Pregenerated sensors for SYCP3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020059Ensembl transcript IDs: ENSMUST00000020252.10, ENSMUST00000123244.8, ENSMUST00000125612.2
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TTTTCTCCTTGTTCCTCAAATTTCTGTATATCCAGTTCCCACTGCTGCAACACACCATCTTTAGATGTTTaGTCAGCGGCTCCGGTGAGC | + |
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Preference number: 4 (lower is better) Translates to: FSPCSSNFCISSSHCCNTPSLDV*SAAPVS Trigger: GCTCACCGGAGCCGCTGAGCAAACATCTAAAGATGG...TGTGTTGCAGCAGTGGGAACTGGATATACAGAAATTTGAGGAACAAGGAGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123244.8 |
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| CDS-3UTR GCA 90 bp | TTTTCTCCTTGTTCCTCAAATTTCTGTATATCCAGTTCCCACTGCTGCAACACACCAGATTTCCCAGAATaGTTTCTTCCACCAGGCACC | + |
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Preference number: 4 (lower is better) Translates to: FSPCSSNFCISSSHCCNTPDFPE*FLPPGT Trigger: GGTGCCTGGTGGAAGAAAGCATTCTGGGAAATCTGG...TGTGTTGCAGCAGTGGGAACTGGATATACAGAAATTTGAGGAACAAGGAGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123244.8 |
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| CDS-3UTR CCA 90 bp | TTTTCTCCTTGTTCCTCAAATTTCTGTATATCCAGTTCCCACTGCTGCAACACACTGATCAACCAAAGGTaGCTTCCCAGATTTCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: FSPCSSNFCISSSHCCNTLINQR*LPRFPR Trigger: TCTGGGAAATCTGGGAAGCCACCTTTGGTTGATCAG...TGTGTTGCAGCAGTGGGAACTGGATATACAGAAATTTGAGGAACAAGGAGAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123244.8 |
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| CDS-3UTR CCA 90 bp | TTTTCTCCTTGTTCCTCAAATTTCTGTATATCCAGTTCCCACTGCTGCAACACAATGTTTATCAATTACTaGAGCCTTTTCATCAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: FSPCSSNFCISSSHCCNTMFINY*SLFISN Trigger: GTTGCTGATGAAAAGGCTCCAGTAATTGATAAACAT...TGTGTTGCAGCAGTGGGAACTGGATATACAGAAATTTGAGGAACAAGGAGAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123244.8 |
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| CDS GCA 90 bp | ATTTCCCAGAATGCTTTCTTCCACCAGGCACCATCTTTAGATGTTTaGTCAGCGGCTCCGGTGAGCTGTCGCTGTCCCCACACCCTCGAA | + |
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Preference number: 5 (lower is better) Translates to: ISQNAFFHQAPSLDV*SAAPVSCRCPHTLE Trigger: TTCGAGGGTGTGGGGACAGCGACAGCTCACCGGAGCCGCTGAGCAAACATCTAAAGATGGTGCCTGGTGGAAGAAAGCATTCTGGGAAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020252.10 ENSMUST00000123244.8 ENSMUST00000125612.2 |
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| CDS-3UTR CAA 90 bp | TTTTCTCCTTGTTCCTCAAATTTCTGTATATCCAGTTCCCACTGCTGCAACACAACCATCTTTAGATGTTaGCTCAGCGGCTCCGGTGAG | + |
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Preference number: 5 (lower is better) Translates to: FSPCSSNFCISSSHCCNTTIFRC*LSGSGE Trigger: CTCACCGGAGCCGCTGAGCAAACATCTAAAGATGGT...TGTGTTGCAGCAGTGGGAACTGGATATACAGAAATTTGAGGAACAAGGAGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123244.8 |
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| CDS TCA 90 bp | ATGTTTATCAATTACTGGAGCCTTTTCATCAGCAACATCTTCTTCTaGACCAGACAGATCTTTATCATCTTTCTCAAAGTCAAAGGCTTT | + |
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Preference number: 5 (lower is better) Translates to: MFINYWSLFISNIFF*TRQIFIIFLKVKGF Trigger: AAAGCCTTTGACTTTGAGAAAGATGATAAAGATCTGTCTGGTTCAGAAGAAGATGTTGCTGATGAAAAGGCTCCAGTAATTGATAAACAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020252.10 ENSMUST00000123244.8 ENSMUST00000125612.2 |
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| CDS CAA 90 bp | GATTTCCCAGAATGCTTTCTTCCACCAGGCACCATCTTTAGATGTTaGCTCAGCGGCTCCGGTGAGCTGTCGCTGTCCCCACACCCTCGA | + |
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Preference number: 6 (lower is better) Translates to: DFPECFLPPGTIFRC*LSGSGELSLSPHPR Trigger: TCGAGGGTGTGGGGACAGCGACAGCTCACCGGAGCCGCTGAGCAAACATCTAAAGATGGTGCCTGGTGGAAGAAAGCATTCTGGGAAATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020252.10 ENSMUST00000123244.8 ENSMUST00000125612.2 |
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| CDS GCA 72 bp | AATGCTTTCTTCCACCAGGCACCATCTTTAGATGTTTaGTCAGCGGCTCCGGTGAGCTGTCGCTGTCCCCAC | + |
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Preference number: 6 (lower is better) Translates to: NAFFHQAPSLDV*SAAPVSCRCPH Trigger: GTGGGGACAGCGACAGCTCACCGGAGCCGCTGAGCAAACATCTAAAGATGGTGCCTGGTGGAAGAAAGCATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020252.10 ENSMUST00000123244.8 ENSMUST00000125612.2 |
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| CDS CAA 72 bp | GAATGCTTTCTTCCACCAGGCACCATCTTTAGATGTTaGCTCAGCGGCTCCGGTGAGCTGTCGCTGTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: ECFLPPGTIFRC*LSGSGELSLSP Trigger: TGGGGACAGCGACAGCTCACCGGAGCCGCTGAGCAAACATCTAAAGATGGTGCCTGGTGGAAGAAAGCATTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020252.10 ENSMUST00000123244.8 ENSMUST00000125612.2 |
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| CDS TCA 72 bp | AATTACTGGAGCCTTTTCATCAGCAACATCTTCTTCTaGACCAGACAGATCTTTATCATCTTTCTCAAAGTC | + |
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Preference number: 6 (lower is better) Translates to: NYWSLFISNIFF*TRQIFIIFLKV Trigger: GACTTTGAGAAAGATGATAAAGATCTGTCTGGTTCAGAAGAAGATGTTGCTGATGAAAAGGCTCCAGTAATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020252.10 ENSMUST00000123244.8 ENSMUST00000125612.2 |
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