RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SYCP2L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038651

Ensembl transcript IDs: ENSMUST00000124093.3, ENSMUST00000141292.9

Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CATGGCAAGGTCATTCCTCTGCCTTCCCACAGACATTCGACACAGTaGCTCAGAGAGCGCCACCTGCTGGCTATAGTCGCCCACAGTCAA +
Preference number: 5 (lower is better)
Translates to: HGKVIPLPSHRHSTQ*LRERHLLAIVAHSQ
Trigger: TTGACTGTGGGCGACTATAGCCAGCAGGTGGCGCTCTCTGAGGCACTGTGTCGAATGTCTGTGGGAAGGCAGAGGAATGACCTTGCCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS GCA 90 bp GAGCGCCACCTGCTGGCTATAGTCGCCCACAGTCAAGATCGTCCTTaGCAATTCTTTCATAAGACAGCATGCGCCTTCTGCCGAAGAGAG +
Preference number: 5 (lower is better)
Translates to: ERHLLAIVAHSQDRP*QFFHKTACAFCRRE
Trigger: CTCTCTTCGGCAGAAGGCGCATGCTGTCTTATGAAAGAATTGGCAAGGACGATCTTGACTGTGGGCGACTATAGCCAGCAGGTGGCGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS GCA 90 bp GTGTCTGTCACGACGGGGGATCCCGGAGCATCTTCTAATCTTGATTaGTTTAGGGCAGCAACACTCCCATCGGGTATCTCTCTGTGTCCC +
Preference number: 5 (lower is better)
Translates to: VSVTTGDPGASSNLD*FRAATLPSGISLCP
Trigger: GGGACACAGAGAGATACCCGATGGGAGTGTTGCTGCCCTAAAGCAATCAAGATTAGAAGATGCTCCGGGATCCCCCGTCGTGACAGACAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000124093.3
ENSMUST00000141292.9
CDS GCA 90 bp GCATGCGCCTTCTGCCGAAGAGAGCTTTCTTCTTTCTTCCTGGGGTaGAGCGTTCAAAATGCAGTTCAAAGTCGCCAGAGTCTCCTGCTG +
Preference number: 5 (lower is better)
Translates to: ACAFCRRELSSFFLG*SVQNAVQSRQSLLL
Trigger: CAGCAGGAGACTCTGGCGACTTTGAACTGCATTTTGAACGCTGCACCCCAGGAAGAAAGAAGAAAGCTCTCTTCGGCAGAAGGCGCATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS TCA 90 bp AACAGCAAACTTGCCAGAGCATCCTTCTCGAGGCATTTCAGTGTCTaGAGATTCTTCTCCAAGCCGCTCAGCTCCCGAAGGACAGAGCTG +
Preference number: 5 (lower is better)
Translates to: NSKLARASFSRHFSV*RFFSKPLSSRRTEL
Trigger: CAGCTCTGTCCTTCGGGAGCTGAGCGGCTTGGAGAAGAATCTTCAGACACTGAAATGCCTCGAGAAGGATGCTCTGGCAAGTTTGCTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CCA 90 bp AGACAGCATGCGCCTTCTGCCGAAGAGAGCTTTCTTCTTTCTTCCTaGGGTGCAGCGTTCAAAATGCAGTTCAAAGTCGCCAGAGTCTCC +
Preference number: 5 (lower is better)
Translates to: RQHAPSAEESFLLSS*GAAFKMQFKVARVS
Trigger: GGAGACTCTGGCGACTTTGAACTGCATTTTGAACGCTGCACCCCAGGAAGAAAGAAGAAAGCTCTCTTCGGCAGAAGGCGCATGCTGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS TCA 90 bp GGTGCAGCGTTCAAAATGCAGTTCAAAGTCGCCAGAGTCTCCTGCTaGATGGAGGGCTTCACGGAATCTTCTGCCACCAGGAATCCTAAA +
Preference number: 5 (lower is better)
Translates to: GAAFKMQFKVARVSC*MEGFTESSATRNPK
Trigger: TTTAGGATTCCTGGTGGCAGAAGATTCCGTGAAGCCCTCCATTCAGCAGGAGACTCTGGCGACTTTGAACTGCATTTTGAACGCTGCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS GCA 90 bp CCGAAGAGAGCTTTCTTCTTTCTTCCTGGGGTGCAGCGTTCAAAATaGAGTTCAAAGTCGCCAGAGTCTCCTGCTGAATGGAGGGCTTCA +
Preference number: 5 (lower is better)
Translates to: PKRAFFFLPGVQRSK*SSKSPESPAEWRAS
Trigger: TGAAGCCCTCCATTCAGCAGGAGACTCTGGCGACTTTGAACTGCATTTTGAACGCTGCACCCCAGGAAGAAAGAAGAAAGCTCTCTTCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS GCA 90 bp GCCCACAGTCAAGATCGTCCTTGCCAATTCTTTCATAAGACAGCATaGGCCTTCTGCCGAAGAGAGCTTTCTTCTTTCTTCCTGGGGTGC +
Preference number: 5 (lower is better)
Translates to: AHSQDRPCQFFHKTA*AFCRRELSSFFLGC
Trigger: GCACCCCAGGAAGAAAGAAGAAAGCTCTCTTCGGCAGAAGGCGCATGCTGTCTTATGAAAGAATTGGCAAGGACGATCTTGACTGTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CCA 90 bp CTTTGGGATCAGTCCTTGCTGGATAAGCAAAGGTTCCTCGTGGTCTaGGTCATCCCTGAAGAATCTCTGGATACATTTCAGCAGCAGGGA +
Preference number: 5 (lower is better)
Translates to: LWDQSLLDKQRFLVV*VIPEESLDTFQQQG
Trigger: TCCCTGCTGCTGAAATGTATCCAGAGATTCTTCAGGGATGACCCAGACCACGAGGAACCTTTGCTTATCCAGCAAGGACTGATCCCAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CCA 90 bp CAGCGTTCAAAATGCAGTTCAAAGTCGCCAGAGTCTCCTGCTGAATaGAGGGCTTCACGGAATCTTCTGCCACCAGGAATCCTAAACGAA +
Preference number: 5 (lower is better)
Translates to: QRSKCSSKSPESPAE*RASRNLLPPGILNE
Trigger: TTCGTTTAGGATTCCTGGTGGCAGAAGATTCCGTGAAGCCCTCCATTCAGCAGGAGACTCTGGCGACTTTGAACTGCATTTTGAACGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS TCA 90 bp AGGGCTTCACGGAATCTTCTGCCACCAGGAATCCTAAACGAAGTATaGAGGAATCCAACATCTGGACTGTCGCTTTCCTGCTATGTCTGG +
Preference number: 5 (lower is better)
Translates to: RASRNLLPPGILNEV*RNPTSGLSLSCYVW
Trigger: CCAGACATAGCAGGAAAGCGACAGTCCAGATGTTGGATTCCTTCATACTTCGTTTAGGATTCCTGGTGGCAGAAGATTCCGTGAAGCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS TCA 90 bp CAGGCCGTCTGTTACTCTCGTCTTCTTTGTGGAGGAGCTGGGTTCTaGGCCTCTTCGTTCAGGTTTCTCAAGTCCTATTTTCTGTGTAGA +
Preference number: 5 (lower is better)
Translates to: QAVCYSRLLCGGAGF*ASSFRFLKSYFLCR
Trigger: TCTACACAGAAAATAGGACTTGAGAAACCTGAACGAAGAGGCTCAGAACCCAGCTCCTCCACAAAGAAGACGAGAGTAACAGACGGCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS GCA 90 bp CAAGATCGTCCTTGCCAATTCTTTCATAAGACAGCATGCGCCTTCTaGCGAAGAGAGCTTTCTTCTTTCTTCCTGGGGTGCAGCGTTCAA +
Preference number: 5 (lower is better)
Translates to: QDRPCQFFHKTACAF*RRELSSFFLGCSVQ
Trigger: TTGAACGCTGCACCCCAGGAAGAAAGAAGAAAGCTCTCTTCGGCAGAAGGCGCATGCTGTCTTATGAAAGAATTGGCAAGGACGATCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS GCA 90 bp ACACTCCCATCGGGTATCTCTCTGTGTCCCAAGTTTTCTAGCTTGTaGTTGAAGCTGCTGTTCCCCATGAATGACTCTCGGTTCACAATC +
Preference number: 5 (lower is better)
Translates to: TLPSGISLCPKFSSL*LKLLFPMNDSRFTI
Trigger: GATTGTGAACCGAGAGTCATTCATGGGGAACAGCAGCTTCAAGCACAAGCTAGAAAACTTGGGACACAGAGAGATACCCGATGGGAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000124093.3
ENSMUST00000141292.9
CDS GCA 90 bp CTTCTGATTGGGGAGAGTGGTAGGATCCGTAGGGAACTGACTCTCTaGTTCTTCCTCTGGGAATATGTTCTTAGGGATTTCCTTTTGTGG +
Preference number: 5 (lower is better)
Translates to: LLIGESGRIRRELTL*FFLWEYVLRDFLLW
Trigger: CCACAAAAGGAAATCCCTAAGAACATATTCCCAGAGGAAGAAGCAGAGAGTCAGTTCCCTACGGATCCTACCACTCTCCCCAATCAGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000124093.3
ENSMUST00000141292.9
CDS CCA 90 bp TCTGCCACCAGGAATCCTAAACGAAGTATGAAGGAATCCAACATCTaGACTGTCGCTTTCCTGCTATGTCTGGAAATGATCAGTGCCGTG +
Preference number: 5 (lower is better)
Translates to: SATRNPKRSMKESNI*TVAFLLCLEMISAV
Trigger: CACGGCACTGATCATTTCCAGACATAGCAGGAAAGCGACAGTCCAGATGTTGGATTCCTTCATACTTCGTTTAGGATTCCTGGTGGCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CCA 90 bp TTTAAAAGCAGAACCATTTACACTTCCTGGCATGTCTTCTTGAGATaGAGTAGAAGTGTCTGTCACGACGGGGGATCCCGGAGCATCTTC +
Preference number: 5 (lower is better)
Translates to: FKSRTIYTSWHVFLR*SRSVCHDGGSRSIF
Trigger: GAAGATGCTCCGGGATCCCCCGTCGTGACAGACACTTCTACTCCATCTCAAGAAGACATGCCAGGAAGTGTAAATGGTTCTGCTTTTAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS GCA 90 bp CCTGTTATTATTTCAAACCAGGAAACCATCTTTGGGATCAGTCCTTaGTGGATAAGCAAAGGTTCCTCGTGGTCTGGGTCATCCCTGAAG +
Preference number: 5 (lower is better)
Translates to: PVIISNQETIFGISP*WISKGSSWSGSSLK
Trigger: CTTCAGGGATGACCCAGACCACGAGGAACCTTTGCTTATCCAGCAAGGACTGATCCCAAAGATGGTTTCCTGGTTTGAAATAATAACAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CCA 90 bp ATAAGCAAAGGTTCCTCGTGGTCTGGGTCATCCCTGAAGAATCTCTaGATACATTTCAGCAGCAGGGAACAATTCTGGAACTCGTTCTTA +
Preference number: 5 (lower is better)
Translates to: ISKGSSWSGSSLKNL*IHFSSREQFWNSFL
Trigger: TAAGAACGAGTTCCAGAATTGTTCCCTGCTGCTGAAATGTATCCAGAGATTCTTCAGGGATGACCCAGACCACGAGGAACCTTTGCTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CCA 90 bp GTTATTATTTCAAACCAGGAAACCATCTTTGGGATCAGTCCTTGCTaGATAAGCAAAGGTTCCTCGTGGTCTGGGTCATCCCTGAAGAAT +
Preference number: 5 (lower is better)
Translates to: VIISNQETIFGISPC*ISKGSSWSGSSLKN
Trigger: ATTCTTCAGGGATGACCCAGACCACGAGGAACCTTTGCTTATCCAGCAAGGACTGATCCCAAAGATGGTTTCCTGGTTTGAAATAATAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CCA 90 bp TCCCTGAAGAATCTCTGGATACATTTCAGCAGCAGGGAACAATTCTaGAACTCGTTCTTATCCAGCTCCTCTTTTATCAGTCTGTCAAGA +
Preference number: 5 (lower is better)
Translates to: SLKNLWIHFSSREQF*NSFLSSSSFISLSR
Trigger: TCTTGACAGACTGATAAAAGAGGAGCTGGATAAGAACGAGTTCCAGAATTGTTCCCTGCTGCTGAAATGTATCCAGAGATTCTTCAGGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CCA 90 bp AAGTCTGAAATGAGGGGGCCTGTTTGTCTTCTCCCAAAGCTTGAATaGAAGCTTGTAAAATGCCAAGTTGCCTATCGAAGTGGATTTCTA +
Preference number: 5 (lower is better)
Translates to: KSEMRGPVCLLPKLE*KLVKCQVAYRSGFL
Trigger: TAGAAATCCACTTCGATAGGCAACTTGGCATTTTACAAGCTTCCATTCAAGCTTTGGGAGAAGACAAACAGGCCCCCTCATTTCAGACTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CCA 90 bp TTCTTAGGGATTTCCTTTTGTGGTTCTGGGTCCAGGATCGTTCATTaGTACTTAAACTTGAATCTTCATTACTCTCCAAGAGGTCATGGT +
Preference number: 5 (lower is better)
Translates to: FLGISFCGSGSRIVH*YLNLNLHYSPRGHG
Trigger: ACCATGACCTCTTGGAGAGTAATGAAGATTCAAGTTTAAGTACCAATGAACGATCCTGGACCCAGAACCACAAAAGGAAATCCCTAAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000124093.3
ENSMUST00000141292.9
CDS CCA 90 bp TTCTTCCTCTGGGAATATGTTCTTAGGGATTTCCTTTTGTGGTTCTaGGTCCAGGATCGTTCATTGGTACTTAAACTTGAATCTTCATTA +
Preference number: 5 (lower is better)
Translates to: FFLWEYVLRDFLLWF*VQDRSLVLKLESSL
Trigger: TAATGAAGATTCAAGTTTAAGTACCAATGAACGATCCTGGACCCAGAACCACAAAAGGAAATCCCTAAGAACATATTCCCAGAGGAAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000124093.3
ENSMUST00000141292.9
CDS TCA 72 bp TCCAGGTACTCTAAGGAAGATGGACCGCTGGATGGGTaGGGACTTCGGGGTTCTCTCCAGTGCAGGCCGTCT +
Preference number: 6 (lower is better)
Translates to: SRYSKEDGPLDG*GLRGSLQCRPS
Trigger: AGACGGCCTGCACTGGAGAGAACCCCGAAGTCCTCACCCATCCAGCGGTCCATCTTCCTTAGAGTACCTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS GCA 72 bp GTCATTCCTCTGCCTTCCCACAGACATTCGACACAGTaGCTCAGAGAGCGCCACCTGCTGGCTATAGTCGCC +
Preference number: 6 (lower is better)
Translates to: VIPLPSHRHSTQ*LRERHLLAIVA
Trigger: GGCGACTATAGCCAGCAGGTGGCGCTCTCTGAGGCACTGTGTCGAATGTCTGTGGGAAGGCAGAGGAATGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS TCA 72 bp TTCTCCAAGCCGCTCAGCTCCCGAAGGACAGAGCTGTaGAACCTCTCCAGCGTGTCTAGTCTGCACGTGTGT +
Preference number: 6 (lower is better)
Translates to: FSKPLSSRRTEL*NLSSVSSLHVC
Trigger: ACACACGTGCAGACTAGACACGCTGGAGAGGTTTCACAGCTCTGTCCTTCGGGAGCTGAGCGGCTTGGAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CCA 72 bp GGTCAGCTTCAGCATCCACGAGCTCTGGCAGGAGTGTaGATTCTTCCGCATCCTCTGCTTCTCTTTCACAGC +
Preference number: 6 (lower is better)
Translates to: GQLQHPRALAGV*ILPHPLLLFHS
Trigger: GCTGTGAAAGAGAAGCAGAGGATGCGGAAGAATCCACACTCCTGCCAGAGCTCGTGGATGCTGAAGCTGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CAA 72 bp CTCTCCAGTGCAGGCCGTCTGTTACTCTCGTCTTCTTaGTGGAGGAGCTGGGTTCTGAGCCTCTTCGTTCAG +
Preference number: 6 (lower is better)
Translates to: LSSAGRLLLSSS*WRSWVLSLFVQ
Trigger: CTGAACGAAGAGGCTCAGAACCCAGCTCCTCCACAAAGAAGACGAGAGTAACAGACGGCCTGCACTGGAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS TCA 72 bp CTTGCCAGAGCATCCTTCTCGAGGCATTTCAGTGTCTaGAGATTCTTCTCCAAGCCGCTCAGCTCCCGAAGG +
Preference number: 6 (lower is better)
Translates to: LARASFSRHFSV*RFFSKPLSSRR
Trigger: CCTTCGGGAGCTGAGCGGCTTGGAGAAGAATCTTCAGACACTGAAATGCCTCGAGAAGGATGCTCTGGCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CCA 72 bp TCCAGTGCAGGCCGTCTGTTACTCTCGTCTTCTTTGTaGAGGAGCTGGGTTCTGAGCCTCTTCGTTCAGGTT +
Preference number: 6 (lower is better)
Translates to: SSAGRLLLSSSL*RSWVLSLFVQV
Trigger: AACCTGAACGAAGAGGCTCAGAACCCAGCTCCTCCACAAAGAAGACGAGAGTAACAGACGGCCTGCACTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CAA 72 bp CTGTCACGACGGGGGATCCCGGAGCATCTTCTAATCTaGATTGCTTTAGGGCAGCAACACTCCCATCGGGTA +
Preference number: 6 (lower is better)
Translates to: LSRRGIPEHLLI*IALGQQHSHRV
Trigger: TACCCGATGGGAGTGTTGCTGCCCTAAAGCAATCAAGATTAGAAGATGCTCCGGGATCCCCCGTCGTGACAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000124093.3
ENSMUST00000141292.9
CDS GCA 72 bp ACGACGGGGGATCCCGGAGCATCTTCTAATCTTGATTaGTTTAGGGCAGCAACACTCCCATCGGGTATCTCT +
Preference number: 6 (lower is better)
Translates to: TTGDPGASSNLD*FRAATLPSGIS
Trigger: AGAGATACCCGATGGGAGTGTTGCTGCCCTAAAGCAATCAAGATTAGAAGATGCTCCGGGATCCCCCGTCGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000124093.3
ENSMUST00000141292.9
CDS CCA 72 bp GCGCCTTCTGCCGAAGAGAGCTTTCTTCTTTCTTCCTaGGGTGCAGCGTTCAAAATGCAGTTCAAAGTCGCC +
Preference number: 6 (lower is better)
Translates to: APSAEESFLLSS*GAAFKMQFKVA
Trigger: GGCGACTTTGAACTGCATTTTGAACGCTGCACCCCAGGAAGAAAGAAGAAAGCTCTCTTCGGCAGAAGGCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CCA 72 bp AAGCTTCAGCCAGGGCGGTATTCTCAAACCACTGCATaGCAAGGTCATTCCTCTGCCTTCCCACAGACATTC +
Preference number: 6 (lower is better)
Translates to: KLQPGRYSQTTA*QGHSSAFPQTF
Trigger: GAATGTCTGTGGGAAGGCAGAGGAATGACCTTGCCATGCAGTGGTTTGAGAATACCGCCCTGGCTGAAGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CCA 72 bp GGCCGTCTGTTACTCTCGTCTTCTTTGTGGAGGAGCTaGGTTCTGAGCCTCTTCGTTCAGGTTTCTCAAGTC +
Preference number: 6 (lower is better)
Translates to: GRLLLSSSLWRS*VLSLFVQVSQV
Trigger: GACTTGAGAAACCTGAACGAAGAGGCTCAGAACCCAGCTCCTCCACAAAGAAGACGAGAGTAACAGACGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS TCA 72 bp TTCAAAATGCAGTTCAAAGTCGCCAGAGTCTCCTGCTaGATGGAGGGCTTCACGGAATCTTCTGCCACCAGG +
Preference number: 6 (lower is better)
Translates to: FKMQFKVARVSC*MEGFTESSATR
Trigger: CCTGGTGGCAGAAGATTCCGTGAAGCCCTCCATTCAGCAGGAGACTCTGGCGACTTTGAACTGCATTTTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS TCA 72 bp CCCTTCTCTGGTTGCCAAGCCTGTTGTTCAGGAAATTaGGGAACTGCCGACAGTCCGTCTCAAATTCCCGAT +
Preference number: 6 (lower is better)
Translates to: PFSGCQACCSGN*GTADSPSQIPD
Trigger: ATCGGGAATTTGAGACGGACTGTCGGCAGTTCCTCAATTTCCTGAACAACAGGCTTGGCAACCAGAGAAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS TCA 72 bp TCCAGGTACTCTAAGGAAGATGGACCGCTGGATGGGTaGGGACTTCGGGGTTCTATTTTCTGTGTAGATGCC +
Preference number: 6 (lower is better)
Translates to: SRYSKEDGPLDG*GLRGSIFCVDA
Trigger: GGCATCTACACAGAAAATAGAACCCCGAAGTCCTCACCCATCCAGCGGTCCATCTTCCTTAGAGTACCTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141292.9
CDS GCA 72 bp CTGCTGGCTATAGTCGCCCACAGTCAAGATCGTCCTTaGCAATTCTTTCATAAGACAGCATGCGCCTTCTGC +
Preference number: 6 (lower is better)
Translates to: LLAIVAHSQDRP*QFFHKTACAFC
Trigger: GCAGAAGGCGCATGCTGTCTTATGAAAGAATTGGCAAGGACGATCTTGACTGTGGGCGACTATAGCCAGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CCA 72 bp AGAACCATTTACACTTCCTGGCATGTCTTCTTGAGATaGAGTAGAAGTGTCTGTCACGACGGGGGATCCCGG +
Preference number: 6 (lower is better)
Translates to: RTIYTSWHVFLR*SRSVCHDGGSR
Trigger: CCGGGATCCCCCGTCGTGACAGACACTTCTACTCCATCTCAAGAAGACATGCCAGGAAGTGTAAATGGTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CCA 72 bp AACCTCTCCAGCGTGTCTAGTCTGCACGTGTGTATCTaGTTCCAAAGTCTTATTAGGCAAGCTGGCGCTTCC +
Preference number: 6 (lower is better)
Translates to: NLSSVSSLHVCI*FQSLIRQAGAS
Trigger: GGAAGCGCCAGCTTGCCTAATAAGACTTTGGAACCAGATACACACGTGCAGACTAGACACGCTGGAGAGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CAA 72 bp ACCCTTCTCTGGTTGCCAAGCCTGTTGTTCAGGAAATaGAGGAACTGCCGACAGTCCGTCTCAAATTCCCGA +
Preference number: 6 (lower is better)
Translates to: TLLWLPSLLFRK*RNCRQSVSNSR
Trigger: TCGGGAATTTGAGACGGACTGTCGGCAGTTCCTCAATTTCCTGAACAACAGGCTTGGCAACCAGAGAAGGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CAA 90 bp CTCCCATCGGGTATCTCTCTGTGTCCCAAGTTTTCTAGCTTGTGCTaGAAGCTGCTGTTCCCCATGAATGACTCTCGGTTCACAATCTCG +
Preference number: 6 (lower is better)
Translates to: LPSGISLCPKFSSLC*KLLFPMNDSRFTIS
Trigger: CGAGATTGTGAACCGAGAGTCATTCATGGGGAACAGCAGCTTCAAGCACAAGCTAGAAAACTTGGGACACAGAGAGATACCCGATGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000124093.3
ENSMUST00000141292.9
CDS GCA 72 bp GCTTTCTTCTTTCTTCCTGGGGTGCAGCGTTCAAAATaGAGTTCAAAGTCGCCAGAGTCTCCTGCTGAATGG +
Preference number: 6 (lower is better)
Translates to: AFFFLPGVQRSK*SSKSPESPAEW
Trigger: CCATTCAGCAGGAGACTCTGGCGACTTTGAACTGCATTTTGAACGCTGCACCCCAGGAAGAAAGAAGAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS GCA 72 bp CCTTGCCAATTCTTTCATAAGACAGCATGCGCCTTCTaGCGAAGAGAGCTTTCTTCTTTCTTCCTGGGGTGC +
Preference number: 6 (lower is better)
Translates to: PCQFFHKTACAF*RRELSSFFLGC
Trigger: GCACCCCAGGAAGAAAGAAGAAAGCTCTCTTCGGCAGAAGGCGCATGCTGTCTTATGAAAGAATTGGCAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS GCA 72 bp GGGGAGAGTGGTAGGATCCGTAGGGAACTGACTCTCTaGTTCTTCCTCTGGGAATATGTTCTTAGGGATTTC +
Preference number: 6 (lower is better)
Translates to: GESGRIRRELTL*FFLWEYVLRDF
Trigger: GAAATCCCTAAGAACATATTCCCAGAGGAAGAAGCAGAGAGTCAGTTCCCTACGGATCCTACCACTCTCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000124093.3
ENSMUST00000141292.9
CDS GCA 72 bp TCGGGTATCTCTCTGTGTCCCAAGTTTTCTAGCTTGTaGTTGAAGCTGCTGTTCCCCATGAATGACTCTCGG +
Preference number: 6 (lower is better)
Translates to: SGISLCPKFSSL*LKLLFPMNDSR
Trigger: CCGAGAGTCATTCATGGGGAACAGCAGCTTCAAGCACAAGCTAGAAAACTTGGGACACAGAGAGATACCCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000124093.3
ENSMUST00000141292.9
CDS GCA 72 bp GGACAGAGCTGTGAAACCTCTCCAGCGTGTCTAGTCTaGACGTGTGTATCTGGTTCCAAAGTCTTATTAGGC +
Preference number: 6 (lower is better)
Translates to: GQSCETSPACLV*TCVSGSKVLLG
Trigger: GCCTAATAAGACTTTGGAACCAGATACACACGTGCAGACTAGACACGCTGGAGAGGTTTCACAGCTCTGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CCA 72 bp TCAAACCAGGAAACCATCTTTGGGATCAGTCCTTGCTaGATAAGCAAAGGTTCCTCGTGGTCTGGGTCATCC +
Preference number: 6 (lower is better)
Translates to: SNQETIFGISPC*ISKGSSWSGSS
Trigger: GGATGACCCAGACCACGAGGAACCTTTGCTTATCCAGCAAGGACTGATCCCAAAGATGGTTTCCTGGTTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CCA 72 bp ATCTCCAGGCTCCCTTTACTCACACCAGGCACCGTCTaGACATTAAAGCAGCGAGTTATTAAGCATCGGTCA +
Preference number: 6 (lower is better)
Translates to: ISRLPLLTPGTV*TLKQRVIKHRS
Trigger: TGACCGATGCTTAATAACTCGCTGCTTTAATGTCCAGACGGTGCCTGGTGTGAGTAAAGGGAGCCTGGAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS TCA 72 bp CGGAATCTTCTGCCACCAGGAATCCTAAACGAAGTATaGAGGAATCCAACATCTGGACTGTCGCTTTCCTGC +
Preference number: 6 (lower is better)
Translates to: RNLLPPGILNEV*RNPTSGLSLSC
Trigger: GCAGGAAAGCGACAGTCCAGATGTTGGATTCCTTCATACTTCGTTTAGGATTCCTGGTGGCAGAAGATTCCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CCA 72 bp CAGTCCTTGCTGGATAAGCAAAGGTTCCTCGTGGTCTaGGTCATCCCTGAAGAATCTCTGGATACATTTCAG +
Preference number: 6 (lower is better)
Translates to: QSLLDKQRFLVV*VIPEESLDTFQ
Trigger: CTGAAATGTATCCAGAGATTCTTCAGGGATGACCCAGACCACGAGGAACCTTTGCTTATCCAGCAAGGACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CAA 72 bp AGGGCATTAGTCAGCAGCGCCTCCGAGGCCAGCACTTaGGTGATCAGTAATCCTGTTATTATTTCAAACCAG +
Preference number: 6 (lower is better)
Translates to: RALVSSASEAST*VISNPVIISNQ
Trigger: CTGGTTTGAAATAATAACAGGATTACTGATCACCAAAGTGCTGGCCTCGGAGGCGCTGCTGACTAATGCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CAA 72 bp GGTATCTCTCTGTGTCCCAAGTTTTCTAGCTTGTGCTaGAAGCTGCTGTTCCCCATGAATGACTCTCGGTTC +
Preference number: 6 (lower is better)
Translates to: GISLCPKFSSLC*KLLFPMNDSRF
Trigger: GAACCGAGAGTCATTCATGGGGAACAGCAGCTTCAAGCACAAGCTAGAAAACTTGGGACACAGAGAGATACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000124093.3
ENSMUST00000141292.9
CDS CAA 72 bp CCATCGGGTATCTCTCTGTGTCCCAAGTTTTCTAGCTaGTGCTTGAAGCTGCTGTTCCCCATGAATGACTCT +
Preference number: 6 (lower is better)
Translates to: PSGISLCPKFSS*CLKLLFPMNDS
Trigger: AGAGTCATTCATGGGGAACAGCAGCTTCAAGCACAAGCTAGAAAACTTGGGACACAGAGAGATACCCGATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000124093.3
ENSMUST00000141292.9
CDS CAA 90 bp AAGTCTTCCAGGGCATTAGTCAGCAGCGCCTCCGAGGCCAGCACTTaGGTGATCAGTAATCCTGTTATTATTTCAAACCAGGAAACCATC +
Preference number: 6 (lower is better)
Translates to: KSSRALVSSASEAST*VISNPVIISNQETI
Trigger: GATGGTTTCCTGGTTTGAAATAATAACAGGATTACTGATCACCAAAGTGCTGGCCTCGGAGGCGCTGCTGACTAATGCCCTGGAAGACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS TCA 72 bp AAAGCAGAACCATTTACACTTCCTGGCATGTCTTCTTaGGATGGAGTAGAAGTGTCTGTCACGACGGGGGAT +
Preference number: 6 (lower is better)
Translates to: KAEPFTLPGMSS*DGVEVSVTTGD
Trigger: ATCCCCCGTCGTGACAGACACTTCTACTCCATCTCAAGAAGACATGCCAGGAAGTGTAAATGGTTCTGCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS TCA 72 bp TGTTACTCTCGTCTTCTTTGTGGAGGAGCTGGGTTCTaGGCCTCTTCGTTCAGGTTTCTCAAGTCCTATTTT +
Preference number: 6 (lower is better)
Translates to: CYSRLLCGGAGF*ASSFRFLKSYF
Trigger: AAAATAGGACTTGAGAAACCTGAACGAAGAGGCTCAGAACCCAGCTCCTCCACAAAGAAGACGAGAGTAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS GCA 72 bp CAAGATCGTCCTTGCCAATTCTTTCATAAGACAGCATaGGCCTTCTGCCGAAGAGAGCTTTCTTCTTTCTTC +
Preference number: 6 (lower is better)
Translates to: QDRPCQFFHKTA*AFCRRELSSFF
Trigger: GAAGAAAGAAGAAAGCTCTCTTCGGCAGAAGGCGCATGCTGTCTTATGAAAGAATTGGCAAGGACGATCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS GCA 72 bp TGGTTGCCAAGCCTGTTGTTCAGGAAATTGAGGAACTaGCGACAGTCCGTCTCAAATTCCCGATTCTTAATT +
Preference number: 6 (lower is better)
Translates to: WLPSLLFRKLRN*RQSVSNSRFLI
Trigger: AATTAAGAATCGGGAATTTGAGACGGACTGTCGGCAGTTCCTCAATTTCCTGAACAACAGGCTTGGCAACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CAA 90 bp CTGGTTCATCTTGTTTTGAGTTTTCAAGTGAACGTTCTTCTGTATTaGTTATCTCCAGGCTCCCTTTACTCACACCAGGCACCGTCTGGA +
Preference number: 6 (lower is better)
Translates to: LVHLVLSFQVNVLLY*LSPGSLYSHQAPSG
Trigger: TCCAGACGGTGCCTGGTGTGAGTAAAGGGAGCCTGGAGATAACAAATACAGAAGAACGTTCACTTGAAAACTCAAAACAAGATGAACCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CAA 72 bp GGTTCTGGGTCCAGGATCGTTCATTGGTACTTAAACTaGAATCTTCATTACTCTCCAAGAGGTCATGGTTCC +
Preference number: 6 (lower is better)
Translates to: GSGSRIVHWYLN*NLHYSPRGHGS
Trigger: GGAACCATGACCTCTTGGAGAGTAATGAAGATTCAAGTTTAAGTACCAATGAACGATCCTGGACCCAGAACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000124093.3
ENSMUST00000141292.9
CDS CCA 72 bp AGGAATCCTAAACGAAGTATGAAGGAATCCAACATCTaGACTGTCGCTTTCCTGCTATGTCTGGAAATGATC +
Preference number: 6 (lower is better)
Translates to: RNPKRSMKESNI*TVAFLLCLEMI
Trigger: GATCATTTCCAGACATAGCAGGAAAGCGACAGTCCAGATGTTGGATTCCTTCATACTTCGTTTAGGATTCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CCA 72 bp GATGAACTTGACCATGGCTTCCTTCAAAAGTTTTACTaGCTCCCACAGAGCACTCTCTGCATTATCTATGTA +
Preference number: 6 (lower is better)
Translates to: DELDHGFLQKFY*LPQSTLCIIYV
Trigger: TACATAGATAATGCAGAGAGTGCTCTGTGGGAGCCAGTAAAACTTTTGAAGGAAGCCATGGTCAAGTTCATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CCA 72 bp GAAGGCCGTTTTAAAAGCAGAACCATTTACACTTCCTaGCATGTCTTCTTGAGATGGAGTAGAAGTGTCTGT +
Preference number: 6 (lower is better)
Translates to: EGRFKSRTIYTS*HVFLRWSRSVC
Trigger: ACAGACACTTCTACTCCATCTCAAGAAGACATGCCAGGAAGTGTAAATGGTTCTGCTTTTAAAACGGCCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CAA 72 bp TTCTTCCTCTGGGAATATGTTCTTAGGGATTTCCTTTaGTGGTTCTGGGTCCAGGATCGTTCATTGGTACTT +
Preference number: 6 (lower is better)
Translates to: FFLWEYVLRDFL*WFWVQDRSLVL
Trigger: AAGTACCAATGAACGATCCTGGACCCAGAACCACAAAAGGAAATCCCTAAGAACATATTCCCAGAGGAAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000124093.3
ENSMUST00000141292.9
CDS CAA 90 bp GTTCTTAGGGATTTCCTTTTGTGGTTCTGGGTCCAGGATCGTTCATaGGTACTTAAACTTGAATCTTCATTACTCTCCAAGAGGTCATGG +
Preference number: 6 (lower is better)
Translates to: VLRDFLLWFWVQDRS*VLKLESSLLSKRSW
Trigger: CCATGACCTCTTGGAGAGTAATGAAGATTCAAGTTTAAGTACCAATGAACGATCCTGGACCCAGAACCACAAAAGGAAATCCCTAAGAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000124093.3
ENSMUST00000141292.9
CDS CAA 90 bp ACTCTCTGCTTCTTCCTCTGGGAATATGTTCTTAGGGATTTCCTTTaGTGGTTCTGGGTCCAGGATCGTTCATTGGTACTTAAACTTGAA +
Preference number: 6 (lower is better)
Translates to: TLCFFLWEYVLRDFL*WFWVQDRSLVLKLE
Trigger: TTCAAGTTTAAGTACCAATGAACGATCCTGGACCCAGAACCACAAAAGGAAATCCCTAAGAACATATTCCCAGAGGAAGAAGCAGAGAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000124093.3
ENSMUST00000141292.9
CDS CCA 72 bp AATCTCTGGATACATTTCAGCAGCAGGGAACAATTCTaGAACTCGTTCTTATCCAGCTCCTCTTTTATCAGT +
Preference number: 6 (lower is better)
Translates to: NLWIHFSSREQF*NSFLSSSSFIS
Trigger: ACTGATAAAAGAGGAGCTGGATAAGAACGAGTTCCAGAATTGTTCCCTGCTGCTGAAATGTATCCAGAGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CAA 72 bp CTTGTTTTGAGTTTTCAAGTGAACGTTCTTCTGTATTaGTTATCTCCAGGCTCCCTTTACTCACACCAGGCA +
Preference number: 6 (lower is better)
Translates to: LVLSFQVNVLLY*LSPGSLYSHQA
Trigger: TGCCTGGTGTGAGTAAAGGGAGCCTGGAGATAACAAATACAGAAGAACGTTCACTTGAAAACTCAAAACAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124093.3
CDS CCA 72 bp TGGGAATATGTTCTTAGGGATTTCCTTTTGTGGTTCTaGGTCCAGGATCGTTCATTGGTACTTAAACTTGAA +
Preference number: 6 (lower is better)
Translates to: WEYVLRDFLLWF*VQDRSLVLKLE
Trigger: TTCAAGTTTAAGTACCAATGAACGATCCTGGACCCAGAACCACAAAAGGAAATCCCTAAGAACATATTCCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000124093.3
ENSMUST00000141292.9
CDS CCA 72 bp ATTTCCTTTTGTGGTTCTGGGTCCAGGATCGTTCATTaGTACTTAAACTTGAATCTTCATTACTCTCCAAGA +
Preference number: 6 (lower is better)
Translates to: ISFCGSGSRIVH*YLNLNLHYSPR
Trigger: TCTTGGAGAGTAATGAAGATTCAAGTTTAAGTACCAATGAACGATCCTGGACCCAGAACCACAAAAGGAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000124093.3
ENSMUST00000141292.9