RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SYBU (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022340

Ensembl transcript IDs: ENSMUST00000090057.6, ENSMUST00000110267.9, ENSMUST00000110269.8, ENSMUST00000226214.2, ENSMUST00000227305.2, ENSMUST00000228057.2, ENSMUST00000228639.2

Found 531 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ACGTCGGTCTGCACGGCTTGCTCCATCACCGCAATGCCCTCTTCGTaGCTCACCAAGGGGAGAGCCTTGAGGGCTTGTGGCCCTGGAGTG +
Preference number: 1 (lower is better)
Translates to: TSVCTACSITAMPSS*LTKGRALRACGPGV
Trigger: CACTCCAGGGCCACAAGCCCTCAAGGCTCTCCCCTTGGTGAGCCACGAAGAGGGCATTGCGGTGATGGAGCAAGCCGTGCAGACCGACGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR GCA 90 bp TCTGAGATGGCAGGGCTGAACGGCACCACGTCGGTCTGCACGGCTTaGTCCATCACCGCAATGCCCTCTTCGTGGCTCACCAAGGGGAGA +
Preference number: 1 (lower is better)
Translates to: SEMAGLNGTTSVCTA*SITAMPSSWLTKGR
Trigger: TCTCCCCTTGGTGAGCCACGAAGAGGGCATTGCGGTGATGGAGCAAGCCGTGCAGACCGACGTGGTGCCGTTCAGCCCTGCCATCTCAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR TCA 90 bp CCATCACCGCAATGCCCTCTTCGTGGCTCACCAAGGGGAGAGCCTTaGGGGCTTGTGGCCCTGGAGTGGAATGAACAAACTCCAGGCCAC +
Preference number: 1 (lower is better)
Translates to: PSPQCPLRGSPRGEP*GLVALEWNEQTPGH
Trigger: GTGGCCTGGAGTTTGTTCATTCCACTCCAGGGCCACAAGCCCTCAAGGCTCTCCCCTTGGTGAGCCACGAAGAGGGCATTGCGGTGATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR GCA 90 bp TTGGGGATGGTGGGCTGCTGCCAGACTTGTGGGATGATGCTCCATTaGTCCGCCCATGAGGGCCTCGGTTGCGTGAGAAAGAGGCTCTCT +
Preference number: 1 (lower is better)
Translates to: LGMVGCCQTCGMMLH*SAHEGLGCVRKRLS
Trigger: AGAGAGCCTCTTTCTCACGCAACCGAGGCCCTCATGGGCGGAGCAATGGAGCATCATCCCACAAGTCTGGCAGCAGCCCACCATCCCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR CCA 90 bp GAGGGCCTCGGTTGCGTGAGAAAGAGGCTCTCTTGTTTCCTGTCGTaGACATGTGGACCTCAGGAGCCGAGATGCTGCCTGTGCTGCTCG +
Preference number: 1 (lower is better)
Translates to: EGLGCVRKRLSCFLS*TCGPQEPRCCLCCS
Trigger: CGAGCAGCACAGGCAGCATCTCGGCTCCTGAGGTCCACATGTCCACGACAGGAAACAAGAGAGCCTCTTTCTCACGCAACCGAGGCCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR TCA 90 bp GGGCTGCTGCCAGACTTGTGGGATGATGCTCCATTGCTCCGCCCATaGGGGCCTCGGTTGCGTGAGAAAGAGGCTCTCTTGTTTCCTGTC +
Preference number: 1 (lower is better)
Translates to: GLLPDLWDDAPLLRP*GPRLREKEALLFPV
Trigger: GACAGGAAACAAGAGAGCCTCTTTCTCACGCAACCGAGGCCCTCATGGGCGGAGCAATGGAGCATCATCCCACAAGTCTGGCAGCAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR TCA 90 bp CTCACCAAGGGGAGAGCCTTGAGGGCTTGTGGCCCTGGAGTGGAATaGACAAACTCCAGGCCACTGGATTCTGTGGTGGTGGCAGTCACC +
Preference number: 1 (lower is better)
Translates to: LTKGRALRACGPGVE*TNSRPLDSVVVAVT
Trigger: GGTGACTGCCACCACCACAGAATCCAGTGGCCTGGAGTTTGTTCATTCCACTCCAGGGCCACAAGCCCTCAAGGCTCTCCCCTTGGTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR CCA 90 bp CGGTTGCGTGAGAAAGAGGCTCTCTTGTTTCCTGTCGTGGACATGTaGACCTCAGGAGCCGAGATGCTGCCTGTGCTGCTCGAGGAGCTA +
Preference number: 1 (lower is better)
Translates to: RLREKEALLFPVVDM*TSGAEMLPVLLEEL
Trigger: TAGCTCCTCGAGCAGCACAGGCAGCATCTCGGCTCCTGAGGTCCACATGTCCACGACAGGAAACAAGAGAGCCTCTTTCTCACGCAACCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR CCA 90 bp CTCTTCGTGGCTCACCAAGGGGAGAGCCTTGAGGGCTTGTGGCCCTaGAGTGGAATGAACAAACTCCAGGCCACTGGATTCTGTGGTGGT +
Preference number: 1 (lower is better)
Translates to: LFVAHQGESLEGLWP*SGMNKLQATGFCGG
Trigger: ACCACCACAGAATCCAGTGGCCTGGAGTTTGTTCATTCCACTCCAGGGCCACAAGCCCTCAAGGCTCTCCCCTTGGTGAGCCACGAAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR GCA 90 bp GTACCACAGGGGCAGCCACAGCCAGTAGATCCACCAAGAAATTGCTaGTCCAGTACTGCCTCACAACACTGCCCTGGGACAGTGAGAGGA +
Preference number: 1 (lower is better)
Translates to: VPQGQPQPVDPPRNC*SSTASQHCPGTVRG
Trigger: TCCTCTCACTGTCCCAGGGCAGTGTTGTGAGGCAGTACTGGAGCAGCAATTTCTTGGTGGATCTACTGGCTGTGGCTGCCCCTGTGGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR GCA 90 bp TGGGTACCACAGGGGCAGCCACAGCCAGTAGATCCACCAAGAAATTaGTGCTCCAGTACTGCCTCACAACACTGCCCTGGGACAGTGAGA +
Preference number: 1 (lower is better)
Translates to: WVPQGQPQPVDPPRN*CSSTASQHCPGTVR
Trigger: TCTCACTGTCCCAGGGCAGTGTTGTGAGGCAGTACTGGAGCAGCAATTTCTTGGTGGATCTACTGGCTGTGGCTGCCCCTGTGGTACCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR GCA 90 bp ACTTGTGGGATGATGCTCCATTGCTCCGCCCATGAGGGCCTCGGTTaGGTGAGAAAGAGGCTCTCTTGTTTCCTGTCGTGGACATGTGGA +
Preference number: 1 (lower is better)
Translates to: TCGMMLHCSAHEGLG*VRKRLSCFLSWTCG
Trigger: TCCACATGTCCACGACAGGAAACAAGAGAGCCTCTTTCTCACGCAACCGAGGCCCTCATGGGCGGAGCAATGGAGCATCATCCCACAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR GCA 90 bp GCAGCCACAGCCAGTAGATCCACCAAGAAATTGCTGCTCCAGTACTaGCTCACAACACTGCCCTGGGACAGTGAGAGGACACTGTCCAAT +
Preference number: 1 (lower is better)
Translates to: AATASRSTKKLLLQY*LTTLPWDSERTLSN
Trigger: ATTGGACAGTGTCCTCTCACTGTCCCAGGGCAGTGTTGTGAGGCAGTACTGGAGCAGCAATTTCTTGGTGGATCTACTGGCTGTGGCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR CCA 90 bp GCCCTGGAGTGGAATGAACAAACTCCAGGCCACTGGATTCTGTGGTaGTGGCAGTCACCATCTCATCTAACAGATCTGTGCCTTCAGCCA +
Preference number: 1 (lower is better)
Translates to: ALEWNEQTPGHWILW*WQSPSHLTDLCLQP
Trigger: TGGCTGAAGGCACAGATCTGTTAGATGAGATGGTGACTGCCACCACCACAGAATCCAGTGGCCTGGAGTTTGTTCATTCCACTCCAGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR CCA 90 bp TCTCATGAGGCGATTTGCATGGGCTTCCATAGCCCCCTTGCTGAATaGGATCTCCACAGGAGACAGAAGGATGGCCGAGTTAGGACTTCT +
Preference number: 1 (lower is better)
Translates to: SHEAICMGFHSPLAE*DLHRRQKDGRVRTS
Trigger: AGAAGTCCTAACTCGGCCATCCTTCTGTCTCCTGTGGAGATCCCATTCAGCAAGGGGGCTATGGAAGCCCATGCAAATCGCCTCATGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR GCA 90 bp TGGTGGCAGTCACCATCTCATCTAACAGATCTGTGCCTTCAGCCATaGTGTCTCCCACCAGAAGCTCACTGTCAGCACCTTCCTCTGTTA +
Preference number: 1 (lower is better)
Translates to: WWQSPSHLTDLCLQP*CLPPEAHCQHLPLL
Trigger: TAACAGAGGAAGGTGCTGACAGTGAGCTTCTGGTGGGAGACAGCATGGCTGAAGGCACAGATCTGTTAGATGAGATGGTGACTGCCACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR CCA 90 bp CTGGAGTGGAATGAACAAACTCCAGGCCACTGGATTCTGTGGTGGTaGCAGTCACCATCTCATCTAACAGATCTGTGCCTTCAGCCATGC +
Preference number: 1 (lower is better)
Translates to: LEWNEQTPGHWILWW*QSPSHLTDLCLQPC
Trigger: GCATGGCTGAAGGCACAGATCTGTTAGATGAGATGGTGACTGCCACCACCACAGAATCCAGTGGCCTGGAGTTTGTTCATTCCACTCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR CCA 90 bp AGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTaGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGAAAATACCT +
Preference number: 1 (lower is better)
Translates to: RQHGRGISMLSTPLW*DSYQNQVSMPWKIP
Trigger: AGGTATTTTCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR CCA 90 bp CTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTaGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGAAAATA +
Preference number: 1 (lower is better)
Translates to: LRQHGRGISMLSTPL*WDSYQNQVSMPWKI
Trigger: TATTTTCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR TCA 90 bp GAAATTGCTGCTCCAGTACTGCCTCACAACACTGCCCTGGGACAGTaGGAGGACACTGTCCAATCTTTCTTCTGTGTAGGCTGCAAAATC +
Preference number: 1 (lower is better)
Translates to: EIAAPVLPHNTALGQ*EDTVQSFFCVGCKI
Trigger: GATTTTGCAGCCTACACAGAAGAAAGATTGGACAGTGTCCTCTCACTGTCCCAGGGCAGTGTTGTGAGGCAGTACTGGAGCAGCAATTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR GCA 90 bp GAACCACAATGGTCGAGTTATAGCCCAGTGGGAAAACACTTACCTTaGATTTGTAAGGCTCAAGGCTCAAGGCTCAAGGCTTTAGGTTCA +
Preference number: 1 (lower is better)
Translates to: EPQWSSYSPVGKHLP*ICKAQGSRLKALGS
Trigger: TGAACCTAAAGCCTTGAGCCTTGAGCCTTGAGCCTTACAAATGCAAGGTAAGTGTTTTCCCACTGGGCTATAACTCGACCATTGTGGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR TCA 90 bp TGCAGAGGAGTCAAATACTGTTCTGGATTTGGGGGTTTGACACCGTaGTTTTCGCCACAAGACATGTATCTTCCAGACCTTCTCATGACT +
Preference number: 1 (lower is better)
Translates to: CRGVKYCSGFGGLTP*FSPQDMYLPDLLMT
Trigger: AGTCATGAGAAGGTCTGGAAGATACATGTCTTGTGGCGAAAATCACGGTGTCAAACCCCCAAATCCAGAACAGTATTTGACTCCTCTGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR TCA 90 bp CACAGTTCATCCCTCAGGGAACTATTGTGTGCCATCTCCATGCTTTaGAGCAGAGACTCCAGTTTCTTGTTTTGGATGTTTATGTCCACA +
Preference number: 1 (lower is better)
Translates to: HSSSLRELLCAISML*SRDSSFLFWMFMST
Trigger: TGTGGACATAAACATCCAAAACAAGAAACTGGAGTCTCTGCTTCAAAGCATGGAGATGGCACACAATAGTTCCCTGAGGGATGAACTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR GCA 90 bp GCCTGTGCTTATTTATATTGCTCTTTCCCAGCAAGGAGTCCAGGATaGTTTGGCAAAAGAAGCTCTGTATCTCACATTGGTCCAATTTGC +
Preference number: 1 (lower is better)
Translates to: ACAYLYCSFPARSPG*FGKRSSVSHIGPIC
Trigger: GCAAATTGGACCAATGTGAGATACAGAGCTTCTTTTGCCAAAGCATCCTGGACTCCTTGCTGGGAAAGAGCAATATAAATAAGCACAGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR TCA 90 bp ATTGGTGAGCTCTGGGCCAATGGGAGATTCTATTTTAGACGTGCATaGTACCTAAGGTTTTTCTCTGAACATCACACACATGAGCACACA +
Preference number: 1 (lower is better)
Translates to: IGELWANGRFYFRRA*YLRFFSEHHTHEHT
Trigger: TGTGTGCTCATGTGTGTGATGTTCAGAGAAAAACCTTAGGTATCATGCACGTCTAAAATAGAATCTCCCATTGGCCCAGAGCTCACCAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR GCA 90 bp CAAGACACAGTTCATCCCTCAGGGAACTATTGTGTGCCATCTCCATaGTTTGAAGCAGAGACTCCAGTTTCTTGTTTTGGATGTTTATGT +
Preference number: 1 (lower is better)
Translates to: QDTVHPSGNYCVPSP*FEAETPVSCFGCLC
Trigger: ACATAAACATCCAAAACAAGAAACTGGAGTCTCTGCTTCAAAGCATGGAGATGGCACACAATAGTTCCCTGAGGGATGAACTGTGTCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR GCA 90 bp ACTAAAACAGGAAATGCCTGCATCATCTGTTTAGATTTCCAGGCCTaGCTGGGTTATATGAGGGCCCAGTTCAGAAAAACAAATGAACAA +
Preference number: 1 (lower is better)
Translates to: TKTGNACIICLDFQA*LGYMRAQFRKTNEQ
Trigger: TTGTTCATTTGTTTTTCTGAACTGGGCCCTCATATAACCCAGGCAGGCCTGGAAATCTAAACAGATGATGCAGGCATTTCCTGTTTTAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR TCA 90 bp GCAAACATCTTGACAACCTGCTACCCTTGTCTGTATAAGTATCTGTaGGACTTCTTTTTGACATTAGGCAGTTCATGTTCTCCATGTGAG +
Preference number: 1 (lower is better)
Translates to: ANILTTCYPCLYKYL*DFFLTLGSSCSPCE
Trigger: CTCACATGGAGAACATGAACTGCCTAATGTCAAAAAGAAGTCTCACAGATACTTATACAGACAAGGGTAGCAGGTTGTCAAGATGTTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR CCA 90 bp TCAATTCCCAGAGCCCACATGGTGCTCTCTATAACTCTAGTTCCATaGGATCTAACACCTTCACACAGACAAAACACAAATGAAAATAAA +
Preference number: 1 (lower is better)
Translates to: SIPRAHMVLSITLVP*DLTPSHRQNTNENK
Trigger: TTTATTTTCATTTGTGTTTTGTCTGTGTGAAGGTGTTAGATCCCATGGAACTAGAGTTATAGAGAGCACCATGTGGGCTCTGGGAATTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR TCA 90 bp ACACATGTATTCATAGGTAGCAACTCTTTAAATAACTACAACAAATaGTTGAAAATTAGAATCAGTGCTGAGGCTCTTCCCCCTGGGCTC +
Preference number: 1 (lower is better)
Translates to: THVFIGSNSLNNYNK*LKIRISAEALPPGL
Trigger: GAGCCCAGGGGGAAGAGCCTCAGCACTGATTCTAATTTTCAATCATTTGTTGTAGTTATTTAAAGAGTTGCTACCTATGAATACATGTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR-3UTR GCA 90 bp ACAGGGGCAGCCACAGCCAGTAGATCCACCAAGAAATTGCTGCTCCAGTACTGCCAGGAGCCGAGATGCTaGCTGTGCTGCTCGAGGAGC +
Preference number: 2 (lower is better)
Translates to: TGAATASRSTKKLLLQYCQEPRC*LCCSRS
Trigger: GCTCCTCGAGCAGCACAGGCAGCATCTCGGCTCCTG...GCAGTACTGGAGCAGCAATTTCTTGGTGGATCTACTGGCTGTGGCTGCCCCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR CAA 90 bp GTGGGTACCACAGGGGCAGCCACAGCCAGTAGATCCACCAAGAAATaGCTGCTCCAGTACTGCCTCACAACACTGCCCTGGGACAGTGAG +
Preference number: 2 (lower is better)
Translates to: VGTTGAATASRSTKK*LLQYCLTTLPWDSE
Trigger: CTCACTGTCCCAGGGCAGTGTTGTGAGGCAGTACTGGAGCAGCAATTTCTTGGTGGATCTACTGGCTGTGGCTGCCCCTGTGGTACCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR TCA 90 bp ATCTGTGCCTTCAGCCATGCTGTCTCCCACCAGAAGCTCACTGTCAGCACCTTCGCCAGACTTGTGGGATaGTGCTCCATTGCTCCGCCC +
Preference number: 2 (lower is better)
Translates to: ICAFSHAVSHQKLTVSTFARLVG*CSIAPP
Trigger: GGGCGGAGCAATGGAGCATCATCCCACAAGTCTGGC...GAAGGTGCTGACAGTGAGCTTCTGGTGGGAGACAGCATGGCTGAAGGCACAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR GCA 90 bp GCCCCCTTGCTGAATGGGATCTCCACAGGAGACAGAAGGATGGCCGAGTTAGGAAGCTTGGTCCTCAGGTaGCTCACTGTGACCTCCTTC +
Preference number: 2 (lower is better)
Translates to: APLLNGISTGDRRMAELGSLVLR*LTVTSF
Trigger: GAAGGAGGTCACAGTGAGGCACCTGAGGACCAAGCT...TCCTAACTCGGCCATCCTTCTGTCTCCTGTGGAGATCCCATTCAGCAAGGGGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR CCA 90 bp TGCTCCAGTACTGCCTCACAACACTGCCCTGGGACAGTGAGAGGACACTGTCCAAAGGTCTTTTTCCCTTaGGGATGGTGGGCTGCTGCC +
Preference number: 2 (lower is better)
Translates to: CSSTASQHCPGTVRGHCPKVFFP*GWWAAA
Trigger: GGCAGCAGCCCACCATCCCCAAGGGAAAAAGACCTT...TGGACAGTGTCCTCTCACTGTCCCAGGGCAGTGTTGTGAGGCAGTACTGGAGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR TCA 90 bp ACAGGGGCAGCCACAGCCAGTAGATCCACCAAGAAATTGCTGCTCCAGTACTGCACTGCCCTGGGACAGTaGGAGGACACTGTCCAATCT +
Preference number: 2 (lower is better)
Translates to: TGAATASRSTKKLLLQYCTALGQ*EDTVQS
Trigger: AGATTGGACAGTGTCCTCTCACTGTCCCAGGGCAGT...GCAGTACTGGAGCAGCAATTTCTTGGTGGATCTACTGGCTGTGGCTGCCCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR CCA 90 bp GCCCCCTTGCTGAATGGGATCTCCACAGGAGACAGAAGGATGGCCGAGTTAGGAGAGATGCTGAGCTTGTaGGACAGTAGTCCTGCAGCT +
Preference number: 2 (lower is better)
Translates to: APLLNGISTGDRRMAELGEMLSL*DSSPAA
Trigger: AGCTGCAGGACTACTGTCCCACAAGCTCAGCATCTC...TCCTAACTCGGCCATCCTTCTGTCTCCTGTGGAGATCCCATTCAGCAAGGGGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR TCA 90 bp GATCCACCAAGAAATTGCTGCTCCAGTACTGCCTCACAACACTGCCCTGGGACAACTCTGAATGAGCTCTaGGATGGCAGGGCTGAACGG +
Preference number: 2 (lower is better)
Translates to: DPPRNCCSSTASQHCPGTTLNEL*DGRAER
Trigger: CCGTTCAGCCCTGCCATCTCAGAGCTCATTCAGAGT...TGTCCCAGGGCAGTGTTGTGAGGCAGTACTGGAGCAGCAATTTCTTGGTGGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR CAA 90 bp TCTAGCTCTCTCATGAGGCGATTTGCATGGGCTTCCATAGCCCCCTaGCTGAATGGGATCTCCACAGGAGACAGAAGGATGGCCGAGTTA +
Preference number: 2 (lower is better)
Translates to: SSSLMRRFAWASIAP*LNGISTGDRRMAEL
Trigger: TAACTCGGCCATCCTTCTGTCTCCTGTGGAGATCCCATTCAGCAAGGGGGCTATGGAAGCCCATGCAAATCGCCTCATGAGAGAGCTAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR GCA 90 bp TGCTCCAGTACTGCCTCACAACACTGCCCTGGGACAGTGAGAGGACACTGTCCACGAGGAGCTAAAATCTaGTTCACTGCCTGGCTTTAT +
Preference number: 2 (lower is better)
Translates to: CSSTASQHCPGTVRGHCPRGAKI*FTAWLY
Trigger: ATAAAGCCAGGCAGTGAAGCAGATTTTAGCTCCTCG...TGGACAGTGTCCTCTCACTGTCCCAGGGCAGTGTTGTGAGGCAGTACTGGAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR GCA 90 bp CATAGCCCCCTTGCTGAATGGGATCTCCACAGGAGACAGAAGGATGGCCGAGTTCATCTAACAGATCTGTaGCTTCAGCCATGCTGTCTC +
Preference number: 2 (lower is better)
Translates to: HSPLAEWDLHRRQKDGRVHLTDL*LQPCCL
Trigger: GAGACAGCATGGCTGAAGGCACAGATCTGTTAGATG...AACTCGGCCATCCTTCTGTCTCCTGTGGAGATCCCATTCAGCAAGGGGGCTATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR CCA 90 bp ACTGACAGAATAGAGACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCACCTGTCGTGGACATGTaGACCTCAGGAGCCGAGATG +
Preference number: 2 (lower is better)
Translates to: TDRIETSTDHLLLLYLASPVVDM*TSGAEM
Trigger: CATCTCGGCTCCTGAGGTCCACATGTCCACGACAGG...TGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGTCTCTATTCTGTCAGT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR TCA 90 bp CAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGACAGACCAAGGGGAGAGCCTTaGGGGCTTGTGGCCCTGGAG +
Preference number: 2 (lower is better)
Translates to: QASTDYSANQIARSKTDRPRGEP*GLVALE
Trigger: CTCCAGGGCCACAAGCCCTCAAGGCTCTCCCCTTGG...TCTGTCAGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR GCA 90 bp ACAGGGGCAGCCACAGCCAGTAGATCCACCAAGAAATTGCTGCTCCAGTACTGCAGAACCAGGTTTCCATaGCTTGGAAAATACCTCTGG +
Preference number: 2 (lower is better)
Translates to: TGAATASRSTKKLLLQYCRTRFP*LGKYLW
Trigger: CCAGAGGTATTTTCCAAGGCATGGAAACCTGGTTCT...GCAGTACTGGAGCAGCAATTTCTTGGTGGATCTACTGGCTGTGGCTGCCCCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR GCA 90 bp GAACGGGCACCTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTAGAACCAGGTTTCCATaGCTTGGAAAATACCTCTGG +
Preference number: 2 (lower is better)
Translates to: ERAPQTTRQGHKHAFYTTRTRFP*LGKYLW
Trigger: CCAGAGGTATTTTCCAAGGCATGGAAACCTGGTTCT...AGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAGGTGCCCGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR-3UTR CCA 90 bp ACTGACAGAATAGAGACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCACAGACTCCTTCAGCTTaGTCCTCAGGTGCCTCACTG +
Preference number: 2 (lower is better)
Translates to: TDRIETSTDHLLLLYLASQTPSA*SSGASL
Trigger: CAGTGAGGCACCTGAGGACCAAGCTGAAGGAGTCTG...TGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGTCTCTATTCTGTCAGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR TCA 90 bp GCATGCTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCAGCGAGAAGCAAAACTaGCAGAATAGAGACTTCCAC +
Preference number: 2 (lower is better)
Translates to: ACFLHHSGGTATRTRFPCSEKQN*QNRDFH
Trigger: GTGGAAGTCTCTATTCTGTCAGTTTTGCTTCTCGCT...GCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR-3UTR GCA 90 bp CTTCCCCCTGGGCTCAATTCCCAGAGCCCACATGGTGCTCTCTATAACTCTAGTGGCAATCAATCATTTTaGACAGTGCTGCTGCTGATG +
Preference number: 2 (lower is better)
Translates to: LPPGLNSQSPHGALYNSSGNQSF*TVLLLM
Trigger: CATCAGCAGCAGCACTGTGCAAAATGATTGATTGCC...ACTAGAGTTATAGAGAGCACCATGTGGGCTCTGGGAATTGAGCCCAGGGGGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR-3UTR TCA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGAAGCGAGAAGCAAAACTaGCAGAATAGAGACTTCCAC +
Preference number: 2 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGSEKQN*QNRDFH
Trigger: GTGGAAGTCTCTATTCTGTCAGTTTTGCTTCTCGCT...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR-3UTR TCA 90 bp GTGTGCCATCTCCATGCTTTGAAGCAGAGACTCCAGTTTCTTGTTTTGGATGTTTCTTTGAGTGCCAACTaGGCCTCCACTCTGTGGCAC +
Preference number: 2 (lower is better)
Translates to: VCHLHALKQRLQFLVLDVSLSAN*ASTLWH
Trigger: GTGCCACAGAGTGGAGGCTCAGTTGGCACTCAAAGA...AACATCCAAAACAAGAAACTGGAGTCTCTGCTTCAAAGCATGGAGATGGCACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR TCA 90 bp ATCTGCAGGAGCTCTTTAGTCCTGCTTGCTGCTCTAACTCTCTACATACTAGCAAGCAAAGATAATTGGTaGGCTCTGGGCCAATGGGAG +
Preference number: 2 (lower is better)
Translates to: ICRSSLVLLAALTLYILASKDNW*ALGQWE
Trigger: CTCCCATTGGCCCAGAGCTCACCAATTATCTTTGCT...TGCTAGTATGTAGAGAGTTAGAGCAGCAAGCAGGACTAAAGAGCTCCTGCAGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR-3UTR GCA 90 bp GGTACCACAGGGGCAGCCACAGCCAGTAGATCCACCAAGAAATTGCTGCTCCAGACAAGAGCATTGGAATaGTGGAACAATTACACATTT +
Preference number: 2 (lower is better)
Translates to: GTTGAATASRSTKKLLLQTRALE*WNNYTF
Trigger: AAATGTGTAATTGTTCCAGCATTCCAATGCTCTTGT...CTGGAGCAGCAATTTCTTGGTGGATCTACTGGCTGTGGCTGCCCCTGTGGTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR GCA 90 bp ACTGACAGAATAGAGACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCATTGGTTACAGTCCCCTaGTATGCACAAGAGCATTGG +
Preference number: 2 (lower is better)
Translates to: TDRIETSTDHLLLLYLASLVTVP*YAQEHW
Trigger: CCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAA...TGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGTCTCTATTCTGTCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR-3UTR CCA 90 bp ACAGGGGCAGCCACAGCCAGTAGATCCACCAAGAAATTGCTGCTCCAGTACTGCTATGCACAAGAGCATTaGAATGCTGGAACAATTACA +
Preference number: 2 (lower is better)
Translates to: TGAATASRSTKKLLLQYCYAQEH*NAGTIT
Trigger: TGTAATTGTTCCAGCATTCCAATGCTCTTGTGCATA...GCAGTACTGGAGCAGCAATTTCTTGGTGGATCTACTGGCTGTGGCTGCCCCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR TCA 90 bp CTCAAGGCTTTAGGTTCAATTCCCAGCATAATCTTTTGCACTCATCCACTTGGTTCAGCCTGTGTCAGTTaGCTTGTAACCACGCGCATG +
Preference number: 2 (lower is better)
Translates to: LKALGSIPSIIFCTHPLGSACVS*LVTTRM
Trigger: CATGCGCGTGGTTACAAGTCAACTGACACAGGCTGA...ACCAAGTGGATGAGTGCAAAAGATTATGCTGGGAATTGAACCTAAAGCCTTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR-3UTR CCA 90 bp TTATTTTTGGTTACAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACATTTTTCCCTTGGGGATaGTGGGCTGCTGCCAGACTT +
Preference number: 2 (lower is better)
Translates to: LFLVTVPCYAQEHWNAGTFFPWG*WAAARL
Trigger: AAGTCTGGCAGCAGCCCACCATCCCCAAGGGAAAAA...TGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAAAAATAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR CCA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACGCAATGCCCTCTTCGTaGCTCACCAAGGGGAGAGCC +
Preference number: 2 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYAMPSS*LTKGRA
Trigger: GGCTCTCCCCTTGGTGAGCCACGAAGAGGGCATTGC...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR GCA 90 bp CAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAATTACACATTTTCTTGGTTACAGTCCCCTaGTATGCACAAGAGCATTGG +
Preference number: 2 (lower is better)
Translates to: QSPAMHKSIGMLEQLHIFLVTVP*YAQEHW
Trigger: CCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAA...GAAAATGTGTAATTGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR-3UTR GCA 90 bp CTTCCCCCTGGGCTCAATTCCCAGAGCCCACATGGTGCTCTCTATAACTCTAGTTACAAATATAAATGTTaGTTGAAGAAGGCCAGAGAG +
Preference number: 2 (lower is better)
Translates to: LPPGLNSQSPHGALYNSSYKYKC*LKKARE
Trigger: CTCTCTGGCCTTCTTCAAGCAACATTTATATTTGTA...ACTAGAGTTATAGAGAGCACCATGTGGGCTCTGGGAATTGAGCCCAGGGGGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR-3UTR GCA 90 bp GTGTGCCATCTCCATGCTTTGAAGCAGAGACTCCAGTTTCTTGTTTTGGATGTTGTGACCTCCTTCTGCTaGAGAGGAGTCAAATACTGT +
Preference number: 2 (lower is better)
Translates to: VCHLHALKQRLQFLVLDVVTSFC*RGVKYC
Trigger: ACAGTATTTGACTCCTCTGCAGCAGAAGGAGGTCAC...AACATCCAAAACAAGAAACTGGAGTCTCTGCTTCAAAGCATGGAGATGGCACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR CCA 90 bp TACCGACTGCTAGGATCACAGGTAGGCTCAGTCCAACCTGGTTTATGCAGTGTATTGATGCTTCTGAGATaGGAAGAAAAGTCAGTAGCT +
Preference number: 2 (lower is better)
Translates to: YRLLGSQVGSVQPGLCSVLMLLR*EEKSVA
Trigger: AGCTACTGACTTTTCTTCCCATCTCAGAAGCATCAA...TACACTGCATAAACCAGGTTGGACTGAGCCTACCTGTGATCCTAGCAGTCGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR CAA 90 bp ACACAGTTCATCCCTCAGGGAACTATTGTGTGCCATCTCCATGCTTaGAAGCAGAGACTCCAGTTTCTTGTTTTGGATGTTTATGTCCAC +
Preference number: 2 (lower is better)
Translates to: TQFIPQGTIVCHLHA*KQRLQFLVLDVYVH
Trigger: GTGGACATAAACATCCAAAACAAGAAACTGGAGTCTCTGCTTCAAAGCATGGAGATGGCACACAATAGTTCCCTGAGGGATGAACTGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR TCA 90 bp CAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAATTACACATTTTCAGCGAGAAGCAAAACTaGCAGAATAGAGACTTCCAC +
Preference number: 2 (lower is better)
Translates to: QSPAMHKSIGMLEQLHIFSEKQN*QNRDFH
Trigger: GTGGAAGTCTCTATTCTGTCAGTTTTGCTTCTCGCT...GAAAATGTGTAATTGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR-3UTR TCA 90 bp TTATTTTTGGTTACAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAAGCGAGAAGCAAAACTaGCAGAATAGAGACTTCCAC +
Preference number: 2 (lower is better)
Translates to: LFLVTVPCYAQEHWNAGTSEKQN*QNRDFH
Trigger: GTGGAAGTCTCTATTCTGTCAGTTTTGCTTCTCGCT...TGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAAAAATAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR-3UTR GCA 90 bp ATCTGCAGGAGCTCTTTAGTCCTGCTTGCTGCTCTAACTCTCTACATACTAGCAATGTTTTCTGGCCTCTaGACATTGTGTACCTATCAA +
Preference number: 2 (lower is better)
Translates to: ICRSSLVLLAALTLYILAMFSGL*TLCTYQ
Trigger: TTGATAGGTACACAATGTGCAGAGGCCAGAAAACAT...TGCTAGTATGTAGAGAGTTAGAGCAGCAAGCAGGACTAAAGAGCTCCTGCAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR-3UTR CCA 90 bp ACTGACAGAATAGAGACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCATATGCACAAGAGCATTaGAATGCTGGAACAATTACA +
Preference number: 2 (lower is better)
Translates to: TDRIETSTDHLLLLYLASYAQEH*NAGTIT
Trigger: TGTAATTGTTCCAGCATTCCAATGCTCTTGTGCATA...TGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGTCTCTATTCTGTCAGT
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR-3UTR CCA 90 bp GAGAAGCTTTCCATCGAGTCAGCTCCAGATTCATCTGGAGATGCTGAGCTTGTGTCCAGTTTCTTGTTTTaGATGTTTATGTCCACAAAG +
Preference number: 2 (lower is better)
Translates to: EKLSIESAPDSSGDAELVSSFLF*MFMSTK
Trigger: CTTTGTGGACATAAACATCCAAAACAAGAAACTGGA...CACAAGCTCAGCATCTCCAGATGAATCTGGAGCTGACTCGATGGAAAGCTTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR GCA 90 bp ACTGACAGAATAGAGACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAACAAGAGCATTGGAATaGTGGAACAATTACACATTT +
Preference number: 2 (lower is better)
Translates to: TDRIETSTDHLLLLYLASTRALE*WNNYTF
Trigger: AAATGTGTAATTGTTCCAGCATTCCAATGCTCTTGT...TGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGTCTCTATTCTGTCAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR CAA 90 bp GTGCTTATTTATATTGCTCTTTCCCAGCAAGGAGTCCAGGATGCTTaGGCAAAAGAAGCTCTGTATCTCACATTGGTCCAATTTGCATTT +
Preference number: 2 (lower is better)
Translates to: VLIYIALSQQGVQDA*AKEALYLTLVQFAF
Trigger: AAATGCAAATTGGACCAATGTGAGATACAGAGCTTCTTTTGCCAAAGCATCCTGGACTCCTTGCTGGGAAAGAGCAATATAAATAAGCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR-3UTR TCA 90 bp TTATTTTTGGTTACAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAGGCATTTTCTCTTCCTaGACCATTAGTATAAGAACG +
Preference number: 2 (lower is better)
Translates to: LFLVTVPCYAQEHWNAGTGIFSS*TISIRT
Trigger: CGTTCTTATACTAATGGTTCAGGAAGAGAAAATGCC...TGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAAAAATAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR-3UTR TCA 90 bp GAAGACAACTGTGTTAGATTCCATTCTCAGAGAGTGTCTCAAATACTCCAGGCTTTTAAAATTTCTAAGTaGTTCCTCCTGCTGGTGCAG +
Preference number: 2 (lower is better)
Translates to: EDNCVRFHSQRVSQILQAFKISK*FLLLVQ
Trigger: CTGCACCAGCAGGAGGAATCACTTAGAAATTTTAAA...AGCCTGGAGTATTTGAGACACTCTCTGAGAATGGAATCTAACACAGTTGTCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR-3UTR TCA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACAGCTTTAGCACACTCTaGATGAGCTCTGAGATGGCA +
Preference number: 2 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYSFSTL*MSSEMA
Trigger: TGCCATCTCAGAGCTCATTCAGAGTGTGCTAAAGCT...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR CCA 90 bp AGTCCAGGATGCTTTGGCAAAAGAAGCTCTGTATCTCACATTGGTCCAATTTGCAGTAAGGAGGCATTTTaGTTAGATTTGGAAGACAAC +
Preference number: 2 (lower is better)
Translates to: SPGCFGKRSSVSHIGPICSKEAF*LDLEDN
Trigger: GTTGTCTTCCAAATCTAACCAAAATGCCTCCTTACT...GCAAATTGGACCAATGTGAGATACAGAGCTTCTTTTGCCAAAGCATCCTGGACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR-3UTR TCA 90 bp AATTACACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTGGCATTTTCTCTTCCTaGACCATTAGTATAAGAACG +
Preference number: 2 (lower is better)
Translates to: NYTFSNGTKQSKEITCQPGIFSS*TISIRT
Trigger: CGTTCTTATACTAATGGTTCAGGAAGAGAAAATGCC...AGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTGTAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR-3UTR GCA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACAGAACCAGGTTTCCATaGCTTGGAAAATACCTCTGG +
Preference number: 2 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYRTRFP*LGKYLW
Trigger: CCAGAGGTATTTTCCAAGGCATGGAAACCTGGTTCT...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR-3UTR GCA 90 bp TATCAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTTGGTTACAGTCCCCTaGTATGCACAAGAGCATTGG +
Preference number: 2 (lower is better)
Translates to: YQPQDDKELFKSLNQLHKLVTVP*YAQEHW
Trigger: CCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAA...CTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTGATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR-3UTR GCA 90 bp CAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGACAGAACTTGTCAAATGTGCTaGTCAGGGGTAAACTTTTCT +
Preference number: 2 (lower is better)
Translates to: QASTDYSANQIARSKTDRTCQMC*SGVNFS
Trigger: AGAAAAGTTTACCCCTGAGCAGCACATTTGACAAGT...TCTGTCAGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR TCA 90 bp TATCAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGAGCGAGAAGCAAAACTaGCAGAATAGAGACTTCCAC +
Preference number: 2 (lower is better)
Translates to: YQPQDDKELFKSLNQLHKSEKQN*QNRDFH
Trigger: GTGGAAGTCTCTATTCTGTCAGTTTTGCTTCTCGCT...CTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTGATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR-3UTR TCA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACGGCATTTTCTCTTCCTaGACCATTAGTATAAGAACG +
Preference number: 2 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYGIFSS*TISIRT
Trigger: CGTTCTTATACTAATGGTTCAGGAAGAGAAAATGCC...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR-3UTR CCA 90 bp CCATGCTTTGAAGCAGAGACTCCAGTTTCTTGTTTTGGATGTTTATGTCCACAAAGAGCATTGGAATGCTaGAACAATTACACATTTTCA +
Preference number: 2 (lower is better)
Translates to: PCFEAETPVSCFGCLCPQRALEC*NNYTFS
Trigger: TGAAAATGTGTAATTGTTCCAGCATTCCAATGCTCT...TTGTGGACATAAACATCCAAAACAAGAAACTGGAGTCTCTGCTTCAAAGCATGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR CCA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACAGAGCATTGGAATGCTaGAACAATTACACATTTTCA +
Preference number: 2 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYRALEC*NNYTFS
Trigger: TGAAAATGTGTAATTGTTCCAGCATTCCAATGCTCT...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR GCA 72 bp GCAGGGCTGAACGGCACCACGTCGGTCTGCACGGCTTaGTCCATCACCGCAATGCCCTCTTCGTGGCTCACC +
Preference number: 3 (lower is better)
Translates to: AGLNGTTSVCTA*SITAMPSSWLT
Trigger: GGTGAGCCACGAAGAGGGCATTGCGGTGATGGAGCAAGCCGTGCAGACCGACGTGGTGCCGTTCAGCCCTGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR TCA 72 bp CCTTGGGGATGGTGGGCTGCTGCCAGACTTGTGGGATaGTGCTCCATTGCTCCGCCCATGAGGGCCTCGGTT +
Preference number: 3 (lower is better)
Translates to: PWGWWAAARLVG*CSIAPPMRASV
Trigger: AACCGAGGCCCTCATGGGCGGAGCAATGGAGCATCATCCCACAAGTCTGGCAGCAGCCCACCATCCCCAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR GCA 72 bp TCTGAGATGGCAGGGCTGAACGGCACCACGTCGGTCTaGACGGCTTGCTCCATCACCGCAATGCCCTCTTCG +
Preference number: 3 (lower is better)
Translates to: SEMAGLNGTTSV*TACSITAMPSS
Trigger: CGAAGAGGGCATTGCGGTGATGGAGCAAGCCGTGCAGACCGACGTGGTGCCGTTCAGCCCTGCCATCTCAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR GCA 72 bp GTGGGCTGCTGCCAGACTTGTGGGATGATGCTCCATTaGTCCGCCCATGAGGGCCTCGGTTGCGTGAGAAAG +
Preference number: 3 (lower is better)
Translates to: VGCCQTCGMMLH*SAHEGLGCVRK
Trigger: CTTTCTCACGCAACCGAGGCCCTCATGGGCGGAGCAATGGAGCATCATCCCACAAGTCTGGCAGCAGCCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR GCA 72 bp AGTCGGCGCTCAGACTCCTTCAGCTTGGTCCTCAGGTaGCTCACTGTGACCTCCTTCTGCTGCAGAGGAGTC +
Preference number: 3 (lower is better)
Translates to: SRRSDSFSLVLR*LTVTSFCCRGV
Trigger: GACTCCTCTGCAGCAGAAGGAGGTCACAGTGAGGCACCTGAGGACCAAGCTGAAGGAGTCTGAGCGCCGACT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR TCA 72 bp GGGAGAGCCTTGAGGGCTTGTGGCCCTGGAGTGGAATaGACAAACTCCAGGCCACTGGATTCTGTGGTGGTG +
Preference number: 3 (lower is better)
Translates to: GRALRACGPGVE*TNSRPLDSVVV
Trigger: CACCACCACAGAATCCAGTGGCCTGGAGTTTGTTCATTCCACTCCAGGGCCACAAGCCCTCAAGGCTCTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR GCA 72 bp CAGGGGCAGCCACAGCCAGTAGATCCACCAAGAAATTaGTGCTCCAGTACTGCCTCACAACACTGCCCTGGG +
Preference number: 3 (lower is better)
Translates to: QGQPQPVDPPRN*CSSTASQHCPG
Trigger: CCCAGGGCAGTGTTGTGAGGCAGTACTGGAGCAGCAATTTCTTGGTGGATCTACTGGCTGTGGCTGCCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR CAA 90 bp GACCTCAGGAGCCGAGATGCTGCCTGTGCTGCTCGAGGAGCTAAAATCTGCTTCACTGATCACCTGCTGTaGCTCTACCTGGCATCAGGC +
Preference number: 3 (lower is better)
Translates to: DLRSRDAACAARGAKICFTDHLL*LYLASG
Trigger: GCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGT...GAAGCAGATTTTAGCTCCTCGAGCAGCACAGGCAGCATCTCGGCTCCTGAGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR TCA 72 bp TGCTCCATTGCTCCGCCCATGAGGGCCTCGGTTGCGTaGGAAAGAGGCTCTCTTGTTTCCTGTCGTGGACAT +
Preference number: 3 (lower is better)
Translates to: CSIAPPMRASVA*ERGSLVSCRGH
Trigger: ATGTCCACGACAGGAAACAAGAGAGCCTCTTTCTCACGCAACCGAGGCCCTCATGGGCGGAGCAATGGAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR TCA 72 bp CAATGCCCTCTTCGTGGCTCACCAAGGGGAGAGCCTTaGGGGCTTGTGGCCCTGGAGTGGAATGAACAAACT +
Preference number: 3 (lower is better)
Translates to: QCPLRGSPRGEP*GLVALEWNEQT
Trigger: AGTTTGTTCATTCCACTCCAGGGCCACAAGCCCTCAAGGCTCTCCCCTTGGTGAGCCACGAAGAGGGCATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR GCA 72 bp GGGCAGCCACAGCCAGTAGATCCACCAAGAAATTGCTaGTCCAGTACTGCCTCACAACACTGCCCTGGGACA +
Preference number: 3 (lower is better)
Translates to: GQPQPVDPPRNC*SSTASQHCPGT
Trigger: TGTCCCAGGGCAGTGTTGTGAGGCAGTACTGGAGCAGCAATTTCTTGGTGGATCTACTGGCTGTGGCTGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR GCA 72 bp GTAGACAGGATCTGTACCCCCTCTCTGAGTACTGAATaGCCACAGAACAGTGGGTACCACAGGGGCAGCCAC +
Preference number: 3 (lower is better)
Translates to: VDRICTPSLSTE*PQNSGYHRGSH
Trigger: GTGGCTGCCCCTGTGGTACCCACTGTTCTGTGGGCATTCAGTACTCAGAGAGGGGGTACAGATCCTGTCTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR CCA 72 bp GAGAAAGAGGCTCTCTTGTTTCCTGTCGTGGACATGTaGACCTCAGGAGCCGAGATGCTGCCTGTGCTGCTC +
Preference number: 3 (lower is better)
Translates to: EKEALLFPVVDM*TSGAEMLPVLL
Trigger: GAGCAGCACAGGCAGCATCTCGGCTCCTGAGGTCCACATGTCCACGACAGGAAACAAGAGAGCCTCTTTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR CAA 90 bp GAACGGGCACCTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTACTGATCACCTGCTGTaGCTCTACCTGGCATCAGGC +
Preference number: 3 (lower is better)
Translates to: ERAPQTTRQGHKHAFYTTTDHLL*LYLASG
Trigger: GCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGT...AGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAGGTGCCCGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR CCA 72 bp GGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTaGGACAGCTACCAGAACCAGGTTTCCATGCCTTGG +
Preference number: 3 (lower is better)
Translates to: GRGISMLSTPLW*DSYQNQVSMPW
Trigger: CCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR CCA 72 bp CACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTaGTGGGACAGCTACCAGAACCAGGTTTCCATGCCT +
Preference number: 3 (lower is better)
Translates to: HGRGISMLSTPL*WDSYQNQVSMP
Trigger: AGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR TCA 72 bp GCTCCAGTACTGCCTCACAACACTGCCCTGGGACAGTaGGAGGACACTGTCCAATCTTTCTTCTGTGTAGGC +
Preference number: 3 (lower is better)
Translates to: APVLPHNTALGQ*EDTVQSFFCVG
Trigger: GCCTACACAGAAGAAAGATTGGACAGTGTCCTCTCACTGTCCCAGGGCAGTGTTGTGAGGCAGTACTGGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR CAA 90 bp GAGAAGCTTTCCATCGAGTCAGCTCCAGATTCATCTGGAGATGCTGAGCTTGTGGGGCTGCTGCCAGACTaGTGGGATGATGCTCCATTG +
Preference number: 3 (lower is better)
Translates to: EKLSIESAPDSSGDAELVGLLPD*WDDAPL
Trigger: CAATGGAGCATCATCCCACAAGTCTGGCAGCAGCCC...CACAAGCTCAGCATCTCCAGATGAATCTGGAGCTGACTCGATGGAAAGCTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR CCA 72 bp GCTGCAAAATCTAGCTCTCTCATGAGGCGATTTGCATaGGCTTCCATAGCCCCCTTGCTGAATGGGATCTCC +
Preference number: 3 (lower is better)
Translates to: AAKSSSLMRRFA*ASIAPLLNGIS
Trigger: GGAGATCCCATTCAGCAAGGGGGCTATGGAAGCCCATGCAAATCGCCTCATGAGAGAGCTAGATTTTGCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR CAA 90 bp TGTCTCCCACCAGAAGCTCACTGTCAGCACCTTCCTCTGTTATCTGTTCTTCCATCAGACTCCTTCAGCTaGGTCCTCAGGTGCCTCACT +
Preference number: 3 (lower is better)
Translates to: CLPPEAHCQHLPLLSVLPSDSFS*VLRCLT
Trigger: AGTGAGGCACCTGAGGACCAAGCTGAAGGAGTCTGA...TGGAAGAACAGATAACAGAGGAAGGTGCTGACAGTGAGCTTCTGGTGGGAGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR CAA 90 bp ACTGACAGAATAGAGACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAACTGATCACCTGCTGTaGCTCTACCTGGCATCAGGC +
Preference number: 3 (lower is better)
Translates to: TDRIETSTDHLLLLYLASTDHLL*LYLASG
Trigger: GCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGT...TGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGTCTCTATTCTGTCAGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR-3UTR CAA 90 bp GAACGGGCACCTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCCAGGTTTCCATGCCTaGGAAAATACCTCTGGTTTA +
Preference number: 3 (lower is better)
Translates to: ERAPQTTRQGHKHAFYTTPGFHA*ENTSGL
Trigger: TAAACCAGAGGTATTTTCCAAGGCATGGAAACCTGG...AGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAGGTGCCCGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR-3UTR CAA 90 bp CATAGCCCCCTTGCTGAATGGGATCTCCACAGGAGACAGAAGGATGGCCGAGTTCCAGGTTTCCATGCCTaGGAAAATACCTCTGGTTTA +
Preference number: 3 (lower is better)
Translates to: HSPLAEWDLHRRQKDGRVPGFHA*ENTSGL
Trigger: TAAACCAGAGGTATTTTCCAAGGCATGGAAACCTGG...AACTCGGCCATCCTTCTGTCTCCTGTGGAGATCCCATTCAGCAAGGGGGCTATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR CAA 90 bp CAGCCACAGCCAGTAGATCCACCAAGAAATTGCTGCTCCAGTACTGCCTCACAAGAGAAAGAGGCTCTCTaGTTTCCTGTCGTGGACATG +
Preference number: 3 (lower is better)
Translates to: QPQPVDPPRNCCSSTASQEKEAL*FPVVDM
Trigger: CATGTCCACGACAGGAAACAAGAGAGCCTCTTTCTC...TTGTGAGGCAGTACTGGAGCAGCAATTTCTTGGTGGATCTACTGGCTGTGGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR CAA 90 bp ACTGACAGAATAGAGACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCACTGGAGATGCTGAGCTaGTGGGACAGTAGTCCTGCA +
Preference number: 3 (lower is better)
Translates to: TDRIETSTDHLLLLYLASLEMLS*WDSSPA
Trigger: TGCAGGACTACTGTCCCACAAGCTCAGCATCTCCAG...TGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGTCTCTATTCTGTCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR CCA 72 bp TGGAATGAACAAACTCCAGGCCACTGGATTCTGTGGTaGTGGCAGTCACCATCTCATCTAACAGATCTGTGC +
Preference number: 3 (lower is better)
Translates to: WNEQTPGHWILW*WQSPSHLTDLC
Trigger: GCACAGATCTGTTAGATGAGATGGTGACTGCCACCACCACAGAATCCAGTGGCCTGGAGTTTGTTCATTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR CCA 72 bp GAGTGGAATGAACAAACTCCAGGCCACTGGATTCTGTaGTGGTGGCAGTCACCATCTCATCTAACAGATCTG +
Preference number: 3 (lower is better)
Translates to: EWNEQTPGHWIL*WWQSPSHLTDL
Trigger: CAGATCTGTTAGATGAGATGGTGACTGCCACCACCACAGAATCCAGTGGCCTGGAGTTTGTTCATTCCACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR CCA 72 bp AGTCAGCTCCAGATTCATCTGGAGATGCTGAGCTTGTaGGACAGTAGTCCTGCAGCTTTAGCACACTCTGAA +
Preference number: 3 (lower is better)
Translates to: SQLQIHLEMLSL*DSSPAALAHSE
Trigger: TTCAGAGTGTGCTAAAGCTGCAGGACTACTGTCCCACAAGCTCAGCATCTCCAGATGAATCTGGAGCTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR CAA 90 bp CAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAATTACACATTTTCACTGATCACCTGCTGTaGCTCTACCTGGCATCAGGC +
Preference number: 3 (lower is better)
Translates to: QSPAMHKSIGMLEQLHIFTDHLL*LYLASG
Trigger: GCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGT...GAAAATGTGTAATTGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR-3UTR CAA 90 bp ATCTGTGCCTTCAGCCATGCTGTCTCCCACCAGAAGCTCACTGTCAGCACCTTCAGAGACTCCAGTTTCTaGTTTTGGATGTTTATGTCC +
Preference number: 3 (lower is better)
Translates to: ICAFSHAVSHQKLTVSTFRDSSF*FWMFMS
Trigger: GGACATAAACATCCAAAACAAGAAACTGGAGTCTCT...GAAGGTGCTGACAGTGAGCTTCTGGTGGGAGACAGCATGGCTGAAGGCACAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR GCA 72 bp CAGATCCATCTGCAGGAGCTCTTTAGTCCTGCTTGCTaGTCTAACTCTCTACATACTAGCAGCCATTCAGCT +
Preference number: 3 (lower is better)
Translates to: QIHLQELFSPAC*SNSLHTSSHSA
Trigger: AGCTGAATGGCTGCTAGTATGTAGAGAGTTAGAGCAGCAAGCAGGACTAAAGAGCTCCTGCAGATGGATCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR GCA 72 bp CACCAGATCCATCTGCAGGAGCTCTTTAGTCCTGCTTaGTGCTCTAACTCTCTACATACTAGCAGCCATTCA +
Preference number: 3 (lower is better)
Translates to: HQIHLQELFSPA*CSNSLHTSSHS
Trigger: TGAATGGCTGCTAGTATGTAGAGAGTTAGAGCAGCAAGCAGGACTAAAGAGCTCCTGCAGATGGATCTGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR GCA 72 bp TGGTCGAGTTATAGCCCAGTGGGAAAACACTTACCTTaGATTTGTAAGGCTCAAGGCTCAAGGCTCAAGGCT +
Preference number: 3 (lower is better)
Translates to: WSSYSPVGKHLP*ICKAQGSRLKA
Trigger: AGCCTTGAGCCTTGAGCCTTGAGCCTTACAAATGCAAGGTAAGTGTTTTCCCACTGGGCTATAACTCGACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR-3UTR CAA 90 bp TTATTTTTGGTTACAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAACTGATCACCTGCTGTaGCTCTACCTGGCATCAGGC +
Preference number: 3 (lower is better)
Translates to: LFLVTVPCYAQEHWNAGTTDHLL*LYLASG
Trigger: GCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGT...TGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAAAAATAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR-3UTR CAA 90 bp TACCGACTGCTAGGATCACAGGTAGGCTCAGTCCAACCTGGTTTATGCAGTGTAATGGAAAGTTCTCCGTaGATGCTTCTGAGATGGGAA +
Preference number: 3 (lower is better)
Translates to: YRLLGSQVGSVQPGLCSVMESSP*MLLRWE
Trigger: TTCCCATCTCAGAAGCATCAACGGAGAACTTTCCAT...TACACTGCATAAACCAGGTTGGACTGAGCCTACCTGTGATCCTAGCAGTCGGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR-3UTR CAA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACACCAAGGGGAGAGCCTaGAGGGCTTGTGGCCCTGGA +
Preference number: 3 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYTKGRA*RACGPG
Trigger: TCCAGGGCCACAAGCCCTCAAGGCTCTCCCCTTGGT...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR GCA 72 bp GGAAATGCCTGCATCATCTGTTTAGATTTCCAGGCCTaGCTGGGTTATATGAGGGCCCAGTTCAGAAAAACA +
Preference number: 3 (lower is better)
Translates to: GNACIICLDFQA*LGYMRAQFRKT
Trigger: TGTTTTTCTGAACTGGGCCCTCATATAACCCAGGCAGGCCTGGAAATCTAAACAGATGATGCAGGCATTTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR TCA 72 bp GCAGAGGAGTCAAATACTGTTCTGGATTTGGGGGTTTaGCACCGTGATTTTCGCCACAAGACATGTATCTTC +
Preference number: 3 (lower is better)
Translates to: AEESNTVLDLGV*HRDFRHKTCIF
Trigger: GAAGATACATGTCTTGTGGCGAAAATCACGGTGTCAAACCCCCAAATCCAGAACAGTATTTGACTCCTCTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR TCA 72 bp GTCAAATACTGTTCTGGATTTGGGGGTTTGACACCGTaGTTTTCGCCACAAGACATGTATCTTCCAGACCTT +
Preference number: 3 (lower is better)
Translates to: VKYCSGFGGLTP*FSPQDMYLPDL
Trigger: AAGGTCTGGAAGATACATGTCTTGTGGCGAAAATCACGGTGTCAAACCCCCAAATCCAGAACAGTATTTGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR TCA 72 bp TCCCTCAGGGAACTATTGTGTGCCATCTCCATGCTTTaGAGCAGAGACTCCAGTTTCTTGTTTTGGATGTTT +
Preference number: 3 (lower is better)
Translates to: SLRELLCAISML*SRDSSFLFWMF
Trigger: AAACATCCAAAACAAGAAACTGGAGTCTCTGCTTCAAAGCATGGAGATGGCACACAATAGTTCCCTGAGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR CAA 90 bp TTATTTTTGGTTACAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACACCAGGTTTCCATGCCTaGGAAAATACCTCTGGTTTA +
Preference number: 3 (lower is better)
Translates to: LFLVTVPCYAQEHWNAGTPGFHA*ENTSGL
Trigger: TAAACCAGAGGTATTTTCCAAGGCATGGAAACCTGG...TGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAAAAATAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR-3UTR CAA 90 bp GTGTGCCATCTCCATGCTTTGAAGCAGAGACTCCAGTTTCTTGTTTTGGATGTTCTATGCACAAGAGCATaGGAATGCTGGAACAATTAC +
Preference number: 3 (lower is better)
Translates to: VCHLHALKQRLQFLVLDVLCTRA*ECWNNY
Trigger: GTAATTGTTCCAGCATTCCAATGCTCTTGTGCATAG...AACATCCAAAACAAGAAACTGGAGTCTCTGCTTCAAAGCATGGAGATGGCACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
3UTR-3UTR CAA 90 bp GAAGACAACTGTGTTAGATTCCATTCTCAGAGAGTGTCTCAAATACTCCAGGCTAGGCAATCAATCATTTaGCACAGTGCTGCTGCTGAT +
Preference number: 3 (lower is better)
Translates to: EDNCVRFHSQRVSQILQARQSII*HSAAAD
Trigger: ATCAGCAGCAGCACTGTGCAAAATGATTGATTGCCT...AGCCTGGAGTATTTGAGACACTCTCTGAGAATGGAATCTAACACAGTTGTCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR-3UTR CAA 90 bp AGTCCAGGATGCTTTGGCAAAAGAAGCTCTGTATCTCACATTGGTCCAATTTGCAAATATAAATGTTGCTaGAAGAAGGCCAGAGAGGGG +
Preference number: 3 (lower is better)
Translates to: SPGCFGKRSSVSHIGPICKYKCC*KKAREG
Trigger: CCCCTCTCTGGCCTTCTTCAAGCAACATTTATATTT...GCAAATTGGACCAATGTGAGATACAGAGCTTCTTTTGCCAAAGCATCCTGGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR-3UTR CAA 90 bp ATCTGCAGGAGCTCTTTAGTCCTGCTTGCTGCTCTAACTCTCTACATACTAGCAAATAGGAGCAATCTGTaGGATTGTGAGCATGCAAAA +
Preference number: 3 (lower is better)
Translates to: ICRSSLVLLAALTLYILANRSNL*DCEHAK
Trigger: TTTTGCATGCTCACAATCCAACAGATTGCTCCTATT...TGCTAGTATGTAGAGAGTTAGAGCAGCAAGCAGGACTAAAGAGCTCCTGCAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR CCA 72 bp GAAGTCCTGGTCTTCCTGTCTCACCTTGTATGTAGCTaGGGATTAGACTTATGTGACTACATATATAGGGTA +
Preference number: 3 (lower is better)
Translates to: EVLVFLSHLVCS*GLDLCDYIYRV
Trigger: TACCCTATATATGTAGTCACATAAGTCTAATCCCCAGCTACATACAAGGTGAGACAGGAAGACCAGGACTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR CCA 72 bp AGAGCCCACATGGTGCTCTCTATAACTCTAGTTCCATaGGATCTAACACCTTCACACAGACAAAACACAAAT +
Preference number: 3 (lower is better)
Translates to: RAHMVLSITLVP*DLTPSHRQNTN
Trigger: ATTTGTGTTTTGTCTGTGTGAAGGTGTTAGATCCCATGGAACTAGAGTTATAGAGAGCACCATGTGGGCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR-3UTR CAA 90 bp CAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGACAGACCAGGTTTCCATGCCTaGGAAAATACCTCTGGTTTA +
Preference number: 3 (lower is better)
Translates to: QASTDYSANQIARSKTDRPGFHA*ENTSGL
Trigger: TAAACCAGAGGTATTTTCCAAGGCATGGAAACCTGG...TCTGTCAGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR-3UTR CAA 90 bp AATTACACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTCCAGGTTTCCATGCCTaGGAAAATACCTCTGGTTTA +
Preference number: 3 (lower is better)
Translates to: NYTFSNGTKQSKEITCQPPGFHA*ENTSGL
Trigger: TAAACCAGAGGTATTTTCCAAGGCATGGAAACCTGG...AGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTGTAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR-3UTR CAA 90 bp ATGAGTGCTATGCTGAGAGGTGACAAGCAGGGTAACATTTGTTTCCTTGATTATCCCAAACTCTATTGCTaGGCACTCAGTCTAGTATCA +
Preference number: 3 (lower is better)
Translates to: MSAMLRGDKQGNICFLDYPKLYC*ALSLVS
Trigger: TGATACTAGACTGAGTGCCAAGCAATAGAGTTTGGG...ATAATCAAGGAAACAAATGTTACCCTGCTTGTCACCTCTCAGCATAGCACTCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR TCA 72 bp CTCTGGGCCAATGGGAGATTCTATTTTAGACGTGCATaGTACCTAAGGTTTTTCTCTGAACATCACACACAT +
Preference number: 3 (lower is better)
Translates to: LWANGRFYFRRA*YLRFFSEHHTH
Trigger: ATGTGTGTGATGTTCAGAGAAAAACCTTAGGTATCATGCACGTCTAAAATAGAATCTCCCATTGGCCCAGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR GCA 72 bp TATTTATATTGCTCTTTCCCAGCAAGGAGTCCAGGATaGTTTGGCAAAAGAAGCTCTGTATCTCACATTGGT +
Preference number: 3 (lower is better)
Translates to: YLYCSFPARSPG*FGKRSSVSHIG
Trigger: ACCAATGTGAGATACAGAGCTTCTTTTGCCAAAGCATCCTGGACTCCTTGCTGGGAAAGAGCAATATAAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR CCA 72 bp TCAATCATTTTGCACAGTGCTGCTGCTGATGTTTTCTaGCCTCTGCACATTGTGTACCTATCAACAATAATG +
Preference number: 3 (lower is better)
Translates to: SIILHSAAADVF*PLHIVYLSTIM
Trigger: CATTATTGTTGATAGGTACACAATGTGCAGAGGCCAGAAAACATCAGCAGCAGCACTGTGCAAAATGATTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR CCA 72 bp TTTCTTAAGAACCACAATGGTCGAGTTATAGCCCAGTaGGAAAACACTTACCTTGCATTTGTAAGGCTCAAG +
Preference number: 3 (lower is better)
Translates to: FLKNHNGRVIAQ*ENTYLAFVRLK
Trigger: CTTGAGCCTTACAAATGCAAGGTAAGTGTTTTCCCACTGGGCTATAACTCGACCATTGTGGTTCTTAAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR-3UTR CAA 90 bp AGTTTAACATTTGGTAAAGCAACCTCTCTGACACAGAGCATTTTAGTAACCTCAGCAATGGCAAACATCTaGACAACCTGCTACCCTTGT +
Preference number: 3 (lower is better)
Translates to: SLTFGKATSLTQSILVTSAMANI*TTCYPC
Trigger: ACAAGGGTAGCAGGTTGTCAAGATGTTTGCCATTGC...TGAGGTTACTAAAATGCTCTGTGTCAGAGAGGTTGCTTTACCAAATGTTAAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR TCA 72 bp AATGAAATAGCCAATTACCCAGCTAGCGCTGAGAAATaGCCACAATACCTACCTAATTCCAAGACACATTTG +
Preference number: 3 (lower is better)
Translates to: NEIANYPASAEK*PQYLPNSKTHL
Trigger: CAAATGTGTCTTGGAATTAGGTAGGTATTGTGGTCATTTCTCAGCGCTAGCTGGGTAATTGGCTATTTCATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR GCA 72 bp CCCAAACTCTATTGCTTGGCACTCAGTCTAGTATCATaGCTAGAAAGAGAGAGGTACTGTATTACAAAACAA +
Preference number: 3 (lower is better)
Translates to: PKLYCLALSLVS*LERERYCITKQ
Trigger: TTGTTTTGTAATACAGTACCTCTCTCTTTCTAGGCATGATACTAGACTGAGTGCCAAGCAATAGAGTTTGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR TCA 72 bp TTGACAACCTGCTACCCTTGTCTGTATAAGTATCTGTaGGACTTCTTTTTGACATTAGGCAGTTCATGTTCT +
Preference number: 3 (lower is better)
Translates to: LTTCYPCLYKYL*DFFLTLGSSCS
Trigger: AGAACATGAACTGCCTAATGTCAAAAAGAAGTCTCACAGATACTTATACAGACAAGGGTAGCAGGTTGTCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR-3UTR CAA 90 bp TATCAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGCTATGCACAAGAGCATaGGAATGCTGGAACAATTAC +
Preference number: 3 (lower is better)
Translates to: YQPQDDKELFKSLNQLHKLCTRA*ECWNNY
Trigger: GTAATTGTTCCAGCATTCCAATGCTCTTGTGCATAG...CTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTGATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR CAA 72 bp GGCAGGGCTGAACGGCACCACGTCGGTCTGCACGGCTaGCTCCATCACCGCAATGCCCTCTTCGTGGCTCAC +
Preference number: 4 (lower is better)
Translates to: GRAERHHVGLHG*LHHRNALFVAH
Trigger: GTGAGCCACGAAGAGGGCATTGCGGTGATGGAGCAAGCCGTGCAGACCGACGTGGTGCCGTTCAGCCCTGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
CDS-3UTR CCA 90 bp CTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGGGTTTGCGCTGGGGCTaGAGGAACCAGCCCCGGCCC +
Preference number: 4 (lower is better)
Translates to: LSTPLWWDSYQNQVSMPWGLRWG*RNQPRP
Trigger: GGGCCGGGGCTGGTTCCTCCAGCCCCAGCGCAAACC...CCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
CDS-3UTR TCA 90 bp CAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACAGCTGAGATGGCAGGGCTaGACGGCACCACGTCGGTCT +
Preference number: 4 (lower is better)
Translates to: QTTRQGHKHAFYTTLVGQLRWQG*TAPRRS
Trigger: AGACCGACGTGGTGCCGTTCAGCCCTGCCATCTCAG...CTGTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGGCGTGGCAAGCGGTTTaGGCTGGGGCTGGAGGAACC +
Preference number: 4 (lower is better)
Translates to: LSTPLWWDSYQNQVSMPWAWQAV*AGAGGT
Trigger: GGTTCCTCCAGCCCCAGCGCAAACCGCTTGCCACGC...CCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
CDS-3UTR GCA 90 bp GAACGGGCACCTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCCTCAGGAGCCGAGATaGTGCCTGTGCTGCTCGAGG +
Preference number: 4 (lower is better)
Translates to: ERAPQTTRQGHKHAFYTTPQEPR*CLCCSR
Trigger: CCTCGAGCAGCACAGGCAGCATCTCGGCTCCTGAGG...AGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAGGTGCCCGTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGAGTCCCCTCGGCCTCTTaGCTTCTGGAGCCAGCACGG +
Preference number: 4 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGVPSAS*LLEPAR
Trigger: CCGTGCTGGCTCCAGAAGTCAAGAGGCCGAGGGGAC...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
CDS-3UTR TCA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGACCAAGGGGAGAGCCTTaGGGGCTTGTGGCCCTGGAG +
Preference number: 4 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGPRGEP*GLVALE
Trigger: CTCCAGGGCCACAAGCCCTCAAGGCTCTCCCCTTGG...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp GAACGGGCACCTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTGGGATGATGCTCCATTaGTCCGCCCATGAGGGCCTC +
Preference number: 4 (lower is better)
Translates to: ERAPQTTRQGHKHAFYTTGMMLH*SAHEGL
Trigger: GAGGCCCTCATGGGCGGAGCAATGGAGCATCATCCC...AGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAGGTGCCCGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACAGGGGATGATGCTCCATTaGTCCGCCCATGAGGGCCTC +
Preference number: 4 (lower is better)
Translates to: QTTRQGHKHAFYTTLVGQGMMLH*SAHEGL
Trigger: GAGGCCCTCATGGGCGGAGCAATGGAGCATCATCCC...CTGTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACGGGATGATGCTCCATTaGTCCGCCCATGAGGGCCTC +
Preference number: 4 (lower is better)
Translates to: LRQHGRGISMLSTPLWWDGMMLH*SAHEGL
Trigger: GAGGCCCTCATGGGCGGAGCAATGGAGCATCATCCC...GTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp GCATGCTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCGGCACCACGTCGGTCTaGACGGCTTGCTCCATCACC +
Preference number: 4 (lower is better)
Translates to: ACFLHHSGGTATRTRFPCGTTSV*TACSIT
Trigger: GGTGATGGAGCAAGCCGTGCAGACCGACGTGGTGCC...GCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACAGGCAATGCCCTCTTCGTaGCTCACCAAGGGGAGAGCC +
Preference number: 4 (lower is better)
Translates to: QTTRQGHKHAFYTTLVGQAMPSS*LTKGRA
Trigger: GGCTCTCCCCTTGGTGAGCCACGAAGAGGGCATTGC...CTGTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp GAACGGGCACCTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTGCAATGCCCTCTTCGTaGCTCACCAAGGGGAGAGCC +
Preference number: 4 (lower is better)
Translates to: ERAPQTTRQGHKHAFYTTAMPSS*LTKGRA
Trigger: GGCTCTCCCCTTGGTGAGCCACGAAGAGGGCATTGC...AGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAGGTGCCCGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp GAGAAGCTTTCCATCGAGTCAGCTCCAGATTCATCTGGAGATGCTGAGCTTGTGGTCCCCTCGGCCTCTTaGCTTCTGGAGCCAGCACGG +
Preference number: 4 (lower is better)
Translates to: EKLSIESAPDSSGDAELVVPSAS*LLEPAR
Trigger: CCGTGCTGGCTCCAGAAGTCAAGAGGCCGAGGGGAC...CACAAGCTCAGCATCTCCAGATGAATCTGGAGCTGACTCGATGGAAAGCTTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
CDS-3UTR TCA 90 bp CTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGGCTAATCGTCCTTGCTaGGCGTCCAGAGCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: LSTPLWWDSYQNQVSMPWANRPC*ASRAAG
Trigger: CCCAGCAGCTCTGGACGCTCAGCAAGGACGATTAGC...CCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGGCCAGACTTGTGGGATaGTGCTCCATTGCTCCGCCC +
Preference number: 4 (lower is better)
Translates to: LSTPLWWDSYQNQVSMPWARLVG*CSIAPP
Trigger: GGGCGGAGCAATGGAGCATCATCCCACAAGTCTGGC...CCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGACTGAGATGGCAGGGCTaGACGGCACCACGTCGGTCT +
Preference number: 4 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGLRWQG*TAPRRS
Trigger: AGACCGACGTGGTGCCGTTCAGCCCTGCCATCTCAG...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGCTCTCTGCTCCTTCTTaGTCTCTCGGAGGGGCCCCA +
Preference number: 4 (lower is better)
Translates to: LSTPLWWDSYQNQVSMPWLSAPS*SLGGAP
Trigger: TGGGGCCCCTCCGAGAGAGCAAGAAGGAGCAGAGAG...CCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGACAGGAGCCGAGATGCTaGCTGTGCTGCTCGAGGAGC +
Preference number: 4 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGQEPRC*LCCSRS
Trigger: GCTCCTCGAGCAGCACAGGCAGCATCTCGGCTCCTG...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACAGGGGATGGTGGGCTGCTaGCAGACTTGTGGGATGATG +
Preference number: 4 (lower is better)
Translates to: QTTRQGHKHAFYTTLVGQGMVGC*QTCGMM
Trigger: CATCATCCCACAAGTCTGGCAGCAGCCCACCATCCC...CTGTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACTTGGGGATGGTGGGCTaGTGCCAGACTTGTGGGATG +
Preference number: 4 (lower is better)
Translates to: LRQHGRGISMLSTPLWWDLGMVG*CQTCGM
Trigger: CATCCCACAAGTCTGGCAGCAGCCCACCATCCCCAA...GTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp GAACGGGCACCTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTTTGGGGATGGTGGGCTaGTGCCAGACTTGTGGGATG +
Preference number: 4 (lower is better)
Translates to: ERAPQTTRQGHKHAFYTTLGMVG*CQTCGM
Trigger: CATCCCACAAGTCTGGCAGCAGCCCACCATCCCCAA...AGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAGGTGCCCGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp ATCTGCAGGAGCTCTTTAGTCCTGCTTGCTGCTCTAACTCTCTACATACTAGCAGGTTTGCGCTGGGGCTaGAGGAACCAGCCCCGGCCC +
Preference number: 4 (lower is better)
Translates to: ICRSSLVLLAALTLYILAGLRWG*RNQPRP
Trigger: GGGCCGGGGCTGGTTCCTCCAGCCCCAGCGCAAACC...TGCTAGTATGTAGAGAGTTAGAGCAGCAAGCAGGACTAAAGAGCTCCTGCAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
CDS-3UTR CCA 90 bp CTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGGCAATGCCCTCTTCGTaGCTCACCAAGGGGAGAGCC +
Preference number: 4 (lower is better)
Translates to: LSTPLWWDSYQNQVSMPWAMPSS*LTKGRA
Trigger: GGCTCTCCCCTTGGTGAGCCACGAAGAGGGCATTGC...CCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp ACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACAGCTAATCGTCCTTGCTaGGCGTCCAGAGCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: TSTDHLLLLYLASGHTDTANRPC*ASRAAG
Trigger: CCCAGCAGCTCTGGACGCTCAGCAAGGACGATTAGC...TGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACAGACTGTGCCCTGTGTCTaGAGGAGTCTTCACAGGCGA +
Preference number: 4 (lower is better)
Translates to: QTTRQGHKHAFYTTLVGQTVPCV*RSLHRR
Trigger: TCGCCTGTGAAGACTCCTTCAGACACAGGGCACAGT...CTGTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACAGACTGCCCTGGGACAGTaGGAGGACACTGTCCAATCT +
Preference number: 4 (lower is better)
Translates to: QTTRQGHKHAFYTTLVGQTALGQ*EDTVQS
Trigger: AGATTGGACAGTGTCCTCTCACTGTCCCAGGGCAGT...CTGTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACACTGCCCTGGGACAGTaGGAGGACACTGTCCAATCT +
Preference number: 4 (lower is better)
Translates to: LRQHGRGISMLSTPLWWDTALGQ*EDTVQS
Trigger: AGATTGGACAGTGTCCTCTCACTGTCCCAGGGCAGT...GTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp GAACGGGCACCTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTGACAGTGTCCCCAAATaGCCTAGAGGCTTGTGCTGG +
Preference number: 4 (lower is better)
Translates to: ERAPQTTRQGHKHAFYTTDSVPK*PRGLCW
Trigger: CCAGCACAAGCCTCTAGGGCATTTGGGGACACTGTC...AGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAGGTGCCCGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
CDS-3UTR GCA 90 bp GCATGCTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCTTGGGGATGGTGGGCTaGTGCCAGACTTGTGGGATG +
Preference number: 4 (lower is better)
Translates to: ACFLHHSGGTATRTRFPCLGMVG*CQTCGM
Trigger: CATCCCACAAGTCTGGCAGCAGCCCACCATCCCCAA...GCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACAGCTTGGTCCTCAGGTaGCTCACTGTGACCTCCTTC +
Preference number: 4 (lower is better)
Translates to: LRQHGRGISMLSTPLWWDSLVLR*LTVTSF
Trigger: GAAGGAGGTCACAGTGAGGCACCTGAGGACCAAGCT...GTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACAGACTGCCTCACAACACTaGCCTGGGACAGTGAGAGGA +
Preference number: 4 (lower is better)
Translates to: QTTRQGHKHAFYTTLVGQTASQH*PGTVRG
Trigger: TCCTCTCACTGTCCCAGGGCAGTGTTGTGAGGCAGT...CTGTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACTTGCTGCTCCAGTACTaGCTCACAACACTGCCCTGG +
Preference number: 4 (lower is better)
Translates to: LRQHGRGISMLSTPLWWDLLLQY*LTTLPW
Trigger: CCAGGGCAGTGTTGTGAGGCAGTACTGGAGCAGCAA...GTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp GAACGGGCACCTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCAGGGCAAAAGCCAATaGGACTGTGCCCTGTGTCTG +
Preference number: 4 (lower is better)
Translates to: ERAPQTTRQGHKHAFYTTQGKSQ*DCALCL
Trigger: CAGACACAGGGCACAGTCCCATTGGCTTTTGCCCTG...AGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAGGTGCCCGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGTTCCCTTGGGGATGGTaGGCTGCTGCCAGACTTGTG +
Preference number: 4 (lower is better)
Translates to: LSTPLWWDSYQNQVSMPWFPWGW*AAARLV
Trigger: CACAAGTCTGGCAGCAGCCCACCATCCCCAAGGGAA...CCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp GAACGGGCACCTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCAGACTCCTTCAGCTTaGTCCTCAGGTGCCTCACTG +
Preference number: 4 (lower is better)
Translates to: ERAPQTTRQGHKHAFYTTQTPSA*SSGASL
Trigger: CAGTGAGGCACCTGAGGACCAAGCTGAAGGAGTCTG...AGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAGGTGCCCGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACAGTCAGATTCCCTCTCATaGAGTCGGCGCTCAGACTCC +
Preference number: 4 (lower is better)
Translates to: QTTRQGHKHAFYTTLVGQSDSLS*SRRSDS
Trigger: GGAGTCTGAGCGCCGACTCCATGAGAGGGAATCTGA...CTGTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp GAACGGGCACCTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTTCAGATTCCCTCTCATaGAGTCGGCGCTCAGACTCC +
Preference number: 4 (lower is better)
Translates to: ERAPQTTRQGHKHAFYTTSDSLS*SRRSDS
Trigger: GGAGTCTGAGCGCCGACTCCATGAGAGGGAATCTGA...AGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAGGTGCCCGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp ATCTGCAGGAGCTCTTTAGTCCTGCTTGCTGCTCTAACTCTCTACATACTAGCAGTCCCCTCGGCCTCTTaGCTTCTGGAGCCAGCACGG +
Preference number: 4 (lower is better)
Translates to: ICRSSLVLLAALTLYILAVPSAS*LLEPAR
Trigger: CCGTGCTGGCTCCAGAAGTCAAGAGGCCGAGGGGAC...TGCTAGTATGTAGAGAGTTAGAGCAGCAAGCAGGACTAAAGAGCTCCTGCAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
CDS-3UTR TCA 90 bp GAACGGGCACCTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGATTTGGGGGTTTaGCACCGTGATTTTCGCCAC +
Preference number: 4 (lower is better)
Translates to: ERAPQTTRQGHKHAFYTTLDLGV*HRDFRH
Trigger: GTGGCGAAAATCACGGTGTCAAACCCCCAAATCCAG...AGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAGGTGCCCGTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp ACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACATCAGGTGCCTCACTGTaGCCTCCTTCTGCTGCAGAG +
Preference number: 4 (lower is better)
Translates to: TSTDHLLLLYLASGHTDTSGASL*PPSAAE
Trigger: CTCTGCAGCAGAAGGAGGTCACAGTGAGGCACCTGA...TGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp GCATGCTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCTCTTTGAGTGCCAACTaGGCCTCCACTCTGTGGCAC +
Preference number: 4 (lower is better)
Translates to: ACFLHHSGGTATRTRFPCSLSAN*ASTLWH
Trigger: GTGCCACAGAGTGGAGGCTCAGTTGGCACTCAAAGA...GCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGTCTTTGAGTGCCAACTaGGCCTCCACTCTGTGGCAC +
Preference number: 4 (lower is better)
Translates to: LSTPLWWDSYQNQVSMPWSLSAN*ASTLWH
Trigger: GTGCCACAGAGTGGAGGCTCAGTTGGCACTCAAAGA...CCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACAGTCTGTACCCCCTCTCTaGGTACTGAATGCCCACAGA +
Preference number: 4 (lower is better)
Translates to: QTTRQGHKHAFYTTLVGQSVPPL*VLNAHR
Trigger: TCTGTGGGCATTCAGTACTCAGAGAGGGGGTACAGA...CTGTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGAGGGATGGTGGGCTGCTaGCAGACTTGTGGGATGATG +
Preference number: 4 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGGMVGC*QTCGMM
Trigger: CATCATCCCACAAGTCTGGCAGCAGCCCACCATCCC...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGATTGGGGATGGTGGGCTaGTGCCAGACTTGTGGGATG +
Preference number: 4 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGLGMVG*CQTCGM
Trigger: CATCCCACAAGTCTGGCAGCAGCCCACCATCCCCAA...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGAGCTTGGTCCTCAGGTaGCTCACTGTGACCTCCTTC +
Preference number: 4 (lower is better)
Translates to: LSTPLWWDSYQNQVSMPWSLVLR*LTVTSF
Trigger: GAAGGAGGTCACAGTGAGGCACCTGAGGACCAAGCT...CCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CATGCCAGCCTTAGAAAGGCTGTGGTGAAAGTGCAAACGGCATTTTCTCTTCCTGGCACCACGTCGGTCTaGACGGCTTGCTCCATCACC +
Preference number: 4 (lower is better)
Translates to: HASLRKAVVKVQTAFSLPGTTSV*TACSIT
Trigger: GGTGATGGAGCAAGCCGTGCAGACCGACGTGGTGCC...AGGAAGAGAAAATGCCGTTTGCACTTTCACCACAGCCTTTCTAAGGCTGGCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp GCATGCTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCTTGCTGCTCCAGTACTaGCTCACAACACTGCCCTGG +
Preference number: 4 (lower is better)
Translates to: ACFLHHSGGTATRTRFPCLLLQY*LTTLPW
Trigger: CCAGGGCAGTGTTGTGAGGCAGTACTGGAGCAGCAA...GCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp ACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACATTCCCTTGGGGATGGTaGGCTGCTGCCAGACTTGTG +
Preference number: 4 (lower is better)
Translates to: TSTDHLLLLYLASGHTDTFPWGW*AAARLV
Trigger: CACAAGTCTGGCAGCAGCCCACCATCCCCAAGGGAA...TGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGCAGACTCCTTCAGCTTaGTCCTCAGGTGCCTCACTG +
Preference number: 4 (lower is better)
Translates to: LSTPLWWDSYQNQVSMPWQTPSA*SSGASL
Trigger: CAGTGAGGCACCTGAGGACCAAGCTGAAGGAGTCTG...CCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGGGCCACTGGATTCTGTaGTGGTGGCAGTCACCATCT +
Preference number: 4 (lower is better)
Translates to: LSTPLWWDSYQNQVSMPWGHWIL*WWQSPS
Trigger: AGATGGTGACTGCCACCACCACAGAATCCAGTGGCC...CCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACGAGATGCTGAGCTTGTaGGACAGTAGTCCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: LRQHGRGISMLSTPLWWDEMLSL*DSSPAA
Trigger: AGCTGCAGGACTACTGTCCCACAAGCTCAGCATCTC...GTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGCTCACAACACTGCCCTaGGACAGTGAGAGGACACTG +
Preference number: 4 (lower is better)
Translates to: LSTPLWWDSYQNQVSMPWLTTLP*DSERTL
Trigger: CAGTGTCCTCTCACTGTCCCAGGGCAGTGTTGTGAG...CCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp GCATGCTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTCACAACACTGCCCTaGGACAGTGAGAGGACACTG +
Preference number: 4 (lower is better)
Translates to: ACFLHHSGGTATRTRFPCLTTLP*DSERTL
Trigger: CAGTGTCCTCTCACTGTCCCAGGGCAGTGTTGTGAG...GCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACCAGAGCTGCTGGGGTTaGACTCTCTACTTTCTTCCT +
Preference number: 4 (lower is better)
Translates to: LRQHGRGISMLSTPLWWDQSCWG*TLYFLP
Trigger: AGGAAGAAAGTAGAGAGTTCAACCCCAGCAGCTCTG...GTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp ACTGACAGAATAGAGACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGCTAATCGTCCTTGCTaGGCGTCCAGAGCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: TDRIETSTDHLLLLYLASANRPC*ASRAAG
Trigger: CCCAGCAGCTCTGGACGCTCAGCAAGGACGATTAGC...TGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGTCTCTATTCTGTCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CATGCCAGCCTTAGAAAGGCTGTGGTGAAAGTGCAAACGGCATTTTCTCTTCCTGCTAATCGTCCTTGCTaGGCGTCCAGAGCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: HASLRKAVVKVQTAFSLPANRPC*ASRAAG
Trigger: CCCAGCAGCTCTGGACGCTCAGCAAGGACGATTAGC...AGGAAGAGAAAATGCCGTTTGCACTTTCACCACAGCCTTTCTAAGGCTGGCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp ACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACAACTGTGCCCTGTGTCTaGAGGAGTCTTCACAGGCGA +
Preference number: 4 (lower is better)
Translates to: TSTDHLLLLYLASGHTDTTVPCV*RSLHRR
Trigger: TCGCCTGTGAAGACTCCTTCAGACACAGGGCACAGT...TGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp GCATGCTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTGGATTTGGGGGTTTaGCACCGTGATTTTCGCCAC +
Preference number: 4 (lower is better)
Translates to: ACFLHHSGGTATRTRFPCLDLGV*HRDFRH
Trigger: GTGGCGAAAATCACGGTGTCAAACCCCCAAATCCAG...GCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp ACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACATCTTTGAGTGCCAACTaGGCCTCCACTCTGTGGCAC +
Preference number: 4 (lower is better)
Translates to: TSTDHLLLLYLASGHTDTSLSAN*ASTLWH
Trigger: GTGCCACAGAGTGGAGGCTCAGTTGGCACTCAAAGA...TGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp GAACGGGCACCTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTGCCATCTCCATGCTTTaGAGCAGAGACTCCAGTTTC +
Preference number: 4 (lower is better)
Translates to: ERAPQTTRQGHKHAFYTTAISML*SRDSSF
Trigger: GAAACTGGAGTCTCTGCTTCAAAGCATGGAGATGGC...AGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAGGTGCCCGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAATTACACATTTTCCCAAGGGGAGAGCCTTaGGGGCTTGTGGCCCTGGAG +
Preference number: 4 (lower is better)
Translates to: QSPAMHKSIGMLEQLHIFPRGEP*GLVALE
Trigger: CTCCAGGGCCACAAGCCCTCAAGGCTCTCCCCTTGG...GAAAATGTGTAATTGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGAACTCTGAATGAGCTCTaGGATGGCAGGGCTGAACGG +
Preference number: 4 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGTLNEL*DGRAER
Trigger: CCGTTCAGCCCTGCCATCTCAGAGCTCATTCAGAGT...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp GCATGCTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCTCTGTACCCCCTCTCTaGGTACTGAATGCCCACAGA +
Preference number: 4 (lower is better)
Translates to: ACFLHHSGGTATRTRFPCSVPPL*VLNAHR
Trigger: TCTGTGGGCATTCAGTACTCAGAGAGGGGGTACAGA...GCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGAGCGATACCGACTGGCTaGTGGGACAACCTGTGTCAT +
Preference number: 4 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGAIPTG*WDNLCH
Trigger: ATGACACAGGTTGTCCCAGCAGCCAGTCGGTATCGC...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACTGTAGGAGCCGGAGTTaGTGCTACTTGGAGAAGAAG +
Preference number: 4 (lower is better)
Translates to: LRQHGRGISMLSTPLWWDCRSRS*CYLEKK
Trigger: CTTCTTCTCCAAGTAGCAGCAACTCCGGCTCCTACA...GTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp TGTCTCCCACCAGAAGCTCACTGTCAGCACCTTCCTCTGTTATCTGTTCTTCCAACAGGCGATACCGACTaGCTGCTGGGACAACCTGTG +
Preference number: 4 (lower is better)
Translates to: CLPPEAHCQHLPLLSVLPTGDTD*LLGQPV
Trigger: CACAGGTTGTCCCAGCAGCCAGTCGGTATCGCCTGT...TGGAAGAACAGATAACAGAGGAAGGTGCTGACAGTGAGCTTCTGGTGGGAGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
CDS-3UTR CCA 90 bp CTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACATCAGGGCAAAAGCCAATaGGACTGTGCCCTGTGTCTG +
Preference number: 4 (lower is better)
Translates to: LPLITCCCSTWHQATQIHQGKSQ*DCALCL
Trigger: CAGACACAGGGCACAGTCCCATTGGCTTTTGCCCTG...ATGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp ACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACACAGGGCAAAAGCCAATaGGACTGTGCCCTGTGTCTG +
Preference number: 4 (lower is better)
Translates to: TSTDHLLLLYLASGHTDTQGKSQ*DCALCL
Trigger: CAGACACAGGGCACAGTCCCATTGGCTTTTGCCCTG...TGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp GCATGCTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTGCTGCCAGACTTGTaGGATGATGCTCCATTGCTC +
Preference number: 4 (lower is better)
Translates to: ACFLHHSGGTATRTRFPCLLPDL*DDAPLL
Trigger: GAGCAATGGAGCATCATCCCACAAGTCTGGCAGCAG...GCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp GCATGCTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCTTTTTCCCTTGGGGATaGTGGGCTGCTGCCAGACTT +
Preference number: 4 (lower is better)
Translates to: ACFLHHSGGTATRTRFPCFFPWG*WAAARL
Trigger: AAGTCTGGCAGCAGCCCACCATCCCCAAGGGAAAAA...GCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGAAAGGTCTTTTTCCCTTaGGGATGGTGGGCTGCTGCC +
Preference number: 4 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGKVFFP*GWWAAA
Trigger: GGCAGCAGCCCACCATCCCCAAGGGAAAAAGACCTT...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACAGGTTACTGGGGCTCAGTaGATTCCTGCACAGCATAGA +
Preference number: 4 (lower is better)
Translates to: QTTRQGHKHAFYTTLVGQVTGAQ*IPAQHR
Trigger: TCTATGCTGTGCAGGAATCCACTGAGCCCCAGTAAC...CTGTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp ACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACACAGACTCCTTCAGCTTaGTCCTCAGGTGCCTCACTG +
Preference number: 4 (lower is better)
Translates to: TSTDHLLLLYLASGHTDTQTPSA*SSGASL
Trigger: CAGTGAGGCACCTGAGGACCAAGCTGAAGGAGTCTG...TGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACATCAGACTCCTTCAGCTTaGTCCTCAGGTGCCTCACTG +
Preference number: 4 (lower is better)
Translates to: LPLITCCCSTWHQATQIHQTPSA*SSGASL
Trigger: CAGTGAGGCACCTGAGGACCAAGCTGAAGGAGTCTG...ATGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACAGCACTGGATTCTGTGGTaGTGGCAGTCACCATCTCAT +
Preference number: 4 (lower is better)
Translates to: QTTRQGHKHAFYTTLVGQHWILW*WQSPSH
Trigger: ATGAGATGGTGACTGCCACCACCACAGAATCCAGTG...CTGTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGAGGCCACTGGATTCTGTaGTGGTGGCAGTCACCATCT +
Preference number: 4 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGGHWIL*WWQSPS
Trigger: AGATGGTGACTGCCACCACCACAGAATCCAGTGGCC...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACATGGCCACTGGATTCTGTaGTGGTGGCAGTCACCATCT +
Preference number: 4 (lower is better)
Translates to: LPLITCCCSTWHQATQIHGHWIL*WWQSPS
Trigger: AGATGGTGACTGCCACCACCACAGAATCCAGTGGCC...ATGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp ACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACACAAACTCCAGGCCACTaGATTCTGTGGTGGTGGCAG +
Preference number: 4 (lower is better)
Translates to: TSTDHLLLLYLASGHTDTQTPGH*ILWWWQ
Trigger: CTGCCACCACCACAGAATCCAGTGGCCTGGAGTTTG...TGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACATCAAACTCCAGGCCACTaGATTCTGTGGTGGTGGCAG +
Preference number: 4 (lower is better)
Translates to: LPLITCCCSTWHQATQIHQTPGH*ILWWWQ
Trigger: CTGCCACCACCACAGAATCCAGTGGCCTGGAGTTTG...ATGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGACAAACTCCAGGCCACTaGATTCTGTGGTGGTGGCAG +
Preference number: 4 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGQTPGH*ILWWWQ
Trigger: CTGCCACCACCACAGAATCCAGTGGCCTGGAGTTTG...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGAAGCCTTGAGGGCTTGTaGCCCTGGAGTGGAATGAAC +
Preference number: 4 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGSLEGL*PWSGMN
Trigger: GTTCATTCCACTCCAGGGCCACAAGCCCTCAAGGCT...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGGAGATGCTGAGCTTGTaGGACAGTAGTCCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: LSTPLWWDSYQNQVSMPWEMLSL*DSSPAA
Trigger: AGCTGCAGGACTACTGTCCCACAAGCTCAGCATCTC...CCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACATCTGGATTTGGGGGTTTaGCACCGTGATTTTCGCCAC +
Preference number: 4 (lower is better)
Translates to: LPLITCCCSTWHQATQIHLDLGV*HRDFRH
Trigger: GTGGCGAAAATCACGGTGTCAAACCCCCAAATCCAG...ATGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp ACTGACAGAATAGAGACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCATCAGGTGCCTCACTGTaGCCTCCTTCTGCTGCAGAG +
Preference number: 4 (lower is better)
Translates to: TDRIETSTDHLLLLYLASSGASL*PPSAAE
Trigger: CTCTGCAGCAGAAGGAGGTCACAGTGAGGCACCTGA...TGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGTCTCTATTCTGTCAGT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CATGCCAGCCTTAGAAAGGCTGTGGTGAAAGTGCAAACGGCATTTTCTCTTCCTTCAGGTGCCTCACTGTaGCCTCCTTCTGCTGCAGAG +
Preference number: 4 (lower is better)
Translates to: HASLRKAVVKVQTAFSLPSGASL*PPSAAE
Trigger: CTCTGCAGCAGAAGGAGGTCACAGTGAGGCACCTGA...AGGAAGAGAAAATGCCGTTTGCACTTTCACCACAGCCTTTCTAAGGCTGGCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp GCATGCTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTTTCTGGCTTCTTTaGGTGCCAACTGAGCCTCCA +
Preference number: 4 (lower is better)
Translates to: ACFLHHSGGTATRTRFPCLFWLL*VPTEPP
Trigger: TGGAGGCTCAGTTGGCACTCAAAGAAGCCAGAAAAG...GCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAATTACACATTTTCCTGAGATGGCAGGGCTaGACGGCACCACGTCGGTCT +
Preference number: 4 (lower is better)
Translates to: QSPAMHKSIGMLEQLHIFLRWQG*TAPRRS
Trigger: AGACCGACGTGGTGCCGTTCAGCCCTGCCATCTCAG...GAAAATGTGTAATTGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACAGAGCTTTAGCACACTCTaGATGAGCTCTGAGATGGCA +
Preference number: 4 (lower is better)
Translates to: QTTRQGHKHAFYTTLVGQSFSTL*MSSEMA
Trigger: TGCCATCTCAGAGCTCATTCAGAGTGTGCTAAAGCT...CTGTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp GAACGGGCACCTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTAGCTTTAGCACACTCTaGATGAGCTCTGAGATGGCA +
Preference number: 4 (lower is better)
Translates to: ERAPQTTRQGHKHAFYTTSFSTL*MSSEMA
Trigger: TGCCATCTCAGAGCTCATTCAGAGTGTGCTAAAGCT...AGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAGGTGCCCGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACAGGGCAGAGATAGATTCTaGGAAGCTTTCCATCGAGTC +
Preference number: 4 (lower is better)
Translates to: QTTRQGHKHAFYTTLVGQGRDRF*EAFHRV
Trigger: GACTCGATGGAAAGCTTCTCAGAATCTATCTCTGCC...CTGTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACAATCTAGCTCTCTCATaGGGCGATTTGCATGGGCTT +
Preference number: 4 (lower is better)
Translates to: LRQHGRGISMLSTPLWWDNLALS*GDLHGL
Trigger: AAGCCCATGCAAATCGCCTCATGAGAGAGCTAGATT...GTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CATGCCAGCCTTAGAAAGGCTGTGGTGAAAGTGCAAACGGCATTTTCTCTTCCTGGGATGGTGGGCTGCTaGCAGACTTGTGGGATGATG +
Preference number: 4 (lower is better)
Translates to: HASLRKAVVKVQTAFSLPGMVGC*QTCGMM
Trigger: CATCATCCCACAAGTCTGGCAGCAGCCCACCATCCC...AGGAAGAGAAAATGCCGTTTGCACTTTCACCACAGCCTTTCTAAGGCTGGCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp GCATGCTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCTGTAGGAGCCGGAGTTaGTGCTACTTGGAGAAGAAG +
Preference number: 4 (lower is better)
Translates to: ACFLHHSGGTATRTRFPCCRSRS*CYLEKK
Trigger: CTTCTTCTCCAAGTAGCAGCAACTCCGGCTCCTACA...GCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACAGGTGACCTCCTTCTGCTaGAGAGGAGTCAAATACTGT +
Preference number: 4 (lower is better)
Translates to: QTTRQGHKHAFYTTLVGQVTSFC*RGVKYC
Trigger: ACAGTATTTGACTCCTCTGCAGCAGAAGGAGGTCAC...CTGTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACAGTGTGTGCCATCTCCATaGTTTGAAGCAGAGACTCCA +
Preference number: 4 (lower is better)
Translates to: QTTRQGHKHAFYTTLVGQCVPSP*FEAETP
Trigger: TGGAGTCTCTGCTTCAAAGCATGGAGATGGCACACA...CTGTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACCCACCAAGAAATTGCTaGTCCAGTACTGCCTCACAA +
Preference number: 4 (lower is better)
Translates to: LRQHGRGISMLSTPLWWDPPRNC*SSTASQ
Trigger: TTGTGAGGCAGTACTGGAGCAGCAATTTCTTGGTGG...GTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp AGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGGTTTGCGCTGGGGCTaGAGGAACCAGCCCCGGCCC +
Preference number: 4 (lower is better)
Translates to: SEQASTDYSANQIARSKTGLRWG*RNQPRP
Trigger: GGGCCGGGGCTGGTTCCTCCAGCCCCAGCGCAAACC...AGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
CDS-3UTR CCA 90 bp GAACGGGCACCTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTATCTGCTTCACTGCCTaGCTTTATGATGCCTCCCTT +
Preference number: 4 (lower is better)
Translates to: ERAPQTTRQGHKHAFYTTICFTA*LYDASL
Trigger: AAGGGAGGCATCATAAAGCCAGGCAGTGAAGCAGAT...AGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAGGTGCCCGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp ACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACACTGCTGCCAGACTTGTaGGATGATGCTCCATTGCTC +
Preference number: 4 (lower is better)
Translates to: TSTDHLLLLYLASGHTDTLLPDL*DDAPLL
Trigger: GAGCAATGGAGCATCATCCCACAAGTCTGGCAGCAG...TGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CATGCCAGCCTTAGAAAGGCTGTGGTGAAAGTGCAAACGGCATTTTCTCTTCCTTTCCCTTGGGGATGGTaGGCTGCTGCCAGACTTGTG +
Preference number: 4 (lower is better)
Translates to: HASLRKAVVKVQTAFSLPFPWGW*AAARLV
Trigger: CACAAGTCTGGCAGCAGCCCACCATCCCCAAGGGAA...AGGAAGAGAAAATGCCGTTTGCACTTTCACCACAGCCTTTCTAAGGCTGGCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGAGAGATGCTGAGCTTGTaGGACAGTAGTCCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGEMLSL*DSSPAA
Trigger: AGCTGCAGGACTACTGTCCCACAAGCTCAGCATCTC...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGAACAACCTGTGTCATCTaGGCAGAAGCTGTTGCTGCT +
Preference number: 4 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGTTCVI*AEAVAA
Trigger: AGCAGCAACAGCTTCTGCTCAGATGACACAGGTTGT...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACATACAACCTGTGTCATCTaGGCAGAAGCTGTTGCTGCT +
Preference number: 4 (lower is better)
Translates to: LPLITCCCSTWHQATQIHTTCVI*AEAVAA
Trigger: AGCAGCAACAGCTTCTGCTCAGATGACACAGGTTGT...ATGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp ACTGACAGAATAGAGACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAACTGTGCCCTGTGTCTaGAGGAGTCTTCACAGGCGA +
Preference number: 4 (lower is better)
Translates to: TDRIETSTDHLLLLYLASTVPCV*RSLHRR
Trigger: TCGCCTGTGAAGACTCCTTCAGACACAGGGCACAGT...TGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGTCTCTATTCTGTCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAATTACACATTTTCGCCAGACTTGTGGGATaGTGCTCCATTGCTCCGCCC +
Preference number: 4 (lower is better)
Translates to: QSPAMHKSIGMLEQLHIFARLVG*CSIAPP
Trigger: GGGCGGAGCAATGGAGCATCATCCCACAAGTCTGGC...GAAAATGTGTAATTGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CATGCCAGCCTTAGAAAGGCTGTGGTGAAAGTGCAAACGGCATTTTCTCTTCCTTCTTTGAGTGCCAACTaGGCCTCCACTCTGTGGCAC +
Preference number: 4 (lower is better)
Translates to: HASLRKAVVKVQTAFSLPSLSAN*ASTLWH
Trigger: GTGCCACAGAGTGGAGGCTCAGTTGGCACTCAAAGA...AGGAAGAGAAAATGCCGTTTGCACTTTCACCACAGCCTTTCTAAGGCTGGCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGACTTTTCTGGCTTCTTTaGGTGCCAACTGAGCCTCCA +
Preference number: 4 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGLFWLL*VPTEPP
Trigger: TGGAGGCTCAGTTGGCACTCAAAGAAGCCAGAAAAG...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp ACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACACTTTTCTGGCTTCTTTaGGTGCCAACTGAGCCTCCA +
Preference number: 4 (lower is better)
Translates to: TSTDHLLLLYLASGHTDTLFWLL*VPTEPP
Trigger: TGGAGGCTCAGTTGGCACTCAAAGAAGCCAGAAAAG...TGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACATGCCATCTCCATGCTTTaGAGCAGAGACTCCAGTTTC +
Preference number: 4 (lower is better)
Translates to: LPLITCCCSTWHQATQIHAISML*SRDSSF
Trigger: GAAACTGGAGTCTCTGCTTCAAAGCATGGAGATGGC...ATGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CATGCCAGCCTTAGAAAGGCTGTGGTGAAAGTGCAAACGGCATTTTCTCTTCCTACTCTGAATGAGCTCTaGGATGGCAGGGCTGAACGG +
Preference number: 4 (lower is better)
Translates to: HASLRKAVVKVQTAFSLPTLNEL*DGRAER
Trigger: CCGTTCAGCCCTGCCATCTCAGAGCTCATTCAGAGT...AGGAAGAGAAAATGCCGTTTGCACTTTCACCACAGCCTTTCTAAGGCTGGCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp ACTGACAGAATAGAGACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAACTCTGAATGAGCTCTaGGATGGCAGGGCTGAACGG +
Preference number: 4 (lower is better)
Translates to: TDRIETSTDHLLLLYLASTLNEL*DGRAER
Trigger: CCGTTCAGCCCTGCCATCTCAGAGCTCATTCAGAGT...TGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGTCTCTATTCTGTCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp ATGAGTGCTATGCTGAGAGGTGACAAGCAGGGTAACATTTGTTTCCTTGATTATGCGTGGCAAGCGGTTTaGGCTGGGGCTGGAGGAACC +
Preference number: 4 (lower is better)
Translates to: MSAMLRGDKQGNICFLDYAWQAV*AGAGGT
Trigger: GGTTCCTCCAGCCCCAGCGCAAACCGCTTGCCACGC...ATAATCAAGGAAACAAATGTTACCCTGCTTGTCACCTCTCAGCATAGCACTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
CDS-3UTR GCA 90 bp ACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCCCCATTTCGCTGCTaGCTGCCGGCTCCCCACGCC +
Preference number: 4 (lower is better)
Translates to: TSGLNSEQASTDYSANQIAPFRC*LPAPHA
Trigger: GGCGTGGGGAGCCGGCAGGCAGCAGCGAAATGGGGC...TATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090057.6
CDS-3UTR GCA 90 bp CACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTTAGAACAGGAGCCGAGATGCTaGCTGTGCTGCTCGAGGAGC +
Preference number: 4 (lower is better)
Translates to: HIFKRHKAKQGDNMPALEQEPRC*LCCSRS
Trigger: GCTCCTCGAGCAGCACAGGCAGCATCTCGGCTCCTG...TTCTAAGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTTAGAACCTCAGGAGCCGAGATaGTGCCTGTGCTGCTCGAGG +
Preference number: 4 (lower is better)
Translates to: HIFKRHKAKQGDNMPALEPQEPR*CLCCSR
Trigger: CCTCGAGCAGCACAGGCAGCATCTCGGCTCCTGAGG...TTCTAAGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAATTACACATTTTCGGGATGATGCTCCATTaGTCCGCCCATGAGGGCCTC +
Preference number: 4 (lower is better)
Translates to: QSPAMHKSIGMLEQLHIFGMMLH*SAHEGL
Trigger: GAGGCCCTCATGGGCGGAGCAATGGAGCATCATCCC...GAAAATGTGTAATTGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGACTGTGACCTCCTTCTaGTGCAGAGGAGTCAAATAC +
Preference number: 4 (lower is better)
Translates to: LSTPLWWDSYQNQVSMPWTVTSF*CRGVKY
Trigger: GTATTTGACTCCTCTGCAGCAGAAGGAGGTCACAGT...CCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACAGCAGGGAACTATTGTGTaGCATCTCCATGCTTTGAAG +
Preference number: 4 (lower is better)
Translates to: QTTRQGHKHAFYTTLVGQQGTIV*HLHALK
Trigger: CTTCAAAGCATGGAGATGGCACACAATAGTTCCCTG...CTGTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGCATCTAACAGATCTGTaGCTTCAGCCATGCTGTCTC +
Preference number: 4 (lower is better)
Translates to: LSTPLWWDSYQNQVSMPWHLTDL*LQPCCL
Trigger: GAGACAGCATGGCTGAAGGCACAGATCTGTTAGATG...CCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CATGCCAGCCTTAGAAAGGCTGTGGTGAAAGTGCAAACGGCATTTTCTCTTCCTTTGCTGCTCCAGTACTaGCTCACAACACTGCCCTGG +
Preference number: 4 (lower is better)
Translates to: HASLRKAVVKVQTAFSLPLLLQY*LTTLPW
Trigger: CCAGGGCAGTGTTGTGAGGCAGTACTGGAGCAGCAA...AGGAAGAGAAAATGCCGTTTGCACTTTCACCACAGCCTTTCTAAGGCTGGCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp GCATGCTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCGATCCACCAAGAAATTaGTGCTCCAGTACTGCCTCA +
Preference number: 4 (lower is better)
Translates to: ACFLHHSGGTATRTRFPCDPPRN*CSSTAS
Trigger: TGAGGCAGTACTGGAGCAGCAATTTCTTGGTGGATC...GCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGGATCCACCAAGAAATTaGTGCTCCAGTACTGCCTCA +
Preference number: 4 (lower is better)
Translates to: LSTPLWWDSYQNQVSMPWDPPRN*CSSTAS
Trigger: TGAGGCAGTACTGGAGCAGCAATTTCTTGGTGGATC...CCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp GCATGCTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCATCTGCTTCACTGCCTaGCTTTATGATGCCTCCCTT +
Preference number: 4 (lower is better)
Translates to: ACFLHHSGGTATRTRFPCICFTA*LYDASL
Trigger: AAGGGAGGCATCATAAAGCCAGGCAGTGAAGCAGAT...GCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp ACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACAGTTACTGGGGCTCAGTaGATTCCTGCACAGCATAGA +
Preference number: 4 (lower is better)
Translates to: TSTDHLLLLYLASGHTDTVTGAQ*IPAQHR
Trigger: TCTATGCTGTGCAGGAATCCACTGAGCCCCAGTAAC...TGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGACACTGGATTCTGTGGTaGTGGCAGTCACCATCTCAT +
Preference number: 4 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGHWILW*WQSPSH
Trigger: ATGAGATGGTGACTGCCACCACCACAGAATCCAGTG...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR CAA 72 bp TCGAGTCAGCTCCAGATTCATCTGGAGATGCTGAGCTaGTGGGACAGTAGTCCTGCAGCTTTAGCACACTCT +
Preference number: 4 (lower is better)
Translates to: SSQLQIHLEMLS*WDSSPAALAHS
Trigger: AGAGTGTGCTAAAGCTGCAGGACTACTGTCCCACAAGCTCAGCATCTCCAGATGAATCTGGAGCTGACTCGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
CDS-3UTR TCA 90 bp TTATTTTTGGTTACAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAGCCAGACTTGTGGGATaGTGCTCCATTGCTCCGCCC +
Preference number: 4 (lower is better)
Translates to: LFLVTVPCYAQEHWNAGTARLVG*CSIAPP
Trigger: GGGCGGAGCAATGGAGCATCATCCCACAAGTCTGGC...TGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAAAAATAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CATGCCAGCCTTAGAAAGGCTGTGGTGAAAGTGCAAACGGCATTTTCTCTTCCTCTGGATTTGGGGGTTTaGCACCGTGATTTTCGCCAC +
Preference number: 4 (lower is better)
Translates to: HASLRKAVVKVQTAFSLPLDLGV*HRDFRH
Trigger: GTGGCGAAAATCACGGTGTCAAACCCCCAAATCCAG...AGGAAGAGAAAATGCCGTTTGCACTTTCACCACAGCCTTTCTAAGGCTGGCATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGACAGACTGAGATGGCAGGGCTaGACGGCACCACGTCGGTCT +
Preference number: 4 (lower is better)
Translates to: QASTDYSANQIARSKTDRLRWQG*TAPRRS
Trigger: AGACCGACGTGGTGCCGTTCAGCCCTGCCATCTCAG...TCTGTCAGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACATGGCAGAGATAGATTCTaGGAAGCTTTCCATCGAGTC +
Preference number: 4 (lower is better)
Translates to: LPLITCCCSTWHQATQIHGRDRF*EAFHRV
Trigger: GACTCGATGGAAAGCTTCTCAGAATCTATCTCTGCC...ATGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp ACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACAAATCTAGCTCTCTCATaGGGCGATTTGCATGGGCTT +
Preference number: 4 (lower is better)
Translates to: TSTDHLLLLYLASGHTDTNLALS*GDLHGL
Trigger: AAGCCCATGCAAATCGCCTCATGAGAGAGCTAGATT...TGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACATGTGACCTCCTTCTGCTaGAGAGGAGTCAAATACTGT +
Preference number: 4 (lower is better)
Translates to: LPLITCCCSTWHQATQIHVTSFC*RGVKYC
Trigger: ACAGTATTTGACTCCTCTGCAGCAGAAGGAGGTCAC...ATGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGAACTGTGACCTCCTTCTaGTGCAGAGGAGTCAAATAC +
Preference number: 4 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGTVTSF*CRGVKY
Trigger: GTATTTGACTCCTCTGCAGCAGAAGGAGGTCACAGT...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp ACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACAACTGTGACCTCCTTCTaGTGCAGAGGAGTCAAATAC +
Preference number: 4 (lower is better)
Translates to: TSTDHLLLLYLASGHTDTTVTSF*CRGVKY
Trigger: GTATTTGACTCCTCTGCAGCAGAAGGAGGTCACAGT...TGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGACATCTAACAGATCTGTaGCTTCAGCCATGCTGTCTC +
Preference number: 4 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGHLTDL*LQPCCL
Trigger: GAGACAGCATGGCTGAAGGCACAGATCTGTTAGATG...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACATTCTCTGAGTACTGAATaGCCACAGAACAGTGGGTAC +
Preference number: 4 (lower is better)
Translates to: LPLITCCCSTWHQATQIHSLSTE*PQNSGY
Trigger: GTACCCACTGTTCTGTGGGCATTCAGTACTCAGAGA...ATGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGATCTCTGAGTACTGAATaGCCACAGAACAGTGGGTAC +
Preference number: 4 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGSLSTE*PQNSGY
Trigger: GTACCCACTGTTCTGTGGGCATTCAGTACTCAGAGA...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAATTACACATTTTCACAGGCGATACCGACTaGCTGCTGGGACAACCTGTG +
Preference number: 4 (lower is better)
Translates to: QSPAMHKSIGMLEQLHIFTGDTD*LLGQPV
Trigger: CACAGGTTGTCCCAGCAGCCAGTCGGTATCGCCTGT...GAAAATGTGTAATTGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp AATTACACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTGCCAGACTTGTGGGATaGTGCTCCATTGCTCCGCCC +
Preference number: 4 (lower is better)
Translates to: NYTFSNGTKQSKEITCQPARLVG*CSIAPP
Trigger: GGGCGGAGCAATGGAGCATCATCCCACAAGTCTGGC...AGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTGTAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CATGCCAGCCTTAGAAAGGCTGTGGTGAAAGTGCAAACGGCATTTTCTCTTCCTGCCATCTCCATGCTTTaGAGCAGAGACTCCAGTTTC +
Preference number: 4 (lower is better)
Translates to: HASLRKAVVKVQTAFSLPAISML*SRDSSF
Trigger: GAAACTGGAGTCTCTGCTTCAAAGCATGGAGATGGC...AGGAAGAGAAAATGCCGTTTGCACTTTCACCACAGCCTTTCTAAGGCTGGCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp ACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATACCAAGGGGAGAGCCTTaGGGGCTTGTGGCCCTGGAG +
Preference number: 4 (lower is better)
Translates to: TSGLNSEQASTDYSANQIPRGEP*GLVALE
Trigger: CTCCAGGGCCACAAGCCCTCAAGGCTCTCCCCTTGG...TATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAATTACACATTTTCACTGCCCTGGGACAGTaGGAGGACACTGTCCAATCT +
Preference number: 4 (lower is better)
Translates to: QSPAMHKSIGMLEQLHIFTALGQ*EDTVQS
Trigger: AGATTGGACAGTGTCCTCTCACTGTCCCAGGGCAGT...GAAAATGTGTAATTGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp AATTACACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTCTCTCTGCTCCTTCTTaGTCTCTCGGAGGGGCCCCA +
Preference number: 4 (lower is better)
Translates to: NYTFSNGTKQSKEITCQPLSAPS*SLGGAP
Trigger: TGGGGCCCCTCCGAGAGAGCAAGAAGGAGCAGAGAG...AGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTGTAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGACAGACTCTCTGCTCCTTCTTaGTCTCTCGGAGGGGCCCCA +
Preference number: 4 (lower is better)
Translates to: QASTDYSANQIARSKTDRLSAPS*SLGGAP
Trigger: TGGGGCCCCTCCGAGAGAGCAAGAAGGAGCAGAGAG...TCTGTCAGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp GTGTGCCATCTCCATGCTTTGAAGCAGAGACTCCAGTTTCTTGTTTTGGATGTTGCGATACCGACTGGCTaGTGGGACAACCTGTGTCAT +
Preference number: 4 (lower is better)
Translates to: VCHLHALKQRLQFLVLDVAIPTG*WDNLCH
Trigger: ATGACACAGGTTGTCCCAGCAGCCAGTCGGTATCGC...AACATCCAAAACAAGAAACTGGAGTCTCTGCTTCAAAGCATGGAGATGGCACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
CDS-3UTR GCA 90 bp AGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTCCTCAGGAGCCGAGATaGTGCCTGTGCTGCTCGAGG +
Preference number: 4 (lower is better)
Translates to: SEQASTDYSANQIARSKTPQEPR*CLCCSR
Trigger: CCTCGAGCAGCACAGGCAGCATCTCGGCTCCTGAGG...AGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TTATTTTTGGTTACAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAGGGATGGTGGGCTGCTaGCAGACTTGTGGGATGATG +
Preference number: 4 (lower is better)
Translates to: LFLVTVPCYAQEHWNAGTGMVGC*QTCGMM
Trigger: CATCATCCCACAAGTCTGGCAGCAGCCCACCATCCC...TGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAAAAATAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TTATTTTTGGTTACAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACATTGGGGATGGTGGGCTaGTGCCAGACTTGTGGGATG +
Preference number: 4 (lower is better)
Translates to: LFLVTVPCYAQEHWNAGTLGMVG*CQTCGM
Trigger: CATCCCACAAGTCTGGCAGCAGCCCACCATCCCCAA...TGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAAAAATAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CATGCCAGCCTTAGAAAGGCTGTGGTGAAAGTGCAAACGGCATTTTCTCTTCCTTGTAGGAGCCGGAGTTaGTGCTACTTGGAGAAGAAG +
Preference number: 4 (lower is better)
Translates to: HASLRKAVVKVQTAFSLPCRSRS*CYLEKK
Trigger: CTTCTTCTCCAAGTAGCAGCAACTCCGGCTCCTACA...AGGAAGAGAAAATGCCGTTTGCACTTTCACCACAGCCTTTCTAAGGCTGGCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp ACTGACAGAATAGAGACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCATGTAGGAGCCGGAGTTaGTGCTACTTGGAGAAGAAG +
Preference number: 4 (lower is better)
Translates to: TDRIETSTDHLLLLYLASCRSRS*CYLEKK
Trigger: CTTCTTCTCCAAGTAGCAGCAACTCCGGCTCCTACA...TGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGTCTCTATTCTGTCAGT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp TTATTTTTGGTTACAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAACAGGCGATACCGACTaGCTGCTGGGACAACCTGTG +
Preference number: 4 (lower is better)
Translates to: LFLVTVPCYAQEHWNAGTTGDTD*LLGQPV
Trigger: CACAGGTTGTCCCAGCAGCCAGTCGGTATCGCCTGT...TGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAAAAATAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp GCATGCTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCAGTCAAATACTGTTCTaGATTTGGGGGTTTGACACC +
Preference number: 4 (lower is better)
Translates to: ACFLHHSGGTATRTRFPCSQILF*IWGFDT
Trigger: GGTGTCAAACCCCCAAATCCAGAACAGTATTTGACT...GCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAATTACACATTTTCCAAACTCCAGGCCACTaGATTCTGTGGTGGTGGCAG +
Preference number: 4 (lower is better)
Translates to: QSPAMHKSIGMLEQLHIFQTPGH*ILWWWQ
Trigger: CTGCCACCACCACAGAATCCAGTGGCCTGGAGTTTG...GAAAATGTGTAATTGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGACAGAGCAATGCCCTCTTCGTaGCTCACCAAGGGGAGAGCC +
Preference number: 4 (lower is better)
Translates to: QASTDYSANQIARSKTDRAMPSS*LTKGRA
Trigger: GGCTCTCCCCTTGGTGAGCCACGAAGAGGGCATTGC...TCTGTCAGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp AATTACACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTGCAATGCCCTCTTCGTaGCTCACCAAGGGGAGAGCC +
Preference number: 4 (lower is better)
Translates to: NYTFSNGTKQSKEITCQPAMPSS*LTKGRA
Trigger: GGCTCTCCCCTTGGTGAGCCACGAAGAGGGCATTGC...AGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTGTAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGACAGATCAGGTGCCTCACTGTaGCCTCCTTCTGCTGCAGAG +
Preference number: 4 (lower is better)
Translates to: QASTDYSANQIARSKTDRSGASL*PPSAAE
Trigger: CTCTGCAGCAGAAGGAGGTCACAGTGAGGCACCTGA...TCTGTCAGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp TATCAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGCCAAGGGGAGAGCCTTaGGGGCTTGTGGCCCTGGAG +
Preference number: 4 (lower is better)
Translates to: YQPQDDKELFKSLNQLHKPRGEP*GLVALE
Trigger: CTCCAGGGCCACAAGCCCTCAAGGCTCTCCCCTTGG...CTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACCTGAGATGGCAGGGCTaGACGGCACCACGTCGGTCT +
Preference number: 4 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYLRWQG*TAPRRS
Trigger: AGACCGACGTGGTGCCGTTCAGCCCTGCCATCTCAG...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp TTATTTTTGGTTACAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAACTCTGAATGAGCTCTaGGATGGCAGGGCTGAACGG +
Preference number: 4 (lower is better)
Translates to: LFLVTVPCYAQEHWNAGTTLNEL*DGRAER
Trigger: CCGTTCAGCCCTGCCATCTCAGAGCTCATTCAGAGT...TGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAAAAATAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TATCAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGGCGTGGCAAGCGGTTTaGGCTGGGGCTGGAGGAACC +
Preference number: 4 (lower is better)
Translates to: YQPQDDKELFKSLNQLHKAWQAV*AGAGGT
Trigger: GGTTCCTCCAGCCCCAGCGCAAACCGCTTGCCACGC...CTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
CDS-3UTR GCA 90 bp CACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTTAGAAGCGATACCGACTGGCTaGTGGGACAACCTGTGTCAT +
Preference number: 4 (lower is better)
Translates to: HIFKRHKAKQGDNMPALEAIPTG*WDNLCH
Trigger: ATGACACAGGTTGTCCCAGCAGCCAGTCGGTATCGC...TTCTAAGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp ACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATACAGGAGCCGAGATGCTaGCTGTGCTGCTCGAGGAGC +
Preference number: 4 (lower is better)
Translates to: TSGLNSEQASTDYSANQIQEPRC*LCCSRS
Trigger: GCTCCTCGAGCAGCACAGGCAGCATCTCGGCTCCTG...TATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACCAGGAGCCGAGATGCTaGCTGTGCTGCTCGAGGAGC +
Preference number: 4 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYQEPRC*LCCSRS
Trigger: GCTCCTCGAGCAGCACAGGCAGCATCTCGGCTCCTG...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp ACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATACCTCAGGAGCCGAGATaGTGCCTGTGCTGCTCGAGG +
Preference number: 4 (lower is better)
Translates to: TSGLNSEQASTDYSANQIPQEPR*CLCCSR
Trigger: CCTCGAGCAGCACAGGCAGCATCTCGGCTCCTGAGG...TATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TTATTTTTGGTTACAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAAGCTTGGTCCTCAGGTaGCTCACTGTGACCTCCTTC +
Preference number: 4 (lower is better)
Translates to: LFLVTVPCYAQEHWNAGTSLVLR*LTVTSF
Trigger: GAAGGAGGTCACAGTGAGGCACCTGAGGACCAAGCT...TGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAAAAATAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CATGCCAGCCTTAGAAAGGCTGTGGTGAAAGTGCAAACGGCATTTTCTCTTCCTTGTGTGCCATCTCCATaGTTTGAAGCAGAGACTCCA +
Preference number: 4 (lower is better)
Translates to: HASLRKAVVKVQTAFSLPCVPSP*FEAETP
Trigger: TGGAGTCTCTGCTTCAAAGCATGGAGATGGCACACA...AGGAAGAGAAAATGCCGTTTGCACTTTCACCACAGCCTTTCTAAGGCTGGCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp ACTGACAGAATAGAGACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCACATCTAACAGATCTGTaGCTTCAGCCATGCTGTCTC +
Preference number: 4 (lower is better)
Translates to: TDRIETSTDHLLLLYLASHLTDL*LQPCCL
Trigger: GAGACAGCATGGCTGAAGGCACAGATCTGTTAGATG...TGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGTCTCTATTCTGTCAGT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACGGCACCACGTCGGTCTaGACGGCTTGCTCCATCACC +
Preference number: 4 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYGTTSV*TACSIT
Trigger: GGTGATGGAGCAAGCCGTGCAGACCGACGTGGTGCC...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTTAGAAACTGCCTCACAACACTaGCCTGGGACAGTGAGAGGA +
Preference number: 4 (lower is better)
Translates to: HIFKRHKAKQGDNMPALETASQH*PGTVRG
Trigger: TCCTCTCACTGTCCCAGGGCAGTGTTGTGAGGCAGT...TTCTAAGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TTATTTTTGGTTACAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAACTGCCTCACAACACTaGCCTGGGACAGTGAGAGGA +
Preference number: 4 (lower is better)
Translates to: LFLVTVPCYAQEHWNAGTTASQH*PGTVRG
Trigger: TCCTCTCACTGTCCCAGGGCAGTGTTGTGAGGCAGT...TGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAAAAATAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp AATTACACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTCCTGTCGTGGACATGTaGACCTCAGGAGCCGAGATG +
Preference number: 4 (lower is better)
Translates to: NYTFSNGTKQSKEITCQPPVVDM*TSGAEM
Trigger: CATCTCGGCTCCTGAGGTCCACATGTCCACGACAGG...AGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTGTAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGACAGACCTGTCGTGGACATGTaGACCTCAGGAGCCGAGATG +
Preference number: 4 (lower is better)
Translates to: QASTDYSANQIARSKTDRPVVDM*TSGAEM
Trigger: CATCTCGGCTCCTGAGGTCCACATGTCCACGACAGG...TCTGTCAGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp AATTACACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTTTCCCTTGGGGATGGTaGGCTGCTGCCAGACTTGTG +
Preference number: 4 (lower is better)
Translates to: NYTFSNGTKQSKEITCQPFPWGW*AAARLV
Trigger: CACAAGTCTGGCAGCAGCCCACCATCCCCAAGGGAA...AGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTGTAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp ACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACAAGTCAAATACTGTTCTaGATTTGGGGGTTTGACACC +
Preference number: 4 (lower is better)
Translates to: TSTDHLLLLYLASGHTDTSQILF*IWGFDT
Trigger: GGTGTCAAACCCCCAAATCCAGAACAGTATTTGACT...TGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTTAGAATCAGATTCCCTCTCATaGAGTCGGCGCTCAGACTCC +
Preference number: 4 (lower is better)
Translates to: HIFKRHKAKQGDNMPALESDSLS*SRRSDS
Trigger: GGAGTCTGAGCGCCGACTCCATGAGAGGGAATCTGA...TTCTAAGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp TCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGTCAGGTGCCTCACTGTaGCCTCCTTCTGCTGCAGAG +
Preference number: 4 (lower is better)
Translates to: SGLNSEQASTDYSANQIASGASL*PPSAAE
Trigger: CTCTGCAGCAGAAGGAGGTCACAGTGAGGCACCTGA...CGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CATGCCAGCCTTAGAAAGGCTGTGGTGAAAGTGCAAACGGCATTTTCTCTTCCTCGAGGAGCTAAAATCTaGTTCACTGCCTGGCTTTAT +
Preference number: 4 (lower is better)
Translates to: HASLRKAVVKVQTAFSLPRGAKI*FTAWLY
Trigger: ATAAAGCCAGGCAGTGAAGCAGATTTTAGCTCCTCG...AGGAAGAGAAAATGCCGTTTGCACTTTCACCACAGCCTTTCTAAGGCTGGCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TATCAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGCCTCAGGAGCCGAGATaGTGCCTGTGCTGCTCGAGG +
Preference number: 4 (lower is better)
Translates to: YQPQDDKELFKSLNQLHKPQEPR*CLCCSR
Trigger: CCTCGAGCAGCACAGGCAGCATCTCGGCTCCTGAGG...CTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTGATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp ACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACAACTTGTCAAATGTGCTaGTCAGGGGTAAACTTTTCT +
Preference number: 4 (lower is better)
Translates to: TSTDHLLLLYLASGHTDTTCQMC*SGVNFS
Trigger: AGAAAAGTTTACCCCTGAGCAGCACATTTGACAAGT...TGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TATCAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGGGCACCACGTCGGTCTaGACGGCTTGCTCCATCACC +
Preference number: 4 (lower is better)
Translates to: YQPQDDKELFKSLNQLHKGTTSV*TACSIT
Trigger: GGTGATGGAGCAAGCCGTGCAGACCGACGTGGTGCC...CTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTGATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGACAGATTGCTGCTCCAGTACTaGCTCACAACACTGCCCTGG +
Preference number: 4 (lower is better)
Translates to: QASTDYSANQIARSKTDRLLLQY*LTTLPW
Trigger: CCAGGGCAGTGTTGTGAGGCAGTACTGGAGCAGCAA...TCTGTCAGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp AATTACACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTTTGCTGCTCCAGTACTaGCTCACAACACTGCCCTGG +
Preference number: 4 (lower is better)
Translates to: NYTFSNGTKQSKEITCQPLLLQY*LTTLPW
Trigger: CCAGGGCAGTGTTGTGAGGCAGTACTGGAGCAGCAA...AGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTGTAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TATCAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGGCACTCTCTGCTCCTTaGTCTCTCGGAGGGGCCCCA +
Preference number: 4 (lower is better)
Translates to: YQPQDDKELFKSLNQLHKALSAP*SLGGAP
Trigger: TGGGGCCCCTCCGAGAGAGCAAGGAGCAGAGAGTGC...CTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227305.2
CDS-3UTR CCA 90 bp AATTACACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTAAGGTCTTTTTCCCTTaGGGATGGTGGGCTGCTGCC +
Preference number: 4 (lower is better)
Translates to: NYTFSNGTKQSKEITCQPKVFFP*GWWAAA
Trigger: GGCAGCAGCCCACCATCCCCAAGGGAAAAAGACCTT...AGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTGTAATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp GAACGGGCACCTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTTCCAGTTTCTTGTTTTaGATGTTTATGTCCACAAAG +
Preference number: 4 (lower is better)
Translates to: ERAPQTTRQGHKHAFYTTSSFLF*MFMSTK
Trigger: CTTTGTGGACATAAACATCCAAAACAAGAAACTGGA...AGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAGGTGCCCGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAATTACACATTTTCCACTGGATTCTGTGGTaGTGGCAGTCACCATCTCAT +
Preference number: 4 (lower is better)
Translates to: QSPAMHKSIGMLEQLHIFHWILW*WQSPSH
Trigger: ATGAGATGGTGACTGCCACCACCACAGAATCCAGTG...GAAAATGTGTAATTGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp AATTACACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTGGCCACTGGATTCTGTaGTGGTGGCAGTCACCATCT +
Preference number: 4 (lower is better)
Translates to: NYTFSNGTKQSKEITCQPGHWIL*WWQSPS
Trigger: AGATGGTGACTGCCACCACCACAGAATCCAGTGGCC...AGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTGTAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGACAGAAGCCTTGAGGGCTTGTaGCCCTGGAGTGGAATGAAC +
Preference number: 4 (lower is better)
Translates to: QASTDYSANQIARSKTDRSLEGL*PWSGMN
Trigger: GTTCATTCCACTCCAGGGCCACAAGCCCTCAAGGCT...TCTGTCAGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp TCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGACTGTGCCCTGTGTCTaGAGGAGTCTTCACAGGCGA +
Preference number: 4 (lower is better)
Translates to: SGLNSEQASTDYSANQIATVPCV*RSLHRR
Trigger: TCGCCTGTGAAGACTCCTTCAGACACAGGGCACAGT...CGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp TCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGCCCCTCTCTGAGTACTaGATGCCCACAGAACAGTGG +
Preference number: 4 (lower is better)
Translates to: SGLNSEQASTDYSANQIAPLSEY*MPTEQW
Trigger: CCACTGTTCTGTGGGCATTCAGTACTCAGAGAGGGG...CGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp AGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGACAGTGTCCCCAAATaGCCTAGAGGCTTGTGCTGG +
Preference number: 4 (lower is better)
Translates to: SEQASTDYSANQIARSKTDSVPK*PRGLCW
Trigger: CCAGCACAAGCCTCTAGGGCATTTGGGGACACTGTC...AGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
CDS-3UTR GCA 90 bp CAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAATTACACATTTTCGTGACCTCCTTCTGCTaGAGAGGAGTCAAATACTGT +
Preference number: 4 (lower is better)
Translates to: QSPAMHKSIGMLEQLHIFVTSFC*RGVKYC
Trigger: ACAGTATTTGACTCCTCTGCAGCAGAAGGAGGTCAC...GAAAATGTGTAATTGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGACTGCCTCACAACACTaGCCTGGGACAGTGAGAGGA +
Preference number: 4 (lower is better)
Translates to: SGLNSEQASTDYSANQIATASQH*PGTVRG
Trigger: TCCTCTCACTGTCCCAGGGCAGTGTTGTGAGGCAGT...CGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACACAGGCGATACCGACTaGCTGCTGGGACAACCTGTG +
Preference number: 4 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYTGDTD*LLGQPV
Trigger: CACAGGTTGTCCCAGCAGCCAGTCGGTATCGCCTGT...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp ACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAACAGGCGATACCGACTaGCTGCTGGGACAACCTGTG +
Preference number: 4 (lower is better)
Translates to: TSGLNSEQASTDYSANQITGDTD*LLGQPV
Trigger: CACAGGTTGTCCCAGCAGCCAGTCGGTATCGCCTGT...TATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp TCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGCAGGGCAAAAGCCAATaGGACTGTGCCCTGTGTCTG +
Preference number: 4 (lower is better)
Translates to: SGLNSEQASTDYSANQIAQGKSQ*DCALCL
Trigger: CAGACACAGGGCACAGTCCCATTGGCTTTTGCCCTG...CGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACCCTGTCGTGGACATGTaGACCTCAGGAGCCGAGATG +
Preference number: 4 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYPVVDM*TSGAEM
Trigger: CATCTCGGCTCCTGAGGTCCACATGTCCACGACAGG...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp AATACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAACCTGTCGTGGACATGTaGACCTCAGGAGCCGAGATG +
Preference number: 4 (lower is better)
Translates to: NTSGLNSEQASTDYSANQPVVDM*TSGAEM
Trigger: CATCTCGGCTCCTGAGGTCCACATGTCCACGACAGG...TTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp TTATTTTTGGTTACAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAGTTACTGGGGCTCAGTaGATTCCTGCACAGCATAGA +
Preference number: 4 (lower is better)
Translates to: LFLVTVPCYAQEHWNAGTVTGAQ*IPAQHR
Trigger: TCTATGCTGTGCAGGAATCCACTGAGCCCCAGTAAC...TGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAAAAATAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp TCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGTCAGATTCCCTCTCATaGAGTCGGCGCTCAGACTCC +
Preference number: 4 (lower is better)
Translates to: SGLNSEQASTDYSANQIASDSLS*SRRSDS
Trigger: GGAGTCTGAGCGCCGACTCCATGAGAGGGAATCTGA...CGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp TCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGCAAACTCCAGGCCACTaGATTCTGTGGTGGTGGCAG +
Preference number: 4 (lower is better)
Translates to: SGLNSEQASTDYSANQIAQTPGH*ILWWWQ
Trigger: CTGCCACCACCACAGAATCCAGTGGCCTGGAGTTTG...CGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp AGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTAGCCTTGAGGGCTTGTaGCCCTGGAGTGGAATGAAC +
Preference number: 4 (lower is better)
Translates to: SEQASTDYSANQIARSKTSLEGL*PWSGMN
Trigger: GTTCATTCCACTCCAGGGCCACAAGCCCTCAAGGCT...AGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGACAGAGAGATGCTGAGCTTGTaGGACAGTAGTCCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: QASTDYSANQIARSKTDREMLSL*DSSPAA
Trigger: AGCTGCAGGACTACTGTCCCACAAGCTCAGCATCTC...TCTGTCAGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp TCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGCTCACAACACTGCCCTaGGACAGTGAGAGGACACTG +
Preference number: 4 (lower is better)
Translates to: SGLNSEQASTDYSANQIALTTLP*DSERTL
Trigger: CAGTGTCCTCTCACTGTCCCAGGGCAGTGTTGTGAG...CGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp AGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTCTCACAACACTGCCCTaGGACAGTGAGAGGACACTG +
Preference number: 4 (lower is better)
Translates to: SEQASTDYSANQIARSKTLTTLP*DSERTL
Trigger: CAGTGTCCTCTCACTGTCCCAGGGCAGTGTTGTGAG...AGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp AATTACACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTCAGAGCTGCTGGGGTTaGACTCTCTACTTTCTTCCT +
Preference number: 4 (lower is better)
Translates to: NYTFSNGTKQSKEITCQPQSCWG*TLYFLP
Trigger: AGGAAGAAAGTAGAGAGTTCAACCCCAGCAGCTCTG...AGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTGTAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACTCTTTGAGTGCCAACTaGGCCTCCACTCTGTGGCAC +
Preference number: 4 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYSLSAN*ASTLWH
Trigger: GTGCCACAGAGTGGAGGCTCAGTTGGCACTCAAAGA...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp AATACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAACTCTGAATGAGCTCTaGGATGGCAGGGCTGAACGG +
Preference number: 4 (lower is better)
Translates to: NTSGLNSEQASTDYSANQTLNEL*DGRAER
Trigger: CCGTTCAGCCCTGCCATCTCAGAGCTCATTCAGAGT...TTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTTAGAAAGCTTTAGCACACTCTaGATGAGCTCTGAGATGGCA +
Preference number: 4 (lower is better)
Translates to: HIFKRHKAKQGDNMPALESFSTL*MSSEMA
Trigger: TGCCATCTCAGAGCTCATTCAGAGTGTGCTAAAGCT...TTCTAAGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp TTATTTTTGGTTACAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAGGCAGAGATAGATTCTaGGAAGCTTTCCATCGAGTC +
Preference number: 4 (lower is better)
Translates to: LFLVTVPCYAQEHWNAGTGRDRF*EAFHRV
Trigger: GACTCGATGGAAAGCTTCTCAGAATCTATCTCTGCC...TGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAAAAATAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp TTATTTTTGGTTACAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAAATCTAGCTCTCTCATaGGGCGATTTGCATGGGCTT +
Preference number: 4 (lower is better)
Translates to: LFLVTVPCYAQEHWNAGTNLALS*GDLHGL
Trigger: AAGCCCATGCAAATCGCCTCATGAGAGAGCTAGATT...TGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAAAAATAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp AATACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAACTGCCCTGGGACAGTaGGAGGACACTGTCCAATCT +
Preference number: 4 (lower is better)
Translates to: NTSGLNSEQASTDYSANQTALGQ*EDTVQS
Trigger: AGATTGGACAGTGTCCTCTCACTGTCCCAGGGCAGT...TTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp AATACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAACCCCTCTCTGAGTACTaGATGCCCACAGAACAGTGG +
Preference number: 4 (lower is better)
Translates to: NTSGLNSEQASTDYSANQPLSEY*MPTEQW
Trigger: CCACTGTTCTGTGGGCATTCAGTACTCAGAGAGGGG...TTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACCCCCTCTCTGAGTACTaGATGCCCACAGAACAGTGG +
Preference number: 4 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYPLSEY*MPTEQW
Trigger: CCACTGTTCTGTGGGCATTCAGTACTCAGAGAGGGG...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp ACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGATACCGACTGGCTaGTGGGACAACCTGTGTCAT +
Preference number: 4 (lower is better)
Translates to: TSGLNSEQASTDYSANQIAIPTG*WDNLCH
Trigger: ATGACACAGGTTGTCCCAGCAGCCAGTCGGTATCGC...TATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp ACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAAGCTTGGTCCTCAGGTaGCTCACTGTGACCTCCTTC +
Preference number: 4 (lower is better)
Translates to: TSGLNSEQASTDYSANQISLVLR*LTVTSF
Trigger: GAAGGAGGTCACAGTGAGGCACCTGAGGACCAAGCT...TATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp ACTGACAGAATAGAGACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAACTTGTCAAATGTGCTaGTCAGGGGTAAACTTTTCT +
Preference number: 4 (lower is better)
Translates to: TDRIETSTDHLLLLYLASTCQMC*SGVNFS
Trigger: AGAAAAGTTTACCCCTGAGCAGCACATTTGACAAGT...TGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGTCTCTATTCTGTCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TTATTTTTGGTTACAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACACATCTAACAGATCTGTaGCTTCAGCCATGCTGTCTC +
Preference number: 4 (lower is better)
Translates to: LFLVTVPCYAQEHWNAGTHLTDL*LQPCCL
Trigger: GAGACAGCATGGCTGAAGGCACAGATCTGTTAGATG...TGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAAAAATAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACACTGCCTCACAACACTaGCCTGGGACAGTGAGAGGA +
Preference number: 4 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYTASQH*PGTVRG
Trigger: TCCTCTCACTGTCCCAGGGCAGTGTTGTGAGGCAGT...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TTATTTTTGGTTACAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAGATCCACCAAGAAATTaGTGCTCCAGTACTGCCTCA +
Preference number: 4 (lower is better)
Translates to: LFLVTVPCYAQEHWNAGTDPPRN*CSSTAS
Trigger: TGAGGCAGTACTGGAGCAGCAATTTCTTGGTGGATC...TGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAAAAATAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp AATTACACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTGGGGAATCCGGCTCCTaGAAATCTCTTTCTCCTGAT +
Preference number: 4 (lower is better)
Translates to: NYTFSNGTKQSKEITCQPGESGS*KSLSPD
Trigger: ATCAGGAGAAAGAGATTTCCAGGAGCCGGATTCCCC...AGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTGTAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGACAGAGGGGAATCCGGCTCCTaGAAATCTCTTTCTCCTGAT +
Preference number: 4 (lower is better)
Translates to: QASTDYSANQIARSKTDRGESGS*KSLSPD
Trigger: ATCAGGAGAAAGAGATTTCCAGGAGCCGGATTCCCC...TCTGTCAGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACCAGGGCAAAAGCCAATaGGACTGTGCCCTGTGTCTG +
Preference number: 4 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYQGKSQ*DCALCL
Trigger: CAGACACAGGGCACAGTCCCATTGGCTTTTGCCCTG...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp TCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGCTGCTGCCAGACTTGTaGGATGATGCTCCATTGCTC +
Preference number: 4 (lower is better)
Translates to: SGLNSEQASTDYSANQIALLPDL*DDAPLL
Trigger: GAGCAATGGAGCATCATCCCACAAGTCTGGCAGCAG...CGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp TCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGTTTTTCCCTTGGGGATaGTGGGCTGCTGCCAGACTT +
Preference number: 4 (lower is better)
Translates to: SGLNSEQASTDYSANQIAFFPWG*WAAARL
Trigger: AAGTCTGGCAGCAGCCCACCATCCCCAAGGGAAAAA...CGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp AGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTTTTTTCCCTTGGGGATaGTGGGCTGCTGCCAGACTT +
Preference number: 4 (lower is better)
Translates to: SEQASTDYSANQIARSKTFFPWG*WAAARL
Trigger: AAGTCTGGCAGCAGCCCACCATCCCCAAGGGAAAAA...AGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACAAGGTCTTTTTCCCTTaGGGATGGTGGGCTGCTGCC +
Preference number: 4 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYKVFFP*GWWAAA
Trigger: GGCAGCAGCCCACCATCCCCAAGGGAAAAAGACCTT...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp ACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAAAGGTCTTTTTCCCTTaGGGATGGTGGGCTGCTGCC +
Preference number: 4 (lower is better)
Translates to: TSGLNSEQASTDYSANQIKVFFP*GWWAAA
Trigger: GGCAGCAGCCCACCATCCCCAAGGGAAAAAGACCTT...TATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp AATTACACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTGTTACTGGGGCTCAGTaGATTCCTGCACAGCATAGA +
Preference number: 4 (lower is better)
Translates to: NYTFSNGTKQSKEITCQPVTGAQ*IPAQHR
Trigger: TCTATGCTGTGCAGGAATCCACTGAGCCCCAGTAAC...AGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTGTAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp ACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACATCCAGTTTCTTGTTTTaGATGTTTATGTCCACAAAG +
Preference number: 4 (lower is better)
Translates to: TSTDHLLLLYLASGHTDTSSFLF*MFMSTK
Trigger: CTTTGTGGACATAAACATCCAAAACAAGAAACTGGA...TGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGACAGACACTGGATTCTGTGGTaGTGGCAGTCACCATCTCAT +
Preference number: 4 (lower is better)
Translates to: QASTDYSANQIARSKTDRHWILW*WQSPSH
Trigger: ATGAGATGGTGACTGCCACCACCACAGAATCCAGTG...TCTGTCAGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp ACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGGCCACTGGATTCTGTaGTGGTGGCAGTCACCATCT +
Preference number: 4 (lower is better)
Translates to: TSGLNSEQASTDYSANQIGHWIL*WWQSPS
Trigger: AGATGGTGACTGCCACCACCACAGAATCCAGTGGCC...TATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp AATACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAACTCACAACACTGCCCTaGGACAGTGAGAGGACACTG +
Preference number: 4 (lower is better)
Translates to: NTSGLNSEQASTDYSANQLTTLP*DSERTL
Trigger: CAGTGTCCTCTCACTGTCCCAGGGCAGTGTTGTGAG...TTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR CAA 72 bp TATATTGCTCTTTCCCAGCAAGGAGTCCAGGATGCTTaGGCAAAAGAAGCTCTGTATCTCACATTGGTCCAA +
Preference number: 4 (lower is better)
Translates to: YIALSQQGVQDA*AKEALYLTLVQ
Trigger: TTGGACCAATGTGAGATACAGAGCTTCTTTTGCCAAAGCATCCTGGACTCCTTGCTGGGAAAGAGCAATATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR CAA 72 bp ATCCCTCAGGGAACTATTGTGTGCCATCTCCATGCTTaGAAGCAGAGACTCCAGTTTCTTGTTTTGGATGTT +
Preference number: 4 (lower is better)
Translates to: IPQGTIVCHLHA*KQRLQFLVLDV
Trigger: AACATCCAAAACAAGAAACTGGAGTCTCTGCTTCAAAGCATGGAGATGGCACACAATAGTTCCCTGAGGGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
CDS-3UTR TCA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACCTGGATTTGGGGGTTTaGCACCGTGATTTTCGCCAC +
Preference number: 4 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYLDLGV*HRDFRH
Trigger: GTGGCGAAAATCACGGTGTCAAACCCCCAAATCCAG...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp TCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGCTTTTCTGGCTTCTTTaGGTGCCAACTGAGCCTCCA +
Preference number: 4 (lower is better)
Translates to: SGLNSEQASTDYSANQIALFWLL*VPTEPP
Trigger: TGGAGGCTCAGTTGGCACTCAAAGAAGCCAGAAAAG...CGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp AGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTCTTTTCTGGCTTCTTTaGGTGCCAACTGAGCCTCCA +
Preference number: 4 (lower is better)
Translates to: SEQASTDYSANQIARSKTLFWLL*VPTEPP
Trigger: TGGAGGCTCAGTTGGCACTCAAAGAAGCCAGAAAAG...AGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGACAGAAGCTTTAGCACACTCTaGATGAGCTCTGAGATGGCA +
Preference number: 4 (lower is better)
Translates to: QASTDYSANQIARSKTDRSFSTL*MSSEMA
Trigger: TGCCATCTCAGAGCTCATTCAGAGTGTGCTAAAGCT...TCTGTCAGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp AATACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAATCTGTACCCCCTCTCTaGGTACTGAATGCCCACAGA +
Preference number: 4 (lower is better)
Translates to: NTSGLNSEQASTDYSANQSVPPL*VLNAHR
Trigger: TCTGTGGGCATTCAGTACTCAGAGAGGGGGTACAGA...TTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGTATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACTCTGTACCCCCTCTCTaGGTACTGAATGCCCACAGA +
Preference number: 4 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYSVPPL*VLNAHR
Trigger: TCTGTGGGCATTCAGTACTCAGAGAGGGGGTACAGA...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TATCAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGGCGATACCGACTGGCTaGTGGGACAACCTGTGTCAT +
Preference number: 4 (lower is better)
Translates to: YQPQDDKELFKSLNQLHKAIPTG*WDNLCH
Trigger: ATGACACAGGTTGTCCCAGCAGCCAGTCGGTATCGC...CTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTGATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000226214.2
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTTAGAACGAGGAGCTAAAATCTaGTTCACTGCCTGGCTTTAT +
Preference number: 4 (lower is better)
Translates to: HIFKRHKAKQGDNMPALERGAKI*FTAWLY
Trigger: ATAAAGCCAGGCAGTGAAGCAGATTTTAGCTCCTCG...TTCTAAGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGTGTAGGAGCCGGAGTTaGTGCTACTTGGAGAAGAAG +
Preference number: 4 (lower is better)
Translates to: SGLNSEQASTDYSANQIACRSRS*CYLEKK
Trigger: CTTCTTCTCCAAGTAGCAGCAACTCCGGCTCCTACA...CGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp AATTACACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTGTGACCTCCTTCTGCTaGAGAGGAGTCAAATACTGT +
Preference number: 4 (lower is better)
Translates to: NYTFSNGTKQSKEITCQPVTSFC*RGVKYC
Trigger: ACAGTATTTGACTCCTCTGCAGCAGAAGGAGGTCAC...AGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTGTAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGACAGATGTGTGCCATCTCCATaGTTTGAAGCAGAGACTCCA +
Preference number: 4 (lower is better)
Translates to: QASTDYSANQIARSKTDRCVPSP*FEAETP
Trigger: TGGAGTCTCTGCTTCAAAGCATGGAGATGGCACACA...TCTGTCAGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp AATTACACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTCCACCAAGAAATTGCTaGTCCAGTACTGCCTCACAA +
Preference number: 4 (lower is better)
Translates to: NYTFSNGTKQSKEITCQPPPRNC*SSTASQ
Trigger: TTGTGAGGCAGTACTGGAGCAGCAATTTCTTGGTGG...AGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTGTAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp AATTACACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTATCTGCTTCACTGCCTaGCTTTATGATGCCTCCCTT +
Preference number: 4 (lower is better)
Translates to: NYTFSNGTKQSKEITCQPICFTA*LYDASL
Trigger: AAGGGAGGCATCATAAAGCCAGGCAGTGAAGCAGAT...AGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTGTAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp AATACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAACTGCTGCCAGACTTGTaGGATGATGCTCCATTGCTC +
Preference number: 4 (lower is better)
Translates to: NTSGLNSEQASTDYSANQLLPDL*DDAPLL
Trigger: GAGCAATGGAGCATCATCCCACAAGTCTGGCAGCAG...TTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp AATACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAATTTTTCCCTTGGGGATaGTGGGCTGCTGCCAGACTT +
Preference number: 4 (lower is better)
Translates to: NTSGLNSEQASTDYSANQFFPWG*WAAARL
Trigger: AAGTCTGGCAGCAGCCCACCATCCCCAAGGGAAAAA...TTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGTATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp AGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGTTACTGGGGCTCAGTaGATTCCTGCACAGCATAGA +
Preference number: 4 (lower is better)
Translates to: SEQASTDYSANQIARSKTVTGAQ*IPAQHR
Trigger: TCTATGCTGTGCAGGAATCCACTGAGCCCCAGTAAC...AGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp TATCAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGAGCCTTGAGGGCTTGTaGCCCTGGAGTGGAATGAAC +
Preference number: 4 (lower is better)
Translates to: YQPQDDKELFKSLNQLHKSLEGL*PWSGMN
Trigger: GTTCATTCCACTCCAGGGCCACAAGCCCTCAAGGCT...CTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTGATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR CAA 72 bp TGTTTGATGACACCTTACACTACTCCCCAAACTCTATaGCTTGGCACTCAGTCTAGTATCATGCCTAGAAAG +
Preference number: 4 (lower is better)
Translates to: CLMTPYTTPQTL*LGTQSSIMPRK
Trigger: CTTTCTAGGCATGATACTAGACTGAGTGCCAAGCAATAGAGTTTGGGGAGTAGTGTAAGGTGTCATCAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
CDS-3UTR TCA 90 bp AATACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAACAACCTGTGTCATCTaGGCAGAAGCTGTTGCTGCT +
Preference number: 4 (lower is better)
Translates to: NTSGLNSEQASTDYSANQTTCVI*AEAVAA
Trigger: AGCAGCAACAGCTTCTGCTCAGATGACACAGGTTGT...TTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp TATCAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTCTGTACCCCCTCTCTaGGTACTGAATGCCCACAGA +
Preference number: 4 (lower is better)
Translates to: YQPQDDKELFKSLNQLHKSVPPL*VLNAHR
Trigger: TCTGTGGGCATTCAGTACTCAGAGAGGGGGTACAGA...CTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTGATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGACTGTGACCTCCTTCTaGTGCAGAGGAGTCAAATAC +
Preference number: 4 (lower is better)
Translates to: SGLNSEQASTDYSANQIATVTSF*CRGVKY
Trigger: GTATTTGACTCCTCTGCAGCAGAAGGAGGTCACAGT...CGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp AGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTTGTGTGCCATCTCCATaGTTTGAAGCAGAGACTCCA +
Preference number: 4 (lower is better)
Translates to: SEQASTDYSANQIARSKTCVPSP*FEAETP
Trigger: TGGAGTCTCTGCTTCAAAGCATGGAGATGGCACACA...AGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGCCACCAAGAAATTGCTaGTCCAGTACTGCCTCACAA +
Preference number: 4 (lower is better)
Translates to: SGLNSEQASTDYSANQIAPPRNC*SSTASQ
Trigger: TTGTGAGGCAGTACTGGAGCAGCAATTTCTTGGTGG...CGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp TATCAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTTTTTCCCTTGGGGATaGTGGGCTGCTGCCAGACTT +
Preference number: 4 (lower is better)
Translates to: YQPQDDKELFKSLNQLHKFFPWG*WAAARL
Trigger: AAGTCTGGCAGCAGCCCACCATCCCCAAGGGAAAAA...CTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTGATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp ACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATACACTGGATTCTGTGGTaGTGGCAGTCACCATCTCAT +
Preference number: 4 (lower is better)
Translates to: TSGLNSEQASTDYSANQIHWILW*WQSPSH
Trigger: ATGAGATGGTGACTGCCACCACCACAGAATCCAGTG...TATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp TATCAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGGCCATCTCCATGCTTTaGAGCAGAGACTCCAGTTTC +
Preference number: 4 (lower is better)
Translates to: YQPQDDKELFKSLNQLHKAISML*SRDSSF
Trigger: GAAACTGGAGTCTCTGCTTCAAAGCATGGAGATGGC...CTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTGATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp ACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAAGCTTTAGCACACTCTaGATGAGCTCTGAGATGGCA +
Preference number: 4 (lower is better)
Translates to: TSGLNSEQASTDYSANQISFSTL*MSSEMA
Trigger: TGCCATCTCAGAGCTCATTCAGAGTGTGCTAAAGCT...TATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp ACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGGCAGAGATAGATTCTaGGAAGCTTTCCATCGAGTC +
Preference number: 4 (lower is better)
Translates to: TSGLNSEQASTDYSANQIGRDRF*EAFHRV
Trigger: GACTCGATGGAAAGCTTCTCAGAATCTATCTCTGCC...TATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp AATACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAGGCAGAGATAGATTCTaGGAAGCTTTCCATCGAGTC +
Preference number: 4 (lower is better)
Translates to: NTSGLNSEQASTDYSANQGRDRF*EAFHRV
Trigger: GACTCGATGGAAAGCTTCTCAGAATCTATCTCTGCC...TTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGCGAGGAGCTAAAATCTaGTTCACTGCCTGGCTTTAT +
Preference number: 4 (lower is better)
Translates to: SGLNSEQASTDYSANQIARGAKI*FTAWLY
Trigger: ATAAAGCCAGGCAGTGAAGCAGATTTTAGCTCCTCG...CGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp AGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTCGAGGAGCTAAAATCTaGTTCACTGCCTGGCTTTAT +
Preference number: 4 (lower is better)
Translates to: SEQASTDYSANQIARSKTRGAKI*FTAWLY
Trigger: ATAAAGCCAGGCAGTGAAGCAGATTTTAGCTCCTCG...AGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp ACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATACCACCAAGAAATTGCTaGTCCAGTACTGCCTCACAA +
Preference number: 4 (lower is better)
Translates to: TSGLNSEQASTDYSANQIPPRNC*SSTASQ
Trigger: TTGTGAGGCAGTACTGGAGCAGCAATTTCTTGGTGG...TATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp AATACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAACCACCAAGAAATTGCTaGTCCAGTACTGCCTCACAA +
Preference number: 4 (lower is better)
Translates to: NTSGLNSEQASTDYSANQPPRNC*SSTASQ
Trigger: TTGTGAGGCAGTACTGGAGCAGCAATTTCTTGGTGG...TTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp AATACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAGATCCACCAAGAAATTaGTGCTCCAGTACTGCCTCA +
Preference number: 4 (lower is better)
Translates to: NTSGLNSEQASTDYSANQDPPRN*CSSTAS
Trigger: TGAGGCAGTACTGGAGCAGCAATTTCTTGGTGGATC...TTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp ACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATATCTCTGAGTACTGAATaGCCACAGAACAGTGGGTAC +
Preference number: 4 (lower is better)
Translates to: TSGLNSEQASTDYSANQISLSTE*PQNSGY
Trigger: GTACCCACTGTTCTGTGGGCATTCAGTACTCAGAGA...TATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACATCTGCTTCACTGCCTaGCTTTATGATGCCTCCCTT +
Preference number: 4 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYICFTA*LYDASL
Trigger: AAGGGAGGCATCATAAAGCCAGGCAGTGAAGCAGAT...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp AATTACACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTAGTCAAATACTGTTCTaGATTTGGGGGTTTGACACC +
Preference number: 4 (lower is better)
Translates to: NYTFSNGTKQSKEITCQPSQILF*IWGFDT
Trigger: GGTGTCAAACCCCCAAATCCAGAACAGTATTTGACT...AGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTGTAATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR TCA 90 bp TATCAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGAATCTAGCTCTCTCATaGGGCGATTTGCATGGGCTT +
Preference number: 4 (lower is better)
Translates to: YQPQDDKELFKSLNQLHKNLALS*GDLHGL
Trigger: AAGCCCATGCAAATCGCCTCATGAGAGAGCTAGATT...CTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTGATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TATCAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGGTGACCTCCTTCTGCTaGAGAGGAGTCAAATACTGT +
Preference number: 4 (lower is better)
Translates to: YQPQDDKELFKSLNQLHKVTSFC*RGVKYC
Trigger: ACAGTATTTGACTCCTCTGCAGCAGAAGGAGGTCAC...CTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTGATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TATCAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGACTGTGACCTCCTTCTaGTGCAGAGGAGTCAAATAC +
Preference number: 4 (lower is better)
Translates to: YQPQDDKELFKSLNQLHKTVTSF*CRGVKY
Trigger: GTATTTGACTCCTCTGCAGCAGAAGGAGGTCACAGT...CTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTGATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACCAGGGAACTATTGTGTaGCATCTCCATGCTTTGAAG +
Preference number: 4 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYQGTIV*HLHALK
Trigger: CTTCAAAGCATGGAGATGGCACACAATAGTTCCCTG...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp AATACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAACAGGGAACTATTGTGTaGCATCTCCATGCTTTGAAG +
Preference number: 4 (lower is better)
Translates to: NTSGLNSEQASTDYSANQQGTIV*HLHALK
Trigger: CTTCAAAGCATGGAGATGGCACACAATAGTTCCCTG...TTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGTATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TATCAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGCATCTAACAGATCTGTaGCTTCAGCCATGCTGTCTC +
Preference number: 4 (lower is better)
Translates to: YQPQDDKELFKSLNQLHKHLTDL*LQPCCL
Trigger: GAGACAGCATGGCTGAAGGCACAGATCTGTTAGATG...CTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTGATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp CAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAATTACACATTTTCTCCAGTTTCTTGTTTTaGATGTTTATGTCCACAAAG +
Preference number: 4 (lower is better)
Translates to: QSPAMHKSIGMLEQLHIFSSFLF*MFMSTK
Trigger: CTTTGTGGACATAAACATCCAAAACAAGAAACTGGA...GAAAATGTGTAATTGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR GCA 90 bp TATCAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGCGAGGAGCTAAAATCTaGTTCACTGCCTGGCTTTAT +
Preference number: 4 (lower is better)
Translates to: YQPQDDKELFKSLNQLHKRGAKI*FTAWLY
Trigger: ATAAAGCCAGGCAGTGAAGCAGATTTTAGCTCCTCG...CTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTGATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp TTATTTTTGGTTACAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACATCCAGTTTCTTGTTTTaGATGTTTATGTCCACAAAG +
Preference number: 4 (lower is better)
Translates to: LFLVTVPCYAQEHWNAGTSSFLF*MFMSTK
Trigger: CTTTGTGGACATAAACATCCAAAACAAGAAACTGGA...TGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAAAAATAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR CAA 72 bp GCTCAAGGCTTTAGGTTCAATTCCCAGCATAATCTTTaGCACTCATCCACTTGGTCTCTTTTCAACTTAATA +
Preference number: 4 (lower is better)
Translates to: AQGFRFNSQHNL*HSSTWSLFNLI
Trigger: TATTAAGTTGAAAAGAGACCAAGTGGATGAGTGCAAAAGATTATGCTGGGAATTGAACCTAAAGCCTTGAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
CDS-3UTR GCA 90 bp ACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAACTTGTCAAATGTGCTaGTCAGGGGTAAACTTTTCT +
Preference number: 4 (lower is better)
Translates to: TSGLNSEQASTDYSANQITCQMC*SGVNFS
Trigger: AGAAAAGTTTACCCCTGAGCAGCACATTTGACAAGT...TATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CCA 90 bp TATCAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGAGTCAAATACTGTTCTaGATTTGGGGGTTTGACACC +
Preference number: 4 (lower is better)
Translates to: YQPQDDKELFKSLNQLHKSQILF*IWGFDT
Trigger: GGTGTCAAACCCCCAAATCCAGAACAGTATTTGACT...CTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTGATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
3UTR CAA 72 bp TGTATGTTAGAAAGTAAGGAGGCATTTTGGTTAGATTaGGAAGACAACTGTGTTAGATTCCATTCTCAGAGA +
Preference number: 4 (lower is better)
Translates to: CMLESKEAFWLD*EDNCVRFHSQR
Trigger: TCTCTGAGAATGGAATCTAACACAGTTGTCTTCCAAATCTAACCAAAATGCCTCCTTACTTTCTAACATACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
3UTR CAA 72 bp CTAATTACATTCACCATGTACAAATATAAATGTTGCTaGAAGAAGGCCAGAGAGGGGACTTATAGAAATCCT +
Preference number: 4 (lower is better)
Translates to: LITFTMYKYKCC*KKAREGTYRNP
Trigger: AGGATTTCTATAAGTCCCCTCTCTGGCCTTCTTCAAGCAACATTTATATTTGTACATGGTGAATGTAATTAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
CDS GCA 90 bp CTGGACTGGGCCGCCGGCCGGCGACACAGCGCGTGGCAAGCGGTTTaGGCTGGGGCTGGAGGAACCAGCCCCGGCCCGCTCCGCCCGCGC +
Preference number: 5 (lower is better)
Translates to: LDWAAGRRHSAWQAV*AGAGGTSPGPLRPR
Trigger: GCGCGGGCGGAGCGGGCCGGGGCTGGTTCCTCCAGCCCCAGCGCAAACCGCTTGCCACGCGCTGTGTCGCCGGCCGGCGGCCCAGTCCAG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
ENSMUST00000228639.2
CDS GCA 90 bp CCATTGCGCTGTCCAGACAGTGTCCCCAAATGCCCTAGAGGCTTGTaGTGGACTGGGCCGCCGGCCGGCGACACAGCGCGTGGCAAGCGG +
Preference number: 5 (lower is better)
Translates to: PLRCPDSVPKCPRGL*WTGPPAGDTARGKR
Trigger: CCGCTTGCCACGCGCTGTGTCGCCGGCCGGCGGCCCAGTCCAGCACAAGCCTCTAGGGCATTTGGGGACACTGTCTGGACAGCGCAATGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
ENSMUST00000228639.2
CDS CCA 90 bp TTGCGCTGTCCAGACAGTGTCCCCAAATGCCCTAGAGGCTTGTGCTaGACTGGGCCGCCGGCCGGCGACACAGCGCGTGGCAAGCGGTTT +
Preference number: 5 (lower is better)
Translates to: LRCPDSVPKCPRGLC*TGPPAGDTARGKRF
Trigger: AAACCGCTTGCCACGCGCTGTGTCGCCGGCCGGCGGCCCAGTCCAGCACAAGCCTCTAGGGCATTTGGGGACACTGTCTGGACAGCGCAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
ENSMUST00000228639.2
CDS GCA 90 bp CTTTGCAGACCGTGTCCATTGCGCTGTCCAGACAGTGTCCCCAAATaGCCTAGAGGCTTGTGCTGGACTGGGCCGCCGGCCGGCGACACA +
Preference number: 5 (lower is better)
Translates to: LCRPCPLRCPDSVPK*PRGLCWTGPPAGDT
Trigger: TGTGTCGCCGGCCGGCGGCCCAGTCCAGCACAAGCCTCTAGGGCATTTGGGGACACTGTCTGGACAGCGCAATGGACACGGTCTGCAAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
ENSMUST00000228639.2
CDS GCA 90 bp CGCCGTCCAGGAGGAGGCACCGTTTCCTTTGCAGACCGTGTCCATTaGGCTGTCCAGACAGTGTCCCCAAATGCCCTAGAGGCTTGTGCT +
Preference number: 5 (lower is better)
Translates to: RRPGGGTVSFADRVH*AVQTVSPNALEACA
Trigger: AGCACAAGCCTCTAGGGCATTTGGGGACACTGTCTGGACAGCGCAATGGACACGGTCTGCAAAGGAAACGGTGCCTCCTCCTGGACGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090057.6
CDS CCA 90 bp GCTGAGGCCGATGGGGCCGCAGAATCAACCGGGGAATCCGGCTCCTaGAAATCTCTTTCTCCTGATGCTGCACTCTCTGCTCCTTCTTGC +
Preference number: 5 (lower is better)
Translates to: AEADGAAESTGESGS*KSLSPDAALSAPSC
Trigger: GCAAGAAGGAGCAGAGAGTGCAGCATCAGGAGAAAGAGATTTCCAGGAGCCGGATTCCCCGGTTGATTCTGCGGCCCCATCGGCCTCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000228057.2
CDS CCA 90 bp GCTGAGGCCGATGGGGCCGCAGAATCAACCGGGGAATCCGGCTCCTaGAAATCTCTTTCTCCTGATGCTGCACTCTCTGCTCCTTGCTCT +
Preference number: 5 (lower is better)
Translates to: AEADGAAESTGESGS*KSLSPDAALSAPCS
Trigger: AGAGCAAGGAGCAGAGAGTGCAGCATCAGGAGAAAGAGATTTCCAGGAGCCGGATTCCCCGGTTGATTCTGCGGCCCCATCGGCCTCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227305.2
CDS-3UTR CAA 90 bp CAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACAGACCAAGGGGAGAGCCTaGAGGGCTTGTGGCCCTGGA +
Preference number: 5 (lower is better)
Translates to: QTTRQGHKHAFYTTLVGQTKGRA*RACGPG
Trigger: TCCAGGGCCACAAGCCCTCAAGGCTCTCCCCTTGGT...CTGTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACGAGAGCCTTGAGGGCTaGTGGCCCTGGAGTGGAATG +
Preference number: 5 (lower is better)
Translates to: LRQHGRGISMLSTPLWWDESLEG*WPWSGM
Trigger: CATTCCACTCCAGGGCCACAAGCCCTCAAGGCTCTC...GTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGACCAAGGGGAGAGCCTaGAGGGCTTGTGGCCCTGGA +
Preference number: 5 (lower is better)
Translates to: LSTPLWWDSYQNQVSMPWTKGRA*RACGPG
Trigger: TCCAGGGCCACAAGCCCTCAAGGCTCTCCCCTTGGT...CCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS TCA 90 bp TTCATCGCTTCCAGGGCAAAAGCCAATGGGACTGTGCCCTGTGTCTaGAGGAGTCTTCACAGGCGATACCGACTGGCTGCTGGGACAACC +
Preference number: 5 (lower is better)
Translates to: FIASRAKANGTVPCV*RSLHRRYRLAAGTT
Trigger: GGTTGTCCCAGCAGCCAGTCGGTATCGCCTGTGAAGACTCCTTCAGACACAGGGCACAGTCCCATTGGCTTTTGCCCTGGAAGCGATGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS CCA 90 bp GGACTGTGCCCTGTGTCTGAAGGAGTCTTCACAGGCGATACCGACTaGCTGCTGGGACAACCTGTGTCATCTGAGCAGAAGCTGTTGCTG +
Preference number: 5 (lower is better)
Translates to: GLCPVSEGVFTGDTD*LLGQPVSSEQKLLL
Trigger: CAGCAACAGCTTCTGCTCAGATGACACAGGTTGTCCCAGCAGCCAGTCGGTATCGCCTGTGAAGACTCCTTCAGACACAGGGCACAGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS CCA 90 bp GGACTGTGCCCTGTGTCTGAAGGAGTCTTCACAGGCGATACCGACTaGCTGCTGGGACAACCTGTGTCATCGTTTCCTTTGCAGACCGTG +
Preference number: 5 (lower is better)
Translates to: GLCPVSEGVFTGDTD*LLGQPVSSFPLQTV
Trigger: CACGGTCTGCAAAGGAAACGATGACACAGGTTGTCCCAGCAGCCAGTCGGTATCGCCTGTGAAGACTCCTTCAGACACAGGGCACAGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110269.8
CDS-3UTR CAA 90 bp ACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACAAAATGCCCTAGAGGCTaGTGCTGGACTGGGCCGCCG +
Preference number: 5 (lower is better)
Translates to: TSTDHLLLLYLASGHTDTKCPRG*CWTGPP
Trigger: CGGCGGCCCAGTCCAGCACAAGCCTCTAGGGCATTT...TGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
CDS-3UTR CAA 90 bp GCATGCTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCGAGAGCCTTGAGGGCTaGTGGCCCTGGAGTGGAATG +
Preference number: 5 (lower is better)
Translates to: ACFLHHSGGTATRTRFPCESLEG*WPWSGM
Trigger: CATTCCACTCCAGGGCCACAAGCCCTCAAGGCTCTC...GCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACATACCAAGGGGAGAGCCTaGAGGGCTTGTGGCCCTGGA +
Preference number: 5 (lower is better)
Translates to: LPLITCCCSTWHQATQIHTKGRA*RACGPG
Trigger: TCCAGGGCCACAAGCCCTCAAGGCTCTCCCCTTGGT...ATGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS GCA 90 bp TGTGCCCTGTGTCTGAAGGAGTCTTCACAGGCGATACCGACTGGCTaGTGGGACAACCTGTGTCATCGTTTCCTTTGCAGACCGTGTCCA +
Preference number: 5 (lower is better)
Translates to: CALCLKESSQAIPTG*WDNLCHRFLCRPCP
Trigger: TGGACACGGTCTGCAAAGGAAACGATGACACAGGTTGTCCCAGCAGCCAGTCGGTATCGCCTGTGAAGACTCCTTCAGACACAGGGCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110269.8
CDS GCA 90 bp GCTGGGACAACCTGTGTCATCGTTTCCTTTGCAGACCGTGTCCATTaGGCTGTCCAGACAGTGTCCCCAAATGCCCTAGAGGCTTGTGCT +
Preference number: 5 (lower is better)
Translates to: AGTTCVIVSFADRVH*AVQTVSPNALEACA
Trigger: AGCACAAGCCTCTAGGGCATTTGGGGACACTGTCTGGACAGCGCAATGGACACGGTCTGCAAAGGAAACGATGACACAGGTTGTCCCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
CDS-3UTR CAA 90 bp CTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGGGGCTGCTGCCAGACTaGTGGGATGATGCTCCATTG +
Preference number: 5 (lower is better)
Translates to: LSTPLWWDSYQNQVSMPWGLLPD*WDDAPL
Trigger: CAATGGAGCATCATCCCACAAGTCTGGCAGCAGCCC...CCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp GAACGGGCACCTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTTCAGACTCCTTCAGCTaGGTCCTCAGGTGCCTCACT +
Preference number: 5 (lower is better)
Translates to: ERAPQTTRQGHKHAFYTTSDSFS*VLRCLT
Trigger: AGTGAGGCACCTGAGGACCAAGCTGAAGGAGTCTGA...AGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAGGTGCCCGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACCTGGAGATGCTGAGCTaGTGGGACAGTAGTCCTGCA +
Preference number: 5 (lower is better)
Translates to: LRQHGRGISMLSTPLWWDLEMLS*WDSSPA
Trigger: TGCAGGACTACTGTCCCACAAGCTCAGCATCTCCAG...GTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS GCA 90 bp CTGGTAAAGTCTTCATCGCTTCCAGGGCAAAAGCCAATGGGACTGTaGCCTGTGTCTGAAGGAGTCTTCACAGGCGATACCGACTGGCTG +
Preference number: 5 (lower is better)
Translates to: LVKSSSLPGQKPMGL*PVSEGVFTGDTDWL
Trigger: CAGCCAGTCGGTATCGCCTGTGAAGACTCCTTCAGACACAGGGCACAGTCCCATTGGCTTTTGCCCTGGAAGCGATGAAGACTTTACCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS GCA 90 bp CCAATTCTCCCCAGATCCATCGTTTCCTTTGCAGACCGTGTCCATTaGGCTGTCCAGACAGTGTCCCCAAATGCCCTAGAGGCTTGTGCT +
Preference number: 5 (lower is better)
Translates to: PILPRSIVSFADRVH*AVQTVSPNALEACA
Trigger: AGCACAAGCCTCTAGGGCATTTGGGGACACTGTCTGGACAGCGCAATGGACACGGTCTGCAAAGGAAACGATGGATCTGGGGAGAATTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
CDS CCA 90 bp GTTGAACTCTCTACTTTCTTCCTCCGAAAAGGGAGACTCGGAGGCTaGGGAAACCTTGTTCTGCTGCTGTTGCTGCTGCTGAGGCCGATG +
Preference number: 5 (lower is better)
Translates to: VELSTFFLRKGRLGG*GNLVLLLLLLLRPM
Trigger: CATCGGCCTCAGCAGCAGCAACAGCAGCAGAACAAGGTTTCCCCAGCCTCCGAGTCTCCCTTTTCGGAGGAAGAAAGTAGAGAGTTCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGAGGGCTGCTGCCAGACTaGTGGGATGATGCTCCATTG +
Preference number: 5 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGGLLPD*WDDAPL
Trigger: CAATGGAGCATCATCCCACAAGTCTGGCAGCAGCCC...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp GAACGGGCACCTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTGAGAAAGAGGCTCTCTaGTTTCCTGTCGTGGACATG +
Preference number: 5 (lower is better)
Translates to: ERAPQTTRQGHKHAFYTTEKEAL*FPVVDM
Trigger: CATGTCCACGACAGGAAACAAGAGAGCCTCTTTCTC...AGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAGGTGCCCGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACGAGAAAGAGGCTCTCTaGTTTCCTGTCGTGGACATG +
Preference number: 5 (lower is better)
Translates to: LRQHGRGISMLSTPLWWDEKEAL*FPVVDM
Trigger: CATGTCCACGACAGGAAACAAGAGAGCCTCTTTCTC...GTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGACGGAGTTGCTGCTACTaGGAGAAGAAGGGGCGTAAC +
Preference number: 5 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGRSCCY*EKKGRN
Trigger: GTTACGCCCCTTCTTCTCCAAGTAGCAGCAACTCCG...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACATCGGAGTTGCTGCTACTaGGAGAAGAAGGGGCGTAAC +
Preference number: 5 (lower is better)
Translates to: LPLITCCCSTWHQATQIHRSCCY*EKKGRN
Trigger: GTTACGCCCCTTCTTCTCCAAGTAGCAGCAACTCCG...ATGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGATCAGACTCCTTCAGCTaGGTCCTCAGGTGCCTCACT +
Preference number: 5 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGSDSFS*VLRCLT
Trigger: AGTGAGGCACCTGAGGACCAAGCTGAAGGAGTCTGA...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACATTCAGACTCCTTCAGCTaGGTCCTCAGGTGCCTCACT +
Preference number: 5 (lower is better)
Translates to: LPLITCCCSTWHQATQIHSDSFS*VLRCLT
Trigger: AGTGAGGCACCTGAGGACCAAGCTGAAGGAGTCTGA...ATGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp ACTGACAGAATAGAGACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGAGAGCCTTGAGGGCTaGTGGCCCTGGAGTGGAATG +
Preference number: 5 (lower is better)
Translates to: TDRIETSTDHLLLLYLASESLEG*WPWSGM
Trigger: CATTCCACTCCAGGGCCACAAGCCCTCAAGGCTCTC...TGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGTCTCTATTCTGTCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CTCAGACAACACGGCAGGGGCATAAGCATGCTTTCTACACCACTCTGGTGGGACAGATCCACCAAGAAATaGCTGCTCCAGTACTGCCTC +
Preference number: 5 (lower is better)
Translates to: LRQHGRGISMLSTPLWWDRSTKK*LLQYCL
Trigger: GAGGCAGTACTGGAGCAGCAATTTCTTGGTGGATCT...GTCCCACCAGAGTGGTGTAGAAAGCATGCTTATGCCCCTGCCGTGTTGTCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp GCATGCTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCGAGAAAGAGGCTCTCTaGTTTCCTGTCGTGGACATG +
Preference number: 5 (lower is better)
Translates to: ACFLHHSGGTATRTRFPCEKEAL*FPVVDM
Trigger: CATGTCCACGACAGGAAACAAGAGAGCCTCTTTCTC...GCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp GCATGCTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCTCCCTCAGGGAACTATaGTGTGCCATCTCCATGCTT +
Preference number: 5 (lower is better)
Translates to: ACFLHHSGGTATRTRFPCSLREL*CAISML
Trigger: AAGCATGGAGATGGCACACAATAGTTCCCTGAGGGA...GCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAGCATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGAGATCCACCAAGAAATaGCTGCTCCAGTACTGCCTC +
Preference number: 5 (lower is better)
Translates to: LSTPLWWDSYQNQVSMPWRSTKK*LLQYCL
Trigger: GAGGCAGTACTGGAGCAGCAATTTCTTGGTGGATCT...CCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCAGGCCACACAGATACATTCTGAGCAGAAGCTGTaGCTGCTAATCGTCCTTGCT +
Preference number: 5 (lower is better)
Translates to: LPLITCCCSTWHQATQIHSEQKL*LLIVLA
Trigger: AGCAAGGACGATTAGCAGCAACAGCTTCTGCTCAGA...ATGTATCTGTGTGGCCTGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CATGCCAGCCTTAGAAAGGCTGTGGTGAAAGTGCAAACGGCATTTTCTCTTCCTCGGAGTTGCTGCTACTaGGAGAAGAAGGGGCGTAAC +
Preference number: 5 (lower is better)
Translates to: HASLRKAVVKVQTAFSLPRSCCY*EKKGRN
Trigger: GTTACGCCCCTTCTTCTCCAAGTAGCAGCAACTCCG...AGGAAGAGAAAATGCCGTTTGCACTTTCACCACAGCCTTTCTAAGGCTGGCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CTTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGTGCCATCTCCATGCTTaGAAGCAGAGACTCCAGTTT +
Preference number: 5 (lower is better)
Translates to: LSTPLWWDSYQNQVSMPWCHLHA*KQRLQF
Trigger: AAACTGGAGTCTCTGCTTCAAAGCATGGAGATGGCA...CCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CATGCCAGCCTTAGAAAGGCTGTGGTGAAAGTGCAAACGGCATTTTCTCTTCCTCTGGAGATGCTGAGCTaGTGGGACAGTAGTCCTGCA +
Preference number: 5 (lower is better)
Translates to: HASLRKAVVKVQTAFSLPLEMLS*WDSSPA
Trigger: TGCAGGACTACTGTCCCACAAGCTCAGCATCTCCAG...AGGAAGAGAAAATGCCGTTTGCACTTTCACCACAGCCTTTCTAAGGCTGGCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp ATGAGTGCTATGCTGAGAGGTGACAAGCAGGGTAACATTTGTTTCCTTGATTATAAATGCCCTAGAGGCTaGTGCTGGACTGGGCCGCCG +
Preference number: 5 (lower is better)
Translates to: MSAMLRGDKQGNICFLDYKCPRG*CWTGPP
Trigger: CGGCGGCCCAGTCCAGCACAAGCCTCTAGGGCATTT...ATAATCAAGGAAACAAATGTTACCCTGCTTGTCACCTCTCAGCATAGCACTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
CDS-3UTR CAA 90 bp CAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAATTACACATTTTCGAGGCTGGGGAAACCTaGTTCTGCTGCTGTTGCTGC +
Preference number: 5 (lower is better)
Translates to: QSPAMHKSIGMLEQLHIFEAGET*FCCCCC
Trigger: GCAGCAACAGCAGCAGAACAAGGTTTCCCCAGCCTC...GAAAATGTGTAATTGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp TTTCTACACCACTCTGGTGGGACAGCTACCAGAACCAGGTTTCCATGCCTTGGATGCCATCTCCATGCTTaGAAGCAGAGACTCCAGTTT +
Preference number: 5 (lower is better)
Translates to: FLHHSGGTATRTRFPCLGCHLHA*KQRLQF
Trigger: AAACTGGAGTCTCTGCTTCAAAGCATGGAGATGGCA...TCCAAGGCATGGAAACCTGGTTCTGGTAGCTGTCCCACCAGAGTGGTGTAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp TTATTTTTGGTTACAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAGAGAGCCTTGAGGGCTaGTGGCCCTGGAGTGGAATG +
Preference number: 5 (lower is better)
Translates to: LFLVTVPCYAQEHWNAGTESLEG*WPWSGM
Trigger: CATTCCACTCCAGGGCCACAAGCCCTCAAGGCTCTC...TGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTGTAACCAAAAATAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CATGCCAGCCTTAGAAAGGCTGTGGTGAAAGTGCAAACGGCATTTTCTCTTCCTTCTGAGCAGAAGCTGTaGCTGCTAATCGTCCTTGCT +
Preference number: 5 (lower is better)
Translates to: HASLRKAVVKVQTAFSLPSEQKL*LLIVLA
Trigger: AGCAAGGACGATTAGCAGCAACAGCTTCTGCTCAGA...AGGAAGAGAAAATGCCGTTTGCACTTTCACCACAGCCTTTCTAAGGCTGGCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACAAATGCCCTAGAGGCTaGTGCTGGACTGGGCCGCCG +
Preference number: 5 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYKCPRG*CWTGPP
Trigger: CGGCGGCCCAGTCCAGCACAAGCCTCTAGGGCATTT...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
CDS-3UTR CAA 90 bp CAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGACAGACTTGTTCTGCTGCTGTaGCTGCTGCTGAGGCCGATG +
Preference number: 5 (lower is better)
Translates to: QASTDYSANQIARSKTDRLVLLL*LLLRPM
Trigger: CATCGGCCTCAGCAGCAGCAACAGCAGCAGAACAAG...TCTGTCAGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGACAGAGAGGCTGGGGAAACCTaGTTCTGCTGCTGTTGCTGC +
Preference number: 5 (lower is better)
Translates to: QASTDYSANQIARSKTDREAGET*FCCCCC
Trigger: GCAGCAACAGCAGCAGAACAAGGTTTCCCCAGCCTC...TCTGTCAGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp AATTACACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTGGGCTGCTGCCAGACTaGTGGGATGATGCTCCATTG +
Preference number: 5 (lower is better)
Translates to: NYTFSNGTKQSKEITCQPGLLPD*WDDAPL
Trigger: CAATGGAGCATCATCCCACAAGTCTGGCAGCAGCCC...AGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTGTAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp ACTGACAGAATAGAGACTTCCACTGATCACCTGCTGTTGCTCTACCTGGCATCATGCCATCTCCATGCTTaGAAGCAGAGACTCCAGTTT +
Preference number: 5 (lower is better)
Translates to: TDRIETSTDHLLLLYLASCHLHA*KQRLQF
Trigger: AAACTGGAGTCTCTGCTTCAAAGCATGGAGATGGCA...TGATGCCAGGTAGAGCAACAGCAGGTGATCAGTGGAAGTCTCTATTCTGTCAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp AATACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAACCAAGGGGAGAGCCTaGAGGGCTTGTGGCCCTGGA +
Preference number: 5 (lower is better)
Translates to: NTSGLNSEQASTDYSANQTKGRA*RACGPG
Trigger: TCCAGGGCCACAAGCCCTCAAGGCTCTCCCCTTGGT...TTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp AGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGAGGCTGGGGAAACCTaGTTCTGCTGCTGTTGCTGC +
Preference number: 5 (lower is better)
Translates to: SEQASTDYSANQIARSKTEAGET*FCCCCC
Trigger: GCAGCAACAGCAGCAGAACAAGGTTTCCCCAGCCTC...AGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp AATTACACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTCGGAGTTGCTGCTACTaGGAGAAGAAGGGGCGTAAC +
Preference number: 5 (lower is better)
Translates to: NYTFSNGTKQSKEITCQPRSCCY*EKKGRN
Trigger: GTTACGCCCCTTCTTCTCCAAGTAGCAGCAACTCCG...AGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTGTAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGACAGATCAGACTCCTTCAGCTaGGTCCTCAGGTGCCTCACT +
Preference number: 5 (lower is better)
Translates to: QASTDYSANQIARSKTDRSDSFS*VLRCLT
Trigger: AGTGAGGCACCTGAGGACCAAGCTGAAGGAGTCTGA...TCTGTCAGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACCTTGTTCTGCTGCTGTaGCTGCTGCTGAGGCCGATG +
Preference number: 5 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYLVLLL*LLLRPM
Trigger: CATCGGCCTCAGCAGCAGCAACAGCAGCAGAACAAG...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACGGGCTGCTGCCAGACTaGTGGGATGATGCTCCATTG +
Preference number: 5 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYGLLPD*WDDAPL
Trigger: CAATGGAGCATCATCCCACAAGTCTGGCAGCAGCCC...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp AGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTTCAGACTCCTTCAGCTaGGTCCTCAGGTGCCTCACT +
Preference number: 5 (lower is better)
Translates to: SEQASTDYSANQIARSKTSDSFS*VLRCLT
Trigger: AGTGAGGCACCTGAGGACCAAGCTGAAGGAGTCTGA...AGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CAGTCCCCTGCTATGCACAAGAGCATTGGAATGCTGGAACAATTACACATTTTCTGCCATCTCCATGCTTaGAAGCAGAGACTCCAGTTT +
Preference number: 5 (lower is better)
Translates to: QSPAMHKSIGMLEQLHIFCHLHA*KQRLQF
Trigger: AAACTGGAGTCTCTGCTTCAAAGCATGGAGATGGCA...GAAAATGTGTAATTGTTCCAGCATTCCAATGCTCTTGTGCATAGCAGGGGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTTAGAATCCCTCAGGGAACTATaGTGTGCCATCTCCATGCTT +
Preference number: 5 (lower is better)
Translates to: HIFKRHKAKQGDNMPALESLREL*CAISML
Trigger: AAGCATGGAGATGGCACACAATAGTTCCCTGAGGGA...TTCTAAGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp AGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTCTGGAGATGCTGAGCTaGTGGGACAGTAGTCCTGCA +
Preference number: 5 (lower is better)
Translates to: SEQASTDYSANQIARSKTLEMLS*WDSSPA
Trigger: TGCAGGACTACTGTCCCACAAGCTCAGCATCTCCAG...AGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp ACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATACGGAGTTGCTGCTACTaGGAGAAGAAGGGGCGTAAC +
Preference number: 5 (lower is better)
Translates to: TSGLNSEQASTDYSANQIRSCCY*EKKGRN
Trigger: GTTACGCCCCTTCTTCTCCAAGTAGCAGCAACTCCG...TATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CATGCCAGCCTTAGAAAGGCTGTGGTGAAAGTGCAAACGGCATTTTCTCTTCCTAGAGACTCCAGTTTCTaGTTTTGGATGTTTATGTCC +
Preference number: 5 (lower is better)
Translates to: HASLRKAVVKVQTAFSLPRDSSF*FWMFMS
Trigger: GGACATAAACATCCAAAACAAGAAACTGGAGTCTCT...AGGAAGAGAAAATGCCGTTTGCACTTTCACCACAGCCTTTCTAAGGCTGGCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACCTGGAGATGCTGAGCTaGTGGGACAGTAGTCCTGCA +
Preference number: 5 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYLEMLS*WDSSPA
Trigger: TGCAGGACTACTGTCCCACAAGCTCAGCATCTCCAG...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp AATTACACATTTTCAAACGGCACAAAGCAAAGCAAGGAGATAACATGCCAGCCTAGATCCACCAAGAAATaGCTGCTCCAGTACTGCCTC +
Preference number: 5 (lower is better)
Translates to: NYTFSNGTKQSKEITCQPRSTKK*LLQYCL
Trigger: GAGGCAGTACTGGAGCAGCAATTTCTTGGTGGATCT...AGGCTGGCATGTTATCTCCTTGCTTTGCTTTGTGCCGTTTGAAAATGTGTAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp AGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAAGCAAAACTGAGAAAGAGGCTCTCTaGTTTCCTGTCGTGGACATG +
Preference number: 5 (lower is better)
Translates to: SEQASTDYSANQIARSKTEKEAL*FPVVDM
Trigger: CATGTCCACGACAGGAAACAAGAGAGCCTCTTTCTC...AGTTTTGCTTCTCGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp TATCAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGCTGGAGATGCTGAGCTaGTGGGACAGTAGTCCTGCA +
Preference number: 5 (lower is better)
Translates to: YQPQDDKELFKSLNQLHKLEMLS*WDSSPA
Trigger: TGCAGGACTACTGTCCCACAAGCTCAGCATCTCCAG...CTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTGATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp TCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGATCCACCAAGAAATaGCTGCTCCAGTACTGCCTC +
Preference number: 5 (lower is better)
Translates to: SGLNSEQASTDYSANQIARSTKK*LLQYCL
Trigger: GAGGCAGTACTGGAGCAGCAATTTCTTGGTGGATCT...CGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACTCTGAGCAGAAGCTGTaGCTGCTAATCGTCCTTGCT +
Preference number: 5 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYSEQKL*LLIVLA
Trigger: AGCAAGGACGATTAGCAGCAACAGCTTCTGCTCAGA...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACTCCCTCAGGGAACTATaGTGTGCCATCTCCATGCTT +
Preference number: 5 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYSLREL*CAISML
Trigger: AAGCATGGAGATGGCACACAATAGTTCCCTGAGGGA...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp AATACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAATCCCTCAGGGAACTATaGTGTGCCATCTCCATGCTT +
Preference number: 5 (lower is better)
Translates to: NTSGLNSEQASTDYSANQSLREL*CAISML
Trigger: AAGCATGGAGATGGCACACAATAGTTCCCTGAGGGA...TTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp ACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATATCCCTCAGGGAACTATaGTGTGCCATCTCCATGCTT +
Preference number: 5 (lower is better)
Translates to: TSGLNSEQASTDYSANQISLREL*CAISML
Trigger: AAGCATGGAGATGGCACACAATAGTTCCCTGAGGGA...TATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp TATCAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTCTGAGCAGAAGCTGTaGCTGCTAATCGTCCTTGCT +
Preference number: 5 (lower is better)
Translates to: YQPQDDKELFKSLNQLHKSEQKL*LLIVLA
Trigger: AGCAAGGACGATTAGCAGCAACAGCTTCTGCTCAGA...CTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTGATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp TCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAGCGAGAGACTCCAGTTTCTaGTTTTGGATGTTTATGTCC +
Preference number: 5 (lower is better)
Translates to: SGLNSEQASTDYSANQIARDSSF*FWMFMS
Trigger: GGACATAAACATCCAAAACAAGAAACTGGAGTCTCT...CGCTATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp ACCTCTGGTTTAAACAGTGAACAGGCTTCAACTGACTATAGTGCAAATCAAATAAGAGACTCCAGTTTCTaGTTTTGGATGTTTATGTCC +
Preference number: 5 (lower is better)
Translates to: TSGLNSEQASTDYSANQIRDSSF*FWMFMS
Trigger: GGACATAAACATCCAAAACAAGAAACTGGAGTCTCT...TATTTGATTTGCACTATAGTCAGTTGAAGCCTGTTCACTGTTTAAACCAGAGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS-3UTR CAA 90 bp CAACCTCAAGACGATAAAGAGCTATTCAAGTCTTTGAACCAATTACACAAGTACAGAGACTCCAGTTTCTaGTTTTGGATGTTTATGTCC +
Preference number: 5 (lower is better)
Translates to: QPQDDKELFKSLNQLHKYRDSSF*FWMFMS
Trigger: GGACATAAACATCCAAAACAAGAAACTGGAGTCTCT...GTACTTGTGTAATTGGTTCAAAGACTTGAATAGCTCTTTATCGTCTTGAGGTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS CAA 90 bp GCTGGACTGGGCCGCCGGCCGGCGACACAGCGCGTGGCAAGCGGTTaGCGCTGGGGCTGGAGGAACCAGCCCCGGCCCGCTCCGCCCGCG +
Preference number: 6 (lower is better)
Translates to: AGLGRRPATQRVASG*RWGWRNQPRPAPPA
Trigger: CGCGGGCGGAGCGGGCCGGGGCTGGTTCCTCCAGCCCCAGCGCAAACCGCTTGCCACGCGCTGTGTCGCCGGCCGGCGGCCCAGTCCAGC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
ENSMUST00000228639.2
CDS GCA 72 bp GCCGCCGGCCGGCGACACAGCGCGTGGCAAGCGGTTTaGGCTGGGGCTGGAGGAACCAGCCCCGGCCCGCTC +
Preference number: 6 (lower is better)
Translates to: AAGRRHSAWQAV*AGAGGTSPGPL
Trigger: GAGCGGGCCGGGGCTGGTTCCTCCAGCCCCAGCGCAAACCGCTTGCCACGCGCTGTGTCGCCGGCCGGCGGC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
ENSMUST00000228639.2
CDS CCA 72 bp CGGCCGGCGACACAGCGCGTGGCAAGCGGTTTGCGCTaGGGCTGGAGGAACCAGCCCCGGCCCGCTCCGCCC +
Preference number: 6 (lower is better)
Translates to: RPATQRVASGLR*GWRNQPRPAPP
Trigger: GGGCGGAGCGGGCCGGGGCTGGTTCCTCCAGCCCCAGCGCAAACCGCTTGCCACGCGCTGTGTCGCCGGCCG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
ENSMUST00000228639.2
CDS GCA 72 bp ATTTCGCTGCTGCCTGCCGGCTCCCCACGCCGCCGCTaGCGCCGCCGCCGCCGTCCAGGAGGAGGCACCGTT +
Preference number: 6 (lower is better)
Translates to: ISLLPAGSPRRR*RRRRRPGGGTV
Trigger: AACGGTGCCTCCTCCTGGACGGCGGCGGCGGCGGCAGCGGCGGCGTGGGGAGCCGGCAGGCAGCAGCGAAAT
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090057.6
CDS TCA 72 bp GGCAGCTGCCAGCGCGCTCCGGTCCCCTCGGCCTCTTaGCTTCTGGAGCCAGCACGGCGGCACCTGGGGCTT +
Preference number: 6 (lower is better)
Translates to: GSCQRAPVPSAS*LLEPARRHLGL
Trigger: AAGCCCCAGGTGCCGCCGTGCTGGCTCCAGAAGTCAAGAGGCCGAGGGGACCGGAGCGCGCTGGCAGCTGCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
ENSMUST00000228639.2
CDS CCA 72 bp CCAGACAGTGTCCCCAAATGCCCTAGAGGCTTGTGCTaGACTGGGCCGCCGGCCGGCGACACAGCGCGTGGC +
Preference number: 6 (lower is better)
Translates to: PDSVPKCPRGLC*TGPPAGDTARG
Trigger: GCCACGCGCTGTGTCGCCGGCCGGCGGCCCAGTCCAGCACAAGCCTCTAGGGCATTTGGGGACACTGTCTGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
ENSMUST00000228639.2
CDS CAA 72 bp CGCTGTCCAGACAGTGTCCCCAAATGCCCTAGAGGCTaGTGCTGGACTGGGCCGCCGGCCGGCGACACAGCG +
Preference number: 6 (lower is better)
Translates to: RCPDSVPKCPRG*CWTGPPAGDTA
Trigger: CGCTGTGTCGCCGGCCGGCGGCCCAGTCCAGCACAAGCCTCTAGGGCATTTGGGGACACTGTCTGGACAGCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
ENSMUST00000228639.2
CDS GCA 72 bp TGTCCAGACAGTGTCCCCAAATGCCCTAGAGGCTTGTaGTGGACTGGGCCGCCGGCCGGCGACACAGCGCGT +
Preference number: 6 (lower is better)
Translates to: CPDSVPKCPRGL*WTGPPAGDTAR
Trigger: ACGCGCTGTGTCGCCGGCCGGCGGCCCAGTCCAGCACAAGCCTCTAGGGCATTTGGGGACACTGTCTGGACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
ENSMUST00000228639.2
CDS CAA 90 bp TGTCCATTGCGCTGTCCAGACAGTGTCCCCAAATGCCCTAGAGGCTaGTGCTGGACTGGGCCGCCGGCCGGCGACACAGCGCGTGGCAAG +
Preference number: 6 (lower is better)
Translates to: CPLRCPDSVPKCPRG*CWTGPPAGDTARGK
Trigger: CTTGCCACGCGCTGTGTCGCCGGCCGGCGGCCCAGTCCAGCACAAGCCTCTAGGGCATTTGGGGACACTGTCTGGACAGCGCAATGGACA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
ENSMUST00000228639.2
CDS GCA 72 bp CCGTGTCCATTGCGCTGTCCAGACAGTGTCCCCAAATaGCCTAGAGGCTTGTGCTGGACTGGGCCGCCGGCC +
Preference number: 6 (lower is better)
Translates to: PCPLRCPDSVPK*PRGLCWTGPPA
Trigger: GGCCGGCGGCCCAGTCCAGCACAAGCCTCTAGGGCATTTGGGGACACTGTCTGGACAGCGCAATGGACACGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090057.6
ENSMUST00000226214.2
ENSMUST00000228639.2
CDS CAA 72 bp GCCGCCGCCGCCGTCCAGGAGGAGGCACCGTTTCCTTaGCAGACCGTGTCCATTGCGCTGTCCAGACAGTGT +
Preference number: 6 (lower is better)
Translates to: AAAAVQEEAPFP*QTVSIALSRQC
Trigger: ACACTGTCTGGACAGCGCAATGGACACGGTCTGCAAAGGAAACGGTGCCTCCTCCTGGACGGCGGCGGCGGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090057.6
CDS CAA 90 bp CCGCCGTCCAGGAGGAGGCACCGTTTCCTTTGCAGACCGTGTCCATaGCGCTGTCCAGACAGTGTCCCCAAATGCCCTAGAGGCTTGTGC +
Preference number: 6 (lower is better)
Translates to: PPSRRRHRFLCRPCP*RCPDSVPKCPRGLC
Trigger: GCACAAGCCTCTAGGGCATTTGGGGACACTGTCTGGACAGCGCAATGGACACGGTCTGCAAAGGAAACGGTGCCTCCTCCTGGACGGCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090057.6
CDS GCA 72 bp GGAGGAGGCACCGTTTCCTTTGCAGACCGTGTCCATTaGGCTGTCCAGACAGTGTCCCCAAATGCCCTAGAG +
Preference number: 6 (lower is better)
Translates to: GGGTVSFADRVH*AVQTVSPNALE
Trigger: CTCTAGGGCATTTGGGGACACTGTCTGGACAGCGCAATGGACACGGTCTGCAAAGGAAACGGTGCCTCCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090057.6
CDS TCA 72 bp TCCAGGGCAAAAGCCAATGGGACTGTGCCCTGTGTCTaGAGGAGTCTTCACAGGCGATACCGACTGGCTGCT +
Preference number: 6 (lower is better)
Translates to: SRAKANGTVPCV*RSLHRRYRLAA
Trigger: AGCAGCCAGTCGGTATCGCCTGTGAAGACTCCTTCAGACACAGGGCACAGTCCCATTGGCTTTTGCCCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS CAA 90 bp TGCTGGGACAACCTGTGTCATCGTTTCCTTTGCAGACCGTGTCCATaGCGCTGTCCAGACAGTGTCCCCAAATGCCCTAGAGGCTTGTGC +
Preference number: 6 (lower is better)
Translates to: CWDNLCHRFLCRPCP*RCPDSVPKCPRGLC
Trigger: GCACAAGCCTCTAGGGCATTTGGGGACACTGTCTGGACAGCGCAATGGACACGGTCTGCAAAGGAAACGATGACACAGGTTGTCCCAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
CDS GCA 72 bp CCCAGATCCATCGTTTCCTTTGCAGACCGTGTCCATTaGGCTGTCCAGACAGTGTCCCCAAATGCCCTAGAG +
Preference number: 6 (lower is better)
Translates to: PRSIVSFADRVH*AVQTVSPNALE
Trigger: CTCTAGGGCATTTGGGGACACTGTCTGGACAGCGCAATGGACACGGTCTGCAAAGGAAACGATGGATCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
CDS GCA 72 bp ACTGGCTGCTGGGACAACCTGTGTCATCGTTTCCTTTaGAGACCGTGTCCATTGCGCTGTCCAGACAGTGTC +
Preference number: 6 (lower is better)
Translates to: TGCWDNLCHRFL*RPCPLRCPDSV
Trigger: GACACTGTCTGGACAGCGCAATGGACACGGTCTGCAAAGGAAACGATGACACAGGTTGTCCCAGCAGCCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
CDS CCA 72 bp CCTGTGTCTGAAGGAGTCTTCACAGGCGATACCGACTaGCTGCTGGGACAACCTGTGTCATCTGAGCAGAAG +
Preference number: 6 (lower is better)
Translates to: PVSEGVFTGDTD*LLGQPVSSEQK
Trigger: CTTCTGCTCAGATGACACAGGTTGTCCCAGCAGCCAGTCGGTATCGCCTGTGAAGACTCCTTCAGACACAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS CCA 72 bp CTGAAGGAGTCTTCACAGGCGATACCGACTGGCTGCTaGGACAACCTGTGTCATCGTTTCCTTTGCAGACCG +
Preference number: 6 (lower is better)
Translates to: LKESSQAIPTGC*DNLCHRFLCRP
Trigger: CGGTCTGCAAAGGAAACGATGACACAGGTTGTCCCAGCAGCCAGTCGGTATCGCCTGTGAAGACTCCTTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110269.8
CDS CAA 72 bp CTGCTGGGACAACCTGTGTCATCTGAGCAGAAGCTGTaGCTGCTAATCGTCCTTGCTGAGCGTCCAGAGCTG +
Preference number: 6 (lower is better)
Translates to: LLGQPVSSEQKL*LLIVLAERPEL
Trigger: CAGCTCTGGACGCTCAGCAAGGACGATTAGCAGCAACAGCTTCTGCTCAGATGACACAGGTTGTCCCAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS CAA 72 bp GACTGGCTGCTGGGACAACCTGTGTCATCGTTTCCTTaGCAGACCGTGTCCATTGCGCTGTCCAGACAGTGT +
Preference number: 6 (lower is better)
Translates to: DWLLGQPVSSFP*QTVSIALSRQC
Trigger: ACACTGTCTGGACAGCGCAATGGACACGGTCTGCAAAGGAAACGATGACACAGGTTGTCCCAGCAGCCAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
CDS CAA 90 bp ACCAATTCTCCCCAGATCCATCGTTTCCTTTGCAGACCGTGTCCATaGCGCTGTCCAGACAGTGTCCCCAAATGCCCTAGAGGCTTGTGC +
Preference number: 6 (lower is better)
Translates to: TNSPQIHRFLCRPCP*RCPDSVPKCPRGLC
Trigger: GCACAAGCCTCTAGGGCATTTGGGGACACTGTCTGGACAGCGCAATGGACACGGTCTGCAAAGGAAACGATGGATCTGGGGAGAATTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228639.2
CDS GCA 72 bp TGTCTGAAGGAGTCTTCACAGGCGATACCGACTGGCTaGTGGGACAACCTGTGTCATCTGAGCAGAAGCTGT +
Preference number: 6 (lower is better)
Translates to: CLKESSQAIPTG*WDNLCHLSRSC
Trigger: ACAGCTTCTGCTCAGATGACACAGGTTGTCCCAGCAGCCAGTCGGTATCGCCTGTGAAGACTCCTTCAGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS GCA 72 bp TCTTCATCGCTTCCAGGGCAAAAGCCAATGGGACTGTaGCCTGTGTCTGAAGGAGTCTTCACAGGCGATACC +
Preference number: 6 (lower is better)
Translates to: SSSLPGQKPMGL*PVSEGVFTGDT
Trigger: GGTATCGCCTGTGAAGACTCCTTCAGACACAGGGCACAGTCCCATTGGCTTTTGCCCTGGAAGCGATGAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000110269.8
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS GCA 72 bp ACCTGTGTCATCGTTTCCTTTGCAGACCGTGTCCATTaGGCTGTCCAGACAGTGTCCCCAAATGCCCTAGAG +
Preference number: 6 (lower is better)
Translates to: TCVIVSFADRVH*AVQTVSPNALE
Trigger: CTCTAGGGCATTTGGGGACACTGTCTGGACAGCGCAATGGACACGGTCTGCAAAGGAAACGATGACACAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226214.2
CDS CCA 72 bp TCTACTTTCTTCCTCCGAAAAGGGAGACTCGGAGGCTaGGGAAACCTTGTTCTGCTGCTGTTGCTGCTGCTG +
Preference number: 6 (lower is better)
Translates to: STFFLRKGRLGG*GNLVLLLLLLL
Trigger: CAGCAGCAGCAACAGCAGCAGAACAAGGTTTCCCCAGCCTCCGAGTCTCCCTTTTCGGAGGAAGAAAGTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000090057.6
ENSMUST00000110267.9
ENSMUST00000227305.2
ENSMUST00000228057.2
CDS CCA 72 bp CCTGTGTCTGAAGGAGTCTTCACAGGCGATACCGACTaGCTGCTGGGACAACCTGTGTCATCGTTTCCTTTG +
Preference number: 6 (lower is better)
Translates to: PVSEGVFTGDTD*LLGQPVSSFPL
Trigger: CAAAGGAAACGATGACACAGGTTGTCCCAGCAGCCAGTCGGTATCGCCTGTGAAGACTCCTTCAGACACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110269.8
CDS GCA 72 bp TGTCTGAAGGAGTCTTCACAGGCGATACCGACTGGCTaGTGGGACAACCTGTGTCATCGTTTCCTTTGCAGA +
Preference number: 6 (lower is better)
Translates to: CLKESSQAIPTG*WDNLCHRFLCR
Trigger: TCTGCAAAGGAAACGATGACACAGGTTGTCCCAGCAGCCAGTCGGTATCGCCTGTGAAGACTCCTTCAGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110269.8