Pregenerated sensors for SYCE2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003824Ensembl transcript IDs: ENSMUST00000003922.6, ENSMUST00000136026.8, ENSMUST00000170296.2
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCAGAAGTCAGCATTCACCATCTTTGTAATTCTGTTCTTCGCAAGTaGGAACCTCAGACTGGACACATAGGTCCTTGTACACCGTTTCCA | + |
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Preference number: 1 (lower is better) Translates to: AEVSIHHLCNSVLRK*EPQTGHIGPCTPFP Trigger: TGGAAACGGTGTACAAGGACCTATGTGTCCAGTCTGAGGTTCCCACTTGCGAAGAACAGAATTACAAAGATGGTGAATGCTGACTTCTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003922.6 |
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| 3UTR-3UTR TCA 90 bp | ACTACAGATGTGGGTTGGGAGAATTTGCTAAGGCAAGGCTTATGGCAGGGTCAATTTGGCTGCTGTCCCTaGAGGTGGGAAAGAGCAAAG | + |
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Preference number: 2 (lower is better) Translates to: TTDVGWENLLRQGLWQGQFGCCP*RWERAK Trigger: CTTTGCTCTTTCCCACCTTCAGGGACAGCAGCCAAA...TTGACCCTGCCATAAGCCTTGCCTTAGCAAATTCTCCCAACCCACATCTGTAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136026.8 |
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| 3UTR-3UTR TCA 90 bp | GAGAATTTGCTAAGGCAAGGCTTATGGCAGGGTCAAACCTTGTCACACTACGGTTGTGCCTTCTCACATTaGGATGGAAGCCTCTTAGCA | + |
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Preference number: 2 (lower is better) Translates to: ENLLRQGLWQGQTLSHYGCAFSH*DGSLLA Trigger: TGCTAAGAGGCTTCCATCTCAATGTGAGAAGGCACA...ACCGTAGTGTGACAAGGTTTGACCCTGCCATAAGCCTTGCCTTAGCAAATTCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003922.6 ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| 3UTR CAA 90 bp | TTCTGTTCTTCGCAAGTGGGAACCTCAGACTGGACACATAGGTCCTaGTACACCGTTTCCACAGTTTGGCAGACTTGTTTAAGCTCCATT | + |
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Preference number: 2 (lower is better) Translates to: FCSSQVGTSDWTHRS*YTVSTVWQTCLSSI Trigger: AATGGAGCTTAAACAAGTCTGCCAAACTGTGGAAACGGTGTACAAGGACCTATGTGTCCAGTCTGAGGTTCCCACTTGCGAAGAACAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003922.6 |
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| 3UTR-3UTR TCA 90 bp | ACTACAGATGTGGGTTGGGAGAATTTGCTAAGGCAAGGCTTATGGCAGGGTCAAGTAGTCTTTCCTGAATaGTTTTGCTGTGGTGGCTGT | + |
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Preference number: 2 (lower is better) Translates to: TTDVGWENLLRQGLWQGQVVFPE*FCCGGC Trigger: ACAGCCACCACAGCAAAATCATTCAGGAAAGACTAC...TTGACCCTGCCATAAGCCTTGCCTTAGCAAATTCTCCCAACCCACATCTGTAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003922.6 |
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| 3UTR-3UTR CCA 90 bp | ATATCAGCATGCCTCAAACAGCAGCCTCTGTGCCTTCTCACATTGAGATGGAAGACCGTTTCCACAGTTTaGCAGACTTGTTTAAGCTCC | + |
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Preference number: 2 (lower is better) Translates to: ISACLKQQPLCLLTLRWKTVSTV*QTCLSS Trigger: GGAGCTTAAACAAGTCTGCCAAACTGTGGAAACGGT...CTTCCATCTCAATGTGAGAAGGCACAGAGGCTGCTGTTTGAGGCATGCTGATAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003922.6 |
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| 3UTR-3UTR GCA 90 bp | TGTGGGTTGGGAGAATTTGCTAAGGCAAGGCTTATGGCAGGGTCAAACCTTGTCCAGATGGTTGATCTTTaGCATCTTCTGGGTAAATTC | + |
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Preference number: 2 (lower is better) Translates to: CGLGEFAKARLMAGSNLVQMVDL*HLLGKF Trigger: GAATTTACCCAGAAGATGGCAAAGATCAACCATCTG...GACAAGGTTTGACCCTGCCATAAGCCTTGCCTTAGCAAATTCTCCCAACCCACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003922.6 |
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| 3UTR-3UTR CCA 90 bp | CCCACAGTCTTTGTAAAAGCCAGCACAGTAACATGTGTCTGTAACCCAGTGCTTGTAAAAAGGAAACTATaGTTTTGGCTGCTGTCCCTG | + |
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Preference number: 2 (lower is better) Translates to: PTVFVKASTVTCVCNPVLVKRKL*FWLLSL Trigger: CAGGGACAGCAGCCAAAACCATAGTTTCCTTTTTAC...AAGCACTGGGTTACAGACACATGTTACTGTGCTGGCTTTTACAAAGACTGTGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000136026.8 |
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| 3UTR CAA 90 bp | ATGACCAGGGTGAAATCAAAACATTTAATCAACTACAGATGTGGGTaGGGAGAATTTGCTAAGGCAAGGCTTATGGCAGGGTCAAACCTT | + |
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Preference number: 2 (lower is better) Translates to: MTRVKSKHLINYRCG*GEFAKARLMAGSNL Trigger: AAGGTTTGACCCTGCCATAAGCCTTGCCTTAGCAAATTCTCCCAACCCACATCTGTAGTTGATTAAATGTTTTGATTTCACCCTGGTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003922.6 ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| 3UTR CAA 90 bp | AGTGAGAGGGAGGGGCGAGGTGAGAGCCTACAATATGAGCATAATTaGACACGGATCAGATTTAGGCTTTTGGAAATAAGTGATAGTATT | + |
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Preference number: 2 (lower is better) Translates to: SEREGRGESLQYEHN*TRIRFRLLEISDSI Trigger: AATACTATCACTTATTTCCAAAAGCCTAAATCTGATCCGTGTCAAATTATGCTCATATTGTAGGCTCTCACCTCGCCCCTCCCTCTCACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136026.8 |
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| 3UTR-3UTR TCA 90 bp | GACCAGGGTGAAATCAAAACATTTAATCAACTACAGATGTGGGTTGGGAGAATTCCATTTCCAGATGGTTaGTCTTTGCCATCTTCTGGG | + |
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Preference number: 2 (lower is better) Translates to: DQGEIKTFNQLQMWVGRIPFPDG*SLPSSG Trigger: CCCAGAAGATGGCAAAGATCAACCATCTGGAAATGG...AATTCTCCCAACCCACATCTGTAGTTGATTAAATGTTTTGATTTCACCCTGGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003922.6 |
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| 3UTR-3UTR GCA 90 bp | GTGAAATCAAAACATTTAATCAACTACAGATGTGGGTTGGGAGAATTTGCTAAGAAACAGCAGCCTCTGTaGCTTCTCACATTGAGATGG | + |
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Preference number: 2 (lower is better) Translates to: VKSKHLINYRCGLGEFAKKQQPL*LLTLRW Trigger: CCATCTCAATGTGAGAAGGCACAGAGGCTGCTGTTT...CTTAGCAAATTCTCCCAACCCACATCTGTAGTTGATTAAATGTTTTGATTTCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003922.6 ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| 3UTR-3UTR CCA 90 bp | AATTTGCTAAGGCAAGGCTTATGGCAGGGTCAAACCTTGTCACACTACGGTAATATCTTTGCCATCTTCTaGGTAAATTCTTGTAGTCTT | + |
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Preference number: 2 (lower is better) Translates to: NLLRQGLWQGQTLSHYGNIFAIF*VNSCSL Trigger: AAGACTACAAGAATTTACCCAGAAGATGGCAAAGAT...ATTACCGTAGTGTGACAAGGTTTGACCCTGCCATAAGCCTTGCCTTAGCAAATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003922.6 |
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| 3UTR-3UTR CCA 90 bp | CAGGGTGAAATCAAAACATTTAATCAACTACAGATGTGGGTTGGGAGAATTTGCCTTCTCACATTGAGATaGAAGCCTCTTAGCAGAAGT | + |
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Preference number: 2 (lower is better) Translates to: QGEIKTFNQLQMWVGRICLLTLR*KPLSRS Trigger: ACTTCTGCTAAGAGGCTTCCATCTCAATGTGAGAAG...GCAAATTCTCCCAACCCACATCTGTAGTTGATTAAATGTTTTGATTTCACCCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003922.6 |
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| 3UTR-3UTR CAA 90 bp | GAATCCCCTGTGATGCATGCTAAGCAGGAGCACCAGCTTCACGGGCAGGGAAGCAAGGAAACTATGGTTTaGGCTGCTGTCCCTGAAGGT | + |
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Preference number: 3 (lower is better) Translates to: ESPVMHAKQEHQLHGQGSKETMV*AAVPEG Trigger: ACCTTCAGGGACAGCAGCCAAAACCATAGTTTCCTT...GCTTCCCTGCCCGTGAAGCTGGTGCTCCTGCTTAGCATGCATCACAGGGGATTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136026.8 |
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| 3UTR TCA 72 bp | CATGCCTCAAACAGCAGCCTCTGTGCCTTCTCACATTaGGATGGAAGCCTCTTAGCAGAAGTCAGCATTCAC | + |
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Preference number: 3 (lower is better) Translates to: HASNSSLCAFSH*DGSLLAEVSIH Trigger: GTGAATGCTGACTTCTGCTAAGAGGCTTCCATCTCAATGTGAGAAGGCACAGAGGCTGCTGTTTGAGGCATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003922.6 |
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| 3UTR-3UTR CAA 90 bp | GAGAATTTGCTAAGGCAAGGCTTATGGCAGGGTCAAACCTTGTCACACTACGGTAGAGCATTGGTGGCTTaGTGTTGGGTTACAGAACTA | + |
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Preference number: 3 (lower is better) Translates to: ENLLRQGLWQGQTLSHYGRALVA*CWVTEL Trigger: TAGTTCTGTAACCCAACACAAAGCCACCAATGCTCT...ACCGTAGTGTGACAAGGTTTGACCCTGCCATAAGCCTTGCCTTAGCAAATTCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003922.6 ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| 3UTR-3UTR CAA 90 bp | TGCCTTCTCACATTGAGATGGAAGCCTCTTAGCAGAAGTCAGCATTCACCATCTTCCATTTCCAGATGGTaGATCTTTGCCATCTTCTGG | + |
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Preference number: 3 (lower is better) Translates to: CLLTLRWKPLSRSQHSPSSISRW*IFAIFW Trigger: CCAGAAGATGGCAAAGATCAACCATCTGGAAATGGA...AGATGGTGAATGCTGACTTCTGCTAAGAGGCTTCCATCTCAATGTGAGAAGGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003922.6 |
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| 3UTR-3UTR CAA 90 bp | CCCACAGTCTTTGTAAAAGCCAGCACAGTAACATGTGTCTGTAACCCAGTGCTTTTAGCACAAAGAGCATaGGTGGCTTTGTGTTGGGTT | + |
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Preference number: 3 (lower is better) Translates to: PTVFVKASTVTCVCNPVLLAQRA*VALCWV Trigger: AACCCAACACAAAGCCACCAATGCTCTTTGTGCTAA...AAGCACTGGGTTACAGACACATGTTACTGTGCTGGCTTTTACAAAGACTGTGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136026.8 |
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| 3UTR GCA 72 bp | AAAACAATATCAGCATGCCTCAAACAGCAGCCTCTGTaGCTTCTCACATTGAGATGGAAGCCTCTTAGCAGA | + |
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Preference number: 3 (lower is better) Translates to: KTISACLKQQPL*LLTLRWKPLSR Trigger: TCTGCTAAGAGGCTTCCATCTCAATGTGAGAAGGCACAGAGGCTGCTGTTTGAGGCATGCTGATATTGTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003922.6 ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| 3UTR CCA 72 bp | AGCATTCACCATCTTTGTAATTCTGTTCTTCGCAAGTaGGAACCTCAGACTGGACACATAGGTCCTTGTACA | + |
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Preference number: 3 (lower is better) Translates to: SIHHLCNSVLRK*EPQTGHIGPCT Trigger: TGTACAAGGACCTATGTGTCCAGTCTGAGGTTCCCACTTGCGAAGAACAGAATTACAAAGATGGTGAATGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003922.6 |
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| 3UTR-3UTR CAA 90 bp | GCAGGGAAGCTTCTAGACAGAAAAGGCAGAATATATGGGATATCTTCCCTGCCTCAATATGAGCATAATTaGACACGGATCAGATTTAGG | + |
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Preference number: 3 (lower is better) Translates to: AGKLLDRKGRIYGISSLPQYEHN*TRIRFR Trigger: CCTAAATCTGATCCGTGTCAAATTATGCTCATATTG...AGGCAGGGAAGATATCCCATATATTCTGCCTTTTCTGTCTAGAAGCTTCCCTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136026.8 |
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| 3UTR CCA 72 bp | ATAGTATTTGACTGTGTAAAAAGGAAACTATGGTTTTaGCTGCTGTCCCTGAAGGTGGGAAAGAGCAAAGGA | + |
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Preference number: 3 (lower is better) Translates to: IVFDCVKRKLWF*LLSLKVGKSKG Trigger: TCCTTTGCTCTTTCCCACCTTCAGGGACAGCAGCCAAAACCATAGTTTCCTTTTTACACAGTCAAATACTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000136026.8 |
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| CDS-3UTR GCA 90 bp | GCATGCCTCAAACAGCAGCCTCTGTGCCTTCTCACATTGAGATGGAAGCCTCTTGGAGGCGCGGCCACCTaGGAGCGCAGCCAGCTTCCG | + |
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Preference number: 4 (lower is better) Translates to: ACLKQQPLCLLTLRWKPLGGAAT*ERSQLP Trigger: CGGAAGCTGGCTGCGCTCGCAGGTGGCCGCGCCTCC...AAGAGGCTTCCATCTCAATGTGAGAAGGCACAGAGGCTGCTGTTTGAGGCATGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170296.2 |
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| CDS-3UTR CCA 90 bp | TCAACTACAGATGTGGGTTGGGAGAATTTGCTAAGGCAAGGCTTATGGCAGGGTCTGGCAGCTGGCAACTaGCACTCGGGGCCACTGAGC | + |
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Preference number: 4 (lower is better) Translates to: STTDVGWENLLRQGLWQGLAAGN*HSGPLS Trigger: GCTCAGTGGCCCCGAGTGCCAGTTGCCAGCTGCCAG...ACCCTGCCATAAGCCTTGCCTTAGCAAATTCTCCCAACCCACATCTGTAGTTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS-3UTR CCA 90 bp | TCAGACTGGACACATAGGTCCTTGTACACCGTTTCCACAGTTTGGCAGACTTGTCCGGGCGTCTCCTCGTaGTTCTCACTCTGCCGATGC | + |
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Preference number: 4 (lower is better) Translates to: SDWTHRSLYTVSTVWQTCPGVSS*FSLCRC Trigger: GCATCGGCAGAGTGAGAACCACGAGGAGACGCCCGG...ACAAGTCTGCCAAACTGTGGAAACGGTGTACAAGGACCTATGTGTCCAGTCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003922.6 |
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| CDS-3UTR CCA 90 bp | ACTACAGATGTGGGTTGGGAGAATTTGCTAAGGCAAGGCTTATGGCAGGGTCAACCGGGCGTCTCCTCGTaGTTCTCACTCTGCCGATGC | + |
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Preference number: 4 (lower is better) Translates to: TTDVGWENLLRQGLWQGQPGVSS*FSLCRC Trigger: GCATCGGCAGAGTGAGAACCACGAGGAGACGCCCGG...TTGACCCTGCCATAAGCCTTGCCTTAGCAAATTCTCCCAACCCACATCTGTAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003922.6 ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| 3UTR CAA 72 bp | GCATGCCTCAAACAGCAGCCTCTGTGCCTTCTCACATaGAGATGGAAGCCTCTTAGCAGAAGTCAGCATTCA | + |
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Preference number: 4 (lower is better) Translates to: ACLKQQPLCLLT*RWKPLSRSQHS Trigger: TGAATGCTGACTTCTGCTAAGAGGCTTCCATCTCAATGTGAGAAGGCACAGAGGCTGCTGTTTGAGGCATGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003922.6 |
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| CDS-3UTR TCA 90 bp | GGTTGGGAGAATTTGCTAAGGCAAGGCTTATGGCAGGGTCAAACCTTGTCACACCCATTTCCAGATGGTTaGTCTTTGCCATCTTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: GWENLLRQGLWQGQTLSHPFPDG*SLPSSG Trigger: CCCAGAAGATGGCAAAGATCAACCATCTGGAAATGG...GTGTGACAAGGTTTGACCCTGCCATAAGCCTTGCCTTAGCAAATTCTCCCAACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS-3UTR CCA 90 bp | TGGTTTTGGCTGCTGTCCCTGAAGGTGGGAAAGAGCAAAGGACCAGCCATGTTTTTGGTCATAAGTGCATaGTCCTTCTGCCTGCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: WFWLLSLKVGKSKGPAMFLVISA*SFCLLS Trigger: TGAAAGCAGGCAGAAGGACCATGCACTTATGACCAA...AAACATGGCTGGTCCTTTGCTCTTTCCCACCTTCAGGGACAGCAGCCAAAACCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000136026.8 |
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| 3UTR CAA 72 bp | TCGCAAGTGGGAACCTCAGACTGGACACATAGGTCCTaGTACACCGTTTCCACAGTTTGGCAGACTTGTTTA | + |
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Preference number: 4 (lower is better) Translates to: SQVGTSDWTHRS*YTVSTVWQTCL Trigger: TAAACAAGTCTGCCAAACTGTGGAAACGGTGTACAAGGACCTATGTGTCCAGTCTGAGGTTCCCACTTGCGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003922.6 |
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| CDS-3UTR GCA 90 bp | TGGGAGAATTTGCTAAGGCAAGGCTTATGGCAGGGTCAAACCTTGTCACACTACGAAGTTGGTCATAAGTaGATGGTCCTTCTGCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: WENLLRQGLWQGQTLSHYEVGHK*MVLLPA Trigger: AGCAGGCAGAAGGACCATGCACTTATGACCAACTTC...GTAGTGTGACAAGGTTTGACCCTGCCATAAGCCTTGCCTTAGCAAATTCTCCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS-3UTR CCA 90 bp | ATGATCATCAGTCTTTCCAATTCTGGAATAAAGTATGACCAGGGTGAAATCAAACTGGCAGCTGGCAACTaGCACTCGGGGCCACTGAGC | + |
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Preference number: 4 (lower is better) Translates to: MIISLSNSGIKYDQGEIKLAAGN*HSGPLS Trigger: GCTCAGTGGCCCCGAGTGCCAGTTGCCAGCTGCCAG...TTTGATTTCACCCTGGTCATACTTTATTCCAGAATTGGAAAGACTGATGATCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS-3UTR TCA 90 bp | TTGGGAGAATTTGCTAAGGCAAGGCTTATGGCAGGGTCAAACCTTGTCACACTACCATTTCCAGATGGTTaGTCTTTGCCATCTTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: LGEFAKARLMAGSNLVTLPFPDG*SLPSSG Trigger: CCCAGAAGATGGCAAAGATCAACCATCTGGAAATGG...TAGTGTGACAAGGTTTGACCCTGCCATAAGCCTTGCCTTAGCAAATTCTCCCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS-3UTR CCA 90 bp | GTGAAATCAAAACATTTAATCAACTACAGATGTGGGTTGGGAGAATTTGCTAAGCCGGGCGTCTCCTCGTaGTTCTCACTCTGCCGATGC | + |
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Preference number: 4 (lower is better) Translates to: VKSKHLINYRCGLGEFAKPGVSS*FSLCRC Trigger: GCATCGGCAGAGTGAGAACCACGAGGAGACGCCCGG...CTTAGCAAATTCTCCCAACCCACATCTGTAGTTGATTAAATGTTTTGATTTCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003922.6 ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS-3UTR TCA 90 bp | TTGGGAGAATTTGCTAAGGCAAGGCTTATGGCAGGGTCAAACCTTGTCACACTAGTAGTCTTTCCTGAATaGTTTTGCTGTGGTGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: LGEFAKARLMAGSNLVTLVVFPE*FCCGGC Trigger: ACAGCCACCACAGCAAAATCATTCAGGAAAGACTAC...TAGTGTGACAAGGTTTGACCCTGCCATAAGCCTTGCCTTAGCAAATTCTCCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS-3UTR GCA 90 bp | TGGGAGAATTTGCTAAGGCAAGGCTTATGGCAGGGTCAAACCTTGTCACACTACAGTGCATGGTCCTTCTaGCTGCTTTCATTGATGTTT | + |
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Preference number: 4 (lower is better) Translates to: WENLLRQGLWQGQTLSHYSAWSF*LLSLMF Trigger: AAACATCAATGAAAGCAGGCAGAAGGACCATGCACT...GTAGTGTGACAAGGTTTGACCCTGCCATAAGCCTTGCCTTAGCAAATTCTCCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS-3UTR CCA 90 bp | TGTGGGTTGGGAGAATTTGCTAAGGCAAGGCTTATGGCAGGGTCAAACCTTGTCTTTTCAATCAGTTCCTaGGCTTTCTTCTTCAGGGTT | + |
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Preference number: 4 (lower is better) Translates to: CGLGEFAKARLMAGSNLVFSISS*AFFFRV Trigger: AACCCTGAAGAAGAAAGCCCAGGAACTGATTGAAAA...GACAAGGTTTGACCCTGCCATAAGCCTTGCCTTAGCAAATTCTCCCAACCCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS-3UTR TCA 90 bp | AAAACAATATCAGCATGCCTCAAACAGCAGCCTCTGTGCCTTCTCACATTGAGACTTTTCTGTCAGATCTaGGACCTTCATCTTGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: KTISACLKQQPLCLLTLRLFCQI*DLHLEA Trigger: AGCCTCAAGATGAAGGTCTCAGATCTGACAGAAAAG...TCTCAATGTGAGAAGGCACAGAGGCTGCTGTTTGAGGCATGCTGATATTGTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS-3UTR CCA 90 bp | TGGTTTTGGCTGCTGTCCCTGAAGGTGGGAAAGAGCAAAGGACCAGCCATGTTTATCTTTGCCATCTTCTaGGTAAATTCTTGTAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: WFWLLSLKVGKSKGPAMFIFAIF*VNSCSL Trigger: AAGACTACAAGAATTTACCCAGAAGATGGCAAAGAT...AAACATGGCTGGTCCTTTGCTCTTTCCCACCTTCAGGGACAGCAGCCAAAACCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136026.8 |
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| CDS-3UTR TCA 90 bp | CTGTGTAAAAAGGAAACTATGGTTTTGGCTGCTGTCCCTGAAGGTGGGAAAGAGTCTGCCTGCTTTCATTaGTGTTTTCAATCAGTTCCT | + |
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Preference number: 4 (lower is better) Translates to: LCKKETMVLAAVPEGGKESACFH*CFQSVP Trigger: AGGAACTGATTGAAAACATCAATGAAAGCAGGCAGA...CTCTTTCCCACCTTCAGGGACAGCAGCCAAAACCATAGTTTCCTTTTTACACAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000136026.8 |
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| CDS-3UTR GCA 90 bp | CTGTGTAAAAAGGAAACTATGGTTTTGGCTGCTGTCCCTGAAGGTGGGAAAGAGCAGATGGTTGATCTTTaGCATCTTCTGGGTAAATTC | + |
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Preference number: 4 (lower is better) Translates to: LCKKETMVLAAVPEGGKEQMVDL*HLLGKF Trigger: GAATTTACCCAGAAGATGGCAAAGATCAACCATCTG...CTCTTTCCCACCTTCAGGGACAGCAGCCAAAACCATAGTTTCCTTTTTACACAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000136026.8 |
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| CDS-3UTR CCA 90 bp | AATATAAAGGAGGGCTGTGGGGATGGCTCAATGAGCCCATCAGTTGCCATAAAATTTTCAATCAGTTCCTaGGCTTTCTTCTTCAGGGTT | + |
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Preference number: 4 (lower is better) Translates to: NIKEGCGDGSMSPSVAIKFSISS*AFFFRV Trigger: AACCCTGAAGAAGAAAGCCCAGGAACTGATTGAAAA...TTTTATGGCAACTGATGGGCTCATTGAGCCATCCCCACAGCCCTCCTTTATATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000136026.8 |
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| CDS-3UTR CCA 90 bp | TGTGGGTTGGGAGAATTTGCTAAGGCAAGGCTTATGGCAGGGTCAAACCTTGTCATCTTTGCCATCTTCTaGGTAAATTCTTGTAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: CGLGEFAKARLMAGSNLVIFAIF*VNSCSL Trigger: AAGACTACAAGAATTTACCCAGAAGATGGCAAAGAT...GACAAGGTTTGACCCTGCCATAAGCCTTGCCTTAGCAAATTCTCCCAACCCACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| 3UTR CAA 72 bp | GAGGGGCGAGGTGAGAGCCTACAATATGAGCATAATTaGACACGGATCAGATTTAGGCTTTTGGAAATAAGT | + |
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Preference number: 4 (lower is better) Translates to: EGRGESLQYEHN*TRIRFRLLEIS Trigger: ACTTATTTCCAAAAGCCTAAATCTGATCCGTGTCAAATTATGCTCATATTGTAGGCTCTCACCTCGCCCCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136026.8 |
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| 3UTR CAA 72 bp | GTGAAATCAAAACATTTAATCAACTACAGATGTGGGTaGGGAGAATTTGCTAAGGCAAGGCTTATGGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: VKSKHLINYRCG*GEFAKARLMAG Trigger: CCCTGCCATAAGCCTTGCCTTAGCAAATTCTCCCAACCCACATCTGTAGTTGATTAAATGTTTTGATTTCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003922.6 ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS-3UTR TCA 90 bp | CAGGGTGAAATCAAAACATTTAATCAACTACAGATGTGGGTTGGGAGAATTTGCCTTTTCTGTCAGATCTaGGACCTTCATCTTGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: QGEIKTFNQLQMWVGRICLFCQI*DLHLEA Trigger: AGCCTCAAGATGAAGGTCTCAGATCTGACAGAAAAG...GCAAATTCTCCCAACCCACATCTGTAGTTGATTAAATGTTTTGATTTCACCCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS-3UTR CCA 90 bp | CAGGGTGAAATCAAAACATTTAATCAACTACAGATGTGGGTTGGGAGAATTTGCTTGGTCATAAGTGCATaGTCCTTCTGCCTGCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: QGEIKTFNQLQMWVGRICLVISA*SFCLLS Trigger: TGAAAGCAGGCAGAAGGACCATGCACTTATGACCAA...GCAAATTCTCCCAACCCACATCTGTAGTTGATTAAATGTTTTGATTTCACCCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS-3UTR CCA 90 bp | CAGGGTGAAATCAAAACATTTAATCAACTACAGATGTGGGTTGGGAGAATTTGCACCGTTTCCACAGTTTaGCAGACTTGTTTAAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: QGEIKTFNQLQMWVGRICTVSTV*QTCLSS Trigger: GGAGCTTAAACAAGTCTGCCAAACTGTGGAAACGGT...GCAAATTCTCCCAACCCACATCTGTAGTTGATTAAATGTTTTGATTTCACCCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS-3UTR GCA 90 bp | GTGAAATCAAAACATTTAATCAACTACAGATGTGGGTTGGGAGAATTTGCTAAGGAAGTTGGTCATAAGTaGATGGTCCTTCTGCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: VKSKHLINYRCGLGEFAKEVGHK*MVLLPA Trigger: AGCAGGCAGAAGGACCATGCACTTATGACCAACTTC...CTTAGCAAATTCTCCCAACCCACATCTGTAGTTGATTAAATGTTTTGATTTCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS-3UTR TCA 90 bp | GACCAGGGTGAAATCAAAACATTTAATCAACTACAGATGTGGGTTGGGAGAATTTCTGCCTGCTTTCATTaGTGTTTTCAATCAGTTCCT | + |
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Preference number: 4 (lower is better) Translates to: DQGEIKTFNQLQMWVGRISACFH*CFQSVP Trigger: AGGAACTGATTGAAAACATCAATGAAAGCAGGCAGA...AATTCTCCCAACCCACATCTGTAGTTGATTAAATGTTTTGATTTCACCCTGGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS-3UTR CCA 90 bp | ATGATCATCAGTCTTTCCAATTCTGGAATAAAGTATGACCAGGGTGAAATCAAAACCGTTTCCACAGTTTaGCAGACTTGTTTAAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: MIISLSNSGIKYDQGEIKTVSTV*QTCLSS Trigger: GGAGCTTAAACAAGTCTGCCAAACTGTGGAAACGGT...TTTGATTTCACCCTGGTCATACTTTATTCCAGAATTGGAAAGACTGATGATCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS-3UTR GCA 90 bp | GTGAAATCAAAACATTTAATCAACTACAGATGTGGGTTGGGAGAATTTGCTAAGAGTGCATGGTCCTTCTaGCTGCTTTCATTGATGTTT | + |
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Preference number: 4 (lower is better) Translates to: VKSKHLINYRCGLGEFAKSAWSF*LLSLMF Trigger: AAACATCAATGAAAGCAGGCAGAAGGACCATGCACT...CTTAGCAAATTCTCCCAACCCACATCTGTAGTTGATTAAATGTTTTGATTTCAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS CCA 90 bp | TCACTCTGCCGATGCTCTCCGCTCTCCACAATCGCCGGCGGCTCCTaGTCCTTTAACTCCACGGGAGGCGCGGCCACTCCGTGGCGCTCC | + |
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Preference number: 5 (lower is better) Translates to: SLCRCSPLSTIAGGS*SFNSTGGAATPWRS Trigger: GGAGCGCCACGGAGTGGCCGCGCCTCCCGTGGAGTTAAAGGACCAGGAGCCGCCGGCGATTGTGGAGAGCGGAGAGCATCGGCAGAGTGA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003922.6 ENSMUST00000136026.8 |
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| CDS CCA 90 bp | TCACTCTGCCGATGCTCTCCGCTCTCCACAATCGCCGGCGGCTCCTaGTCCTTTAACTCCACGGGAGGCGCGGCCACCTGCGAGCGCAGC | + |
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Preference number: 5 (lower is better) Translates to: SLCRCSPLSTIAGGS*SFNSTGGAATCERS Trigger: GCTGCGCTCGCAGGTGGCCGCGCCTCCCGTGGAGTTAAAGGACCAGGAGCCGCCGGCGATTGTGGAGAGCGGAGAGCATCGGCAGAGTGA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170296.2 |
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| CDS CCA 90 bp | AGCTGGCAACTGGCACTCGGGGCCACTGAGCCGGGCGTCTCCTCGTaGTTCTCACTCTGCCGATGCTCTCCGCTCTCCACAATCGCCGGC | + |
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Preference number: 5 (lower is better) Translates to: SWQLALGATEPGVSS*FSLCRCSPLSTIAG Trigger: GCCGGCGATTGTGGAGAGCGGAGAGCATCGGCAGAGTGAGAACCACGAGGAGACGCCCGGCTCAGTGGCCCCGAGTGCCAGTTGCCAGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS TCA 90 bp | AGAGGAGAAGGGTCCTGGCAGCTGGCAACTGGCACTCGGGGCCACTaGGCCGGGCGTCTCCTCGTGGTTCTCACTCTGCCGATGCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: RGEGSWQLATGTRGH*AGRLLVVLTLPMLS Trigger: GGAGAGCATCGGCAGAGTGAGAACCACGAGGAGACGCCCGGCTCAGTGGCCCCGAGTGCCAGTTGCCAGCTGCCAGGACCCTTCTCCTCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS CCA 90 bp | AGGGTTTCAATGCTAGAGTCCAGAGAGGAGAAGGGTCCTGGCAGCTaGCAACTGGCACTCGGGGCCACTGAGCCGGGCGTCTCCTCGTGG | + |
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Preference number: 5 (lower is better) Translates to: RVSMLESREEKGPGS*QLALGATEPGVSSW Trigger: CCACGAGGAGACGCCCGGCTCAGTGGCCCCGAGTGCCAGTTGCCAGCTGCCAGGACCCTTCTCCTCTCTGGACTCTAGCATTGAAACCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS-3UTR CAA 90 bp | CCCACAGTCTTTGTAAAAGCCAGCACAGTAACATGTGTCTGTAACCCAGTGCTTTCCATTTCCAGATGGTaGATCTTTGCCATCTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: PTVFVKASTVTCVCNPVLSISRW*IFAIFW Trigger: CCAGAAGATGGCAAAGATCAACCATCTGGAAATGGA...AAGCACTGGGTTACAGACACATGTTACTGTGCTGGCTTTTACAAAGACTGTGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136026.8 |
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| CDS-3UTR CAA 90 bp | AAAACAATATCAGCATGCCTCAAACAGCAGCCTCTGTGCCTTCTCACATTGAGATCCATTTCCAGATGGTaGATCTTTGCCATCTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: KTISACLKQQPLCLLTLRSISRW*IFAIFW Trigger: CCAGAAGATGGCAAAGATCAACCATCTGGAAATGGA...TCTCAATGTGAGAAGGCACAGAGGCTGCTGTTTGAGGCATGCTGATATTGTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS TCA 72 bp | GGGTCCTGGCAGCTGGCAACTGGCACTCGGGGCCACTaGGCCGGGCGTCTCCTCGTGGTTCTCACTCTGCCG | + |
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Preference number: 6 (lower is better) Translates to: GSWQLATGTRGH*AGRLLVVLTLP Trigger: CGGCAGAGTGAGAACCACGAGGAGACGCCCGGCTCAGTGGCCCCGAGTGCCAGTTGCCAGCTGCCAGGACCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS CCA 72 bp | CGATGCTCTCCGCTCTCCACAATCGCCGGCGGCTCCTaGTCCTTTAACTCCACGGGAGGCGCGGCCACTCCG | + |
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Preference number: 6 (lower is better) Translates to: RCSPLSTIAGGS*SFNSTGGAATP Trigger: CGGAGTGGCCGCGCCTCCCGTGGAGTTAAAGGACCAGGAGCCGCCGGCGATTGTGGAGAGCGGAGAGCATCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003922.6 ENSMUST00000136026.8 |
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| CDS CCA 72 bp | CGATGCTCTCCGCTCTCCACAATCGCCGGCGGCTCCTaGTCCTTTAACTCCACGGGAGGCGCGGCCACCTGC | + |
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Preference number: 6 (lower is better) Translates to: RCSPLSTIAGGS*SFNSTGGAATC Trigger: GCAGGTGGCCGCGCCTCCCGTGGAGTTAAAGGACCAGGAGCCGCCGGCGATTGTGGAGAGCGGAGAGCATCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170296.2 |
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| CDS CCA 72 bp | CTGGCACTCGGGGCCACTGAGCCGGGCGTCTCCTCGTaGTTCTCACTCTGCCGATGCTCTCCGCTCTCCACA | + |
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Preference number: 6 (lower is better) Translates to: LALGATEPGVSS*FSLCRCSPLST Trigger: TGTGGAGAGCGGAGAGCATCGGCAGAGTGAGAACCACGAGGAGACGCCCGGCTCAGTGGCCCCGAGTGCCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS CCA 72 bp | AGTCCAGAGAGGAGAAGGGTCCTGGCAGCTGGCAACTaGCACTCGGGGCCACTGAGCCGGGCGTCTCCTCGT | + |
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Preference number: 6 (lower is better) Translates to: SPERRRVLAAGN*HSGPLSRASPR Trigger: ACGAGGAGACGCCCGGCTCAGTGGCCCCGAGTGCCAGTTGCCAGCTGCCAGGACCCTTCTCCTCTCTGGACT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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| CDS CCA 72 bp | ATGCTAGAGTCCAGAGAGGAGAAGGGTCCTGGCAGCTaGCAACTGGCACTCGGGGCCACTGAGCCGGGCGTC | + |
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Preference number: 6 (lower is better) Translates to: MLESREEKGPGS*QLALGATEPGV Trigger: GACGCCCGGCTCAGTGGCCCCGAGTGCCAGTTGCCAGCTGCCAGGACCCTTCTCCTCTCTGGACTCTAGCAT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136026.8 ENSMUST00000170296.2 |
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