Pregenerated sensors for SYCE1L (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033409Ensembl transcript IDs: ENSMUST00000034219.12, ENSMUST00000095173.3, ENSMUST00000212269.2
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | AATCATCTTTATTTCTTGGTAGTCCTTGAAGGAATGTaGGCACTGGTAGGTCCTTGTGGTTTAGCAGAGCGT | + |
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Preference number: 3 (lower is better) Translates to: NHLYFLVVLEGM*ALVGPCGLAER Trigger: ACGCTCTGCTAAACCACAAGGACCTACCAGTGCTCACATTCCTTCAAGGACTACCAAGAAATAAAGATGATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR GCA 90 bp | AGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATGATGCTGTTTCTGAGCTTCTGGGCTaGGCTGGGACTGCCCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: SRAFLSLATLLMSPNDAVSELLG*AGTAPP Trigger: TGGAGGGGCAGTCCCAGCGCAGCCCAGAAGCTCAGA...AACAGCATCATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR TCA 90 bp | AGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATGATGCTGTTGCTTCCTGGAGTGCTTaGGCCTCTCCCAGCTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: SRAFLSLATLLMSPNDAVASWSA*ASPSSS Trigger: TGAGGAGCTGGGAGAGGCTCAAGCACTCCAGGAAGC...AACAGCATCATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR GCA 90 bp | AGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATGATGCTGTTTCCTGGGCCAGTCGCTaGTGCAGGACATGGAACTCC | + |
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Preference number: 4 (lower is better) Translates to: SRAFLSLATLLMSPNDAVSWASR*CRTWNS Trigger: GGAGTTCCATGTCCTGCAGCAGCGACTGGCCCAGGA...AACAGCATCATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR CCA 90 bp | AGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATGATGCTGTTATCGTGCTGATCTCCTaGGCCAGTCGCTGCTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: SRAFLSLATLLMSPNDAVIVLIS*ASRCCR Trigger: CCTGCAGCAGCGACTGGCCCAGGAGATCAGCACGAT...AACAGCATCATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR CCA 90 bp | TTGTGGTTTAGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATTGTCCCAGGTCTCTCTaGCCTCCTGCAGCCGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: LWFSRAFLSLATLLMSPNCPRSL*PPAAAA Trigger: AGCAGCGGCTGCAGGAGGCCAGAGAGACCTGGGACA...ATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCTAAACCACAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR GCA 90 bp | AGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATGATGCTGTTCATGGCTTCCTGGAGTaGTTGAGCCTCTCCCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: SRAFLSLATLLMSPNDAVHGFLE*LSLSQL Trigger: GAGCTGGGAGAGGCTCAAGCACTCCAGGAAGCCATG...AACAGCATCATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR GCA 90 bp | AGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATGATGCTGTTGTCCTTGTGTTGCCTTaGCAGATCCGCCAGCCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: SRAFLSLATLLMSPNDAVVLVLP*QIRQPL Trigger: GAGAGGCTGGCGGATCTGGCAAGGCAACACAAGGAC...AACAGCATCATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR CCA 90 bp | AGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATGATGCTGTTATCAGGTCCTCAATCTaGGGCTCCAGGCTTCCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: SRAFLSLATLLMSPNDAVIRSSI*GSRLPS Trigger: AGAGGGAAGCCTGGAGCCCCAGATTGAGGACCTGAT...AACAGCATCATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR CCA 90 bp | TTGTGGTTTAGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATCGCTGCTGCAGGACATaGAACTCCCAGAGGTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: LWFSRAFLSLATLLMSPNRCCRT*NSQRSL Trigger: CAAGGACCTCTGGGAGTTCCATGTCCTGCAGCAGCG...ATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCTAAACCACAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR GCA 90 bp | TTGTGGTTTAGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATCAGCCTCTTGCTTTTTaGGCAGGACCTCCTCTAGGT | + |
|
Preference number: 4 (lower is better) Translates to: LWFSRAFLSLATLLMSPNQPLAF*AGPPLG Trigger: ACCTAGAGGAGGTCCTGCGCAAAAAGCAAGAGGCTG...ATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCTAAACCACAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR TCA 90 bp | TTGTGGTTTAGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATCTCTCTGCAAGAAGCTaGTCTTTCCTGTGCTCCATC | + |
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Preference number: 4 (lower is better) Translates to: LWFSRAFLSLATLLMSPNLSARS*SFLCSI Trigger: GATGGAGCACAGGAAAGATCAGCTTCTTGCAGAGAG...ATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCTAAACCACAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR GCA 90 bp | AGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATGATGCTGTTTTCTTTGCTGGACCTTaGTGCAGCTCATTAATGCGG | + |
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Preference number: 4 (lower is better) Translates to: SRAFLSLATLLMSPNDAVFFAGP*CSSLMR Trigger: CCGCATTAATGAGCTGCAGCAAGGTCCAGCAAAGAA...AACAGCATCATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR GCA 90 bp | AGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATGATGCTGTTCAGCAGAGTCCTCTCTaGAAGAAGCTGATCTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: SRAFLSLATLLMSPNDAVQQSPL*KKLIFP Trigger: AGGAAAGATCAGCTTCTTGCAGAGAGGACTCTGCTG...AACAGCATCATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR CCA 90 bp | AGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATGATGCTGTTAGCTCATTAATGCGGTaGATCAGGTCCTCAATCTGG | + |
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Preference number: 4 (lower is better) Translates to: SRAFLSLATLLMSPNDAVSSLMR*IRSSIW Trigger: CCAGATTGAGGACCTGATCCACCGCATTAATGAGCT...AACAGCATCATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR GCA 90 bp | AGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATGATGCTGTTAGGACCTCCTCTAGGTaGACTCTCTCTTCATTTAAG | + |
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Preference number: 4 (lower is better) Translates to: SRAFLSLATLLMSPNDAVRTSSR*TLSSFK Trigger: CTTAAATGAAGAGAGAGTGCACCTAGAGGAGGTCCT...AACAGCATCATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR CCA 90 bp | TTGTGGTTTAGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATGGATCTCTTCTTTGCTaGACCTTGCTGCAGCTCATT | + |
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Preference number: 4 (lower is better) Translates to: LWFSRAFLSLATLLMSPNGSLLC*TLLQLI Trigger: AATGAGCTGCAGCAAGGTCCAGCAAAGAAGAGATCC...ATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCTAAACCACAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR CCA 90 bp | TTGTGGTTTAGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATGACTGTACACTTCTGTaGAGTGTCACTGTCTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: LWFSRAFLSLATLLMSPNDCTLL*SVTVSL Trigger: GAGAGAGACAGTGACACTCCACAGAAGTGTACAGTC...ATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCTAAACCACAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR TCA 90 bp | TTGTGGTTTAGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATCTTTGGTCTGAATCCTaGGAACTGGACTGTACACTT | + |
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Preference number: 4 (lower is better) Translates to: LWFSRAFLSLATLLMSPNLWSES*ELDCTL Trigger: AAGTGTACAGTCCAGTTCTCAGGATTCAGACCAAAG...ATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCTAAACCACAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR GCA 90 bp | AGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATGATGCTGTTTCTCTCTCTTGGGGATaGTTCTTGAGAATTGACACA | + |
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Preference number: 4 (lower is better) Translates to: SRAFLSLATLLMSPNDAVSLSWG*FLRIDT Trigger: TGTGTCAATTCTCAAGAAGCATCCCCAAGAGAGAGA...AACAGCATCATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR CCA 90 bp | AGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATGATGCTGTTTCACTGTCTCTCTCTTaGGGATGCTTCTTGAGAATT | + |
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Preference number: 4 (lower is better) Translates to: SRAFLSLATLLMSPNDAVSLSLS*GCFLRI Trigger: AATTCTCAAGAAGCATCCCCAAGAGAGAGACAGTGA...AACAGCATCATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR CCA 90 bp | TTGTGGTTTAGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATCTGAATCCTGAGAACTaGACTGTACACTTCTGTGGA | + |
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Preference number: 4 (lower is better) Translates to: LWFSRAFLSLATLLMSPNLNPEN*TVHFCG Trigger: TCCACAGAAGTGTACAGTCCAGTTCTCAGGATTCAG...ATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCTAAACCACAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR TCA 90 bp | AGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATGATGCTGTTATGCTTCTTGAGAATTaGCACAGCCTCTTGCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: SRAFLSLATLLMSPNDAVMLLEN*HSLLLF Trigger: AAAAAGCAAGAGGCTGTGTCAATTCTCAAGAAGCAT...AACAGCATCATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS TCA 90 bp | ACCTTCTCCAGCCTGGCTCGCAGCAGAGTCCTCTCTGCAAGAAGCTaGTCTTTCCTGTGCTCCATCGTGCTGATCTCCTGGGCCAGTCGC | + |
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Preference number: 5 (lower is better) Translates to: TFSSLARSRVLSARS*SFLCSIVLISWASR Trigger: GCGACTGGCCCAGGAGATCAGCACGATGGAGCACAGGAAAGATCAGCTTCTTGCAGAGAGGACTCTGCTGCGAGCCAGGCTGGAGAAGGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034219.12 ENSMUST00000095173.3 ENSMUST00000212269.2 |
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| CDS GCA 90 bp | CCGCTGCTCCACCTTCTCCAGCCTGGCTCGCAGCAGAGTCCTCTCTaGAAGAAGCTGATCTTTCCTGTGCTCCATCGTGCTGATCTCCTG | + |
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Preference number: 5 (lower is better) Translates to: PLLHLLQPGSQQSPL*KKLIFPVLHRADLL Trigger: CAGGAGATCAGCACGATGGAGCACAGGAAAGATCAGCTTCTTGCAGAGAGGACTCTGCTGCGAGCCAGGCTGGAGAAGGTGGAGCAGCGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034219.12 ENSMUST00000095173.3 ENSMUST00000212269.2 |
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| CDS CCA 90 bp | GGACCTTGCTGCAGCTCATTAATGCGGTGGATCAGGTCCTCAATCTaGGGCTCCAGGCTTCCCTCTCGGGTGTCTTCAGCTTTCTCAGCT | + |
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Preference number: 5 (lower is better) Translates to: GPCCSSLMRWIRSSI*GSRLPSRVSSAFSA Trigger: AGCTGAGAAAGCTGAAGACACCCGAGAGGGAAGCCTGGAGCCCCAGATTGAGGACCTGATCCACCGCATTAATGAGCTGCAGCAAGGTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212269.2 |
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| CDS CCA 90 bp | CTGGATCTCTTCTTTGCTGGACCTTGCTGCAGCTCATTAATGCGGTaGATCAGGTCCTCAATCTGGGGCTCCAGGCTTCCCTCTCGGGTG | + |
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Preference number: 5 (lower is better) Translates to: LDLFFAGPCCSSLMR*IRSSIWGSRLPSRV Trigger: CACCCGAGAGGGAAGCCTGGAGCCCCAGATTGAGGACCTGATCCACCGCATTAATGAGCTGCAGCAAGGTCCAGCAAAGAAGAGATCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212269.2 |
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| CDS CCA 90 bp | ATGCTGTTCCTCTTGGCTAGCCTCCCCTTTATCATTCTGAGCTTCTaGGCTGCGCTGGGACTGCCCCTCCAATTCCTCCAGCTCTGTCTT | + |
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Preference number: 5 (lower is better) Translates to: MLFLLASLPFIILSF*AALGLPLQFLQLCL Trigger: AAGACAGAGCTGGAGGAATTGGAGGGGCAGTCCCAGCGCAGCCCAGAAGCTCAGAATGATAAAGGGGAGGCTAGCCAAGAGGAACAGCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000095173.3 ENSMUST00000212269.2 |
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| CDS CCA 90 bp | GGACCTTGCTGCAGCTCATTAATGCGGTGGATCAGGTCCTCAATCTaGGGCTCCAGGCTTCCCTCTTTCTGTAGCTTTTTCACTGTCTCC | + |
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Preference number: 5 (lower is better) Translates to: GPCCSSLMRWIRSSI*GSRLPSFCSFFTVS Trigger: GGAGACAGTGAAAAAGCTACAGAAAGAGGGAAGCCTGGAGCCCCAGATTGAGGACCTGATCCACCGCATTAATGAGCTGCAGCAAGGTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034219.12 ENSMUST00000095173.3 |
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| CDS CCA 90 bp | CTGGATCTCTTCTTTGCTGGACCTTGCTGCAGCTCATTAATGCGGTaGATCAGGTCCTCAATCTGGGGCTCCAGGCTTCCCTCTTTCTGT | + |
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Preference number: 5 (lower is better) Translates to: LDLFFAGPCCSSLMR*IRSSIWGSRLPSFC Trigger: ACAGAAAGAGGGAAGCCTGGAGCCCCAGATTGAGGACCTGATCCACCGCATTAATGAGCTGCAGCAAGGTCCAGCAAAGAAGAGATCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034219.12 ENSMUST00000095173.3 |
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| CDS-3UTR CAA 90 bp | TTGTGGTTTAGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATGGCTTCCTGGAGTGCTaGAGCCTCTCCCAGCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: LWFSRAFLSLATLLMSPNGFLEC*SLSQLL Trigger: GAGGAGCTGGGAGAGGCTCAAGCACTCCAGGAAGCC...ATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCTAAACCACAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR CAA 90 bp | AGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATGATGCTGTTCCAGAGGTCCTTGTGTaGCCTTGCCAGATCCGCCAG | + |
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Preference number: 5 (lower is better) Translates to: SRAFLSLATLLMSPNDAVPEVLV*PCQIRQ Trigger: CTGGCGGATCTGGCAAGGCAACACAAGGACCTCTGG...AACAGCATCATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS GCA 90 bp | TTGCCAGATCCGCCAGCCTCTCCTCCAGTTGTTGAGCATCCAAGCTaGAAACTTAGAAGCAACCCCAGCTTCTTTGGTCTGAATCCTGAG | + |
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Preference number: 5 (lower is better) Translates to: LPDPPASPPVVEHPS*KLRSNPSFFGLNPE Trigger: CTCAGGATTCAGACCAAAGAAGCTGGGGTTGCTTCTAAGTTTGCAGCTTGGATGCTCAACAACTGGAGGAGAGGCTGGCGGATCTGGCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR CAA 90 bp | AGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATGATGCTGTTACAGCCTCTTGCTTTTaGCGCAGGACCTCCTCTAGG | + |
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Preference number: 5 (lower is better) Translates to: SRAFLSLATLLMSPNDAVTASCF*RRTSSR Trigger: CCTAGAGGAGGTCCTGCGCAAAAAGCAAGAGGCTGT...AACAGCATCATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS TCA 90 bp | CATCCAAGTGTGGAGTGTCACTGTCTCTCTCTTGGGGATGCTTCTTaGGAATTGACACAGCCTCTTGCTTTTTGCGCAGGACCTCCTCTA | + |
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Preference number: 5 (lower is better) Translates to: HPSVECHCLSLGDAS*ELTQPLAFCAGPPL Trigger: TAGAGGAGGTCCTGCGCAAAAAGCAAGAGGCTGTGTCAATTCTCAAGAAGCATCCCCAAGAGAGAGACAGTGACACTCCACACTTGGATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000095173.3 ENSMUST00000212269.2 |
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| CDS GCA 90 bp | TGGACTGTACACTTCTGTGGAGTGTCACTGTCTCTCTCTTGGGGATaGTTCTTGAGAATTGACACAGCCTCTTGCTTTTTGCGCAGGACC | + |
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Preference number: 5 (lower is better) Translates to: WTVHFCGVSLSLSWG*FLRIDTASCFLRRT Trigger: GGTCCTGCGCAAAAAGCAAGAGGCTGTGTCAATTCTCAAGAAGCATCCCCAAGAGAGAGACAGTGACACTCCACAGAAGTGTACAGTCCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR CAA 90 bp | TTGTGGTTTAGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATAACTCCCAGAGGTCCTaGTGTTGCCTTGCCAGATCC | + |
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Preference number: 5 (lower is better) Translates to: LWFSRAFLSLATLLMSPNNSQRS*CCLARS Trigger: GGATCTGGCAAGGCAACACAAGGACCTCTGGGAGTT...ATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCTAAACCACAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS TCA 90 bp | TACACTTCTGTGGAGTGTCACTGTCTCTCTCTTGGGGATGCTTCTTaGGAATTGACACAGCCTCTTGCTTTTTGCGCAGGACCTCCTCTA | + |
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Preference number: 5 (lower is better) Translates to: YTSVECHCLSLGDAS*ELTQPLAFCAGPPL Trigger: TAGAGGAGGTCCTGCGCAAAAAGCAAGAGGCTGTGTCAATTCTCAAGAAGCATCCCCAAGAGAGAGACAGTGACACTCCACAGAAGTGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS GCA 90 bp | AGAATTGACACAGCCTCTTGCTTTTTGCGCAGGACCTCCTCTAGGTaGACTCTCTCTTCATTTAAGGAGTCTAGTTCCCTGTGCATGGCT | + |
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Preference number: 5 (lower is better) Translates to: RIDTASCFLRRTSSR*TLSSFKESSSLCMA Trigger: AGCCATGCACAGGGAACTAGACTCCTTAAATGAAGAGAGAGTGCACCTAGAGGAGGTCCTGCGCAAAAAGCAAGAGGCTGTGTCAATTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000034219.12 ENSMUST00000095173.3 ENSMUST00000212269.2 |
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| CDS-3UTR CAA 90 bp | TTGTGGTTTAGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATCACTGGATCTCTTCTTaGCTGGACCTTGCTGCAGCT | + |
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Preference number: 5 (lower is better) Translates to: LWFSRAFLSLATLLMSPNHWISS*LDLAAA Trigger: AGCTGCAGCAAGGTCCAGCAAAGAAGAGATCCAGTG...ATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCTAAACCACAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR CAA 90 bp | TTGTGGTTTAGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATCTTCTTTGCTGGACCTaGCTGCAGCTCATTAATGCG | + |
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Preference number: 5 (lower is better) Translates to: LWFSRAFLSLATLLMSPNLLCWT*LQLINA Trigger: CGCATTAATGAGCTGCAGCAAGGTCCAGCAAAGAAG...ATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCTAAACCACAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS-3UTR CAA 90 bp | AGCAGAGCGTTCCTGTCCTTGGCAACTCTTCTGATGTCTCCAAATGATGCTGTTTCTTGGGGATGCTTCTaGAGAATTGACACAGCCTCT | + |
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Preference number: 5 (lower is better) Translates to: SRAFLSLATLLMSPNDAVSWGCF*RIDTAS Trigger: AGAGGCTGTGTCAATTCTCAAGAAGCATCCCCAAGA...AACAGCATCATTTGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS GCA 72 bp | CTGTGCTCCATCGTGCTGATCTCCTGGGCCAGTCGCTaGTGCAGGACATGGAACTCCCAGAGGTCCTTGTGT | + |
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Preference number: 6 (lower is better) Translates to: LCSIVLISWASR*CRTWNSQRSLC Trigger: ACACAAGGACCTCTGGGAGTTCCATGTCCTGCAGCAGCGACTGGCCCAGGAGATCAGCACGATGGAGCACAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034219.12 ENSMUST00000095173.3 ENSMUST00000212269.2 |
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| CDS TCA 72 bp | AGCCTGGCTCGCAGCAGAGTCCTCTCTGCAAGAAGCTaGTCTTTCCTGTGCTCCATCGTGCTGATCTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: SLARSRVLSARS*SFLCSIVLISW Trigger: CCAGGAGATCAGCACGATGGAGCACAGGAAAGATCAGCTTCTTGCAGAGAGGACTCTGCTGCGAGCCAGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034219.12 ENSMUST00000095173.3 ENSMUST00000212269.2 |
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| CDS TCA 72 bp | TGCTGTTCCTCTTGGCTAGCCTCCCCTTTATCATTCTaGGCTTCTGGGCTGCGCTGGGACTGCCCCTCCAAT | + |
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Preference number: 6 (lower is better) Translates to: CCSSWLASPLSF*ASGLRWDCPSN Trigger: ATTGGAGGGGCAGTCCCAGCGCAGCCCAGAAGCTCAGAATGATAAAGGGGAGGCTAGCCAAGAGGAACAGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000095173.3 ENSMUST00000212269.2 |
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| CDS CAA 90 bp | GTCCTTGTGTTGCCTTGCCAGATCCGCCAGCCTCTCCTCCAGTTGTaGAGCATCCAAGTGTGGAGTGTCACTGTCTCTCTCTTGGGGATG | + |
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Preference number: 6 (lower is better) Translates to: VLVLPCQIRQPLLQL*SIQVWSVTVSLLGM Trigger: CATCCCCAAGAGAGAGACAGTGACACTCCACACTTGGATGCTCAACAACTGGAGGAGAGGCTGGCGGATCTGGCAAGGCAACACAAGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095173.3 ENSMUST00000212269.2 |
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| CDS CCA 72 bp | TTCTTTGCTGGACCTTGCTGCAGCTCATTAATGCGGTaGATCAGGTCCTCAATCTGGGGCTCCAGGCTTCCC | + |
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Preference number: 6 (lower is better) Translates to: FFAGPCCSSLMR*IRSSIWGSRLP Trigger: GGGAAGCCTGGAGCCCCAGATTGAGGACCTGATCCACCGCATTAATGAGCTGCAGCAAGGTCCAGCAAAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034219.12 ENSMUST00000095173.3 ENSMUST00000212269.2 |
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| CDS CAA 72 bp | TTGCCTTGCCAGATCCGCCAGCCTCTCCTCCAGTTGTaGAGCATCCAAGTGTGGAGTGTCACTGTCTCTCTC | + |
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Preference number: 6 (lower is better) Translates to: LPCQIRQPLLQL*SIQVWSVTVSL Trigger: GAGAGAGACAGTGACACTCCACACTTGGATGCTCAACAACTGGAGGAGAGGCTGGCGGATCTGGCAAGGCAA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095173.3 ENSMUST00000212269.2 |
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| CDS GCA 72 bp | CCCAGCTCCTCACTGGATCTCTTCTTTGCTGGACCTTaGTGCAGCTCATTAATGCGGTGGATCAGGTCCTCA | + |
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Preference number: 6 (lower is better) Translates to: PSSSLDLFFAGP*CSSLMRWIRSS Trigger: TGAGGACCTGATCCACCGCATTAATGAGCTGCAGCAAGGTCCAGCAAAGAAGAGATCCAGTGAGGAGCTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034219.12 ENSMUST00000095173.3 ENSMUST00000212269.2 |
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| CDS GCA 72 bp | CCGCCAGCCTCTCCTCCAGTTGTTGAGCATCCAAGCTaGAAACTTAGAAGCAACCCCAGCTTCTTTGGTCTG | + |
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Preference number: 6 (lower is better) Translates to: PPASPPVVEHPS*KLRSNPSFFGL Trigger: CAGACCAAAGAAGCTGGGGTTGCTTCTAAGTTTGCAGCTTGGATGCTCAACAACTGGAGGAGAGGCTGGCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS CCA 72 bp | AGCCTCTCCCAGCTCCTCACTGGATCTCTTCTTTGCTaGACCTTGCTGCAGCTCATTAATGCGGTGGATCAG | + |
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Preference number: 6 (lower is better) Translates to: SLSQLLTGSLLC*TLLQLINAVDQ Trigger: CTGATCCACCGCATTAATGAGCTGCAGCAAGGTCCAGCAAAGAAGAGATCCAGTGAGGAGCTGGGAGAGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034219.12 ENSMUST00000095173.3 ENSMUST00000212269.2 |
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| CDS CCA 72 bp | CGCCAGCCTCTCCTCCAGTTGTTGAGCATCCAAGTGTaGAGTGTCACTGTCTCTCTCTTGGGGATGCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: RQPLLQLLSIQV*SVTVSLLGMLL Trigger: AAGAAGCATCCCCAAGAGAGAGACAGTGACACTCCACACTTGGATGCTCAACAACTGGAGGAGAGGCTGGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095173.3 ENSMUST00000212269.2 |
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| CDS CAA 72 bp | TTGCCTTGCCAGATCCGCCAGCCTCTCCTCCAGTTGTaGAGCATCCAAGCTGCAAACTTAGAAGCAACCCCA | + |
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Preference number: 6 (lower is better) Translates to: LPCQIRQPLLQL*SIQAANLEATP Trigger: TGGGGTTGCTTCTAAGTTTGCAGCTTGGATGCTCAACAACTGGAGGAGAGGCTGGCGGATCTGGCAAGGCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS CAA 90 bp | GTCCTTGTGTTGCCTTGCCAGATCCGCCAGCCTCTCCTCCAGTTGTaGAGCATCCAAGCTGCAAACTTAGAAGCAACCCCAGCTTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: VLVLPCQIRQPLLQL*SIQAANLEATPASL Trigger: CAAAGAAGCTGGGGTTGCTTCTAAGTTTGCAGCTTGGATGCTCAACAACTGGAGGAGAGGCTGGCGGATCTGGCAAGGCAACACAAGGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS CAA 90 bp | GCATCCAAGTGTGGAGTGTCACTGTCTCTCTCTTGGGGATGCTTCTaGAGAATTGACACAGCCTCTTGCTTTTTGCGCAGGACCTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: ASKCGVSLSLSWGCF*RIDTASCFLRRTSS Trigger: AGAGGAGGTCCTGCGCAAAAAGCAAGAGGCTGTGTCAATTCTCAAGAAGCATCCCCAAGAGAGAGACAGTGACACTCCACACTTGGATGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000095173.3 ENSMUST00000212269.2 |
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| CDS TCA 72 bp | GTCACTGTCTCTCTCTTGGGGATGCTTCTTGAGAATTaGCACAGCCTCTTGCTTTTTGCGCAGGACCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: VTVSLLGMLLEN*HSLLLFAQDLL Trigger: GAGGAGGTCCTGCGCAAAAAGCAAGAGGCTGTGTCAATTCTCAAGAAGCATCCCCAAGAGAGAGACAGTGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034219.12 ENSMUST00000095173.3 ENSMUST00000212269.2 |
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| CDS GCA 72 bp | TCTTGGGGATGCTTCTTGAGAATTGACACAGCCTCTTaGTTTTTGCGCAGGACCTCCTCTAGGTGCACTCTC | + |
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Preference number: 6 (lower is better) Translates to: SWGCFLRIDTAS*FLRRTSSRCTL Trigger: GAGAGTGCACCTAGAGGAGGTCCTGCGCAAAAAGCAAGAGGCTGTGTCAATTCTCAAGAAGCATCCCCAAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034219.12 ENSMUST00000095173.3 ENSMUST00000212269.2 |
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| CDS CAA 90 bp | GTACACTTCTGTGGAGTGTCACTGTCTCTCTCTTGGGGATGCTTCTaGAGAATTGACACAGCCTCTTGCTTTTTGCGCAGGACCTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: VHFCGVSLSLSWGCF*RIDTASCFLRRTSS Trigger: AGAGGAGGTCCTGCGCAAAAAGCAAGAGGCTGTGTCAATTCTCAAGAAGCATCCCCAAGAGAGAGACAGTGACACTCCACAGAAGTGTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS GCA 72 bp | ACAGCCTCTTGCTTTTTGCGCAGGACCTCCTCTAGGTaGACTCTCTCTTCATTTAAGGAGTCTAGTTCCCTG | + |
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Preference number: 6 (lower is better) Translates to: TASCFLRRTSSR*TLSSFKESSSL Trigger: CAGGGAACTAGACTCCTTAAATGAAGAGAGAGTGCACCTAGAGGAGGTCCTGCGCAAAAAGCAAGAGGCTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000034219.12 ENSMUST00000095173.3 ENSMUST00000212269.2 |
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| CDS TCA 72 bp | GCTGCAAACTTAGAAGCAACCCCAGCTTCTTTGGTCTaGATCCTGAGAACTGGACTGTACACTTCTGTGGAG | + |
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Preference number: 6 (lower is better) Translates to: AANLEATPASLV*ILRTGLYTSVE Trigger: CTCCACAGAAGTGTACAGTCCAGTTCTCAGGATTCAGACCAAAGAAGCTGGGGTTGCTTCTAAGTTTGCAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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| CDS CCA 72 bp | ACTGTACACTTCTGTGGAGTGTCACTGTCTCTCTCTTaGGGATGCTTCTTGAGAATTGACACAGCCTCTTGC | + |
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Preference number: 6 (lower is better) Translates to: TVHFCGVSLSLS*GCFLRIDTASC Trigger: GCAAGAGGCTGTGTCAATTCTCAAGAAGCATCCCCAAGAGAGAGACAGTGACACTCCACAGAAGTGTACAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034219.12 |
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