Pregenerated sensors for SYCE1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025480Ensembl transcript IDs: ENSMUST00000026553.6, ENSMUST00000211616.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGCTGGTGATGTGTCTTCCTTTTGTTTCAAAGTATATGCTATTCTaGGCCTACATGAGGGAACTAAATTACCAAGTGGCTTCAGATCCT | + |
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Preference number: 1 (lower is better) Translates to: ELVMCLPFVSKYMLF*AYMRELNYQVASDP Trigger: AGGATCTGAAGCCACTTGGTAATTTAGTTCCCTCATGTAGGCCCAGAATAGCATATACTTTGAAACAAAAGGAAGACACATCACCAGCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| 3UTR-3UTR TCA 90 bp | GACATCTCCAGGTTCAAAGACTTGAGGGGCTTGGCCCCAACACCCATTCTTCCACGGCACATACTCAGATaGAGCAGGCTACACAAAACA | + |
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Preference number: 2 (lower is better) Translates to: DISRFKDLRGLAPTPILPRHILR*SRLHKT Trigger: TGTTTTGTGTAGCCTGCTTCATCTGAGTATGTGCCG...TGGAAGAATGGGTGTTGGGGCCAAGCCCCTCAAGTCTTTGAACCTGGAGATGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| 3UTR-3UTR TCA 90 bp | AGAGCTGGTGATGTGTCTTCCTTTTGTTTCAAAGTATATGCTATTCTGGGCCTAGGTGAAACTCAAAATTaGGCCAAGACATCTCCAGGT | + |
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Preference number: 2 (lower is better) Translates to: RAGDVSSFCFKVYAILGLGETQN*AKTSPG Trigger: ACCTGGAGATGTCTTGGCTCAATTTTGAGTTTCACC...TAGGCCCAGAATAGCATATACTTTGAAACAAAAGGAAGACACATCACCAGCTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| 3UTR-3UTR TCA 90 bp | AGAGCTGGTGATGTGTCTTCCTTTTGTTTCAAAGTATATGCTATTCTGGGCCTACAAAACATCCGCAAGTaGTGTCTGAAGTCAGTAAGT | + |
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Preference number: 2 (lower is better) Translates to: RAGDVSSFCFKVYAILGLQNIRK*CLKSVS Trigger: ACTTACTGACTTCAGACATCACTTGCGGATGTTTTG...TAGGCCCAGAATAGCATATACTTTGAAACAAAAGGAAGACACATCACCAGCTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| 3UTR-3UTR GCA 90 bp | ATGTGTCTTCCTTTTGTTTCAAAGTATATGCTATTCTGGGCCTACATGAGGGAACATTTACTAAGGGTCTaGAGTGTGGACCCTAAGCTA | + |
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Preference number: 2 (lower is better) Translates to: MCLPFVSKYMLFWAYMREHLLRV*SVDPKL Trigger: TAGCTTAGGGTCCACACTGCAGACCCTTAGTAAATG...TTCCCTCATGTAGGCCCAGAATAGCATATACTTTGAAACAAAAGGAAGACACAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| 3UTR TCA 72 bp | CCCAACACCCATTCTTCCACTCGGCACATACTCAGATaGAGCAGGCTACACAAAACATCCGCAAGTGATGTC | + |
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Preference number: 3 (lower is better) Translates to: PNTHSSTRHILR*SRLHKTSASDV Trigger: GACATCACTTGCGGATGTTTTGTGTAGCCTGCTTCATCTGAGTATGTGCCGAGTGGAAGAATGGGTGTTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| 3UTR GCA 72 bp | GTGAGCAAGAGACAGGGAAAGCATTTACTAAGGGTCTaGAGTGTGGACCCTAAGCTAGGTGAAACTCAAAAT | + |
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Preference number: 3 (lower is better) Translates to: VSKRQGKHLLRV*SVDPKLGETQN Trigger: ATTTTGAGTTTCACCTAGCTTAGGGTCCACACTGCAGACCCTTAGTAAATGCTTTCCCTGTCTCTTGCTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| 3UTR CCA 72 bp | ATGTGTCTTCCTTTTGTTTCAAAGTATATGCTATTCTaGGCCTACATGAGGGAACTAAATTACCAAGTGGCT | + |
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Preference number: 3 (lower is better) Translates to: MCLPFVSKYMLF*AYMRELNYQVA Trigger: AGCCACTTGGTAATTTAGTTCCCTCATGTAGGCCCAGAATAGCATATACTTTGAAACAAAAGGAAGACACAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| 3UTR TCA 72 bp | AGAATGAGGTGGTTTATAGTGAGAATTAAGAGCTGGTaGTGTGTCTTCCTTTTGTTTCAAAGTATATGCTAT | + |
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Preference number: 3 (lower is better) Translates to: RMRWFIVRIKSW*CVFLLFQSICY Trigger: ATAGCATATACTTTGAAACAAAAGGAAGACACATCACCAGCTCTTAATTCTCACTATAAACCACCTCATTCT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR TCA 90 bp | AAATTGAGCCAAGACATCTCCAGGTTCAAAGACTTGAGGGGCTTGGCCCCAACAAGCTGCTCGTGCTGCTaGGCTGCAGCCTCTAGGAAC | + |
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Preference number: 4 (lower is better) Translates to: KLSQDISRFKDLRGLAPTSCSCC*AAASRN Trigger: GTTCCTAGAGGCTGCAGCTCAGCAGCACGAGCAGCT...TGTTGGGGCCAAGCCCCTCAAGTCTTTGAACCTGGAGATGTCTTGGCTCAATTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR GCA 90 bp | AGATCCTGTGAGAAGGTTCAGATCAGCATCCTCTGCTCAAGAGAAGAAGCGTGTTGTGTGGACCCATACTaGCCTCTGGCCCCCTCAGGC | + |
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Preference number: 4 (lower is better) Translates to: RSCEKVQISILCSREEACCVDPY*PLAPSG Trigger: GCCTGAGGGGGCCAGAGGGCAGTATGGGTCCACACA...ACACGCTTCTTCTCTTGAGCAGAGGATGCTGATCTGAACCTTCTCACAGGATCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| 3UTR CAA 72 bp | AGCCAAGACATCTCCAGGTTCAAAGACTTGAGGGGCTaGGCCCCAACACCCATTCTTCCACTCGGCACATAC | + |
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Preference number: 4 (lower is better) Translates to: SQDISRFKDLRG*APTPILPLGTY Trigger: GTATGTGCCGAGTGGAAGAATGGGTGTTGGGGCCAAGCCCCTCAAGTCTTTGAACCTGGAGATGTCTTGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR CCA 90 bp | AACTCAAAATTGAGCCAAGACATCTCCAGGTTCAAAGACTTGAGGGGCTTGGCCGCTGCAGCTGCCTCATaGCTTCGGAGGAAGAGTCCC | + |
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Preference number: 4 (lower is better) Translates to: NSKLSQDISRFKDLRGLAAAAAS*LRRKSP Trigger: GGGACTCTTCCTCCGAAGCCATGAGGCAGCTGCAGC...GGCCAAGCCCCTCAAGTCTTTGAACCTGGAGATGTCTTGGCTCAATTTTGAGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR CCA 90 bp | AGAGCTGGTGATGTGTCTTCCTTTTGTTTCAAAGTATATGCTATTCTGGGCCTAACCCATACTGCCCTCTaGCCCCCTCAGGCCCGTGGA | + |
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Preference number: 4 (lower is better) Translates to: RAGDVSSFCFKVYAILGLTHTAL*PPQARG Trigger: TCCACGGGCCTGAGGGGGCCAGAGGGCAGTATGGGT...TAGGCCCAGAATAGCATATACTTTGAAACAAAAGGAAGACACATCACCAGCTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR CCA 90 bp | AGCGTGTGTCAGATACTAGTGGTGAGCAAGAGACAGGGAAAGCATTTACTAAGGCTTGATGGGCGCTCTTaGTCTTGGGCTGTCTCCTCG | + |
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Preference number: 4 (lower is better) Translates to: SVCQILVVSKRQGKHLLRLDGRS*SWAVSS Trigger: CGAGGAGACAGCCCAAGACCAAGAGCGCCCATCAAG...CCTTAGTAAATGCTTTCCCTGTCTCTTGCTCACCACTAGTATCTGACACACGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR GCA 90 bp | AGATCCTGTGAGAAGGTTCAGATCAGCATCCTCTGCTCAAGAGAAGAAGCGTGTTACACTCCTGCAACATaGTGTGCTTCCTCTGTGCCT | + |
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Preference number: 4 (lower is better) Translates to: RSCEKVQISILCSREEACYTPAT*CASSVP Trigger: AGGCACAGAGGAAGCACAGCATGTTGCAGGAGTGTA...ACACGCTTCTTCTCTTGAGCAGAGGATGCTGATCTGAACCTTCTCACAGGATCT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR GCA 90 bp | AACTCAAAATTGAGCCAAGACATCTCCAGGTTCAAAGACTTGAGGGGCTTGGCCGCAGCTGCTCCTTGCTaGTGTCCAAAACACACATCT | + |
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Preference number: 4 (lower is better) Translates to: NSKLSQDISRFKDLRGLAAAAPC*CPKHTS Trigger: AGATGTGTGTTTTGGACAGCAGCAAGGAGCAGCTGC...GGCCAAGCCCCTCAAGTCTTTGAACCTGGAGATGTCTTGGCTCAATTTTGAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR GCA 90 bp | AACTCAAAATTGAGCCAAGACATCTCCAGGTTCAAAGACTTGAGGGGCTTGGCCCTCTCTTTACACTCCTaGAACATGCTGTGCTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: NSKLSQDISRFKDLRGLALSLHS*NMLCFL Trigger: GAGGAAGCACAGCATGTTGCAGGAGTGTAAAGAGAG...GGCCAAGCCCCTCAAGTCTTTGAACCTGGAGATGTCTTGGCTCAATTTTGAGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR CCA 90 bp | GGCTTCAGATCCTGTGAGAAGGTTCAGATCAGCATCCTCTGCTCAAGAGAAGAACTTCAATTTTCTGTGTaGACCCATACTGCCCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: GFRSCEKVQISILCSREELQFSV*THTALW Trigger: CCAGAGGGCAGTATGGGTCCACACAGAAAATTGAAG...TTCTTCTCTTGAGCAGAGGATGCTGATCTGAACCTTCTCACAGGATCTGAAGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR CCA 90 bp | ACTAGTGGTGAGCAAGAGACAGGGAAAGCATTTACTAAGGGTCTGCAGTGTGGATCACTTTCCTTCTCCTaGCAGTGCAGCTGCATAATC | + |
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Preference number: 4 (lower is better) Translates to: TSGEQETGKAFTKGLQCGSLSFS*QCSCII Trigger: GATTATGCAGCTGCACTGCCAGGAGAAGGAAAGTGA...TCCACACTGCAGACCCTTAGTAAATGCTTTCCCTGTCTCTTGCTCACCACTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR TCA 90 bp | AGAGCTGGTGATGTGTCTTCCTTTTGTTTCAAAGTATATGCTATTCTGGGCCTATCAGTTTCTCTTCCTTaGGCAGCTGCTCCTTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: RAGDVSSFCFKVYAILGLSVSLP*AAAPCC Trigger: GCAGCAAGGAGCAGCTGCTCAAGGAAGAGAAACTGA...TAGGCCCAGAATAGCATATACTTTGAAACAAAAGGAAGACACATCACCAGCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR GCA 90 bp | AGCGTGTGTCAGATACTAGTGGTGAGCAAGAGACAGGGAAAGCATTTACTAAGGAGGCTTCCCACTTTCTaGAACTTTTTCACCATGTCC | + |
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Preference number: 4 (lower is better) Translates to: SVCQILVVSKRQGKHLLRRLPTF*NFFTMS Trigger: GGACATGGTGAAAAAGTTGCAGAAAGTGGGAAGCCT...CCTTAGTAAATGCTTTCCCTGTCTCTTGCTCACCACTAGTATCTGACACACGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR GCA 90 bp | CTGGTGATGTGTCTTCCTTTTGTTTCAAAGTATATGCTATTCTGGGCCTACATGGAACATCTGCATTGCTaGAGCTGCCTCATGGCTTCG | + |
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Preference number: 4 (lower is better) Translates to: LVMCLPFVSKYMLFWAYMEHLHC*SCLMAS Trigger: CGAAGCCATGAGGCAGCTGCAGCAATGCAGATGTTC...CATGTAGGCCCAGAATAGCATATACTTTGAAACAAAAGGAAGACACATCACCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR CCA 90 bp | CTTCCTTTTGTTTCAAAGTATATGCTATTCTGGGCCTACATGAGGGAACTAAATCGTTTCTGCTGTAGCTaGTGGCACCTCTGCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: LPFVSKYMLFWAYMRELNRFCCS*WHLCCS Trigger: GCTGCAGCAGAGGTGCCACCAGCTACAGCAGAAACG...ATTTAGTTCCCTCATGTAGGCCCAGAATAGCATATACTTTGAAACAAAAGGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR GCA 90 bp | AGAGCTGGTGATGTGTCTTCCTTTTGTTTCAAAGTATATGCTATTCTGGGCCTATCTTCCTTGAGCAGCTaGTCCTTGCTGCTGTCCAAA | + |
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Preference number: 4 (lower is better) Translates to: RAGDVSSFCFKVYAILGLSSLSS*SLLLSK Trigger: TTTGGACAGCAGCAAGGAGCAGCTGCTCAAGGAAGA...TAGGCCCAGAATAGCATATACTTTGAAACAAAAGGAAGACACATCACCAGCTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR GCA 90 bp | AGAAGCGTGTGTCAGATACTAGTGGTGAGCAAGAGACAGGGAAAGCATTTACTAAGGATCTGTACCCCATaGTTTTCCAGTTCTTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: RSVCQILVVSKRQGKHLLRICTP*FSSSSF Trigger: GAAGGAAGAACTGGAAAAGCATGGGGTACAGATCCT...TAGTAAATGCTTTCCCTGTCTCTTGCTCACCACTAGTATCTGACACACGCTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR TCA 90 bp | TCAGATGAAGCAGGCTACACAAAACATCCGCAAGTGATGTCTGAAGTCAGTAAGAAGGTGTCCTTATGTTaGCTCATCAAAGTCTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: SDEAGYTKHPQVMSEVSKKVSLC*LIKVSR Trigger: TCTGGAGACTTTGATGAGTCAACATAAGGACACCTT...CTTACTGACTTCAGACATCACTTGCGGATGTTTTGTGTAGCCTGCTTCATCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR GCA 90 bp | ATGTGTCTTCCTTTTGTTTCAAAGTATATGCTATTCTGGGCCTACATGAGGGAACTTGAACATCTGCATTaGTGCAGCTGCCTCATGGCT | + |
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Preference number: 4 (lower is better) Translates to: MCLPFVSKYMLFWAYMRELEHLH*CSCLMA Trigger: AGCCATGAGGCAGCTGCAGCAATGCAGATGTTCAAG...TTCCCTCATGTAGGCCCAGAATAGCATATACTTTGAAACAAAAGGAAGACACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR TCA 90 bp | AGAAGCGTGTGTCAGATACTAGTGGTGAGCAAGAGACAGGGAAAGCATTTACTAAGATGTTCAGGCTTATaGAATTCCAAGGTGTCCTTA | + |
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Preference number: 4 (lower is better) Translates to: RSVCQILVVSKRQGKHLLRCSGL*NSKVSL Trigger: TAAGGACACCTTGGAATTTCATAAGCCTGAACATCT...TAGTAAATGCTTTCCCTGTCTCTTGCTCACCACTAGTATCTGACACACGCTTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR CCA 90 bp | ATGTGTCTTCCTTTTGTTTCAAAGTATATGCTATTCTGGGCCTACATGAGGGAATTCTCTTTGTCGATCTaGGAGTTCAGGAAAGAAATT | + |
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Preference number: 4 (lower is better) Translates to: MCLPFVSKYMLFWAYMREFSLSI*EFRKEI Trigger: AATTTCTTTCCTGAACTCCCAGATCGACAAAGAGAA...TTCCCTCATGTAGGCCCAGAATAGCATATACTTTGAAACAAAAGGAAGACACAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS CCA 90 bp | TCAATCCGGGGCTCTAGGCTTCCCACTCTGGCCCCCTCAGGCCCGTaGAGCAGGTCTGCTGAGCCCTCGGGCTCCATACCCAACGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: SIRGSRLPTLAPSGP*SRSAEPSGSIPNGC Trigger: GCAGCCGTTGGGTATGGAGCCCGAGGGCTCAGCAGACCTGCTCCACGGGCCTGAGGGGGCCAGAGTGGGAAGCCTAGAGCCCCGGATTGA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211616.2 |
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| CDS TCA 90 bp | GCATTGCTGCAGCTGCCTCATGGCTTCGGAGGAAGAGTCCCTCAATaGGGCTGGAAGAACCCTCAGGCCCGCCCAGGGCACACAGCCGCT | + |
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Preference number: 5 (lower is better) Translates to: ALLQLPHGFGGRVPQ*GWKNPQARPGHTAA Trigger: AGCGGCTGTGTGCCCTGGGCGGGCCTGAGGGTTCTTCCAGCCTCATTGAGGGACTCTTCCTCCGAAGCCATGAGGCAGCTGCAGCAATGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR CAA 90 bp | AAATTGAGCCAAGACATCTCCAGGTTCAAAGACTTGAGGGGCTTGGCCCCAACAAGTTCCTTCTGCAGGTaGTCCCAGACAGTCTGGGCC | + |
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Preference number: 5 (lower is better) Translates to: KLSQDISRFKDLRGLAPTSSFCR*SQTVWA Trigger: GGCCCAGACTGTCTGGGACAACCTGCAGAAGGAACT...TGTTGGGGCCAAGCCCCTCAAGTCTTTGAACCTGGAGATGTCTTGGCTCAATTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS GCA 90 bp | TCCTTCAGACGTACTTTCTCTTCACGTAGTAAGTCCAGTTCCTTCTaGAGGTTGTCCCAGACAGTCTGGGCCTCTCCAAGCTCCTCACTG | + |
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Preference number: 5 (lower is better) Translates to: SFRRTFSSRSKSSSF*RLSQTVWASPSSSL Trigger: CAGTGAGGAGCTTGGAGAGGCCCAGACTGTCTGGGACAACCTGCAGAAGGAACTGGACTTACTACGTGAAGAGAAAGTACGTCTGAAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026553.6 ENSMUST00000211616.2 |
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| CDS GCA 90 bp | GCCTCTAGGAACTCCTCAGCTTTCTTGTTCTCATCCTTGAACATCTaGATTGCTGCAGCTGCCTCATGGCTTCGGAGGAAGAGTCCCTCA | + |
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Preference number: 5 (lower is better) Translates to: ASRNSSAFLFSSLNI*IAAAASWLRRKSPS Trigger: TGAGGGACTCTTCCTCCGAAGCCATGAGGCAGCTGCAGCAATGCAGATGTTCAAGGATGAGAACAAGAAAGCTGAGGAGTTCCTAGAGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS GCA 90 bp | GAACTCCTCAGCTTTCTTGTTCTCATCCTTGAACATCTGCATTGCTaGAGCTGCCTCATGGCTTCGGAGGAAGAGTCCCTCAATGAGGCT | + |
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Preference number: 5 (lower is better) Translates to: ELLSFLVLILEHLHC*SCLMASEEESLNEA Trigger: AGCCTCATTGAGGGACTCTTCCTCCGAAGCCATGAGGCAGCTGCAGCAATGCAGATGTTCAAGGATGAGAACAAGAAAGCTGAGGAGTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS CCA 90 bp | TTCTTGTTCTCATCCTTGAACATCTGCATTGCTGCAGCTGCCTCATaGCTTCGGAGGAAGAGTCCCTCAATGAGGCTGGAAGAACCCTCA | + |
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Preference number: 5 (lower is better) Translates to: FLFSSLNICIAAAAS*LRRKSPSMRLEEPS Trigger: TGAGGGTTCTTCCAGCCTCATTGAGGGACTCTTCCTCCGAAGCCATGAGGCAGCTGCAGCAATGCAGATGTTCAAGGATGAGAACAAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR CAA 90 bp | GACATCTCCAGGTTCAAAGACTTGAGGGGCTTGGCCCCAACACCCATTCTTCCATTCTTGTTCTCATCCTaGAACATCTGCATTGCTGCA | + |
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Preference number: 5 (lower is better) Translates to: DISRFKDLRGLAPTPILPFLFSS*NICIAA Trigger: TGCAGCAATGCAGATGTTCAAGGATGAGAACAAGAA...TGGAAGAATGGGTGTTGGGGCCAAGCCCCTCAAGTCTTTGAACCTGGAGATGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR CAA 90 bp | AGACATCTCCAGGTTCAAAGACTTGAGGGGCTTGGCCCCAACACCCATTCTTCCAACTCCTCAGCTTTCTaGTTCTCATCCTTGAACATC | + |
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Preference number: 5 (lower is better) Translates to: RHLQVQRLEGLGPNTHSSNSSAF*FSSLNI Trigger: GATGTTCAAGGATGAGAACAAGAAAGCTGAGGAGTT...GGAAGAATGGGTGTTGGGGCCAAGCCCCTCAAGTCTTTGAACCTGGAGATGTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS TCA 90 bp | GCTGTCTCACATCCTCCAGCTTTACTTTCATCAGTTTCTCTTCCTTaGGCAGCTGCTCCTTGCTGCTGTCCAAAACACACATCTCCTTTG | + |
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Preference number: 5 (lower is better) Translates to: AVSHPPALLSSVSLP*AAAPCCCPKHTSPL Trigger: CAAAGGAGATGTGTGTTTTGGACAGCAGCAAGGAGCAGCTGCTCAAGGAAGAGAAACTGATGAAAGTAAAGCTGGAGGATGTGAGACAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR CAA 90 bp | AGCGTGTGTCAGATACTAGTGGTGAGCAAGAGACAGGGAAAGCATTTACTAAGGCAAGGTGTCCTTATGTaGACTCATCAAAGTCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: SVCQILVVSKRQGKHLLRQGVLM*THQSLQ Trigger: CTGGAGACTTTGATGAGTCAACATAAGGACACCTTG...CCTTAGTAAATGCTTTCCCTGTCTCTTGCTCACCACTAGTATCTGACACACGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS-3UTR CAA 90 bp | CTTCCTTTTGTTTCAAAGTATATGCTATTCTGGGCCTACATGAGGGAACTAAATTTGAGCAGCTGCTCCTaGCTGCTGTCCAAAACACAC | + |
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Preference number: 5 (lower is better) Translates to: LPFVSKYMLFWAYMRELNLSSCS*LLSKTH Trigger: GTGTGTTTTGGACAGCAGCAAGGAGCAGCTGCTCAA...ATTTAGTTCCCTCATGTAGGCCCAGAATAGCATATACTTTGAAACAAAAGGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS CCA 90 bp | AAGTCTCCAGATGTTCTTCAAAATCCAACCTCAGTTTTCTTAGTTTaGCCTTCTCTTTGTCGATCTGGGAGTTCAGGAAAGAAATTCTCT | + |
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Preference number: 5 (lower is better) Translates to: KSPDVLQNPTSVFLV*PSLCRSGSSGKKFS Trigger: AGAGAATTTCTTTCCTGAACTCCCAGATCGACAAAGAGAAGGCCAAACTAAGAAAACTGAGGTTGGATTTTGAAGAACATCTGGAGACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS CCA 72 bp | GTGGACCCATACTGCCCTCTGGCCCCCTCAGGCCCGTaGAGCAGGTCTGCTGAGCCCTCGGGCTCCATACCC | + |
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Preference number: 6 (lower is better) Translates to: VDPYCPLAPSGP*SRSAEPSGSIP Trigger: GGGTATGGAGCCCGAGGGCTCAGCAGACCTGCTCCACGGGCCTGAGGGGGCCAGAGGGCAGTATGGGTCCAC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS CCA 72 bp | GGCTCTAGGCTTCCCACTCTGGCCCCCTCAGGCCCGTaGAGCAGGTCTGCTGAGCCCTCGGGCTCCATACCC | + |
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Preference number: 6 (lower is better) Translates to: GSRLPTLAPSGP*SRSAEPSGSIP Trigger: GGGTATGGAGCCCGAGGGCTCAGCAGACCTGCTCCACGGGCCTGAGGGGGCCAGAGTGGGAAGCCTAGAGCC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211616.2 |
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| CDS TCA 72 bp | CAGCTGCCTCATGGCTTCGGAGGAAGAGTCCCTCAATaGGGCTGGAAGAACCCTCAGGCCCGCCCAGGGCAC | + |
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Preference number: 6 (lower is better) Translates to: QLPHGFGGRVPQ*GWKNPQARPGH Trigger: GTGCCCTGGGCGGGCCTGAGGGTTCTTCCAGCCTCATTGAGGGACTCTTCCTCCGAAGCCATGAGGCAGCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS TCA 72 bp | AGCTGGTGGCACCTCTGCTGCAGCTGCTCGTGCTGCTaGGCTGCAGCCTCTAGGAACTCCTCAGCTTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: SWWHLCCSCSCC*AAASRNSSAFL Trigger: CAAGAAAGCTGAGGAGTTCCTAGAGGCTGCAGCTCAGCAGCACGAGCAGCTGCAGCAGAGGTGCCACCAGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS GCA 72 bp | CGTACTTTCTCTTCACGTAGTAAGTCCAGTTCCTTCTaGAGGTTGTCCCAGACAGTCTGGGCCTCTCCAAGC | + |
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Preference number: 6 (lower is better) Translates to: RTFSSRSKSSSF*RLSQTVWASPS Trigger: GCTTGGAGAGGCCCAGACTGTCTGGGACAACCTGCAGAAGGAACTGGACTTACTACGTGAAGAGAAAGTACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026553.6 ENSMUST00000211616.2 |
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| CDS CCA 72 bp | TCATCCTTGAACATCTGCATTGCTGCAGCTGCCTCATaGCTTCGGAGGAAGAGTCCCTCAATGAGGCTGGAA | + |
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Preference number: 6 (lower is better) Translates to: SSLNICIAAAAS*LRRKSPSMRLE Trigger: TTCCAGCCTCATTGAGGGACTCTTCCTCCGAAGCCATGAGGCAGCTGCAGCAATGCAGATGTTCAAGGATGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS GCA 72 bp | CTCAGCTTTCTTGTTCTCATCCTTGAACATCTGCATTaGTGCAGCTGCCTCATGGCTTCGGAGGAAGAGTCC | + |
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Preference number: 6 (lower is better) Translates to: LSFLVLILEHLH*CSCLMASEEES Trigger: GGACTCTTCCTCCGAAGCCATGAGGCAGCTGCAGCAATGCAGATGTTCAAGGATGAGAACAAGAAAGCTGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS TCA 72 bp | CCTCTAGGAACTCCTCAGCTTTCTTGTTCTCATCCTTaGACATCTGCATTGCTGCAGCTGCCTCATGGCTTC | + |
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Preference number: 6 (lower is better) Translates to: PLGTPQLSCSHP*TSALLQLPHGF Trigger: GAAGCCATGAGGCAGCTGCAGCAATGCAGATGTTCAAGGATGAGAACAAGAAAGCTGAGGAGTTCCTAGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS CAA 72 bp | GCTGCTCCTTGCTGCTGTCCAAAACACACATCTCCTTaGTCAGATGTTCAGGCTTATGAAATTCCAAGGTGT | + |
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Preference number: 6 (lower is better) Translates to: AAPCCCPKHTSP*SDVQAYEIPRC Trigger: ACACCTTGGAATTTCATAAGCCTGAACATCTGACAAAGGAGATGTGTGTTTTGGACAGCAGCAAGGAGCAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS CAA 90 bp | TGTTCTTCAAAATCCAACCTCAGTTTTCTTAGTTTGGCCTTCTCTTaGTCGATCTGGGAGTTCAGGAAAGAAATTCTCTCTTTACACTCC | + |
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Preference number: 6 (lower is better) Translates to: CSSKSNLSFLSLAFS*SIWEFRKEILSLHS Trigger: GGAGTGTAAAGAGAGAATTTCTTTCCTGAACTCCCAGATCGACAAAGAGAAGGCCAAACTAAGAAAACTGAGGTTGGATTTTGAAGAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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| CDS CAA 90 bp | CTTTGTCAGATGTTCAGGCTTATGAAATTCCAAGGTGTCCTTATGTaGACTCATCAAAGTCTCCAGATGTTCTTCAAAATCCAACCTCAG | + |
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Preference number: 6 (lower is better) Translates to: LCQMFRLMKFQGVLM*THQSLQMFFKIQPQ Trigger: CTGAGGTTGGATTTTGAAGAACATCTGGAGACTTTGATGAGTCAACATAAGGACACCTTGGAATTTCATAAGCCTGAACATCTGACAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026553.6 |
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