Pregenerated sensors for SYCE3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078938

Ensembl transcript IDs: ENSMUST00000109314.9, ENSMUST00000167959.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	AATAAGTTTATTGAGAAACAAGTACCATGCACATGGCTACACGTCTaGGCTTCTGGACCCATGTCCCTGGCTTCGGCCCACAGGCTGCTG	+
Preference number: 1 (lower is better) Translates to: NKFIEKQVPCTWLHV*ASGPMSLASAHRLL Trigger: CAGCAGCCTGTGGGCCGAAGCCAGGGACATGGGTCCAGAAGCCCAGACGTGTAGCCATGTGCATGGTACTTGTTTCTCAATAAACTTATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109314.9 ENSMUST00000167959.2
3UTR CCA 72 bp	ATTGAGAAACAAGTACCATGCACATGGCTACACGTCTaGGCTTCTGGACCCATGTCCCTGGCTTCGGCCCAC	+
Preference number: 3 (lower is better) Translates to: IEKQVPCTWLHV*ASGPMSLASAH Trigger: GTGGGCCGAAGCCAGGGACATGGGTCCAGAAGCCCAGACGTGTAGCCATGTGCATGGTACTTGTTTCTCAAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109314.9 ENSMUST00000167959.2
CDS-3UTR GCA 90 bp	CGTCTGGGCTTCTGGACCCATGTCCCTGGCTTCGGCCCACAGGCTGCTGACAGATCAGTGAGCAGCTCTTaGCAGTTCTTCTCCATCTCC	+
Preference number: 4 (lower is better) Translates to: RLGFWTHVPGFGPQAADRSVSSS*QFFSIS Trigger: GGAGATGGAGAAGAACTGGCAAGAGCTGCTCACTGA...TCTGTCAGCAGCCTGTGGGCCGAAGCCAGGGACATGGGTCCAGAAGCCCAGACG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109314.9 ENSMUST00000167959.2
CDS-3UTR TCA 90 bp	AAGTACCATGCACATGGCTACACGTCTGGGCTTCTGGACCCATGTCCCTGGCTTTGCGCTTGGTCTCAGTaGGCAGCTCTTGCCAGTTCT	+
Preference number: 4 (lower is better) Translates to: KYHAHGYTSGLLDPCPWLCAWSQ*AALASS Trigger: AGAACTGGCAAGAGCTGCTCACTGAGACCAAGCGCA...AAGCCAGGGACATGGGTCCAGAAGCCCAGACGTGTAGCCATGTGCATGGTACTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109314.9 ENSMUST00000167959.2
CDS-3UTR TCA 90 bp	AACAAGTACCATGCACATGGCTACACGTCTGGGCTTCTGGACCCATGTCCCTGGTGCGCTTGGTCTCAGTaGGCAGCTCTTGCCAGTTCT	+
Preference number: 4 (lower is better) Translates to: NKYHAHGYTSGLLDPCPWCAWSQ*AALASS Trigger: AGAACTGGCAAGAGCTGCTCACTGAGACCAAGCGCA...CCAGGGACATGGGTCCAGAAGCCCAGACGTGTAGCCATGTGCATGGTACTTGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109314.9 ENSMUST00000167959.2
CDS-3UTR GCA 90 bp	AAACAAGTACCATGCACATGGCTACACGTCTGGGCTTCTGGACCCATGTCCCTGTCAGTGAGCAGCTCTTaGCAGTTCTTCTCCATCTCC	+
Preference number: 4 (lower is better) Translates to: KQVPCTWLHVWASGPMSLSVSSS*QFFSIS Trigger: GGAGATGGAGAAGAACTGGCAAGAGCTGCTCACTGA...CAGGGACATGGGTCCAGAAGCCCAGACGTGTAGCCATGTGCATGGTACTTGTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109314.9 ENSMUST00000167959.2
CDS-3UTR CAA 90 bp	CGTCTGGGCTTCTGGACCCATGTCCCTGGCTTCGGCCCACAGGCTGCTGACAGATTCTCCATCTCCTCTTaGCAGTTGAGGAAGGCGTCT	+
Preference number: 5 (lower is better) Translates to: RLGFWTHVPGFGPQAADRFSISS*QLRKAS Trigger: AGACGCCTTCCTCAACTGCAAAGAGGAGATGGAGAA...TCTGTCAGCAGCCTGTGGGCCGAAGCCAGGGACATGGGTCCAGAAGCCCAGACG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109314.9 ENSMUST00000167959.2
CDS-3UTR CAA 90 bp	CGTCTGGGCTTCTGGACCCATGTCCCTGGCTTCGGCCCACAGGCTGCTGACAGAAGCTTTTCCAGGTCCTaGTTCAGGTCAGACAGCATT	+
Preference number: 5 (lower is better) Translates to: RLGFWTHVPGFGPQAADRSFSRS*FRSDSI Trigger: AATGCTGTCTGACCTGAACAAGGACCTGGAAAAGCT...TCTGTCAGCAGCCTGTGGGCCGAAGCCAGGGACATGGGTCCAGAAGCCCAGACG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109314.9 ENSMUST00000167959.2
CDS-3UTR CAA 90 bp	GCACATGGCTACACGTCTGGGCTTCTGGACCCATGTCCCTGGCTTCGGCCCACAATCTCCTCTTTGCAGTaGAGGAAGGCGTCTTCTAGC	+
Preference number: 5 (lower is better) Translates to: AHGYTSGLLDPCPWLRPTISSLQ*RKASSS Trigger: GCTAGAAGACGCCTTCCTCAACTGCAAAGAGGAGAT...TGTGGGCCGAAGCCAGGGACATGGGTCCAGAAGCCCAGACGTGTAGCCATGTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109314.9 ENSMUST00000167959.2
CDS TCA 90 bp	CTTCTAGCCGGCGCATGGACTCTGCTAGTGTGGGGTTCGTACGCATaGCCACCATATCATAGGCCATCCAGGTTGCCTGCACTGAGATTT	+
Preference number: 5 (lower is better) Translates to: LLAGAWTLLVWGSYA*PPYHRPSRLPALRF Trigger: AAATCTCAGTGCAGGCAACCTGGATGGCCTATGATATGGTGGTCATGCGTACGAACCCCACACTAGCAGAGTCCATGCGCCGGCTAGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109314.9 ENSMUST00000167959.2
CDS-3UTR CAA 90 bp	AAACAAGTACCATGCACATGGCTACACGTCTGGGCTTCTGGACCCATGTCCCTGCTCAGTGAGCAGCTCTaGCCAGTTCTTCTCCATCTC	+
Preference number: 5 (lower is better) Translates to: KQVPCTWLHVWASGPMSLLSEQL*PVLLHL Trigger: GAGATGGAGAAGAACTGGCAAGAGCTGCTCACTGAG...CAGGGACATGGGTCCAGAAGCCCAGACGTGTAGCCATGTGCATGGTACTTGTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109314.9 ENSMUST00000167959.2
CDS-3UTR CAA 90 bp	TTATTGAGAAACAAGTACCATGCACATGGCTACACGTCTGGGCTTCTGGACCCACTCAGTGAGCAGCTCTaGCCAGTTCTTCTCCATCTC	+
Preference number: 5 (lower is better) Translates to: LLRNKYHAHGYTSGLLDPLSEQL*PVLLHL Trigger: GAGATGGAGAAGAACTGGCAAGAGCTGCTCACTGAG...TGGGTCCAGAAGCCCAGACGTGTAGCCATGTGCATGGTACTTGTTTCTCAATAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109314.9 ENSMUST00000167959.2
CDS-3UTR CAA 90 bp	TTATTGAGAAACAAGTACCATGCACATGGCTACACGTCTGGGCTTCTGGACCCATTCTCCATCTCCTCTTaGCAGTTGAGGAAGGCGTCT	+
Preference number: 5 (lower is better) Translates to: LLRNKYHAHGYTSGLLDPFSISS*QLRKAS Trigger: AGACGCCTTCCTCAACTGCAAAGAGGAGATGGAGAA...TGGGTCCAGAAGCCCAGACGTGTAGCCATGTGCATGGTACTTGTTTCTCAATAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109314.9 ENSMUST00000167959.2
CDS-3UTR CAA 90 bp	ATAAGTTTATTGAGAAACAAGTACCATGCACATGGCTACACGTCTGGGCTTCTGAGCTTTTCCAGGTCCTaGTTCAGGTCAGACAGCATT	+
Preference number: 5 (lower is better) Translates to: ISLLRNKYHAHGYTSGLLSFSRS*FRSDSI Trigger: AATGCTGTCTGACCTGAACAAGGACCTGGAAAAGCT...CAGAAGCCCAGACGTGTAGCCATGTGCATGGTACTTGTTTCTCAATAAACTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109314.9 ENSMUST00000167959.2
CDS TCA 72 bp	GGCGCATGGACTCTGCTAGTGTGGGGTTCGTACGCATaGCCACCATATCATAGGCCATCCAGGTTGCCTGCA	+
Preference number: 6 (lower is better) Translates to: GAWTLLVWGSYA*PPYHRPSRLPA Trigger: TGCAGGCAACCTGGATGGCCTATGATATGGTGGTCATGCGTACGAACCCCACACTAGCAGAGTCCATGCGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109314.9 ENSMUST00000167959.2

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