RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SYCN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000084174

Ensembl transcript IDs: ENSMUST00000119180.4

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp GGAAGCTATGAGAGCAGGTCGTGGGGTCATCTTGCCTCCTGGCTCTaGGAGCTACAGCAATTCCCAAGGCCAGGCTGGGTAGACAGAGCC +
Preference number: 2 (lower is better)
Translates to: GSYESRSWGHLASWL*ELQQFPRPGWVDRA
Trigger: GGCTCTGTCTACCCAGCCTGGCCTTGGGAATTGCTGTAGCTCCAAGAGCCAGGAGGCAAGATGACCCCACGACCTGCTCTCATAGCTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119180.4
3UTR-3UTR CCA 90 bp TGTAACTTTGAAAGGGCTGTATTACAGGGAAGCTATGAGAGCAGGTCGTGGGGTTTCCCAAGGCCAGGCTaGGTAGACAGAGCCTCAAGG +
Preference number: 2 (lower is better)
Translates to: CNFERAVLQGSYESRSWGFPRPG*VDRASR
Trigger: CCTTGAGGCTCTGTCTACCCAGCCTGGCCTTGGGAA...ACCCCACGACCTGCTCTCATAGCTTCCCTGTAATACAGCCCTTTCAAAGTTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119180.4
3UTR-3UTR CCA 90 bp TGTAACTTTGAAAGGGCTGTATTACAGGGAAGCTATGAGAGCAGGTCGTGGGGTTTGCCTCCTGGCTCTTaGAGCTACAGCAATTCCCAA +
Preference number: 2 (lower is better)
Translates to: CNFERAVLQGSYESRSWGLPPGS*SYSNSQ
Trigger: TTGGGAATTGCTGTAGCTCCAAGAGCCAGGAGGCAA...ACCCCACGACCTGCTCTCATAGCTTCCCTGTAATACAGCCCTTTCAAAGTTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119180.4
3UTR-3UTR CAA 90 bp TGTAACTTTGAAAGGGCTGTATTACAGGGAAGCTATGAGAGCAGGTCGTGGGGTCTTGCCTCCTGGCTCTaGGAGCTACAGCAATTCCCA +
Preference number: 3 (lower is better)
Translates to: CNFERAVLQGSYESRSWGLASWL*ELQQFP
Trigger: TGGGAATTGCTGTAGCTCCAAGAGCCAGGAGGCAAG...ACCCCACGACCTGCTCTCATAGCTTCCCTGTAATACAGCCCTTTCAAAGTTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119180.4
3UTR CAA 72 bp GAGAGCAGGTCGTGGGGTCATCTTGCCTCCTGGCTCTaGGAGCTACAGCAATTCCCAAGGCCAGGCTGGGTA +
Preference number: 4 (lower is better)
Translates to: ESRSWGHLASWL*ELQQFPRPGWV
Trigger: TACCCAGCCTGGCCTTGGGAATTGCTGTAGCTCCAAGAGCCAGGAGGCAAGATGACCCCACGACCTGCTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119180.4
CDS-3UTR CCA 90 bp TGTAACTTTGAAAGGGCTGTATTACAGGGAAGCTATGAGAGCAGGTCGTGGGGTACCGGGCAATTGCCATaGGCACCAGGGACAGCCACC +
Preference number: 4 (lower is better)
Translates to: CNFERAVLQGSYESRSWGTGQLP*APGTAT
Trigger: GGTGGCTGTCCCTGGTGCCCATGGCAATTGCCCGGT...ACCCCACGACCTGCTCTCATAGCTTCCCTGTAATACAGCCCTTTCAAAGTTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119180.4
CDS-3UTR TCA 90 bp TGTAACTTTGAAAGGGCTGTATTACAGGGAAGCTATGAGAGCAGGTCGTGGGGTGGAGAGACCACACAGTaGTCTCACAGCGCTGGCCCA +
Preference number: 4 (lower is better)
Translates to: CNFERAVLQGSYESRSWGGETTQ*SHSAGP
Trigger: TGGGCCAGCGCTGTGAGATCACTGTGTGGTCTCTCC...ACCCCACGACCTGCTCTCATAGCTTCCCTGTAATACAGCCCTTTCAAAGTTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119180.4
CDS-3UTR CCA 90 bp TGTAACTTTGAAAGGGCTGTATTACAGGGAAGCTATGAGAGCAGGTCGTGGGGTAGTAGAGGGCAGAGATaGAGTCGGACCAGTCTCCAA +
Preference number: 4 (lower is better)
Translates to: CNFERAVLQGSYESRSWGSRGQR*SRTSLQ
Trigger: TTGGAGACTGGTCCGACTCCATCTCTGCCCTCTACT...ACCCCACGACCTGCTCTCATAGCTTCCCTGTAATACAGCCCTTTCAAAGTTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119180.4
CDS-3UTR CCA 90 bp TGTAACTTTGAAAGGGCTGTATTACAGGGAAGCTATGAGAGCAGGTCGTGGGGTGCAGTTGTCATAGTATaGATCACTCTTCTCATAGAG +
Preference number: 4 (lower is better)
Translates to: CNFERAVLQGSYESRSWGAVVIV*ITLLIE
Trigger: CTCTATGAGAAGAGTGATCCATACTATGACAACTGC...ACCCCACGACCTGCTCTCATAGCTTCCCTGTAATACAGCCCTTTCAAAGTTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119180.4
CDS GCA 90 bp AGACCACACAGTGATCTCACAGCGCTGGCCCACTACCAGAGACGATaGAGTGTTAGACCAGCCCGAGGGCAGATAGGGCAGGTCAGTACC +
Preference number: 5 (lower is better)
Translates to: RPHSDLTALAHYQRR*SVRPARGQIGQVST
Trigger: GGTACTGACCTGCCCTATCTGCCCTCGGGCTGGTCTAACACTGCATCGTCTCTGGTAGTGGGCCAGCGCTGTGAGATCACTGTGTGGTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119180.4
CDS CCA 90 bp TGCAGTGTTAGACCAGCCCGAGGGCAGATAGGGCAGGTCAGTACCTaGCTCCACAGACAACACGGGCCCCTGGCAGCAGTTGTCATAGTA +
Preference number: 5 (lower is better)
Translates to: CSVRPARGQIGQVST*LHRQHGPLAAVVIV
Trigger: TACTATGACAACTGCTGCCAGGGGCCCGTGTTGTCTGTGGAGCCAGGTACTGACCTGCCCTATCTGCCCTCGGGCTGGTCTAACACTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119180.4
CDS CCA 72 bp GACTTCTTCAGGTCTGCGGGCACCGGGCAATTGCCATaGGCACCAGGGACAGCCACCAGGGCTAAAGCCAGC +
Preference number: 6 (lower is better)
Translates to: DFFRSAGTGQLP*APGTATRAKAS
Trigger: GCTGGCTTTAGCCCTGGTGGCTGTCCCTGGTGCCCATGGCAATTGCCCGGTGCCCGCAGACCTGAAGAAGTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119180.4
CDS CCA 72 bp AGACCAGCCCGAGGGCAGATAGGGCAGGTCAGTACCTaGCTCCACAGACAACACGGGCCCCTGGCAGCAGTT +
Preference number: 6 (lower is better)
Translates to: RPARGQIGQVST*LHRQHGPLAAV
Trigger: AACTGCTGCCAGGGGCCCGTGTTGTCTGTGGAGCCAGGTACTGACCTGCCCTATCTGCCCTCGGGCTGGTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119180.4
CDS CAA 90 bp GTACGCGTCCCATCTGACTTCTTCAGGTCTGCGGGCACCGGGCAATaGCCATGGGCACCAGGGACAGCCACCAGGGCTAAAGCCAGCAGC +
Preference number: 6 (lower is better)
Translates to: VRVPSDFFRSAGTGQ*PWAPGTATRAKASS
Trigger: GCTGCTGGCTTTAGCCCTGGTGGCTGTCCCTGGTGCCCATGGCAATTGCCCGGTGCCCGCAGACCTGAAGAAGTCAGATGGGACGCGTAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119180.4
CDS TCA 72 bp TGCGGTACTCTTCCAGGCGAGGGTAAGAACCCGCGGTaGACTTGCGGGTCTTGCCATGCTTACCGGGGAGAG +
Preference number: 6 (lower is better)
Translates to: CGTLPGEGKNPR*TCGSCHAYRGE
Trigger: CTCTCCCCGGTAAGCATGGCAAGACCCGCAAGTTCACCGCGGGTTCTTACCCTCGCCTGGAAGAGTACCGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119180.4
CDS GCA 72 bp CATCTGACTTCTTCAGGTCTGCGGGCACCGGGCAATTaGCATGGGCACCAGGGACAGCCACCAGGGCTAAAG +
Preference number: 6 (lower is better)
Translates to: HLTSSGLRAPGN*HGHQGQPPGLK
Trigger: CTTTAGCCCTGGTGGCTGTCCCTGGTGCCCATGGCAATTGCCCGGTGCCCGCAGACCTGAAGAAGTCAGATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119180.4
CDS CAA 72 bp CCATCTGACTTCTTCAGGTCTGCGGGCACCGGGCAATaGCCATGGGCACCAGGGACAGCCACCAGGGCTAAA +
Preference number: 6 (lower is better)
Translates to: PSDFFRSAGTGQ*PWAPGTATRAK
Trigger: TTTAGCCCTGGTGGCTGTCCCTGGTGCCCATGGCAATTGCCCGGTGCCCGCAGACCTGAAGAAGTCAGATGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119180.4
CDS GCA 72 bp CAGAGATGGAGTCGGACCAGTCTCCAAAGATGCCTTTaGGGTACTCTTCCAGGCGAGGGTAAGAACCCGCGG +
Preference number: 6 (lower is better)
Translates to: QRWSRTSLQRCL*GTLPGEGKNPR
Trigger: CCGCGGGTTCTTACCCTCGCCTGGAAGAGTACCGCAAAGGCATCTTTGGAGACTGGTCCGACTCCATCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119180.4
CDS GCA 72 bp AGAGGGCAGAGATGGAGTCGGACCAGTCTCCAAAGATaGCTTTGCGGTACTCTTCCAGGCGAGGGTAAGAAC +
Preference number: 6 (lower is better)
Translates to: RGQRWSRTSLQR*LCGTLPGEGKN
Trigger: GTTCTTACCCTCGCCTGGAAGAGTACCGCAAAGGCATCTTTGGAGACTGGTCCGACTCCATCTCTGCCCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119180.4