGCACACGTCTTGAGTCTTGAGGAGGCAAACACCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS GCA 72 bp GGCGTGGGCTCCCAGCTGAACACCACCAGCTTCAGATaGTGCGCATTTTCAATCTCTATGTTGAACGTGTGG +
Preference number: 6 (lower is better)
Translates to: GVGSQLNTTSFR*CAFSISMLNVW
Trigger: CCACACGTTCAACATAGAGATTGAAAATGCGCAGCATCTGAAGCTGGTGGTGTTCAGCTGGGAGCCCACGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 72 bp TCGCGACCCTTCATCCCCAGGGACAGCAGACGTCCTTaGTACATCCACTTCTGCAGTTTCTTGACAGTCACC +
Preference number: 6 (lower is better)
Translates to: SRPFIPRDSRRP*YIHFCSFLTVT
Trigger: GGTGACTGTCAAGAAACTGCAGAAGTGGATGTACAAAGGACGTCTGCTGTCCCTGGGGATGAAGGGTCGCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 72 bp TTTCATGCACTTTCCAACTGCCCAAATTTGGAGAGGTaGTCTGCGCTCCGGGAACTTTGGGTGCTGTCCCGC +
Preference number: 6 (lower is better)
Translates to: FHALSNCPNLER*SALRELWVLSR
Trigger: GCGGGACAGCACCCAAAGTTCCCGGAGCGCAGACAACCTCTCCAAATTTGGGCAGTTGGAAAGTGCATGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 90 bp GGGACAGTTTCTCTCCCTTTCCCAAGTTTGTGCTCCGATCCATGCTaGCTAGATCTAGTTCTCAGTTCGGGTGAGTCTCCGTCGCTGAGG +
Preference number: 6 (lower is better)
Translates to: GTVSLPFPSLCSDPC*LDLVLSSGESPSLR
Trigger: CCTCAGCGACGGAGACTCACCCGAACTGAGAACTAGATCTAGCAAGCATGGATCGGAGCACAAACTTGGGAAAGGGAGAGAAACTGTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS GCA 72 bp GTGGGCTCCCAGCTGAACACCACCAGCTTCAGATGCTaGGCATTTTCAATCTCTATGTTGAACGTGTGGTCC +
Preference number: 6 (lower is better)
Translates to: VGSQLNTTSFRC*AFSISMLNVWS
Trigger: GGACCACACGTTCAACATAGAGATTGAAAATGCGCAGCATCTGAAGCTGGTGGTGTTCAGCTGGGAGCCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS GCA 72 bp CACCAGTTTCAGATGATCCAACAACATCTTCAGGGTTaGCTTCTCAACGTCCGGCAGGCAATCCAGGAGGTC +
Preference number: 6 (lower is better)
Translates to: HQFQMIQQHLQG*LLNVRQAIQEV
Trigger: GACCTCCTGGATTGCCTGCCGGACGTTGAGAAGGCAACCCTGAAGATGTTGTTGGATCATCTGAAACTGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CCA 72 bp GACGTGGTTTTCATGCACTTTCCAACTGCCCAAATTTaGAGAGGTTGTCTGCGCTCCGGGAACTTTGGGTGC +
Preference number: 6 (lower is better)
Translates to: DVVFMHFPTAQI*RGCLRSGNFGC
Trigger: GCACCCAAAGTTCCCGGAGCGCAGACAACCTCTCCAAATTTGGGCAGTTGGAAAGTGCATGAAAACCACGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 72 bp AGCAGACGTCCTTTGTACATCCACTTCTGCAGTTTCTaGACAGTCACCGCAGGTGGCTTGAGGGGAAGATCC +
Preference number: 6 (lower is better)
Translates to: SRRPLYIHFCSF*TVTAGGLRGRS
Trigger: GGATCTTCCCCTCAAGCCACCTGCGGTGACTGTCAAGAAACTGCAGAAGTGGATGTACAAAGGACGTCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 72 bp GGACGTGGTTTTCATGCACTTTCCAACTGCCCAAATTaGGAGAGGTTGTCTGCGCTCCGGGAACTTTGGGTG +
Preference number: 6 (lower is better)
Translates to: GRGFHALSNCPN*ERLSALRELWV
Trigger: CACCCAAAGTTCCCGGAGCGCAGACAACCTCTCCAAATTTGGGCAGTTGGAAAGTGCATGAAAACCACGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 90 bp GACATGGGGATTCGTTGTGCGGTCATGACTTCCGCTCCGGCTGTTTaGCTATACTGTCTACTTTCTCCACCTTCTAAGGGGCCGTCATCA +
Preference number: 6 (lower is better)
Translates to: DMGIRCAVMTSAPAV*LYCLLSPPSKGPSS
Trigger: TGATGACGGCCCCTTAGAAGGTGGAGAAAGTAGACAGTATAGCAAAACAGCCGGAGCGGAAGTCATGACCGCACAACGAATCCCCATGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS TCA 72 bp CCGACAGGTGAGCAGGGCCGTTCTGGCTTTGTTCACTaGGTCTACCTGAATGGCACAAAACACATCTTTCGA +
Preference number: 6 (lower is better)
Translates to: PTGEQGRSGFVH*VYLNGTKHIFR
Trigger: TCGAAAGATGTGTTTTGTGCCATTCAGGTAGACTCAGTGAACAAAGCCAGAACGGCCCTGCTCACCTGTCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS GCA 72 bp TTCGCTTGCTCTCGTCCAGACTCTGAGACCTCAGGGTaGTCTGATACAGCCAATTGCGCTTCTTTGAAACTG +
Preference number: 6 (lower is better)
Translates to: FACSRPDSETSG*SDTANCASLKL
Trigger: CAGTTTCAAAGAAGCGCAATTGGCTGTATCAGAGCACCCTGAGGTCTCAGAGTCTGGACGAGAGCAAGCGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS GCA 72 bp CTCTTCGCCATGGCATCCAACACAGCCTCATACAGCTaGTTGGTTATTAGGGGAGAAGGGAGTTCTCTCAAG +
Preference number: 6 (lower is better)
Translates to: LFAMASNTASYS*LVIRGEGSSLK
Trigger: CTTGAGAGAACTCCCTTCTCCCCTAATAACCAAGCAGCTGTATGAGGCTGTGTTGGATGCCATGGCGAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CCA 72 bp GGGCCGTTCTGGCTTTGTTCACTGAGTCTACCTGAATaGCACAAAACACATCTTTCGAATCTATCCGGGGCG +
Preference number: 6 (lower is better)
Translates to: GPFWLCSLSLPE*HKTHLSNLSGA
Trigger: CGCCCCGGATAGATTCGAAAGATGTGTTTTGTGCCATTCAGGTAGACTCAGTGAACAAAGCCAGAACGGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 72 bp TCTCTCCCTTTCCCAAGTTTGTGCTCCGATCCATGCTaGCTAGATCTAGTTCTCAGTTCGGGTGAGTCTCCG +
Preference number: 6 (lower is better)
Translates to: SLPFPSLCSDPC*LDLVLSSGESP
Trigger: CGGAGACTCACCCGAACTGAGAACTAGATCTAGCAAGCATGGATCGGAGCACAAACTTGGGAAAGGGAGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 72 bp GCTCATGAGGCCGGATATGTACTGCGAGCATTTGGGTaGATCCGCAAAGCTGTAATGTCTGAAGGCACCGAT +
Preference number: 6 (lower is better)
Translates to: AHEAGYVLRAFG*IRKAVMSEGTD
Trigger: ATCGGTGCCTTCAGACATTACAGCTTTGCGGATCAACCCAAATGCTCGCAGTACATATCCGGCCTCATGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 90 bp TCAGGGATGGGATTGTACCATATTTCTCCTTCATCGTCCGCATCATaGTCCTCGCTAAAGGCTGAAGAGCCGTTTCTGGACAACGTAGCC +
Preference number: 6 (lower is better)
Translates to: SGMGLYHISPSSSAS*SSLKAEEPFLDNVA
Trigger: GGCTACGTTGTCCAGAAACGGCTCTTCAGCCTTTAGCGAGGACAATGATGCGGACGATGAAGGAGAAATATGGTACAATCCCATCCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS TCA 72 bp CCTCAGGGTGCTCTGATACAGCCAATTGCGCTTCTTTaGAACTGTGATGTTGTTAAGGGGCTGGTGACCTCT +
Preference number: 6 (lower is better)
Translates to: PQGALIQPIALL*NCDVVKGLVTS
Trigger: AGAGGTCACCAGCCCCTTAACAACATCACAGTTTCAAAGAAGCGCAATTGGCTGTATCAGAGCACCCTGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS TCA 72 bp GCCGCTGAACCACACAATCGATACAGGCCTACAACCTaGCAACCCCTCTTTTCAATCTCCACGATGCATTTC +
Preference number: 6 (lower is better)
Translates to: AAEPHNRYRPTT*QPLFSISTMHF
Trigger: GAAATGCATCGTGGAGATTGAAAAGAGGGGTTGTCAGGTTGTAGGCCTGTATCGATTGTGTGGTTCAGCGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS TCA 72 bp CTCTTCAGAATCGGTGAAGACTCTGTTGTTGTGGGTTaGAGCCTCTTGCCTCTGGTTAAGCAACACTGGTCC +
Preference number: 6 (lower is better)
Translates to: LFRIGEDSVVVG*SLLPLVKQHWS
Trigger: GGACCAGTGTTGCTTAACCAGAGGCAAGAGGCTTCAACCCACAACAACAGAGTCTTCACCGATTCTGAAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS GCA 72 bp TCGGTGAAGACTCTGTTGTTGTGGGTTGAAGCCTCTTaGCTCTGGTTAAGCAACACTGGTCCAAAGCACACA +
Preference number: 6 (lower is better)
Translates to: SVKTLLLWVEAS*LWLSNTGPKHT
Trigger: TGTGTGCTTTGGACCAGTGTTGCTTAACCAGAGGCAAGAGGCTTCAACCCACAACAACAGAGTCTTCACCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CCA 72 bp TCGCCATGGCATCCAACACAGCCTCATACAGCTGCTTaGTTATTAGGGGAGAAGGGAGTTCTCTCAAGTAGT +
Preference number: 6 (lower is better)
Translates to: SPWHPTQPHTAA*LLGEKGVLSSS
Trigger: ACTACTTGAGAGAACTCCCTTCTCCCCTAATAACCAAGCAGCTGTATGAGGCTGTGTTGGATGCCATGGCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 72 bp ATTCGTTGTGCGGTCATGACTTCCGCTCCGGCTGTTTaGCTATACTGTCTACTTTCTCCACCTTCTAAGGGG +
Preference number: 6 (lower is better)
Translates to: IRCAVMTSAPAV*LYCLLSPPSKG
Trigger: CCCCTTAGAAGGTGGAGAAAGTAGACAGTATAGCAAAACAGCCGGAGCGGAAGTCATGACCGCACAACGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 90 bp CAGCAGCGGCACCATCAAGCCTACGTTTTCTTTCTCTACAACTTTTaGAATGTCGACTCCGAACATCACCGCTTCGCGGTTCTTATCCAG +
Preference number: 6 (lower is better)
Translates to: QQRHHQAYVFFLYNF*NVDSEHHRFAVLIQ
Trigger: CTGGATAAGAACCGCGAAGCGGTGATGTTCGGAGTCGACATTCAAAAAGTTGTAGAGAAAGAAAACGTAGGCTTGATGGTGCCGCTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS GCA 72 bp GTTTCTCTCCCTTTCCCAAGTTTGTGCTCCGATCCATaGTTGCTAGATCTAGTTCTCAGTTCGGGTGAGTCT +
Preference number: 6 (lower is better)
Translates to: VSLPFPSLCSDP*LLDLVLSSGES
Trigger: AGACTCACCCGAACTGAGAACTAGATCTAGCAAGCATGGATCGGAGCACAAACTTGGGAAAGGGAGAGAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS GCA 72 bp CTGCTTGGGACAGTTTCTCTCCCTTTCCCAAGTTTGTaGTCCGATCCATGCTTGCTAGATCTAGTTCTCAGT +
Preference number: 6 (lower is better)
Translates to: LLGTVSLPFPSL*SDPCLLDLVLS
Trigger: ACTGAGAACTAGATCTAGCAAGCATGGATCGGAGCACAAACTTGGGAAAGGGAGAGAAACTGTCCCAAGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS GCA 72 bp CTACAACCTGACAACCCCTCTTTTCAATCTCCACGATaGATTTCTGTATCAGCAGCGGCACCATCAAGCCTA +
Preference number: 6 (lower is better)
Translates to: LQPDNPSFQSPR*ISVSAAAPSSL
Trigger: TAGGCTTGATGGTGCCGCTGCTGATACAGAAATGCATCGTGGAGATTGAAAAGAGGGGTTGTCAGGTTGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CCA 72 bp AGATGCTGCGCATTTTCAATCTCTATGTTGAACGTGTaGTCCATGTCTAAGAAGGTCGTCCGACAGGTGAGC +
Preference number: 6 (lower is better)
Translates to: RCCAFSISMLNV*SMSKKVVRQVS
Trigger: GCTCACCTGTCGGACGACCTTCTTAGACATGGACCACACGTTCAACATAGAGATTGAAAATGCGCAGCATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CCA 72 bp AACCACTGGACGACATTTTCAAAGGACTCTTCGCCATaGCATCCAACACAGCCTCATACAGCTGCTTGGTTA +
Preference number: 6 (lower is better)
Translates to: NHWTTFSKDSSP*HPTQPHTAAWL
Trigger: TAACCAAGCAGCTGTATGAGGCTGTGTTGGATGCCATGGCGAAGAGTCCTTTGAAAATGTCGTCCAGTGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 72 bp GGATTGTACCATATTTCTCCTTCATCGTCCGCATCATaGTCCTCGCTAAAGGCTGAAGAGCCGTTTCTGGAC +
Preference number: 6 (lower is better)
Translates to: GLYHISPSSSAS*SSLKAEEPFLD
Trigger: GTCCAGAAACGGCTCTTCAGCCTTTAGCGAGGACAATGATGCGGACGATGAAGGAGAAATATGGTACAATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 90 bp TCCTCTGCCGTCGGGCTTTCTTGTGTCCTGTGCCCTAACCTTTGTTaGCAGTGCTGCATAATTTCTGTAGAATGCATGGAATCTGCAGAA +
Preference number: 6 (lower is better)
Translates to: SSAVGLSCVLCPNLC*QCCIISVECMESAE
Trigger: TTCTGCAGATTCCATGCATTCTACAGAAATTATGCAGCACTGCAAACAAAGGTTAGGGCACAGGACACAAGAAAGCCCGACGGCAGAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS TCA 72 bp GAGAGCCATAGACATTCTCAAATAAGTCTGTCAGTGTaGTTCTTTGGTCCGTTGTCACCGAGAGGACGTGGT +
Preference number: 6 (lower is better)
Translates to: ESHRHSQISLSV*FFGPLSPRGRG
Trigger: ACCACGTCCTCTCGGTGACAACGGACCAAAGAATCACACTGACAGACTTATTTGAGAATGTCTATGGCTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
CDS TCA 72 bp GTTTTAAACCCTCAGCTCCATAGAAGTGTACGCTCATaGGGCCGGATATGTACTGCGAGCATTTGGGTTGAT +
Preference number: 6 (lower is better)
Translates to: VLNPQLHRSVRS*GRICTASIWVD
Trigger: ATCAACCCAAATGCTCGCAGTACATATCCGGCCTCATGAGCGTACACTTCTATGGAGCTGAGGGTTTAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS TCA 72 bp AGCCATAGACATTCTCAAATAAGTCTGCTGTCAGTGTaGTTCTTTGGTCCGTTGTCACCGAGAGGACGTGGT +
Preference number: 6 (lower is better)
Translates to: SHRHSQISLLSV*FFGPLSPRGRG
Trigger: ACCACGTCCTCTCGGTGACAACGGACCAAAGAATCACACTGACAGCAGACTTATTTGAGAATGTCTATGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212479.2
CDS CCA 72 bp AGTGTGATTCTTTGGTCCGTTGTCACCGAGAGGACGTaGTTTTCATGCACTTTCCAACTGCCCAAATTTGGA +
Preference number: 6 (lower is better)
Translates to: SVILWSVVTERT*FSCTFQLPKFG
Trigger: TCCAAATTTGGGCAGTTGGAAAGTGCATGAAAACCACGTCCTCTCGGTGACAACGGACCAAAGAATCACACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS TCA 72 bp TCAATGCTCTCTTGCAAATCTCTGAGGTTAGCTTTCTaGTCCACCGTGGATTCAATGGTCTGTACCGTCAAG +
Preference number: 6 (lower is better)
Translates to: SMLSCKSLRLAF*STVDSMVCTVK
Trigger: CTTGACGGTACAGACCATTGAATCCACGGTGGATCAGAAAGCTAACCTCAGAGATTTGCAAGAGAGCATTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 72 bp GTCGGGCTTTCTTGTGTCCTGTGCCCTAACCTTTGTTaGCAGTGCTGCATAATTTCTGTAGAATGCATGGAA +
Preference number: 6 (lower is better)
Translates to: VGLSCVLCPNLC*QCCIISVECME
Trigger: TTCCATGCATTCTACAGAAATTATGCAGCACTGCAAACAAAGGTTAGGGCACAGGACACAAGAAAGCCCGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2
CDS CAA 90 bp GTTGAGCTCACGTTCCAGATTGCCAATCAAAGTATCAATGCTCTCTaGCAAATCTCTGAGGTTAGCTTTCTGATCCACCGTGGATTCAAT +
Preference number: 6 (lower is better)
Translates to: VELTFQIANQSINAL*QISEVSFLIHRGFN
Trigger: ATTGAATCCACGGTGGATCAGAAAGCTAACCTCAGAGATTTGCAAGAGAGCATTGATACTTTGATTGGCAATCTGGAACGTGAGCTCAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039517.11
ENSMUST00000200546.2
ENSMUST00000212479.2