Pregenerated sensors for SYCP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027855Ensembl transcript IDs: ENSMUST00000029448.11, ENSMUST00000196988.5, ENSMUST00000199930.2
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TTCCTCCAAGGTACATGTAGTAGCTTTAAGTTCAGTCACCACAAATaGGTGAGTAGTTTTAGCTTTGTTGAGTTCTTCCATTTGAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: FLQGTCSSFKFSHHK*VSSFSFVEFFHLSF Trigger: GAAGCTCAAATGGAAGAACTCAACAAAGCTAAAACTACTCACTCATTTGTGGTGACTGAACTTAAAGCTACTACATGTACCTTGGAGGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029448.11 ENSMUST00000196988.5 |
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| CDS CCA 90 bp | GTAAAATGCTTTTGGCAGATGCCCGCAGATTATCTCTGTTATCTTTaGATTTGCCACTATCCATTGATGAGGAAAGCCGAGATATATTTT | + |
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Preference number: 5 (lower is better) Translates to: VKCFWQMPADYLCYL*ICHYPLMRKAEIYF Trigger: AAAATATATCTCGGCTTTCCTCATCAATGGATAGTGGCAAATCCAAAGATAACAGAGATAATCTGCGGGCATCTGCCAAAAGCATTTTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029448.11 ENSMUST00000196988.5 |
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| CDS CCA 90 bp | TGCTGTTCACTTGTTTTAGTGACAGTTACTTGTTCTTGCAAATCATaGACTTCTTTCTCTCTGGTTTCCAAAAGGAAAGTTAGTTCTTGT | + |
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Preference number: 5 (lower is better) Translates to: CCSLVLVTVTCSCKS*TSFSLVSKRKVSSC Trigger: ACAAGAACTAACTTTCCTTTTGGAAACCAGAGAGAAAGAAGTCCATGATTTGCAAGAACAAGTAACTGTCACTAAAACAAGTGAACAGCA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029448.11 ENSMUST00000196988.5 |
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| CDS GCA 90 bp | GCATTTTCTTCACTCTTGTCCAATTTACACTTAACTTCATCTCCTTaGTGTATGAACTCTTTTCTTACTGATTCCAGTTCATCCCTTAAA | + |
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Preference number: 5 (lower is better) Translates to: AFSSLLSNLHLTSSP*CMNSFLTDSSSSLK Trigger: TTTAAGGGATGAACTGGAATCAGTAAGAAAAGAGTTCATACAGCAAGGAGATGAAGTTAAGTGTAAATTGGACAAGAGTGAAGAAAATGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029448.11 ENSMUST00000196988.5 |
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| CDS CCA 72 bp | TTTTGGCAGATGCCCGCAGATTATCTCTGTTATCTTTaGATTTGCCACTATCCATTGATGAGGAAAGCCGAG | + |
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Preference number: 6 (lower is better) Translates to: FWQMPADYLCYL*ICHYPLMRKAE Trigger: CTCGGCTTTCCTCATCAATGGATAGTGGCAAATCCAAAGATAACAGAGATAATCTGCGGGCATCTGCCAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029448.11 ENSMUST00000196988.5 |
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| CDS CAA 72 bp | CTTTTGGCAGATGCCCGCAGATTATCTCTGTTATCTTaGGATTTGCCACTATCCATTGATGAGGAAAGCCGA | + |
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Preference number: 6 (lower is better) Translates to: LLADARRLSLLS*DLPLSIDEESR Trigger: TCGGCTTTCCTCATCAATGGATAGTGGCAAATCCAAAGATAACAGAGATAATCTGCGGGCATCTGCCAAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029448.11 ENSMUST00000196988.5 |
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| CDS CAA 72 bp | GCAGATGCCCGCAGATTATCTCTGTTATCTTTGGATTaGCCACTATCCATTGATGAGGAAAGCCGAGATATA | + |
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Preference number: 6 (lower is better) Translates to: ADARRLSLLSLD*PLSIDEESRDI Trigger: TATATCTCGGCTTTCCTCATCAATGGATAGTGGCAAATCCAAAGATAACAGAGATAATCTGCGGGCATCTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029448.11 ENSMUST00000196988.5 |
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| CDS CCA 72 bp | CTTTCTGTAACTTTACAGCTTCATCAACTGTTGCTTTaGCTTTCTCAACCTCTCCCAAAAGCTTTCCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: LSVTLQLHQLLL*LSQPLPKAFLL Trigger: CAGAAGGAAAGCTTTTGGGAGAGGTTGAGAAAGCCAAAGCAACAGTTGATGAAGCTGTAAAGTTACAGAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029448.11 ENSMUST00000196988.5 |
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| CDS CAA 90 bp | ATGCTTTTGGCAGATGCCCGCAGATTATCTCTGTTATCTTTGGATTaGCCACTATCCATTGATGAGGAAAGCCGAGATATATTTTGTGAA | + |
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Preference number: 6 (lower is better) Translates to: MLLADARRLSLLSLD*PLSIDEESRDIFCE Trigger: TTCACAAAATATATCTCGGCTTTCCTCATCAATGGATAGTGGCAAATCCAAAGATAACAGAGATAATCTGCGGGCATCTGCCAAAAGCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029448.11 ENSMUST00000196988.5 |
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| CDS CAA 90 bp | GGTAAAATGCTTTTGGCAGATGCCCGCAGATTATCTCTGTTATCTTaGGATTTGCCACTATCCATTGATGAGGAAAGCCGAGATATATTT | + |
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Preference number: 6 (lower is better) Translates to: GKMLLADARRLSLLS*DLPLSIDEESRDIF Trigger: AAATATATCTCGGCTTTCCTCATCAATGGATAGTGGCAAATCCAAAGATAACAGAGATAATCTGCGGGCATCTGCCAAAAGCATTTTACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029448.11 ENSMUST00000196988.5 |
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| CDS TCA 72 bp | GGTACATGTAGTAGCTTTAAGTTCAGTCACCACAAATaGGTGAGTAGTTTTAGCTTTGTTGAGTTCTTCCAT | + |
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Preference number: 6 (lower is better) Translates to: GTCSSFKFSHHK*VSSFSFVEFFH Trigger: ATGGAAGAACTCAACAAAGCTAAAACTACTCACTCATTTGTGGTGACTGAACTTAAAGCTACTACATGTACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029448.11 ENSMUST00000196988.5 |
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| CDS CAA 72 bp | TCTAGGGCCATATCACTTGCTTCTTGTACAAATTTTTaGTTCTCAAGCAAAAGCATGTCACAACTTGCAGTT | + |
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Preference number: 6 (lower is better) Translates to: SRAISLASCTNF*FSSKSMSQLAV Trigger: AACTGCAAGTTGTGACATGCTTTTGCTTGAGAACAAAAAATTTGTACAAGAAGCAAGTGATATGGCCCTAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029448.11 ENSMUST00000196988.5 |
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| CDS CAA 72 bp | ACTTCACATTCAATGCTTCGAGCATTTTCTTCACTCTaGTCCAATTTACACTTAACTTCATCTCCTTGCTGT | + |
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Preference number: 6 (lower is better) Translates to: TSHSMLRAFSSL*SNLHLTSSPCC Trigger: ACAGCAAGGAGATGAAGTTAAGTGTAAATTGGACAAGAGTGAAGAAAATGCTCGAAGCATTGAATGTGAAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029448.11 ENSMUST00000196988.5 |
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| CDS CAA 72 bp | GATGAGAATCTGGTGGATTATTATCATAAAGTCTGTTaGATACATCTTCCTCTGAAACCAGGCTCAAGAGAT | + |
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Preference number: 6 (lower is better) Translates to: DENLVDYYHKVC*IHLPLKPGSRD Trigger: ATCTCTTGAGCCTGGTTTCAGAGGAAGATGTATCAAACAGACTTTATGATAATAATCCACCAGATTCTCATC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029448.11 ENSMUST00000196988.5 |
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| CDS CAA 90 bp | TTCTTGAGTTCTAGGGCCATATCACTTGCTTCTTGTACAAATTTTTaGTTCTCAAGCAAAAGCATGTCACAACTTGCAGTTAATTCAGTA | + |
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Preference number: 6 (lower is better) Translates to: FLSSRAISLASCTNF*FSSKSMSQLAVNSV Trigger: TACTGAATTAACTGCAAGTTGTGACATGCTTTTGCTTGAGAACAAAAAATTTGTACAAGAAGCAAGTGATATGGCCCTAGAACTCAAGAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029448.11 ENSMUST00000196988.5 |
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| CDS TCA 72 bp | TTTGGCTTTCTCAACCTCTCCCAAAAGCTTTCCTTCTaGTATCTTTTTGTTCTCAATTTCCTTCTGGTAATT | + |
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Preference number: 6 (lower is better) Translates to: FGFLNLSQKLSF*YLFVLNFLLVI Trigger: AATTACCAGAAGGAAATTGAGAACAAAAAGATATCAGAAGGAAAGCTTTTGGGAGAGGTTGAGAAAGCCAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029448.11 ENSMUST00000196988.5 |
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| CDS CCA 72 bp | CTTGTTTTAGTGACAGTTACTTGTTCTTGCAAATCATaGACTTCTTTCTCTCTGGTTTCCAAAAGGAAAGTT | + |
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Preference number: 6 (lower is better) Translates to: LVLVTVTCSCKS*TSFSLVSKRKV Trigger: AACTTTCCTTTTGGAAACCAGAGAGAAAGAAGTCCATGATTTGCAAGAACAAGTAACTGTCACTAAAACAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029448.11 ENSMUST00000196988.5 |
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| CDS CAA 72 bp | TTATTTGTCTTTTCTGCAGATCTAGCACAGGTTTCCTaGAGTAGATTACACCAATGTATTGTAGCATTATTC | + |
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Preference number: 6 (lower is better) Translates to: LFVFSADLAQVS*SRLHQCIVALF Trigger: GAATAATGCTACAATACATTGGTGTAATCTACTCAAGGAAACCTGTGCTAGATCTGCAGAAAAGACAAATAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029448.11 ENSMUST00000196988.5 ENSMUST00000199930.2 |
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